GCA_001906995.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

LXIJ01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	73,915	86,011

LXIJ01000005.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	RiPP-like	27,808	46,603

LXIJ01000035.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	T3PKS	25,337	66,503

LXIJ01000046.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 46.1	lanthipeptide-class-ii	4,678	18,903	salivaricin A	RiPP:Lanthipeptide	37%

LXIJ01000057.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 57.1	RaS-RiPP	1	9,710

LXIJ01000083.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 83.1	lanthipeptide-class-ii	1	3,650	salivaricin 9	RiPP:Lanthipeptide	18%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RiPP-like	73,915	86,011
Region 5.1	RiPP-like	27,808	46,603
Region 35.1	T3PKS	25,337	66,503
Region 46.1	lanthipeptide-class-ii	4,678	18,903	salivaricin A	RiPP:Lanthipeptide	37%
Region 57.1	RaS-RiPP	1	9,710
Region 83.1	lanthipeptide-class-ii	1	3,650	salivaricin 9	RiPP:Lanthipeptide	18%

No secondary metabolite regions were found in these records:: LXIJ01000002.1; LXIJ01000003.1; LXIJ01000004.1; LXIJ01000006.1; LXIJ01000007.1; LXIJ01000008.1; LXIJ01000009.1; LXIJ01000010.1; LXIJ01000011.1; LXIJ01000012.1; LXIJ01000013.1; LXIJ01000014.1; LXIJ01000015.1; LXIJ01000016.1; LXIJ01000017.1; LXIJ01000018.1; LXIJ01000019.1; LXIJ01000020.1; LXIJ01000021.1; LXIJ01000022.1; LXIJ01000023.1; LXIJ01000024.1; LXIJ01000025.1; LXIJ01000026.1; LXIJ01000027.1; LXIJ01000028.1; LXIJ01000029.1; LXIJ01000030.1; LXIJ01000031.1; LXIJ01000032.1; LXIJ01000033.1; LXIJ01000034.1; LXIJ01000036.1; LXIJ01000037.1; LXIJ01000038.1; LXIJ01000039.1; LXIJ01000040.1; LXIJ01000041.1; LXIJ01000042.1; LXIJ01000043.1; LXIJ01000044.1; LXIJ01000045.1; LXIJ01000047.1; LXIJ01000048.1; LXIJ01000049.1; LXIJ01000050.1; LXIJ01000051.1; LXIJ01000052.1; LXIJ01000053.1; LXIJ01000054.1; LXIJ01000055.1; LXIJ01000056.1; LXIJ01000058.1; LXIJ01000059.1; LXIJ01000060.1; LXIJ01000061.1; LXIJ01000062.1; LXIJ01000063.1; LXIJ01000064.1; LXIJ01000065.1; LXIJ01000066.1; LXIJ01000067.1; LXIJ01000068.1; LXIJ01000069.1; LXIJ01000070.1; LXIJ01000071.1; LXIJ01000072.1; LXIJ01000073.1; LXIJ01000074.1; LXIJ01000075.1; LXIJ01000076.1; LXIJ01000077.1; LXIJ01000078.1; LXIJ01000079.1; LXIJ01000080.1; LXIJ01000081.1; LXIJ01000082.1; LXIJ01000084.1; LXIJ01000085.1; LXIJ01000086.1; LXIJ01000087.1; LXIJ01000088.1; LXIJ01000089.1; LXIJ01000090.1; LXIJ01000091.1; LXIJ01000092.1; LXIJ01000093.1; LXIJ01000094.1; LXIJ01000095.1; LXIJ01000096.1; LXIJ01000097.1

Compact view

LXIJ01000001.1 - Region 1 - RiPP-like

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Location: 73,915 - 86,011 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LXIJ01000005.1 - Region 1 - RiPP-like

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Location: 27,808 - 46,603 nt. (total: 18,796 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LXIJ01000035.1 - Region 1 - T3PKS

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Location: 25,337 - 66,503 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LXIJ01000046.1 - Region 1 - lanthipeptide-class-ii

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Location: 4,678 - 18,903 nt. (total: 14,226 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg46_11 - Putative Class II

ctg46_10 leader / core peptide: MIAMKNSKDILNNAIEEVSEKELMEVAGG - KRGDhbGWFADhbIDhbDDCPNDhaVFVCC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg46_10 - Class II

Cleavage pHMM score: 4.40

RODEO score: 0

Monoisotopic mass: 2347.1 Da

Molecular weight: 2348.7 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2366.7 Da N = 1

LXIJ01000057.1 - Region 1 - RaS-RiPP

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Location: 1 - 9,710 nt. (total: 9,710 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LXIJ01000083.1 - Region 1 - lanthipeptide-class-ii

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Location: 1 - 3,650 nt. (total: 3,650 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

Lanthipeptides

Core peptide predictions

No core peptides found.