GCA_001982435.1 - 3 region(s)

Identified primary metabolite regions

MSTC01000045.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	12,877	36,127	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

MSTC01000038.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	OD_fatty_acids	Putative	33,991	59,175

MSTC01000034.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	gallic_acid_met	Aromatic	1	12,584	Gallic acid degradation B. sp. KLE	GALL	100%

No primary metabolite regions were found in these records:: MSTC01000078.1; MSTC01000041.1; MSTC01000056.1; MSTC01000005.1; MSTC01000080.1; MSTC01000072.1; MSTC01000067.1; MSTC01000075.1; MSTC01000053.1; MSTC01000047.1; MSTC01000016.1; MSTC01000085.1; MSTC01000066.1; MSTC01000079.1; MSTC01000095.1; MSTC01000051.1; MSTC01000049.1; MSTC01000031.1; MSTC01000069.1; MSTC01000004.1; MSTC01000011.1; MSTC01000022.1; MSTC01000025.1; MSTC01000093.1; MSTC01000002.1; MSTC01000097.1; MSTC01000057.1; MSTC01000046.1; MSTC01000010.1; MSTC01000090.1; MSTC01000063.1; MSTC01000032.1; MSTC01000094.1; MSTC01000089.1; MSTC01000009.1; MSTC01000050.1; MSTC01000061.1; MSTC01000096.1; MSTC01000003.1; MSTC01000024.1; MSTC01000033.1; MSTC01000070.1; MSTC01000036.1; MSTC01000062.1; MSTC01000064.1; MSTC01000087.1; MSTC01000029.1; MSTC01000043.1; MSTC01000076.1; MSTC01000052.1; MSTC01000081.1; MSTC01000083.1; MSTC01000013.1; MSTC01000055.1; MSTC01000044.1; MSTC01000054.1; MSTC01000071.1; MSTC01000058.1; MSTC01000008.1; MSTC01000030.1; MSTC01000040.1; MSTC01000027.1; MSTC01000001.1; MSTC01000065.1; MSTC01000037.1; MSTC01000035.1; MSTC01000074.1; MSTC01000021.1; MSTC01000028.1; MSTC01000015.1; MSTC01000082.1; MSTC01000077.1; MSTC01000068.1; MSTC01000042.1; MSTC01000014.1; MSTC01000059.1

Compact view

MSTC01000045.1 - Region 1 - Pyruvate2acetate-formate

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Location: 12,877 - 36,127 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

MSTC01000038.1 - Region 1 - OD_fatty_acids

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Location: 33,991 - 59,175 nt. (total: 25,185 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

MSTC01000034.1 - Region 1 - gallic_acid_met

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Location: 1 - 12,584 nt. (total: 12,584 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters