Select genomic region:
Overview
39.1
43.1
62.1

### Identified primary metabolite regions

MIMP01000049.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 39.1 | pdu | SCFA-other | 6,860 | 34,864 | Propanediol degradation S. enterica | PDU | 66%

MIMP01000053.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 43.1 | proline2aminovalerate | npAA | 1,386 | 26,670 | Proline to aminovalerate C. sticklandii | AMI | 75%

MIMP01000072.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 62.1 | Nitrate_reductase | E-MGC | 1 | 16,968 | Nitrate reductase E. coli | NIR | 40%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 39.1 | pdu | SCFA-other | 6,860 | 34,864 | Propanediol degradation S. enterica | PDU | 66%
Region 43.1 | proline2aminovalerate | npAA | 1,386 | 26,670 | Proline to aminovalerate C. sticklandii | AMI | 75%
Region 62.1 | Nitrate_reductase | E-MGC | 1 | 16,968 | Nitrate reductase E. coli | NIR | 40%

No primary metabolite regions were found in these records:
  MIMP01000001.1
  MIMP01000002.1
  MIMP01000003.1
  MIMP01000004.1
  MIMP01000005.1
  MIMP01000006.1
  MIMP01000007.1
  MIMP01000008.1
  MIMP01000009.1
  MIMP01000010.1
  MIMP01000011.1
  MIMP01000012.1
  MIMP01000013.1
  MIMP01000014.1
  MIMP01000015.1
  MIMP01000016.1
  MIMP01000017.1
  MIMP01000018.1
  MIMP01000019.1
  MIMP01000020.1
  MIMP01000021.1
  MIMP01000022.1
  MIMP01000023.1
  MIMP01000024.1
  MIMP01000025.1
  MIMP01000026.1
  MIMP01000027.1
  MIMP01000028.1
  MIMP01000029.1
  MIMP01000030.1
  MIMP01000031.1
  MIMP01000032.1
  MIMP01000033.1
  MIMP01000034.1
  MIMP01000035.1
  MIMP01000036.1
  MIMP01000037.1
  MIMP01000044.1
  MIMP01000050.1
  MIMP01000051.1
  MIMP01000052.1
  MIMP01000054.1
  MIMP01000055.1
  MIMP01000056.1
  MIMP01000057.1
  MIMP01000058.1
  MIMP01000059.1
  MIMP01000060.1
  MIMP01000061.1
  MIMP01000062.1
  MIMP01000063.1
  MIMP01000064.1
  MIMP01000065.1
  MIMP01000066.1
  MIMP01000067.1
  MIMP01000068.1
  MIMP01000069.1
  MIMP01000070.1
  MIMP01000071.1
  MIMP01000073.1
  MIMP01000074.1
  MIMP01000075.1
  MIMP01000076.1
  MIMP01000077.1
  MIMP01000078.1
  MIMP01000079.1
  MIMP01000080.1
  MIMP01000081.1
  MIMP01000082.1
  MIMP01000083.1
  MIMP01000084.1
  MIMP01000085.1
  MIMP01000086.1
  MIMP01000087.1
  MIMP01000088.1
  MIMP01000089.1
  MIMP01000090.1
  MIMP01000091.1
  MIMP01000092.1
  MIMP01000093.1
  MIMP01000094.1
  MIMP01000095.1
  MIMP01000096.1
  MIMP01000097.1
  MIMP01000098.1
  MIMP01000099.1
  MIMP01000100.1
  MIMP01000101.1
  MIMP01000102.1
  MIMP01000103.1
  MIMP01000104.1
  MIMP01000105.1
  MIMP01000106.1
  MIMP01000107.1
  MIMP01000108.1
  MIMP01000109.1
  MIMP01000110.1
  MIMP01000111.1
  MIMP01000112.1
  MIMP01000113.1
  MIMP01000114.1
  MIMP01000115.1
  MIMP01000116.1
  MIMP01000117.1
  MIMP01000118.1
  MIMP01000119.1
  MIMP01000120.1
  MIMP01000121.1
  MIMP01000122.1
  MIMP01000123.1
  MIMP01000124.1
  MIMP01000125.1
  MIMP01000126.1
  MIMP01000127.1
  MIMP01000128.1
  MIMP01000129.1
  MIMP01000130.1
  MIMP01000131.1
  MIMP01000132.1
  MIMP01000133.1
  MIMP01000134.1
  MIMP01000135.1
  MIMP01000136.1
  MIMP01000137.1
  MIMP01000138.1
  MIMP01000139.1
  MIMP01000140.1
  MIMP01000141.1
  MIMP01000142.1
  MIMP01000143.1

Compact view
MIMP01000049.1 - Region 1 - pdu
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 6,860 - 34,864 nt. (total: 28,005 nt) Show pHMM detection rules used
Region on contig edge.
pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
MIMP01000053.1 - Region 1 - proline2aminovalerate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1,386 - 26,670 nt. (total: 25,285 nt) Show pHMM detection rules used
proline2aminovalerate: (Proline_reductase and (Pro_racemase or GRDB) and not ACP_syn_III_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
MIMP01000072.1 - Region 1 - Nitrate_reductase
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 16,968 nt. (total: 16,968 nt) Show pHMM detection rules used
Region on contig edge.
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.