GCA_002253865.1 - 2 region(s)

Identified primary metabolite regions

NGPK01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Nitrate_reductase	E-MGC	1	22,569	Nitrate reductase E. coli	NIR	40%

NGPK01000005.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	TPP_AA_metabolism	Putative	5,381	44,364

No primary metabolite regions were found in these records:: NGPK01000007.1; NGPK01000098.1; NGPK01000009.1; NGPK01000010.1; NGPK01000011.1; NGPK01000012.1; NGPK01000013.1; NGPK01000014.1; NGPK01000015.1; NGPK01000016.1; NGPK01000017.1; NGPK01000018.1; NGPK01000019.1; NGPK01000020.1; NGPK01000021.1; NGPK01000022.1; NGPK01000023.1; NGPK01000024.1; NGPK01000025.1; NGPK01000026.1; NGPK01000027.1; NGPK01000028.1; NGPK01000029.1; NGPK01000030.1; NGPK01000031.1; NGPK01000032.1; NGPK01000033.1; NGPK01000034.1; NGPK01000035.1; NGPK01000036.1; NGPK01000001.1; NGPK01000037.1; NGPK01000038.1; NGPK01000039.1; NGPK01000040.1; NGPK01000041.1; NGPK01000042.1; NGPK01000043.1; NGPK01000044.1; NGPK01000045.1; NGPK01000046.1; NGPK01000002.1; NGPK01000047.1; NGPK01000048.1; NGPK01000049.1; NGPK01000050.1; NGPK01000051.1; NGPK01000052.1; NGPK01000053.1; NGPK01000054.1; NGPK01000055.1; NGPK01000056.1; NGPK01000003.1; NGPK01000057.1; NGPK01000058.1; NGPK01000059.1; NGPK01000060.1; NGPK01000061.1; NGPK01000062.1; NGPK01000063.1; NGPK01000064.1; NGPK01000065.1; NGPK01000066.1; NGPK01000004.1; NGPK01000077.1; NGPK01000006.1; NGPK01000087.1

Compact view

NGPK01000008.1 - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 1 - 22,569 nt. (total: 22,569 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NGPK01000005.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 5,381 - 44,364 nt. (total: 38,984 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.