GCA_002254255.1 - 3 region(s)

Identified primary metabolite regions

NGQF01000025.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Nitrate_reductase	E-MGC	9,916	31,090	Nitrate reductase E. coli	NIR	40%

NGQF01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	pdu	SCFA-other	17,573	56,190	Propanediol degradation S. enterica	PDU	66%

NGQF01000055.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	TPP_AA_metabolism	Putative	5,537	39,567

No primary metabolite regions were found in these records:: NGQF01000001.1; NGQF01000010.1; NGQF01000011.1; NGQF01000012.1; NGQF01000013.1; NGQF01000014.1; NGQF01000015.1; NGQF01000016.1; NGQF01000017.1; NGQF01000018.1; NGQF01000019.1; NGQF01000002.1; NGQF01000020.1; NGQF01000021.1; NGQF01000022.1; NGQF01000023.1; NGQF01000024.1; NGQF01000026.1; NGQF01000027.1; NGQF01000028.1; NGQF01000029.1; NGQF01000030.1; NGQF01000031.1; NGQF01000032.1; NGQF01000033.1; NGQF01000034.1; NGQF01000035.1; NGQF01000036.1; NGQF01000037.1; NGQF01000038.1; NGQF01000039.1; NGQF01000004.1; NGQF01000040.1; NGQF01000041.1; NGQF01000042.1; NGQF01000043.1; NGQF01000044.1; NGQF01000045.1; NGQF01000046.1; NGQF01000047.1; NGQF01000048.1; NGQF01000049.1; NGQF01000005.1; NGQF01000050.1; NGQF01000051.1; NGQF01000052.1; NGQF01000053.1; NGQF01000006.1; NGQF01000066.1; NGQF01000007.1; NGQF01000077.1; NGQF01000008.1; NGQF01000087.1; NGQF01000009.1; NGQF01000097.1

Compact view

NGQF01000025.1 - Region 1 - Nitrate_reductase

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Location: 9,916 - 31,090 nt. (total: 21,175 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NGQF01000003.1 - Region 1 - pdu

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Location: 17,573 - 56,190 nt. (total: 38,618 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NGQF01000055.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 5,537 - 39,567 nt. (total: 34,031 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.