GCA_002271255.1 - 3 region(s)

Identified primary metabolite regions

MNLB01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Fumarate2succinate	SCFA	212,925	235,769	Fumarate2succinate suc dh E. coli	SUC	100%

MNLB01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Others_HGD_unassigned	Putative	12,783	37,562

MNLB01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Pyruvate2acetate-formate	SCFA	20,381	43,757	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: MNLB01000001.1; MNLB01000010.1; MNLB01000011.1; MNLB01000012.1; MNLB01000013.1; MNLB01000014.1; MNLB01000015.1; MNLB01000016.1; MNLB01000017.1; MNLB01000018.1; MNLB01000019.1; MNLB01000020.1; MNLB01000021.1; MNLB01000022.1; MNLB01000023.1; MNLB01000024.1; MNLB01000025.1; MNLB01000026.1; MNLB01000027.1; MNLB01000028.1; MNLB01000029.1; MNLB01000030.1; MNLB01000031.1; MNLB01000032.1; MNLB01000033.1; MNLB01000034.1; MNLB01000035.1; MNLB01000036.1; MNLB01000037.1; MNLB01000038.1; MNLB01000039.1; MNLB01000004.1; MNLB01000040.1; MNLB01000041.1; MNLB01000042.1; MNLB01000043.1; MNLB01000044.1; MNLB01000045.1; MNLB01000046.1; MNLB01000047.1; MNLB01000048.1; MNLB01000049.1; MNLB01000005.1; MNLB01000050.1; MNLB01000051.1; MNLB01000006.1; MNLB01000007.1; MNLB01000009.1

Compact view

MNLB01000002.1 - Region 1 - Fumarate2succinate

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Location: 212,925 - 235,769 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

MNLB01000003.1 - Region 1 - Others_HGD_unassigned

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Location: 12,783 - 37,562 nt. (total: 24,780 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

MNLB01000008.1 - Region 1 - Pyruvate2acetate-formate

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Location: 20,381 - 43,757 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters