Select genomic region:
Overview
13.1
53.1
73.1
105.1

### Identified secondary metabolite regions using strictness 'relaxed'

NPCF01000013.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | ectoine,lanthipeptide-class-iii | 40,415 | 64,178 | ectoine | Other | 75%

NPCF01000059.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 53.1 | T3PKS | 22,708 | 63,808 |

NPCF01000080.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 73.1 | lanthipeptide-class-i | 38,931 | 63,438 | chejuenolide A / chejuenolide B | Polyketide | 7%

NPCF01000113.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 105.1 | siderophore | 1 | 9,341 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | ectoine,lanthipeptide-class-iii | 40,415 | 64,178 | ectoine | Other | 75%
Region 53.1 | T3PKS | 22,708 | 63,808 |
Region 73.1 | lanthipeptide-class-i | 38,931 | 63,438 | chejuenolide A / chejuenolide B | Polyketide | 7%
Region 105.1 | siderophore | 1 | 9,341 |

No secondary metabolite regions were found in these records:
  NPCF01000001.1
  NPCF01000002.1
  NPCF01000003.1
  NPCF01000004.1
  NPCF01000005.1
  NPCF01000006.1
  NPCF01000007.1
  NPCF01000008.1
  NPCF01000009.1
  NPCF01000010.1
  NPCF01000011.1
  NPCF01000012.1
  NPCF01000014.1
  NPCF01000015.1
  NPCF01000016.1
  NPCF01000020.1
  NPCF01000021.1
  NPCF01000022.1
  NPCF01000023.1
  NPCF01000024.1
  NPCF01000025.1
  NPCF01000026.1
  NPCF01000027.1
  NPCF01000028.1
  NPCF01000029.1
  NPCF01000030.1
  NPCF01000031.1
  NPCF01000032.1
  NPCF01000033.1
  NPCF01000034.1
  NPCF01000035.1
  NPCF01000036.1
  NPCF01000037.1
  NPCF01000038.1
  NPCF01000039.1
  NPCF01000040.1
  NPCF01000041.1
  NPCF01000042.1
  NPCF01000043.1
  NPCF01000044.1
  NPCF01000046.1
  NPCF01000048.1
  NPCF01000049.1
  NPCF01000051.1
  NPCF01000052.1
  NPCF01000053.1
  NPCF01000054.1
  NPCF01000055.1
  NPCF01000056.1
  NPCF01000057.1
  NPCF01000058.1
  NPCF01000060.1
  NPCF01000061.1
  NPCF01000062.1
  NPCF01000063.1
  NPCF01000064.1
  NPCF01000066.1
  NPCF01000067.1
  NPCF01000068.1
  NPCF01000069.1
  NPCF01000070.1
  NPCF01000071.1
  NPCF01000072.1
  NPCF01000073.1
  NPCF01000074.1
  NPCF01000075.1
  NPCF01000076.1
  NPCF01000077.1
  NPCF01000078.1
  NPCF01000079.1
  NPCF01000081.1
  NPCF01000082.1
  NPCF01000083.1
  NPCF01000084.1
  NPCF01000085.1
  NPCF01000086.1
  NPCF01000087.1
  NPCF01000088.1
  NPCF01000090.1
  NPCF01000091.1
  NPCF01000092.1
  NPCF01000093.1
  NPCF01000094.1
  NPCF01000095.1
  NPCF01000096.1
  NPCF01000097.1
  NPCF01000098.1
  NPCF01000099.1
  NPCF01000100.1
  NPCF01000101.1
  NPCF01000102.1
  NPCF01000103.1
  NPCF01000104.1
  NPCF01000105.1
  NPCF01000106.1
  NPCF01000107.1
  NPCF01000108.1
  NPCF01000109.1
  NPCF01000110.1
  NPCF01000111.1
  NPCF01000112.1
  NPCF01000114.1
  NPCF01000115.1
  NPCF01000116.1
  NPCF01000117.1
  NPCF01000118.1
  NPCF01000119.1
  NPCF01000120.1
  NPCF01000121.1
  NPCF01000122.1
  NPCF01000123.1
  NPCF01000124.1
  NPCF01000125.1
  NPCF01000126.1
  NPCF01000127.1
  NPCF01000128.1
  NPCF01000129.1
  NPCF01000130.1

Compact view
NPCF01000013.1 - Region 1 - ectoine,lanthipeptide-class-iii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 40,415 - 64,178 nt. (total: 23,764 nt) Show pHMM detection rules used
ectoine: ectoine_synt
lanthipeptide-class-iii: (micKC and not PKS_KS)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
KnownClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.

#### Lanthipeptide(s) for ctg13_48 - Putative Class III

ctg13_49 leader / core peptide
  MNQVLELQKLSYNEESGQPAVD - KDhbPDhb DhbFDhb Dhb Dhb Dhb DhbIDhb DhbLDha DhbVDhaNNC
ctg13_50 leader / core peptide
  MNQVLELQKLSYNEESGQPAVD - KDhbPDhb DhbFDhb Dhb Dhb Dhb DhbIDhb DhbLDha DhbVDhaQNC

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg13_49 - Class III
  Cleavage pHMM score: 2.60
  RODEO score: 0
  Monoisotopic mass: 2098.1 Da
  Molecular weight: 2099.3 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    2117.3 Da N = 1
    2135.3 Da N = 2
    2153.4 Da N = 3
    2171.4 Da N = 4
    2189.4 Da N = 5
    2207.4 Da N = 6
    2225.4 Da N = 7
    2243.5 Da N = 8
    2261.5 Da N = 9
    2279.5 Da N = 10
    2297.5 Da N = 11
    2315.5 Da N = 12
ctg13_50 - Class III
  Cleavage pHMM score: 2.60
  RODEO score: 0
  Monoisotopic mass: 2112.2 Da
  Molecular weight: 2113.3 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    2131.4 Da N = 1
    2149.4 Da N = 2
    2167.4 Da N = 3
    2185.4 Da N = 4
    2203.4 Da N = 5
    2221.5 Da N = 6
    2239.5 Da N = 7
    2257.5 Da N = 8
    2275.5 Da N = 9
    2293.5 Da N = 10
    2311.6 Da N = 11
    2329.6 Da N = 12

NPCF01000059.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 22,708 - 63,808 nt. (total: 41,101 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

NPCF01000080.1 - Region 1 - lanthipeptide-class-i
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 38,931 - 63,438 nt. (total: 24,508 nt) Show pHMM detection rules used
lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
KnownClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptides - No core peptides found.
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.
NPCF01000113.1 - Region 1 - siderophore
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 9,341 nt. (total: 9,341 nt) Show pHMM detection rules used
Region on contig edge.
siderophore: IucA_IucC

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.