GCA_002271555.1 - 6 region(s)

Identified primary metabolite regions

NPCF01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Fumarate2succinate	SCFA	12,929	31,863	Acetate to butyrate C. sporogenes	BUT	33%

NPCF01000004.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	5,805	31,113

NPCF01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	20,253	52,855

NPCF01000027.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	fatty_acids-unassigned,Putrescine2spermidine	Aliphatic_amine	18,573	50,025	Acetate to butyrate C. sporogenes	BUT	50%

NPCF01000030.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Nitrate_reductase	E-MGC	23,801	50,245	Nitrate reductase E. coli	NIR	60%

NPCF01000107.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 99.1	fatty_acids-unassigned	Putative	2,098	27,466	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: NPCF01000001.1; NPCF01000002.1; NPCF01000005.1; NPCF01000007.1; NPCF01000008.1; NPCF01000009.1; NPCF01000010.1; NPCF01000011.1; NPCF01000012.1; NPCF01000013.1; NPCF01000014.1; NPCF01000015.1; NPCF01000016.1; NPCF01000020.1; NPCF01000021.1; NPCF01000022.1; NPCF01000023.1; NPCF01000024.1; NPCF01000025.1; NPCF01000026.1; NPCF01000028.1; NPCF01000029.1; NPCF01000031.1; NPCF01000032.1; NPCF01000033.1; NPCF01000034.1; NPCF01000035.1; NPCF01000036.1; NPCF01000037.1; NPCF01000038.1; NPCF01000039.1; NPCF01000040.1; NPCF01000041.1; NPCF01000042.1; NPCF01000043.1; NPCF01000044.1; NPCF01000046.1; NPCF01000048.1; NPCF01000049.1; NPCF01000051.1; NPCF01000052.1; NPCF01000053.1; NPCF01000054.1; NPCF01000055.1; NPCF01000056.1; NPCF01000057.1; NPCF01000058.1; NPCF01000059.1; NPCF01000060.1; NPCF01000061.1; NPCF01000062.1; NPCF01000063.1; NPCF01000064.1; NPCF01000066.1; NPCF01000067.1; NPCF01000068.1; NPCF01000069.1; NPCF01000070.1; NPCF01000071.1; NPCF01000072.1; NPCF01000073.1; NPCF01000074.1; NPCF01000075.1; NPCF01000076.1; NPCF01000077.1; NPCF01000078.1; NPCF01000079.1; NPCF01000080.1; NPCF01000081.1; NPCF01000082.1; NPCF01000083.1; NPCF01000084.1; NPCF01000085.1; NPCF01000086.1; NPCF01000087.1; NPCF01000088.1; NPCF01000090.1; NPCF01000091.1; NPCF01000092.1; NPCF01000093.1; NPCF01000094.1; NPCF01000095.1; NPCF01000096.1; NPCF01000097.1; NPCF01000098.1; NPCF01000099.1; NPCF01000100.1; NPCF01000101.1; NPCF01000102.1; NPCF01000103.1; NPCF01000104.1; NPCF01000105.1; NPCF01000106.1; NPCF01000108.1; NPCF01000109.1; NPCF01000110.1; NPCF01000111.1; NPCF01000112.1; NPCF01000113.1; NPCF01000114.1; NPCF01000115.1; NPCF01000116.1; NPCF01000117.1; NPCF01000118.1; NPCF01000119.1; NPCF01000120.1; NPCF01000121.1; NPCF01000122.1; NPCF01000123.1; NPCF01000124.1; NPCF01000125.1; NPCF01000126.1; NPCF01000127.1; NPCF01000128.1; NPCF01000129.1; NPCF01000130.1

Compact view

NPCF01000003.1 - Region 1 - Fumarate2succinate

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Location: 12,929 - 31,863 nt. (total: 18,935 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCF01000004.1 - Region 1 - TPP_AA_metabolism

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Location: 5,805 - 31,113 nt. (total: 25,309 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPCF01000006.1 - Region 1 - TPP_AA_metabolism

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Location: 20,253 - 52,855 nt. (total: 32,603 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPCF01000027.1 - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

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Location: 18,573 - 50,025 nt. (total: 31,453 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCF01000030.1 - Region 1 - Nitrate_reductase

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Location: 23,801 - 50,245 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCF01000107.1 - Region 1 - fatty_acids-unassigned

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Location: 2,098 - 27,466 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters