GCA_002272085.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

NPBN01000007.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	lanthipeptide-class-i	99,615	124,122

NPBN01000018.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	siderophore	34,267	42,875

NPBN01000028.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	ectoine,lanthipeptide-class-iii	5,182	27,909	ectoine	Other	75%

NPBN01000048.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	T3PKS	1	24,183

Region	Type	From	To	Most similar known cluster	Similarity
Region 6.1	lanthipeptide-class-i	99,615	124,122
Region 17.1	siderophore	34,267	42,875
Region 27.1	ectoine,lanthipeptide-class-iii	5,182	27,909	ectoine	Other	75%
Region 44.1	T3PKS	1	24,183

No secondary metabolite regions were found in these records:: NPBN01000001.1; NPBN01000002.1; NPBN01000003.1; NPBN01000005.1; NPBN01000006.1; NPBN01000008.1; NPBN01000009.1; NPBN01000010.1; NPBN01000011.1; NPBN01000012.1; NPBN01000013.1; NPBN01000014.1; NPBN01000015.1; NPBN01000016.1; NPBN01000017.1; NPBN01000019.1; NPBN01000020.1; NPBN01000021.1; NPBN01000022.1; NPBN01000023.1; NPBN01000024.1; NPBN01000025.1; NPBN01000026.1; NPBN01000027.1; NPBN01000032.1; NPBN01000033.1; NPBN01000034.1; NPBN01000035.1; NPBN01000036.1; NPBN01000037.1; NPBN01000038.1; NPBN01000039.1; NPBN01000040.1; NPBN01000041.1; NPBN01000042.1; NPBN01000043.1; NPBN01000044.1; NPBN01000045.1; NPBN01000046.1; NPBN01000047.1; NPBN01000049.1; NPBN01000050.1; NPBN01000051.1; NPBN01000052.1; NPBN01000053.1; NPBN01000054.1; NPBN01000055.1; NPBN01000056.1; NPBN01000057.1; NPBN01000058.1; NPBN01000059.1; NPBN01000060.1; NPBN01000061.1; NPBN01000062.1; NPBN01000063.1; NPBN01000064.1; NPBN01000065.1; NPBN01000066.1; NPBN01000067.1; NPBN01000068.1; NPBN01000069.1; NPBN01000070.1; NPBN01000071.1; NPBN01000072.1; NPBN01000073.1; NPBN01000074.1; NPBN01000076.1; NPBN01000078.1; NPBN01000079.1; NPBN01000080.1; NPBN01000081.1; NPBN01000082.1; NPBN01000083.1; NPBN01000084.1; NPBN01000085.1; NPBN01000086.1; NPBN01000087.1; NPBN01000088.1; NPBN01000089.1; NPBN01000090.1; NPBN01000091.1; NPBN01000092.1; NPBN01000093.1; NPBN01000094.1; NPBN01000095.1; NPBN01000096.1; NPBN01000097.1; NPBN01000098.1; NPBN01000099.1; NPBN01000100.1; NPBN01000101.1; NPBN01000102.1; NPBN01000103.1; NPBN01000104.1; NPBN01000105.1; NPBN01000106.1; NPBN01000107.1; NPBN01000108.1; NPBN01000109.1; NPBN01000110.1; NPBN01000111.1; NPBN01000112.1; NPBN01000113.1; NPBN01000114.1; NPBN01000115.1; NPBN01000116.1; NPBN01000117.1

Compact view

NPBN01000007.1 - Region 1 - lanthipeptide-class-i

Download region GenBank file

Download region SVG

Location: 99,615 - 124,122 nt. (total: 24,508 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg6_109 - Putative Class I

ctg6_110 leader / core peptide: MEKAFDLDLEVVHTKAKDVQPD - FDhbDhaVDhaFCDhbPGCGEDhbGDhaFNDhaFCC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

ctg6_110 - Class I

Cleavage pHMM score: 8.10

RODEO score: 32

Monoisotopic mass: 2107.9 Da

Molecular weight: 2109.4 Da

Number of bridges: 3

Additional modifications: AviCys

Alternative weights: (assuming N unmodified Ser/Thr residues); 2127.4 Da N = 1; 2145.4 Da N = 2; 2163.4 Da N = 3

NPBN01000018.1 - Region 1 - siderophore

Download region GenBank file

Download region SVG

Location: 34,267 - 42,875 nt. (total: 8,609 nt) Show pHMM detection rules used

Region on contig edge.

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

NPBN01000028.1 - Region 1 - ectoine,lanthipeptide-class-iii

Download region GenBank file

Download region SVG

Location: 5,182 - 27,909 nt. (total: 22,728 nt) Show pHMM detection rules used

Region on contig edge.

ectoine: ectoine_synt
lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg27_17 - Putative Class III

allorf_19057_19200 leader / core peptide: VTTMNQVLELQKLSYNEESGQPAVD - KDhbPDhbDhbFDhbDhbDhbDhbDhbIDhbDhbLDhaDhbVDhaNNC
allorf_19273_19416 leader / core peptide: VKKMNQVLELQKLSYNEESGQPAVD - KDhbPDhbDhbFDhbDhbDhbDhbDhbIDhbDhbLDhaDhbVDhaQNC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

allorf_19057_19200 - Class III

Cleavage pHMM score: 2.60

RODEO score: 0

Monoisotopic mass: 2098.1 Da

Molecular weight: 2099.3 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2117.3 Da N = 1; 2135.3 Da N = 2; 2153.4 Da N = 3; 2171.4 Da N = 4; 2189.4 Da N = 5; 2207.4 Da N = 6; 2225.4 Da N = 7; 2243.5 Da N = 8; 2261.5 Da N = 9; 2279.5 Da N = 10; 2297.5 Da N = 11; 2315.5 Da N = 12

allorf_19273_19416 - Class III

Cleavage pHMM score: 2.60

RODEO score: 0

Monoisotopic mass: 2112.2 Da

Molecular weight: 2113.3 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2131.4 Da N = 1; 2149.4 Da N = 2; 2167.4 Da N = 3; 2185.4 Da N = 4; 2203.4 Da N = 5; 2221.5 Da N = 6; 2239.5 Da N = 7; 2257.5 Da N = 8; 2275.5 Da N = 9; 2293.5 Da N = 10; 2311.6 Da N = 11; 2329.6 Da N = 12

NPBN01000048.1 - Region 1 - T3PKS

Download region GenBank file

Download region SVG

Location: 1 - 24,183 nt. (total: 24,183 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.