GCA_002272085.1 - 6 region(s)

Identified primary metabolite regions

NPBN01000016.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Putrescine2spermidine,fatty_acids-unassigned	Putative	166,213	197,685	Acetate to butyrate C. sporogenes	BUT	50%

NPBN01000058.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Fumarate2succinate	SCFA	12,916	31,800	Acetate to butyrate C. sporogenes	BUT	33%

NPBN01000059.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	TPP_AA_metabolism	Putative	1	23,609

NPBN01000061.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 57.1	fatty_acids-unassigned	Putative	26,075	51,443	Acetate to butyrate C. sporogenes	BUT	33%

NPBN01000068.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	Nitrate_reductase	E-MGC	30,715	57,159	Nitrate reductase E. coli	NIR	60%

NPBN01000078.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	TPP_AA_metabolism	Putative	1	32,674

No primary metabolite regions were found in these records:: NPBN01000001.1; NPBN01000002.1; NPBN01000003.1; NPBN01000005.1; NPBN01000006.1; NPBN01000007.1; NPBN01000008.1; NPBN01000009.1; NPBN01000010.1; NPBN01000011.1; NPBN01000012.1; NPBN01000013.1; NPBN01000014.1; NPBN01000015.1; NPBN01000017.1; NPBN01000018.1; NPBN01000019.1; NPBN01000020.1; NPBN01000021.1; NPBN01000022.1; NPBN01000023.1; NPBN01000024.1; NPBN01000025.1; NPBN01000026.1; NPBN01000027.1; NPBN01000028.1; NPBN01000032.1; NPBN01000033.1; NPBN01000034.1; NPBN01000035.1; NPBN01000036.1; NPBN01000037.1; NPBN01000038.1; NPBN01000039.1; NPBN01000040.1; NPBN01000041.1; NPBN01000042.1; NPBN01000043.1; NPBN01000044.1; NPBN01000045.1; NPBN01000046.1; NPBN01000047.1; NPBN01000048.1; NPBN01000049.1; NPBN01000050.1; NPBN01000051.1; NPBN01000052.1; NPBN01000053.1; NPBN01000054.1; NPBN01000055.1; NPBN01000056.1; NPBN01000057.1; NPBN01000060.1; NPBN01000062.1; NPBN01000063.1; NPBN01000064.1; NPBN01000065.1; NPBN01000066.1; NPBN01000067.1; NPBN01000069.1; NPBN01000070.1; NPBN01000071.1; NPBN01000072.1; NPBN01000073.1; NPBN01000074.1; NPBN01000076.1; NPBN01000079.1; NPBN01000080.1; NPBN01000081.1; NPBN01000082.1; NPBN01000083.1; NPBN01000084.1; NPBN01000085.1; NPBN01000086.1; NPBN01000087.1; NPBN01000088.1; NPBN01000089.1; NPBN01000090.1; NPBN01000091.1; NPBN01000092.1; NPBN01000093.1; NPBN01000094.1; NPBN01000095.1; NPBN01000096.1; NPBN01000097.1; NPBN01000098.1; NPBN01000099.1; NPBN01000100.1; NPBN01000101.1; NPBN01000102.1; NPBN01000103.1; NPBN01000104.1; NPBN01000105.1; NPBN01000106.1; NPBN01000107.1; NPBN01000108.1; NPBN01000109.1; NPBN01000110.1; NPBN01000111.1; NPBN01000112.1; NPBN01000113.1; NPBN01000114.1; NPBN01000115.1; NPBN01000116.1; NPBN01000117.1

Compact view

NPBN01000016.1 - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

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Location: 166,213 - 197,685 nt. (total: 31,473 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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NPBN01000058.1 - Region 1 - Fumarate2succinate

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Location: 12,916 - 31,800 nt. (total: 18,885 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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NPBN01000059.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 23,609 nt. (total: 23,609 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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NPBN01000061.1 - Region 1 - fatty_acids-unassigned

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Location: 26,075 - 51,443 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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NPBN01000068.1 - Region 1 - Nitrate_reductase

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Location: 30,715 - 57,159 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPBN01000078.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 32,674 nt. (total: 32,674 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

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