GCA_002272445.1 - 5 region(s)

Identified primary metabolite regions

NPCH01000022.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Putrescine2spermidine,fatty_acids-unassigned	Putative	79,247	110,699	Acetate to butyrate C. sporogenes	BUT	50%

NPCH01000024.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_AA_metabolism	Putative	73,395	98,703

NPCH01000025.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Fumarate2succinate	SCFA	1	18,871	Acetate to butyrate C. sporogenes	BUT	33%

NPCH01000032.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Nitrate_reductase	E-MGC	48,725	75,169	Nitrate reductase E. coli	NIR	60%

NPCH01000095.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 83.1	fatty_acids-unassigned	Putative	17,699	43,067	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: NPCH01000001.1; NPCH01000005.1; NPCH01000006.1; NPCH01000007.1; NPCH01000008.1; NPCH01000009.1; NPCH01000010.1; NPCH01000011.1; NPCH01000013.1; NPCH01000014.1; NPCH01000015.1; NPCH01000016.1; NPCH01000017.1; NPCH01000018.1; NPCH01000019.1; NPCH01000020.1; NPCH01000021.1; NPCH01000023.1; NPCH01000026.1; NPCH01000028.1; NPCH01000029.1; NPCH01000030.1; NPCH01000031.1; NPCH01000033.1; NPCH01000034.1; NPCH01000035.1; NPCH01000036.1; NPCH01000037.1; NPCH01000038.1; NPCH01000039.1; NPCH01000040.1; NPCH01000041.1; NPCH01000042.1; NPCH01000043.1; NPCH01000044.1; NPCH01000045.1; NPCH01000046.1; NPCH01000047.1; NPCH01000048.1; NPCH01000049.1; NPCH01000051.1; NPCH01000053.1; NPCH01000054.1; NPCH01000055.1; NPCH01000056.1; NPCH01000057.1; NPCH01000059.1; NPCH01000060.1; NPCH01000061.1; NPCH01000062.1; NPCH01000064.1; NPCH01000065.1; NPCH01000066.1; NPCH01000067.1; NPCH01000068.1; NPCH01000070.1; NPCH01000071.1; NPCH01000072.1; NPCH01000073.1; NPCH01000074.1; NPCH01000075.1; NPCH01000076.1; NPCH01000077.1; NPCH01000079.1; NPCH01000080.1; NPCH01000082.1; NPCH01000083.1; NPCH01000084.1; NPCH01000085.1; NPCH01000086.1; NPCH01000087.1; NPCH01000088.1; NPCH01000089.1; NPCH01000090.1; NPCH01000091.1; NPCH01000092.1; NPCH01000093.1; NPCH01000094.1; NPCH01000096.1; NPCH01000097.1; NPCH01000098.1; NPCH01000100.1; NPCH01000101.1; NPCH01000102.1; NPCH01000103.1; NPCH01000104.1; NPCH01000105.1; NPCH01000106.1; NPCH01000107.1; NPCH01000108.1; NPCH01000109.1; NPCH01000110.1; NPCH01000111.1; NPCH01000112.1; NPCH01000113.1; NPCH01000114.1; NPCH01000116.1; NPCH01000117.1; NPCH01000118.1; NPCH01000119.1; NPCH01000121.1; NPCH01000122.1; NPCH01000123.1; NPCH01000124.1; NPCH01000125.1; NPCH01000126.1; NPCH01000127.1; NPCH01000128.1; NPCH01000129.1; NPCH01000130.1; NPCH01000131.1; NPCH01000132.1; NPCH01000133.1; NPCH01000134.1; NPCH01000135.1; NPCH01000136.1; NPCH01000137.1; NPCH01000138.1; NPCH01000139.1; NPCH01000140.1; NPCH01000141.1; NPCH01000142.1; NPCH01000143.1; NPCH01000144.1; NPCH01000145.1; NPCH01000146.1; NPCH01000147.1; NPCH01000148.1; NPCH01000149.1; NPCH01000150.1; NPCH01000151.1; NPCH01000152.1; NPCH01000153.1; NPCH01000154.1; NPCH01000155.1; NPCH01000156.1; NPCH01000158.1; NPCH01000159.1; NPCH01000160.1; NPCH01000161.1; NPCH01000162.1; NPCH01000163.1; NPCH01000164.1; NPCH01000165.1

Compact view

NPCH01000022.1 - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

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Location: 79,247 - 110,699 nt. (total: 31,453 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCH01000024.1 - Region 1 - TPP_AA_metabolism

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Location: 73,395 - 98,703 nt. (total: 25,309 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPCH01000025.1 - Region 1 - Fumarate2succinate

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Location: 1 - 18,871 nt. (total: 18,871 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCH01000032.1 - Region 1 - Nitrate_reductase

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Location: 48,725 - 75,169 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCH01000095.1 - Region 1 - fatty_acids-unassigned

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Location: 17,699 - 43,067 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters