GCA_002272545.1 - 7 region(s)

Identified primary metabolite regions

NPCB01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Nitrate_reductase	E-MGC	23,795	50,239	Nitrate reductase E. coli	NIR	60%

NPCB01000020.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	fatty_acids-unassigned	Putative	65,818	82,587	Acetate to butyrate C. sporogenes	BUT	50%

NPCB01000029.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	TPP_AA_metabolism	Putative	83,054	108,362

NPCB01000031.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Fumarate2succinate	SCFA	1	18,863	Acetate to butyrate C. sporogenes	BUT	33%

NPCB01000042.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Putrescine2spermidine	Aliphatic_amine	62,286	77,010	Arginine degradation C. sticklandii	ARG	22%

NPCB01000066.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	TPP_AA_metabolism	Putative	20,002	52,645

NPCB01000098.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 91.1	fatty_acids-unassigned	Putative	19,553	44,921	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: NPCB01000001.1; NPCB01000002.1; NPCB01000004.1; NPCB01000005.1; NPCB01000006.1; NPCB01000007.1; NPCB01000008.1; NPCB01000009.1; NPCB01000010.1; NPCB01000011.1; NPCB01000012.1; NPCB01000013.1; NPCB01000014.1; NPCB01000015.1; NPCB01000016.1; NPCB01000017.1; NPCB01000018.1; NPCB01000019.1; NPCB01000021.1; NPCB01000022.1; NPCB01000023.1; NPCB01000024.1; NPCB01000025.1; NPCB01000026.1; NPCB01000027.1; NPCB01000028.1; NPCB01000030.1; NPCB01000032.1; NPCB01000033.1; NPCB01000035.1; NPCB01000037.1; NPCB01000038.1; NPCB01000039.1; NPCB01000040.1; NPCB01000041.1; NPCB01000043.1; NPCB01000044.1; NPCB01000045.1; NPCB01000047.1; NPCB01000048.1; NPCB01000049.1; NPCB01000050.1; NPCB01000051.1; NPCB01000052.1; NPCB01000053.1; NPCB01000054.1; NPCB01000055.1; NPCB01000056.1; NPCB01000057.1; NPCB01000058.1; NPCB01000059.1; NPCB01000060.1; NPCB01000061.1; NPCB01000062.1; NPCB01000063.1; NPCB01000064.1; NPCB01000065.1; NPCB01000067.1; NPCB01000068.1; NPCB01000069.1; NPCB01000070.1; NPCB01000071.1; NPCB01000075.1; NPCB01000076.1; NPCB01000077.1; NPCB01000078.1; NPCB01000079.1; NPCB01000080.1; NPCB01000081.1; NPCB01000082.1; NPCB01000084.1; NPCB01000085.1; NPCB01000086.1; NPCB01000087.1; NPCB01000088.1; NPCB01000089.1; NPCB01000090.1; NPCB01000091.1; NPCB01000092.1; NPCB01000093.1; NPCB01000094.1; NPCB01000095.1; NPCB01000096.1; NPCB01000097.1; NPCB01000099.1; NPCB01000100.1; NPCB01000101.1; NPCB01000102.1; NPCB01000104.1; NPCB01000105.1; NPCB01000106.1; NPCB01000107.1; NPCB01000108.1; NPCB01000109.1; NPCB01000110.1; NPCB01000111.1; NPCB01000112.1; NPCB01000114.1; NPCB01000115.1; NPCB01000116.1; NPCB01000117.1; NPCB01000118.1; NPCB01000119.1; NPCB01000120.1; NPCB01000121.1; NPCB01000122.1; NPCB01000123.1; NPCB01000125.1; NPCB01000126.1; NPCB01000127.1; NPCB01000128.1; NPCB01000129.1; NPCB01000130.1; NPCB01000131.1; NPCB01000132.1; NPCB01000133.1; NPCB01000134.1; NPCB01000135.1; NPCB01000136.1; NPCB01000137.1

Compact view

NPCB01000003.1 - Region 1 - Nitrate_reductase

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Location: 23,795 - 50,239 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCB01000020.1 - Region 1 - fatty_acids-unassigned

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Location: 65,818 - 82,587 nt. (total: 16,770 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCB01000029.1 - Region 1 - TPP_AA_metabolism

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Location: 83,054 - 108,362 nt. (total: 25,309 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPCB01000031.1 - Region 1 - Fumarate2succinate

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Location: 1 - 18,863 nt. (total: 18,863 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCB01000042.1 - Region 1 - Putrescine2spermidine

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Location: 62,286 - 77,010 nt. (total: 14,725 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPCB01000066.1 - Region 1 - TPP_AA_metabolism

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Location: 20,002 - 52,645 nt. (total: 32,644 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPCB01000098.1 - Region 1 - fatty_acids-unassigned

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Location: 19,553 - 44,921 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters