GCA_002272605.1 - 6 region(s)

Identified primary metabolite regions

NPBX01000017.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Putrescine2spermidine,fatty_acids-unassigned	Putative	79,238	110,690	Acetate to butyrate C. sporogenes	BUT	50%

NPBX01000022.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Fumarate2succinate	SCFA	12,941	31,812	Acetate to butyrate C. sporogenes	BUT	33%

NPBX01000023.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_AA_metabolism	Putative	5,817	31,125

NPBX01000026.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Nitrate_reductase	E-MGC	23,801	50,245	Nitrate reductase E. coli	NIR	60%

NPBX01000070.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 61.1	fatty_acids-unassigned	Putative	2,517	27,885	Acetate to butyrate C. sporogenes	BUT	33%

NPBX01000090.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 80.1	TPP_AA_metabolism	Putative	1	29,860

No primary metabolite regions were found in these records:: NPBX01000001.1; NPBX01000002.1; NPBX01000003.1; NPBX01000007.1; NPBX01000008.1; NPBX01000009.1; NPBX01000010.1; NPBX01000011.1; NPBX01000012.1; NPBX01000013.1; NPBX01000014.1; NPBX01000015.1; NPBX01000016.1; NPBX01000018.1; NPBX01000019.1; NPBX01000020.1; NPBX01000021.1; NPBX01000024.1; NPBX01000025.1; NPBX01000027.1; NPBX01000028.1; NPBX01000029.1; NPBX01000030.1; NPBX01000031.1; NPBX01000033.1; NPBX01000034.1; NPBX01000035.1; NPBX01000036.1; NPBX01000037.1; NPBX01000038.1; NPBX01000040.1; NPBX01000042.1; NPBX01000043.1; NPBX01000046.1; NPBX01000047.1; NPBX01000048.1; NPBX01000049.1; NPBX01000050.1; NPBX01000051.1; NPBX01000052.1; NPBX01000053.1; NPBX01000055.1; NPBX01000056.1; NPBX01000057.1; NPBX01000058.1; NPBX01000059.1; NPBX01000060.1; NPBX01000061.1; NPBX01000062.1; NPBX01000063.1; NPBX01000064.1; NPBX01000065.1; NPBX01000066.1; NPBX01000067.1; NPBX01000068.1; NPBX01000069.1; NPBX01000071.1; NPBX01000072.1; NPBX01000073.1; NPBX01000074.1; NPBX01000075.1; NPBX01000076.1; NPBX01000077.1; NPBX01000078.1; NPBX01000079.1; NPBX01000080.1; NPBX01000081.1; NPBX01000082.1; NPBX01000083.1; NPBX01000084.1; NPBX01000085.1; NPBX01000086.1; NPBX01000088.1; NPBX01000089.1; NPBX01000091.1; NPBX01000092.1; NPBX01000093.1; NPBX01000094.1; NPBX01000095.1; NPBX01000096.1; NPBX01000097.1; NPBX01000098.1; NPBX01000099.1; NPBX01000100.1; NPBX01000101.1; NPBX01000102.1; NPBX01000103.1; NPBX01000104.1; NPBX01000105.1; NPBX01000106.1; NPBX01000107.1; NPBX01000108.1; NPBX01000109.1; NPBX01000110.1; NPBX01000111.1; NPBX01000112.1; NPBX01000113.1; NPBX01000114.1; NPBX01000115.1; NPBX01000116.1; NPBX01000117.1; NPBX01000118.1; NPBX01000119.1; NPBX01000120.1; NPBX01000121.1; NPBX01000122.1; NPBX01000123.1; NPBX01000124.1; NPBX01000125.1; NPBX01000126.1; NPBX01000127.1; NPBX01000128.1; NPBX01000129.1; NPBX01000130.1; NPBX01000131.1; NPBX01000132.1; NPBX01000133.1; NPBX01000134.1; NPBX01000135.1

Compact view

NPBX01000017.1 - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

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Location: 79,238 - 110,690 nt. (total: 31,453 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPBX01000022.1 - Region 1 - Fumarate2succinate

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Location: 12,941 - 31,812 nt. (total: 18,872 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPBX01000023.1 - Region 1 - TPP_AA_metabolism

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Location: 5,817 - 31,125 nt. (total: 25,309 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPBX01000026.1 - Region 1 - Nitrate_reductase

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Location: 23,801 - 50,245 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPBX01000070.1 - Region 1 - fatty_acids-unassigned

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Location: 2,517 - 27,885 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NPBX01000090.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 29,860 nt. (total: 29,860 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.