GCA_002272655.1 - 6 region(s)

Identified primary metabolite regions

NPMP01000005.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Fumarate2succinate	SCFA	12,911	35,066	Acetate to butyrate C. sporogenes	BUT	33%

NPMP01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	1	19,908

NPMP01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_AA_metabolism	Putative	4,663	41,933

NPMP01000019.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Putrescine2spermidine,fatty_acids-unassigned	Putative	25,806	57,272	Acetate to butyrate C. sporogenes	BUT	50%

NPMP01000046.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	Nitrate_reductase	E-MGC	112,003	138,447	Nitrate reductase E. coli	NIR	60%

NPMP01000068.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	fatty_acids-unassigned	Putative	6,155	31,523	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: NPMP01000001.1; NPMP01000002.1; NPMP01000003.1; NPMP01000004.1; NPMP01000007.1; NPMP01000009.1; NPMP01000010.1; NPMP01000011.1; NPMP01000012.1; NPMP01000013.1; NPMP01000014.1; NPMP01000016.1; NPMP01000018.1; NPMP01000020.1; NPMP01000021.1; NPMP01000022.1; NPMP01000023.1; NPMP01000024.1; NPMP01000025.1; NPMP01000026.1; NPMP01000027.1; NPMP01000028.1; NPMP01000029.1; NPMP01000030.1; NPMP01000031.1; NPMP01000032.1; NPMP01000033.1; NPMP01000034.1; NPMP01000035.1; NPMP01000037.1; NPMP01000038.1; NPMP01000039.1; NPMP01000040.1; NPMP01000041.1; NPMP01000042.1; NPMP01000043.1; NPMP01000044.1; NPMP01000045.1; NPMP01000047.1; NPMP01000048.1; NPMP01000049.1; NPMP01000050.1; NPMP01000051.1; NPMP01000052.1; NPMP01000053.1; NPMP01000054.1; NPMP01000055.1; NPMP01000056.1; NPMP01000057.1; NPMP01000058.1; NPMP01000059.1; NPMP01000060.1; NPMP01000061.1; NPMP01000062.1; NPMP01000063.1; NPMP01000064.1; NPMP01000065.1; NPMP01000066.1; NPMP01000067.1; NPMP01000069.1; NPMP01000070.1; NPMP01000071.1; NPMP01000072.1; NPMP01000073.1; NPMP01000074.1; NPMP01000075.1; NPMP01000076.1; NPMP01000077.1; NPMP01000078.1; NPMP01000079.1; NPMP01000080.1; NPMP01000081.1; NPMP01000082.1; NPMP01000083.1; NPMP01000084.1; NPMP01000085.1; NPMP01000086.1; NPMP01000087.1; NPMP01000089.1; NPMP01000090.1; NPMP01000091.1; NPMP01000092.1; NPMP01000093.1; NPMP01000094.1; NPMP01000095.1; NPMP01000096.1; NPMP01000097.1; NPMP01000098.1; NPMP01000099.1; NPMP01000100.1; NPMP01000101.1; NPMP01000102.1; NPMP01000103.1; NPMP01000104.1; NPMP01000106.1; NPMP01000107.1; NPMP01000109.1; NPMP01000110.1; NPMP01000111.1; NPMP01000112.1; NPMP01000113.1; NPMP01000114.1; NPMP01000115.1; NPMP01000116.1; NPMP01000117.1; NPMP01000118.1; NPMP01000119.1; NPMP01000120.1; NPMP01000121.1; NPMP01000122.1; NPMP01000123.1; NPMP01000124.1; NPMP01000125.1; NPMP01000126.1; NPMP01000127.1; NPMP01000128.1; NPMP01000129.1; NPMP01000130.1

Compact view

NPMP01000005.1 - Region 1 - Fumarate2succinate

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Location: 12,911 - 35,066 nt. (total: 22,156 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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KnownClusterBlast

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NPMP01000006.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 19,908 nt. (total: 19,908 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPMP01000008.1 - Region 1 - TPP_AA_metabolism

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Location: 4,663 - 41,933 nt. (total: 37,271 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NPMP01000019.1 - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

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Location: 25,806 - 57,272 nt. (total: 31,467 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

NPMP01000046.1 - Region 1 - Nitrate_reductase

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Location: 112,003 - 138,447 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

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transport-related genes

regulatory genes

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KnownClusterBlast

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NPMP01000068.1 - Region 1 - fatty_acids-unassigned

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Location: 6,155 - 31,523 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters