GCA_002398245.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

DHCO01000077.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	T3PKS	42,229	66,772

DHCO01000111.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	cyclic-lactone-autoinducer	2,751	23,347

DHCO01000033.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 101.1	NRPS,NRPS-like	1	36,149

DHCO01000026.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 131.1	RiPP-like	1	10,351

DHCO01000128.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 144.1	terpene	9,690	29,331

Region	Type	From	To	Similarity
Region 32.1	T3PKS	42,229	66,772
Region 43.1	cyclic-lactone-autoinducer	2,751	23,347
Region 101.1	NRPS,NRPS-like	1	36,149
Region 131.1	RiPP-like	1	10,351
Region 144.1	terpene	9,690	29,331

Compact view

DHCO01000077.1 - Region 1 - T3PKS

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Location: 42,229 - 66,772 nt. (total: 24,544 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

DHCO01000111.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 2,751 - 23,347 nt. (total: 20,597 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

DHCO01000033.1 - Region 1 - NRPS,NRPS-like

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Location: 1 - 36,149 nt. (total: 36,149 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 36149:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X) + (gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 242 - 36149:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X) + (gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg101_4

Search NORINE for peptide: strict or relaxed

AMP-binding (8..381): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sVtqAAvagK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)

AMP-binding (1000..1372): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DshgyGCVlK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 50% (weak)

AMP-binding (1967..2333): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLiVAaViK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

ctg101_5

Search NORINE for peptide: strict or relaxed

AMP-binding (1193..1571): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DItQmGiVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

ctg101_9

Search NORINE for peptide: strict or relaxed

AMP-binding (13..374): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vvynTAvaCK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 40% (weak)

DHCO01000026.1 - Region 1 - RiPP-like

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Location: 1 - 10,351 nt. (total: 10,351 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

DHCO01000128.1 - Region 1 - terpene

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Location: 9,690 - 29,331 nt. (total: 19,642 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.