GCA_002417605.1 - 11 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NXMB01000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T3PKS	7,033	48,199

NXMB01000013.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	furan	30,121	51,038

NXMB01000001.1

Region	Type	From	To
Region 11.1	lanthipeptide-class-ii	23,002	45,938
Region 11.2	RiPP-like	127,227	135,119
Region 11.3	RiPP-like	206,901	217,197

NXMB01000003.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	115,960	128,056

NXMB01000005.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	RaS-RiPP	55,871	79,097	thermophilin 1277	RiPP:Lanthipeptide	10%
Region 36.2	lanthipeptide-class-ii	83,433	106,216	salivaricin 9	RiPP:Lanthipeptide	72%
Region 36.3	lanthipeptide-class-iv	121,329	143,515
Region 36.4	RRE-containing	151,321	168,177

NXMB01000007.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	RaS-RiPP	25,521	47,945	streptide	RiPP	100%

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	T3PKS	7,033	48,199
Region 4.1	furan	30,121	51,038
Region 11.1	lanthipeptide-class-ii	23,002	45,938
Region 11.2	RiPP-like	127,227	135,119
Region 11.3	RiPP-like	206,901	217,197
Region 33.1	RiPP-like	115,960	128,056
Region 36.1	RaS-RiPP	55,871	79,097	thermophilin 1277	RiPP:Lanthipeptide	10%
Region 36.2	lanthipeptide-class-ii	83,433	106,216	salivaricin 9	RiPP:Lanthipeptide	72%
Region 36.3	lanthipeptide-class-iv	121,329	143,515
Region 36.4	RRE-containing	151,321	168,177
Region 38.1	RaS-RiPP	25,521	47,945	streptide	RiPP	100%

Compact view

NXMB01000012.1 - Region 1 - T3PKS

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Location: 7,033 - 48,199 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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NXMB01000013.1 - Region 1 - furan

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Location: 30,121 - 51,038 nt. (total: 20,918 nt) Show pHMM detection rules used

furan: (mmyO or AvrD)

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NXMB01000001.1 - Region 1 - lanthipeptide-class-ii

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Location: 23,002 - 45,938 nt. (total: 22,937 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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core biosynthetic genes

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg11_37 - Putative Class II

ctg11_39 leader / core peptide: MLGNDKVIDSLEFEVAQQELEGNSGA - GDhbRDhbAIRMDhbDhaQGRCGWIFDhbFDhaYECDhaANHIRCDha
ctg11_42 leader / core peptide: MSRKGNSPDNGMMESFFG - ILKDhaEMFYGYGKMFKDhaLKQLEQAIIDYINYYNQRIKVKLKLDhaDhaQGDhbYHQDhbWEDhaLCQKDDhaL
ctg11_43 leader / core peptide: MINKEEHEVIDSLEFEVSNQELEGQSGA - GWWDhbAIDhaLDhbADhaGRCGHVFDhbADhaFECDhbDhaNNVRCK
allorf_045529_045645 leader / core peptide: LVNILKSGVGA - DhbGDLDhaRDhaDhaPNHIPDDhaHDVFHCNYDhaGYL

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

ctg11_39 - Class II

Cleavage pHMM score: -3.20

RODEO score: 0

Monoisotopic mass: 3494.7 Da

Molecular weight: 3496.9 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3515.0 Da N = 1; 3533.0 Da N = 2; 3551.0 Da N = 3; 3569.0 Da N = 4; 3587.0 Da N = 5

ctg11_42 - Class II

Cleavage pHMM score: -3.20

RODEO score: 0

Monoisotopic mass: 7051.7 Da

Molecular weight: 7056.1 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 7074.1 Da N = 1; 7092.2 Da N = 2; 7110.2 Da N = 3; 7128.2 Da N = 4; 7146.2 Da N = 5; 7164.2 Da N = 6; 7182.3 Da N = 7

ctg11_43 - Class II

Cleavage pHMM score: -2.90

RODEO score: 0

Monoisotopic mass: 3344.6 Da

Molecular weight: 3346.7 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3364.8 Da N = 1; 3382.8 Da N = 2; 3400.8 Da N = 3; 3418.8 Da N = 4; 3436.8 Da N = 5

allorf_045529_045645 - Class II

Cleavage pHMM score: -4.20

RODEO score: 0

Monoisotopic mass: 2909.3 Da

Molecular weight: 2911.1 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2929.1 Da N = 1; 2947.1 Da N = 2; 2965.1 Da N = 3; 2983.1 Da N = 4; 3001.2 Da N = 5

NXMB01000001.1 - Region 2 - RiPP-like

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Location: 127,227 - 135,119 nt. (total: 7,893 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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NXMB01000001.1 - Region 3 - RiPP-like

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Location: 206,901 - 217,197 nt. (total: 10,297 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

NXMB01000003.1 - Region 1 - RiPP-like

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Location: 115,960 - 128,056 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

NXMB01000005.1 - Region 1 - RaS-RiPP

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Location: 55,871 - 79,097 nt. (total: 23,227 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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NXMB01000005.1 - Region 2 - lanthipeptide-class-ii

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Location: 83,433 - 106,216 nt. (total: 22,784 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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core biosynthetic genes

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg36_101 - Putative Class II

ctg36_102 leader / core peptide: MKSTNNQSIAEIAAVNSLQEVSMEELDQIIGA - GNGVVLDhbLDhbHECNLADhbWDhbKKLKCC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg36_102 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2559.3 Da

Molecular weight: 2561.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2579.1 Da N = 1

NXMB01000005.1 - Region 3 - lanthipeptide-class-iv

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Location: 121,329 - 143,515 nt. (total: 22,187 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

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core biosynthetic genes

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

NXMB01000005.1 - Region 4 - RRE-containing

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Location: 151,321 - 168,177 nt. (total: 16,857 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

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KnownClusterBlast

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No matches found.

NXMB01000007.1 - Region 1 - RaS-RiPP

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Location: 25,521 - 47,945 nt. (total: 22,425 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

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KnownClusterBlast

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