GCA_002796625.1 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

PHHJ01000016.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	NRPS-like	1	35,584	asukamycin	Polyketide:Type II	4%

PHHJ01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RRE-containing	137,032	157,523

PHHJ01000027.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	lanthipeptide-class-iv	9,380	23,107

PHHJ01000038.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	lanthipeptide-class-ii	616	14,638	macedocin	RiPP:Lanthipeptide	71%

PHHJ01000004.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	RaS-RiPP	56,000	78,424	streptide	RiPP	100%

PHHJ01000052.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	RiPP-like	1	2,000

PHHJ01000005.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	RiPP-like	18,896	45,399

PHHJ01000008.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	RaS-RiPP	1	17,951

Compact view

PHHJ01000016.1 - Region 1 - NRPS-like

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Location: 1 - 35,584 nt. (total: 35,584 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

PHHJ01000001.1 - Region 1 - RRE-containing

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Location: 137,032 - 157,523 nt. (total: 20,492 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

PHHJ01000027.1 - Region 1 - lanthipeptide-class-iv

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Location: 9,380 - 23,107 nt. (total: 13,728 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

PHHJ01000038.1 - Region 1 - lanthipeptide-class-ii

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Location: 616 - 14,638 nt. (total: 14,023 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg31_12 - Putative Class II

ctg31_13 leader / core peptide: MKNNNKICQDALESLQELKLEEVDELLGG - AGHGVNDhbIDhaAECRWNDhaLQAIFDhaCC
ctg31_14 leader / core peptide: MEKETTIIESIQEVSLEELDQIIGA - GKNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha
allorf_02859_02933 leader / core peptide: MKSKYSLLEAIIYT - DhaKICIGLQDF
allorf_05284_05391 leader / core peptide: VGLSYLSSNLVRYAVIGA - KIIDhaYKIEWFDhaICHNHK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg31_13 - Class II

Cleavage pHMM score: 0.40

RODEO score: 0

Monoisotopic mass: 2494.2 Da

Molecular weight: 2495.8 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2513.8 Da N = 1

ctg31_14 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2776.3 Da

Molecular weight: 2778.2 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2796.2 Da N = 1; 2814.2 Da N = 2

allorf_02859_02933 - Class II

Cleavage pHMM score: -6.40

RODEO score: 0

Monoisotopic mass: 1104.6 Da

Molecular weight: 1105.3 Da

Number of bridges: 1

allorf_05284_05391 - Class II

Cleavage pHMM score: -4.70

RODEO score: 0

Monoisotopic mass: 2109.1 Da

Molecular weight: 2110.5 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2128.5 Da N = 1

PHHJ01000004.1 - Region 1 - RaS-RiPP

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Location: 56,000 - 78,424 nt. (total: 22,425 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

PHHJ01000052.1 - Region 1 - RiPP-like

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Location: 1 - 2,000 nt. (total: 2,000 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

PHHJ01000005.1 - Region 1 - RiPP-like

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Location: 18,896 - 45,399 nt. (total: 26,504 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

PHHJ01000008.1 - Region 1 - RaS-RiPP

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Location: 1 - 17,951 nt. (total: 17,951 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.