GCA_002796655.1 - 10 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

PHHI01000010.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RaS-RiPP	1	17,953

PHHI01000018.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	NRPS-like	1	36,056	asukamycin	Polyketide:Type II	4%

PHHI01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RRE-containing	7,269	27,760

PHHI01000027.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RiPP-like	1	5,297

PHHI01000028.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	lanthipeptide-class-iv	9,384	23,583

PHHI01000036.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	lanthipeptide-class-ii	1	13,919	macedocin	RiPP:Lanthipeptide	71%

PHHI01000003.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	1	20,508

PHHI01000041.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	RiPP-like	1	6,001

PHHI01000004.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	RaS-RiPP	19,490	41,914	streptide	RiPP	100%

PHHI01000051.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 46.1	RiPP-like	1	2,382

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RaS-RiPP	1	17,953
Region 9.1	NRPS-like	1	36,056	asukamycin	Polyketide:Type II	4%
Region 11.1	RRE-containing	7,269	27,760
Region 19.1	RiPP-like	1	5,297
Region 20.1	lanthipeptide-class-iv	9,384	23,583
Region 29.1	lanthipeptide-class-ii	1	13,919	macedocin	RiPP:Lanthipeptide	71%
Region 33.1	RiPP-like	1	20,508
Region 35.1	RiPP-like	1	6,001
Region 44.1	RaS-RiPP	19,490	41,914	streptide	RiPP	100%
Region 46.1	RiPP-like	1	2,382

Compact view

PHHI01000010.1 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 1 - 17,953 nt. (total: 17,953 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

PHHI01000018.1 - Region 1 - NRPS-like

Download region GenBank file

Download region SVG

Location: 1 - 36,056 nt. (total: 36,056 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

PHHI01000001.1 - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 7,269 - 27,760 nt. (total: 20,492 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

PHHI01000027.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 1 - 5,297 nt. (total: 5,297 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

PHHI01000028.1 - Region 1 - lanthipeptide-class-iv

Download region GenBank file

Download region SVG

Location: 9,384 - 23,583 nt. (total: 14,200 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

PHHI01000036.1 - Region 1 - lanthipeptide-class-ii

Download region GenBank file

Download region SVG

Location: 1 - 13,919 nt. (total: 13,919 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg29_4 - Putative Class II

ctg29_2 leader / core peptide: MEKETTIIESIQEVSLEELDQIIGA - GKNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha
ctg29_3 leader / core peptide: MKNNNKICQDALESLQELKLEEVDELLGG - AGHGVNDhbIDhaAECRWNDhaLQAIFDhaCC
allorf_09144_09251 leader / core peptide: VGLSYLSSNLVRYAVIGA - KIIDhaYKIEWFDhaICHNHK
allorf_11602_11676 leader / core peptide: MKSKYSLLEAIIYT - DhaKICIGLQDF

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg29_2 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2776.3 Da

Molecular weight: 2778.2 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2796.2 Da N = 1; 2814.2 Da N = 2

ctg29_3 - Class II

Cleavage pHMM score: 0.40

RODEO score: 0

Monoisotopic mass: 2494.2 Da

Molecular weight: 2495.8 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2513.8 Da N = 1

allorf_09144_09251 - Class II

Cleavage pHMM score: -4.70

RODEO score: 0

Monoisotopic mass: 2109.1 Da

Molecular weight: 2110.5 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2128.5 Da N = 1

allorf_11602_11676 - Class II

Cleavage pHMM score: -6.40

RODEO score: 0

Monoisotopic mass: 1104.6 Da

Molecular weight: 1105.3 Da

Number of bridges: 1

PHHI01000003.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 1 - 20,508 nt. (total: 20,508 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

PHHI01000041.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 1 - 6,001 nt. (total: 6,001 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

PHHI01000004.1 - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 19,490 - 41,914 nt. (total: 22,425 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

PHHI01000051.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 1 - 2,382 nt. (total: 2,382 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.