GCA_003043875.1 - 5 region(s)

Identified primary metabolite regions

PZQP01000013.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	fatty_acids-unassigned	Putative	5,685	31,053	Acetate to butyrate C. sporogenes	BUT	33%

PZQP01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	TPP_AA_metabolism	Putative	52,785	78,093

PZQP01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	Fumarate2succinate	SCFA	1	22,449	Acetate to butyrate C. sporogenes	BUT	33%

PZQP01000044.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 113.1	Nitrate_reductase	E-MGC	4,378	30,510	Nitrate reductase E. coli	NIR	60%

PZQP01000085.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 181.1	Putrescine2spermidine,fatty_acids-unassigned	Putative	19,820	48,601	Acetate to butyrate C. sporogenes	BUT	50%

No primary metabolite regions were found in these records:: PZQP01000099.1; PZQP01000100.1; PZQP01000101.1; PZQP01000102.1; PZQP01000103.1; PZQP01000104.1; PZQP01000105.1; PZQP01000114.1; PZQP01000115.1; PZQP01000116.1; PZQP01000118.1; PZQP01000106.1; PZQP01000107.1; PZQP01000108.1; PZQP01000109.1; PZQP01000111.1; PZQP01000119.1; PZQP01000120.1; PZQP01000121.1; PZQP01000122.1; PZQP01000123.1; PZQP01000124.1; PZQP01000125.1; PZQP01000126.1; PZQP01000129.1; PZQP01000130.1; PZQP01000131.1; PZQP01000132.1; PZQP01000133.1; PZQP01000134.1; PZQP01000135.1; PZQP01000137.1; PZQP01000138.1; PZQP01000139.1; PZQP01000141.1; PZQP01000143.1; PZQP01000144.1; PZQP01000145.1; PZQP01000146.1; PZQP01000147.1; PZQP01000148.1; PZQP01000149.1; PZQP01000150.1; PZQP01000151.1; PZQP01000001.1; PZQP01000012.1; PZQP01000014.1; PZQP01000015.1; PZQP01000016.1; PZQP01000004.1; PZQP01000005.1; PZQP01000006.1; PZQP01000007.1; PZQP01000008.1; PZQP01000009.1; PZQP01000152.1; PZQP01000153.1; PZQP01000154.1; PZQP01000155.1; PZQP01000156.1; PZQP01000157.1; PZQP01000159.1; PZQP01000162.1; PZQP01000164.1; PZQP01000165.1; PZQP01000166.1; PZQP01000167.1; PZQP01000168.1; PZQP01000169.1; PZQP01000170.1; PZQP01000171.1; PZQP01000172.1; PZQP01000173.1; PZQP01000174.1; PZQP01000175.1; PZQP01000176.1; PZQP01000177.1; PZQP01000178.1; PZQP01000017.1; PZQP01000030.1; PZQP01000018.1; PZQP01000019.1; PZQP01000020.1; PZQP01000021.1; PZQP01000023.1; PZQP01000024.1; PZQP01000025.1; PZQP01000179.1; PZQP01000181.1; PZQP01000182.1; PZQP01000183.1; PZQP01000186.1; PZQP01000187.1; PZQP01000188.1; PZQP01000189.1; PZQP01000190.1; PZQP01000191.1; PZQP01000192.1; PZQP01000194.1; PZQP01000195.1; PZQP01000196.1; PZQP01000197.1; PZQP01000198.1; PZQP01000199.1; PZQP01000200.1; PZQP01000202.1; PZQP01000203.1; PZQP01000031.1; PZQP01000040.1; PZQP01000045.1; PZQP01000032.1; PZQP01000033.1; PZQP01000034.1; PZQP01000035.1; PZQP01000036.1; PZQP01000037.1; PZQP01000039.1; PZQP01000204.1; PZQP01000205.1; PZQP01000207.1; PZQP01000208.1; PZQP01000209.1; PZQP01000210.1; PZQP01000211.1; PZQP01000212.1; PZQP01000213.1; PZQP01000214.1; PZQP01000215.1; PZQP01000216.1; PZQP01000218.1; PZQP01000219.1; PZQP01000220.1; PZQP01000046.1; PZQP01000055.1; PZQP01000056.1; PZQP01000058.1; PZQP01000047.1; PZQP01000051.1; PZQP01000052.1; PZQP01000053.1; PZQP01000221.1; PZQP01000223.1; PZQP01000225.1; PZQP01000226.1; PZQP01000227.1; PZQP01000228.1; PZQP01000229.1; PZQP01000230.1; PZQP01000231.1; PZQP01000232.1; PZQP01000233.1; PZQP01000060.1; PZQP01000061.1; PZQP01000062.1; PZQP01000063.1; PZQP01000064.1; PZQP01000065.1; PZQP01000066.1; PZQP01000234.1; PZQP01000235.1; PZQP01000236.1; PZQP01000237.1; PZQP01000068.1; PZQP01000069.1; PZQP01000070.1; PZQP01000071.1; PZQP01000072.1; PZQP01000073.1; PZQP01000082.1; PZQP01000083.1; PZQP01000084.1; PZQP01000074.1; PZQP01000075.1; PZQP01000076.1; PZQP01000077.1; PZQP01000078.1; PZQP01000086.1; PZQP01000087.1; PZQP01000088.1; PZQP01000089.1; PZQP01000090.1; PZQP01000091.1; PZQP01000092.1; PZQP01000093.1; PZQP01000094.1; PZQP01000095.1; PZQP01000096.1

Compact view

PZQP01000013.1 - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 5,685 - 31,053 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

PZQP01000002.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 52,785 - 78,093 nt. (total: 25,309 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

PZQP01000003.1 - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 1 - 22,449 nt. (total: 22,449 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

PZQP01000044.1 - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 4,378 - 30,510 nt. (total: 26,133 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

PZQP01000085.1 - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

Download region GenBank file

Location: 19,820 - 48,601 nt. (total: 28,782 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters