GCA_003046055.1 - 3 region(s)

Identified primary metabolite regions

PZQN01000012.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	pdu	SCFA-other	16,045	54,544	Propanediol degradation S. enterica	PDU	66%

PZQN01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	TPP_AA_metabolism	Putative	32,425	69,652

PZQN01000024.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Nitrate_reductase	E-MGC	7,589	34,056	Nitrate reductase E. coli	NIR	40%

No primary metabolite regions were found in these records:: PZQN01000004.1; PZQN01000021.1; PZQN01000045.1; PZQN01000008.1; PZQN01000027.1; PZQN01000001.1; PZQN01000009.1; PZQN01000002.1; PZQN01000013.1; PZQN01000025.1; PZQN01000039.1; PZQN01000017.1; PZQN01000007.1; PZQN01000053.1; PZQN01000003.1; PZQN01000033.1; PZQN01000028.1; PZQN01000015.1; PZQN01000014.1; PZQN01000035.1; PZQN01000058.1; PZQN01000030.1; PZQN01000026.1; PZQN01000034.1; PZQN01000018.1; PZQN01000060.1; PZQN01000023.1; PZQN01000029.1; PZQN01000031.1; PZQN01000010.1; PZQN01000022.1; PZQN01000037.1; PZQN01000016.1; PZQN01000019.1; PZQN01000020.1; PZQN01000059.1; PZQN01000044.1; PZQN01000050.1; PZQN01000005.1; PZQN01000032.1; PZQN01000048.1; PZQN01000040.1; PZQN01000038.1; PZQN01000055.1; PZQN01000047.1; PZQN01000036.1; PZQN01000052.1; PZQN01000049.1; PZQN01000042.1; PZQN01000051.1; PZQN01000056.1; PZQN01000046.1; PZQN01000041.1; PZQN01000043.1; PZQN01000011.1; PZQN01000054.1; PZQN01000057.1

Compact view

PZQN01000012.1 - Region 1 - pdu

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Location: 16,045 - 54,544 nt. (total: 38,500 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

PZQN01000006.1 - Region 1 - TPP_AA_metabolism

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Location: 32,425 - 69,652 nt. (total: 37,228 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

PZQN01000024.1 - Region 1 - Nitrate_reductase

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Location: 7,589 - 34,056 nt. (total: 26,468 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters