GCA_003052465.1 - 10 region(s)

Identified primary metabolite regions

QANM01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	histidine2glutamate_hutHGIU_operon	Other	1	22,608	Histidine to glutamate K. pneumoniae	GLU	60%
Region 11.2	Putrescine2spermidine	Aliphatic_amine	209,829	230,659	Arginine2putrescine R. gnavus	PUTR	40%
Region 11.3	Nitrate_reductase	E-MGC	236,254	262,641	Nitrate reductase E. coli	NIR	60%
Region 11.4	fatty_acids-unassigned	Putative	702,839	728,271	Acetate to butyrate C. sporogenes	BUT	33%

QANM01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	28,421	51,712
Region 22.2	fatty_acids-unassigned	Putative	360,658	383,893	Acetate to butyrate C. sporogenes	BUT	50%

QANM01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	fatty_acids-unassigned	Putative	12,801	102,572

QANM01000005.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	fatty_acids-unassigned	Putative	203,206	252,162

QANM01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	Fumarate2succinate	SCFA	256,000	274,449	Acetate to butyrate C. sporogenes	BUT	33%

QANM01000009.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 96.1	hydroxybenzoate2phenol	Aromatic	105,118	127,156	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

No primary metabolite regions were found in these records:: QANM01000010.1; QANM01000011.1; QANM01000012.1; QANM01000013.1; QANM01000014.1; QANM01000015.1; QANM01000016.1; QANM01000017.1; QANM01000018.1; QANM01000019.1; QANM01000020.1; QANM01000021.1; QANM01000022.1; QANM01000023.1; QANM01000024.1; QANM01000025.1; QANM01000026.1; QANM01000027.1; QANM01000028.1; QANM01000029.1; QANM01000030.1; QANM01000031.1; QANM01000032.1; QANM01000033.1; QANM01000034.1; QANM01000035.1; QANM01000036.1; QANM01000037.1; QANM01000038.1; QANM01000039.1; QANM01000040.1; QANM01000041.1; QANM01000042.1; QANM01000043.1; QANM01000044.1; QANM01000045.1; QANM01000046.1; QANM01000047.1; QANM01000048.1; QANM01000049.1; QANM01000004.1; QANM01000050.1; QANM01000051.1; QANM01000052.1; QANM01000053.1; QANM01000054.1; QANM01000055.1; QANM01000056.1; QANM01000057.1; QANM01000058.1; QANM01000059.1; QANM01000060.1; QANM01000061.1; QANM01000062.1; QANM01000063.1; QANM01000064.1; QANM01000065.1; QANM01000066.1; QANM01000067.1; QANM01000068.1; QANM01000069.1; QANM01000070.1; QANM01000071.1; QANM01000072.1; QANM01000073.1; QANM01000074.1; QANM01000075.1; QANM01000076.1; QANM01000077.1; QANM01000078.1; QANM01000079.1; QANM01000007.1; QANM01000080.1; QANM01000081.1; QANM01000082.1; QANM01000083.1; QANM01000084.1; QANM01000085.1; QANM01000086.1; QANM01000087.1; QANM01000088.1; QANM01000089.1; QANM01000008.1; QANM01000090.1; QANM01000091.1; QANM01000092.1; QANM01000093.1; QANM01000094.1; QANM01000095.1; QANM01000096.1

Compact view

QANM01000001.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 22,608 nt. (total: 22,608 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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QANM01000001.1 - Region 2 - Putrescine2spermidine

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Location: 209,829 - 230,659 nt. (total: 20,831 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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QANM01000001.1 - Region 3 - Nitrate_reductase

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Location: 236,254 - 262,641 nt. (total: 26,388 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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QANM01000001.1 - Region 4 - fatty_acids-unassigned

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Location: 702,839 - 728,271 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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resistance genes

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QANM01000002.1 - Region 1 - TPP_AA_metabolism

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Location: 28,421 - 51,712 nt. (total: 23,292 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

QANM01000002.1 - Region 2 - fatty_acids-unassigned

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Location: 360,658 - 383,893 nt. (total: 23,236 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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QANM01000003.1 - Region 1 - fatty_acids-unassigned

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Location: 12,801 - 102,572 nt. (total: 89,772 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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No matches found.

QANM01000005.1 - Region 1 - fatty_acids-unassigned

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Location: 203,206 - 252,162 nt. (total: 48,957 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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No matches found.

QANM01000006.1 - Region 1 - Fumarate2succinate

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Location: 256,000 - 274,449 nt. (total: 18,450 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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QANM01000009.1 - Region 1 - hydroxybenzoate2phenol

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Location: 105,118 - 127,156 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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core biosynthetic genes

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resistance genes

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KnownClusterBlast

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