GCA_003094715.1 - 3 region(s)

Identified primary metabolite regions

QDIX01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Fumarate2succinate	SCFA	1	20,688

QDIX01000011.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Others_HGD_unassigned	Putative	28,692	51,762

QDIX01000021.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Pyruvate2acetate-formate	SCFA	1,183	24,630	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 2.1	Fumarate2succinate	SCFA	1	20,688
Region 11.1	Others_HGD_unassigned	Putative	28,692	51,762
Region 21.1	Pyruvate2acetate-formate	SCFA	1,183	24,630	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: QDIX01000001.1; QDIX01000003.1; QDIX01000004.1; QDIX01000005.1; QDIX01000006.1; QDIX01000007.1; QDIX01000008.1; QDIX01000009.1; QDIX01000010.1; QDIX01000012.1; QDIX01000013.1; QDIX01000014.1; QDIX01000015.1; QDIX01000016.1; QDIX01000017.1; QDIX01000018.1; QDIX01000019.1; QDIX01000020.1; QDIX01000022.1; QDIX01000023.1; QDIX01000024.1; QDIX01000025.1; QDIX01000026.1; QDIX01000027.1; QDIX01000028.1; QDIX01000029.1; QDIX01000030.1; QDIX01000031.1; QDIX01000032.1; QDIX01000033.1; QDIX01000034.1; QDIX01000035.1; QDIX01000036.1; QDIX01000037.1; QDIX01000038.1; QDIX01000039.1; QDIX01000040.1; QDIX01000041.1; QDIX01000042.1; QDIX01000043.1; QDIX01000044.1; QDIX01000045.1; QDIX01000046.1; QDIX01000047.1; QDIX01000048.1; QDIX01000049.1; QDIX01000050.1; QDIX01000051.1; QDIX01000052.1; QDIX01000054.1; QDIX01000055.1; QDIX01000056.1; QDIX01000057.1; QDIX01000058.1; QDIX01000059.1; QDIX01000060.1; QDIX01000061.1; QDIX01000062.1; QDIX01000063.1; QDIX01000064.1; QDIX01000065.1; QDIX01000066.1; QDIX01000067.1; QDIX01000070.1; QDIX01000071.1; QDIX01000072.1; QDIX01000073.1; QDIX01000074.1; QDIX01000075.1; QDIX01000076.1; QDIX01000077.1; QDIX01000078.1; QDIX01000079.1; QDIX01000081.1; QDIX01000087.1; QDIX01000089.1; QDIX01000091.1; QDIX01000094.1; QDIX01000096.1; QDIX01000097.1

Compact view

QDIX01000002.1 - Region 1 - Fumarate2succinate

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Location: 1 - 20,688 nt. (total: 20,688 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

QDIX01000011.1 - Region 1 - Others_HGD_unassigned

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Location: 28,692 - 51,762 nt. (total: 23,071 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

QDIX01000021.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1,183 - 24,630 nt. (total: 23,448 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters