GCA_003094735.1 - 2 region(s)

Identified primary metabolite regions

QDII01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate,Fumarate2succinate	SCFA	1,727	47,150	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

QDII01000049.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	Others_HGD_unassigned	Putative	1	19,947

No primary metabolite regions were found in these records:: QDII01000001.1; QDII01000002.1; QDII01000004.1; QDII01000005.1; QDII01000006.1; QDII01000007.1; QDII01000008.1; QDII01000009.1; QDII01000010.1; QDII01000011.1; QDII01000012.1; QDII01000013.1; QDII01000014.1; QDII01000015.1; QDII01000016.1; QDII01000017.1; QDII01000018.1; QDII01000019.1; QDII01000020.1; QDII01000021.1; QDII01000023.1; QDII01000024.1; QDII01000025.1; QDII01000026.1; QDII01000027.1; QDII01000028.1; QDII01000029.1; QDII01000030.1; QDII01000031.1; QDII01000032.1; QDII01000033.1; QDII01000034.1; QDII01000035.1; QDII01000036.1; QDII01000037.1; QDII01000038.1; QDII01000039.1; QDII01000040.1; QDII01000041.1; QDII01000042.1; QDII01000043.1; QDII01000044.1; QDII01000045.1; QDII01000046.1; QDII01000047.1; QDII01000048.1; QDII01000050.1; QDII01000053.1; QDII01000054.1; QDII01000055.1; QDII01000056.1; QDII01000057.1; QDII01000058.1; QDII01000059.1; QDII01000060.1; QDII01000061.1; QDII01000063.1; QDII01000064.1; QDII01000065.1; QDII01000066.1; QDII01000068.1; QDII01000070.1; QDII01000073.1; QDII01000074.1; QDII01000078.1; QDII01000083.1; QDII01000087.1; QDII01000089.1; QDII01000091.1

Compact view

QDII01000003.1 - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

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Location: 1,727 - 47,150 nt. (total: 45,424 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QDII01000049.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 1 - 19,947 nt. (total: 19,947 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

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