GCA_003095035.1 - 2 region(s)

Identified primary metabolite regions

QDIM01000015.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Fumarate2succinate,Pyruvate2acetate-formate	SCFA	37,791	83,214	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

QDIM01000059.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 58.1	Others_HGD_unassigned	Putative	1	19,912

No primary metabolite regions were found in these records:: QDIM01000001.1; QDIM01000002.1; QDIM01000003.1; QDIM01000004.1; QDIM01000005.1; QDIM01000006.1; QDIM01000007.1; QDIM01000008.1; QDIM01000009.1; QDIM01000010.1; QDIM01000011.1; QDIM01000012.1; QDIM01000013.1; QDIM01000014.1; QDIM01000016.1; QDIM01000017.1; QDIM01000018.1; QDIM01000019.1; QDIM01000020.1; QDIM01000021.1; QDIM01000022.1; QDIM01000023.1; QDIM01000024.1; QDIM01000025.1; QDIM01000026.1; QDIM01000027.1; QDIM01000028.1; QDIM01000029.1; QDIM01000030.1; QDIM01000031.1; QDIM01000032.1; QDIM01000033.1; QDIM01000034.1; QDIM01000035.1; QDIM01000036.1; QDIM01000037.1; QDIM01000038.1; QDIM01000039.1; QDIM01000040.1; QDIM01000041.1; QDIM01000042.1; QDIM01000043.1; QDIM01000044.1; QDIM01000045.1; QDIM01000047.1; QDIM01000048.1; QDIM01000049.1; QDIM01000050.1; QDIM01000051.1; QDIM01000052.1; QDIM01000053.1; QDIM01000054.1; QDIM01000055.1; QDIM01000056.1; QDIM01000057.1; QDIM01000058.1; QDIM01000061.1; QDIM01000062.1; QDIM01000063.1; QDIM01000064.1; QDIM01000065.1; QDIM01000066.1; QDIM01000067.1; QDIM01000068.1; QDIM01000069.1; QDIM01000070.1; QDIM01000071.1; QDIM01000072.1; QDIM01000073.1; QDIM01000074.1; QDIM01000075.1; QDIM01000076.1; QDIM01000077.1; QDIM01000078.1; QDIM01000079.1; QDIM01000080.1; QDIM01000081.1; QDIM01000082.1; QDIM01000083.1; QDIM01000084.1; QDIM01000085.1; QDIM01000086.1; QDIM01000087.1; QDIM01000088.1; QDIM01000089.1; QDIM01000090.1; QDIM01000091.1; QDIM01000092.1; QDIM01000093.1; QDIM01000094.1; QDIM01000095.1; QDIM01000096.1; QDIM01000097.1; QDIM01000098.1; QDIM01000100.1; QDIM01000101.1; QDIM01000102.1; QDIM01000103.1; QDIM01000104.1; QDIM01000106.1; QDIM01000107.1; QDIM01000108.1; QDIM01000109.1; QDIM01000110.1; QDIM01000111.1; QDIM01000112.1; QDIM01000115.1; QDIM01000116.1; QDIM01000119.1; QDIM01000122.1; QDIM01000123.1; QDIM01000129.1; QDIM01000130.1; QDIM01000131.1; QDIM01000132.1; QDIM01000137.1; QDIM01000139.1; QDIM01000140.1; QDIM01000141.1; QDIM01000142.1; QDIM01000143.1; QDIM01000144.1

Compact view

QDIM01000015.1 - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

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Location: 37,791 - 83,214 nt. (total: 45,424 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QDIM01000059.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 1 - 19,912 nt. (total: 19,912 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.