GCA_003370175.1 - 3 region(s)

Identified primary metabolite regions

NJOE01000046.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Pyruvate2acetate-formate	SCFA	1	19,831	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NJOE01000057.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	Fumarate2succinate	SCFA	1	14,664

NJOE01000014.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	Others_HGD_unassigned	Putative	21,136	42,133

No primary metabolite regions were found in these records:: NJOE01000103.1; NJOE01000100.1; NJOE01000099.1; NJOE01000096.1; NJOE01000095.1; NJOE01000091.1; NJOE01000090.1; NJOE01000089.1; NJOE01000087.1; NJOE01000084.1; NJOE01000080.1; NJOE01000079.1; NJOE01000077.1; NJOE01000073.1; NJOE01000072.1; NJOE01000071.1; NJOE01000070.1; NJOE01000069.1; NJOE01000068.1; NJOE01000065.1; NJOE01000063.1; NJOE01000060.1; NJOE01000054.1; NJOE01000053.1; NJOE01000047.1; NJOE01000044.1; NJOE01000043.1; NJOE01000042.1; NJOE01000036.1; NJOE01000029.1; NJOE01000025.1; NJOE01000021.1; NJOE01000020.1; NJOE01000019.1; NJOE01000006.1; NJOE01000026.1; NJOE01000074.1; NJOE01000005.1; NJOE01000045.1; NJOE01000101.1; NJOE01000048.1; NJOE01000022.1; NJOE01000032.1; NJOE01000011.1; NJOE01000052.1; NJOE01000061.1; NJOE01000078.1; NJOE01000027.1; NJOE01000023.1; NJOE01000083.1; NJOE01000064.1; NJOE01000003.1; NJOE01000037.1; NJOE01000038.1; NJOE01000056.1; NJOE01000081.1; NJOE01000055.1; NJOE01000102.1; NJOE01000098.1; NJOE01000035.1; NJOE01000039.1; NJOE01000050.1; NJOE01000004.1; NJOE01000075.1; NJOE01000016.1; NJOE01000093.1; NJOE01000002.1; NJOE01000088.1; NJOE01000034.1; NJOE01000097.1; NJOE01000051.1; NJOE01000007.1; NJOE01000062.1; NJOE01000094.1; NJOE01000082.1; NJOE01000092.1; NJOE01000066.1; NJOE01000030.1; NJOE01000067.1; NJOE01000076.1; NJOE01000033.1; NJOE01000008.1; NJOE01000024.1; NJOE01000018.1; NJOE01000049.1; NJOE01000040.1; NJOE01000031.1; NJOE01000058.1; NJOE01000010.1; NJOE01000059.1; NJOE01000015.1; NJOE01000012.1; NJOE01000028.1; NJOE01000041.1; NJOE01000017.1; NJOE01000013.1; NJOE01000085.1; NJOE01000001.1; NJOE01000009.1; NJOE01000086.1

Compact view

NJOE01000046.1 - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 19,831 nt. (total: 19,831 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NJOE01000057.1 - Region 1 - Fumarate2succinate

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Location: 1 - 14,664 nt. (total: 14,664 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

NJOE01000014.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 21,136 - 42,133 nt. (total: 20,998 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.