GCA_003459195.1 - 8 region(s)

Identified primary metabolite regions

QRUW01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	TPP_AA_metabolism	Putative	214,378	250,994	Acetyl-CoA pathway C. beijerinckii	Acetate	13%

QRUW01000010.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	fatty_acids-unassigned	Putative	8,590	34,463	Acetate to butyrate C. sporogenes	BUT	33%

QRUW01000015.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	TPP_AA_metabolism	Putative	23,627	54,879	Aromatic amino acid reductive branch C. sporogenes	AAA	16%

QRUW01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Fumarate2succinate	SCFA	101,024	123,615	Caffeate respiration A. woodii	CAF	40%

QRUW01000024.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Pyruvate2acetate-formate	SCFA	1	17,978	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

QRUW01000033.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	fatty_acids-unassigned	Putative	1	17,033	Acetate to butyrate C. sporogenes	BUT	33%

QRUW01000004.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Oxidative_glycerol	Other	18,599	51,311
Region 34.2	Putrescine2spermidine	Aliphatic_amine	111,292	125,314	Arginine2putrescine R. gnavus	PUTR	40%

No primary metabolite regions were found in these records:: QRUW01000011.1; QRUW01000012.1; QRUW01000013.1; QRUW01000014.1; QRUW01000016.1; QRUW01000017.1; QRUW01000018.1; QRUW01000019.1; QRUW01000020.1; QRUW01000021.1; QRUW01000022.1; QRUW01000023.1; QRUW01000025.1; QRUW01000026.1; QRUW01000027.1; QRUW01000028.1; QRUW01000029.1; QRUW01000003.1; QRUW01000030.1; QRUW01000031.1; QRUW01000032.1; QRUW01000034.1; QRUW01000035.1; QRUW01000036.1; QRUW01000037.1; QRUW01000038.1; QRUW01000039.1; QRUW01000040.1; QRUW01000041.1; QRUW01000042.1; QRUW01000043.1; QRUW01000044.1; QRUW01000045.1; QRUW01000046.1; QRUW01000047.1; QRUW01000048.1; QRUW01000049.1; QRUW01000005.1; QRUW01000050.1; QRUW01000051.1; QRUW01000052.1; QRUW01000053.1; QRUW01000054.1; QRUW01000055.1; QRUW01000056.1; QRUW01000057.1; QRUW01000058.1; QRUW01000059.1; QRUW01000006.1; QRUW01000060.1; QRUW01000061.1; QRUW01000062.1; QRUW01000063.1; QRUW01000064.1; QRUW01000065.1; QRUW01000066.1; QRUW01000067.1; QRUW01000068.1; QRUW01000069.1; QRUW01000007.1; QRUW01000070.1; QRUW01000071.1; QRUW01000072.1; QRUW01000073.1; QRUW01000074.1; QRUW01000075.1; QRUW01000076.1; QRUW01000077.1; QRUW01000078.1; QRUW01000079.1; QRUW01000008.1; QRUW01000080.1; QRUW01000081.1; QRUW01000082.1; QRUW01000083.1; QRUW01000084.1; QRUW01000009.1

Compact view

QRUW01000001.1 - Region 1 - TPP_AA_metabolism

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Location: 214,378 - 250,994 nt. (total: 36,617 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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QRUW01000010.1 - Region 1 - fatty_acids-unassigned

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Location: 8,590 - 34,463 nt. (total: 25,874 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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QRUW01000015.1 - Region 1 - TPP_AA_metabolism

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Location: 23,627 - 54,879 nt. (total: 31,253 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QRUW01000002.1 - Region 1 - Fumarate2succinate

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Location: 101,024 - 123,615 nt. (total: 22,592 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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QRUW01000024.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 17,978 nt. (total: 17,978 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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Gene details

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KnownClusterBlast

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QRUW01000033.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 17,033 nt. (total: 17,033 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

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additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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QRUW01000004.1 - Region 1 - Oxidative_glycerol

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Location: 18,599 - 51,311 nt. (total: 32,713 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

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resistance genes

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No matches found.

QRUW01000004.1 - Region 2 - Putrescine2spermidine

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Location: 111,292 - 125,314 nt. (total: 14,023 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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