GCA_003545945.1 - 2 region(s)

Identified primary metabolite regions

QXET01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Pyruvate2acetate-formate	SCFA	1	15,442	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

QXET01000044.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	TPP_AA_metabolism	Putative	1	19,257

No primary metabolite regions were found in these records:: QXET01000100.1; QXET01000101.1; QXET01000102.1; QXET01000103.1; QXET01000104.1; QXET01000105.1; QXET01000106.1; QXET01000107.1; QXET01000108.1; QXET01000109.1; QXET01000010.1; QXET01000110.1; QXET01000111.1; QXET01000112.1; QXET01000113.1; QXET01000114.1; QXET01000115.1; QXET01000116.1; QXET01000117.1; QXET01000118.1; QXET01000119.1; QXET01000011.1; QXET01000120.1; QXET01000121.1; QXET01000122.1; QXET01000123.1; QXET01000124.1; QXET01000125.1; QXET01000126.1; QXET01000127.1; QXET01000128.1; QXET01000129.1; QXET01000012.1; QXET01000130.1; QXET01000131.1; QXET01000132.1; QXET01000133.1; QXET01000013.1; QXET01000014.1; QXET01000015.1; QXET01000016.1; QXET01000017.1; QXET01000018.1; QXET01000019.1; QXET01000020.1; QXET01000021.1; QXET01000022.1; QXET01000023.1; QXET01000024.1; QXET01000025.1; QXET01000026.1; QXET01000027.1; QXET01000028.1; QXET01000029.1; QXET01000002.1; QXET01000030.1; QXET01000031.1; QXET01000032.1; QXET01000033.1; QXET01000034.1; QXET01000035.1; QXET01000036.1; QXET01000037.1; QXET01000038.1; QXET01000039.1; QXET01000003.1; QXET01000040.1; QXET01000041.1; QXET01000042.1; QXET01000043.1; QXET01000045.1; QXET01000046.1; QXET01000047.1; QXET01000048.1; QXET01000049.1; QXET01000004.1; QXET01000050.1; QXET01000051.1; QXET01000052.1; QXET01000053.1; QXET01000054.1; QXET01000055.1; QXET01000056.1; QXET01000057.1; QXET01000058.1; QXET01000059.1; QXET01000005.1; QXET01000060.1; QXET01000061.1; QXET01000062.1; QXET01000063.1; QXET01000064.1; QXET01000065.1; QXET01000066.1; QXET01000067.1; QXET01000068.1; QXET01000069.1; QXET01000006.1; QXET01000070.1; QXET01000071.1; QXET01000072.1; QXET01000073.1; QXET01000074.1; QXET01000075.1; QXET01000076.1; QXET01000077.1; QXET01000078.1; QXET01000079.1; QXET01000007.1; QXET01000080.1; QXET01000081.1; QXET01000082.1; QXET01000083.1; QXET01000084.1; QXET01000085.1; QXET01000086.1; QXET01000087.1; QXET01000088.1; QXET01000089.1; QXET01000008.1; QXET01000090.1; QXET01000091.1; QXET01000092.1; QXET01000093.1; QXET01000094.1; QXET01000095.1; QXET01000096.1; QXET01000097.1; QXET01000098.1; QXET01000099.1; QXET01000009.1

Compact view

QXET01000001.1 - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 15,442 nt. (total: 15,442 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QXET01000044.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 1 - 19,257 nt. (total: 19,257 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.