GCA_004359975.2 - 9 region(s)

Identified primary metabolite regions

SMSP02000058.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	fatty_acids-unassigned	Putative	1	23,530	Acetate to butyrate C. sporogenes	BUT	33%

SMSP02000070.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	TPP_AA_metabolism	Putative	1	23,716

SMSP02000077.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	Pyruvate2acetate-formate	SCFA	46,759	65,560	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

SMSP02000067.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Fumarate2succinate	SCFA	604	23,150	Caffeate respiration A. woodii	CAF	40%

SMSP02000068.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	fatty_acids-unassigned	Putative	14,105	29,646	Acetate to butyrate C. sporogenes	BUT	33%

SMSP02000062.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 61.1	Oxidative_glycerol	Other	7,808	40,522

SMSP02000048.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 89.1	Putrescine2spermidine	Aliphatic_amine	1	21,318	Arginine2putrescine R. gnavus	PUTR	40%

SMSP02000106.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 90.1	Nitrate_reductase	E-MGC	1	17,848	Nitrate reductase E. coli	NIR	60%

SMSP02000111.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 94.1	TPP_AA_metabolism	Putative	2,254	38,874	Acetyl-CoA pathway C. beijerinckii	Acetate	13%

No primary metabolite regions were found in these records:: SMSP02000018.1; SMSP02000030.1; SMSP02000039.1; SMSP02000057.1; SMSP02000066.1; SMSP02000003.1; SMSP02000032.1; SMSP02000038.1; SMSP02000045.1; SMSP02000047.1; SMSP02000052.1; SMSP02000008.1; SMSP02000019.1; SMSP02000046.1; SMSP02000061.1; SMSP02000063.1; SMSP02000065.1; SMSP02000035.1; SMSP02000043.1; SMSP02000053.1; SMSP02000069.1; SMSP02000078.1; SMSP02000028.1; SMSP02000055.1; SMSP02000084.1; SMSP02000087.1; SMSP02000094.1; SMSP02000020.1; SMSP02000029.1; SMSP02000071.1; SMSP02000076.1; SMSP02000005.1; SMSP02000022.1; SMSP02000006.1; SMSP02000041.1; SMSP02000009.1; SMSP02000073.1; SMSP02000088.1; SMSP02000001.1; SMSP02000021.1; SMSP02000033.1; SMSP02000080.1; SMSP02000089.1; SMSP02000007.1; SMSP02000025.1; SMSP02000034.1; SMSP02000016.1; SMSP02000059.1; SMSP02000011.1; SMSP02000082.1; SMSP02000037.1; SMSP02000083.1; SMSP02000002.1; SMSP02000042.1; SMSP02000051.1; SMSP02000064.1; SMSP02000074.1; SMSP02000079.1; SMSP02000097.1; SMSP02000031.1; SMSP02000036.1; SMSP02000044.1; SMSP02000072.1; SMSP02000081.1; SMSP02000085.1; SMSP02000086.1; SMSP02000100.1; SMSP02000091.1; SMSP02000095.1; SMSP02000096.1; SMSP02000107.1; SMSP02000010.1; SMSP02000027.1; SMSP02000075.1; SMSP02000090.1; SMSP02000014.1; SMSP02000092.1; SMSP02000099.1; SMSP02000102.1; SMSP02000103.1; SMSP02000108.1; SMSP02000109.1; SMSP02000112.1; SMSP02000098.1; SMSP02000101.1; SMSP02000113.1; SMSP02000114.1; SMSP02000116.1; SMSP02000049.1; SMSP02000093.1; SMSP02000104.1; SMSP02000105.1; SMSP02000110.1; SMSP02000115.1; SMSP02000013.1; SMSP02000023.1; SMSP02000017.1; SMSP02000012.1; SMSP02000026.1; SMSP02000040.1; SMSP02000056.1; SMSP02000060.1; SMSP02000004.1; SMSP02000015.1; SMSP02000024.1; SMSP02000050.1; SMSP02000054.1

Compact view

SMSP02000058.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 23,530 nt. (total: 23,530 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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SMSP02000070.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 23,716 nt. (total: 23,716 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

SMSP02000077.1 - Region 1 - Pyruvate2acetate-formate

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Location: 46,759 - 65,560 nt. (total: 18,802 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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SMSP02000067.1 - Region 1 - Fumarate2succinate

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Location: 604 - 23,150 nt. (total: 22,547 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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SMSP02000068.1 - Region 1 - fatty_acids-unassigned

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Location: 14,105 - 29,646 nt. (total: 15,542 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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SMSP02000062.1 - Region 1 - Oxidative_glycerol

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Location: 7,808 - 40,522 nt. (total: 32,715 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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No matches found.

SMSP02000048.1 - Region 1 - Putrescine2spermidine

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Location: 1 - 21,318 nt. (total: 21,318 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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SMSP02000106.1 - Region 1 - Nitrate_reductase

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Location: 1 - 17,848 nt. (total: 17,848 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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SMSP02000111.1 - Region 1 - TPP_AA_metabolism

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Location: 2,254 - 38,874 nt. (total: 36,621 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters