GCA_004803425.1 - 3 region(s)

Identified primary metabolite regions

SSWL01000020.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Pyruvate2acetate-formate	SCFA	12,831	35,011	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

SSWL01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Fumarate2succinate	SCFA	1	16,526

SSWL01000009.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	Others_HGD_unassigned	Putative	42,631	67,727

No primary metabolite regions were found in these records:: SSWL01000001.1; SSWL01000010.1; SSWL01000011.1; SSWL01000012.1; SSWL01000013.1; SSWL01000014.1; SSWL01000015.1; SSWL01000016.1; SSWL01000017.1; SSWL01000018.1; SSWL01000019.1; SSWL01000002.1; SSWL01000021.1; SSWL01000022.1; SSWL01000023.1; SSWL01000024.1; SSWL01000025.1; SSWL01000026.1; SSWL01000027.1; SSWL01000028.1; SSWL01000029.1; SSWL01000030.1; SSWL01000031.1; SSWL01000032.1; SSWL01000033.1; SSWL01000034.1; SSWL01000035.1; SSWL01000036.1; SSWL01000037.1; SSWL01000038.1; SSWL01000039.1; SSWL01000004.1; SSWL01000040.1; SSWL01000041.1; SSWL01000042.1; SSWL01000043.1; SSWL01000044.1; SSWL01000045.1; SSWL01000046.1; SSWL01000047.1; SSWL01000048.1; SSWL01000049.1; SSWL01000005.1; SSWL01000006.1; SSWL01000007.1; SSWL01000008.1

Compact view

SSWL01000020.1 - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 12,831 - 35,011 nt. (total: 22,181 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

SSWL01000003.1 - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 1 - 16,526 nt. (total: 16,526 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

SSWL01000009.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 42,631 - 67,727 nt. (total: 25,097 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.