# emapper version: emapper-2.0.1b-2-g816e190 emapper DB: 2.0
# command: ./emapper.py  -i Lactobacillus_delbrueckii_subsp._bulgaricus/1.contigAnn/FFN/A00000025.ffn --translate --temp_dir Lactobacillus_delbrueckii_subsp._bulgaricus/4.eggNOG_mapper --output_dir Lactobacillus_delbrueckii_subsp._bulgaricus/4.eggNOG_mapper --output A00000025 --cpu 36 --keep_mapping_files -m diamond
# time: Mon Jun 13 11:14:46 2022
#query_name	seed_eggNOG_ortholog	seed_ortholog_evalue	seed_ortholog_score	best_tax_level	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	taxonomic scope	eggNOG OGs	best eggNOG OG	COG Functional cat.	eggNOG free text desc.
PAPOILPD_00002	353496.LBU_1249	0.0	1380.5	Lactobacillaceae	traI		5.99.1.2	ko:K03169					ko00000,ko01000,ko03032				Bacteria	1TPJD@1239,3F4W6@33958,4HAZV@91061,COG0550@1,COG0550@2	NA|NA|NA	L	This gene contains a nucleotide ambiguity which may be the result of a sequencing error
PAPOILPD_00003	390333.Ldb1451	6.4e-289	999.6	Lactobacillaceae													Bacteria	1W1FZ@1239,2FIUN@1,34AK2@2,3F4QV@33958,4HYXZ@91061	NA|NA|NA	S	SH3-like domain
PAPOILPD_00004	390333.Ldb1447	2.2e-27	127.5	Lactobacillaceae	XK27_05520												Bacteria	1U58U@1239,3F91P@33958,4IF01@91061,COG3860@1,COG3860@2	NA|NA|NA	S	Uncharacterized protein conserved in bacteria (DUF2087)
PAPOILPD_00005	353496.LBU_1243	2.2e-82	311.6	Lactobacillaceae	purE	GO:0003674,GO:0003824,GO:0004638,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034023,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	5.4.99.18	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07405	RC01947	ko00000,ko00001,ko00002,ko01000			iETEC_1333.ETEC_0575,iJN746.PP_5336,iPC815.YPO3076,iUTI89_1310.UTI89_C0551	Bacteria	1V1MV@1239,3F6P0@33958,4HFR7@91061,COG0041@1,COG0041@2	NA|NA|NA	F	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PAPOILPD_00006	353496.LBU_1242	2e-208	731.5	Lactobacillaceae	purK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	6.3.4.18	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07404	RC01927	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQCD@1239,3F3YV@33958,4H9M5@91061,COG0026@1,COG0026@2	NA|NA|NA	F	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PAPOILPD_00007	390333.Ldb1444	4.4e-252	876.7	Lactobacillaceae	purB	GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.3.2.2	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048,M00049	R01083,R04559	RC00379,RC00444,RC00445	ko00000,ko00001,ko00002,ko01000			iLJ478.TM1095	Bacteria	1TPMM@1239,3F48P@33958,4HACW@91061,COG0015@1,COG0015@2	NA|NA|NA	F	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PAPOILPD_00008	353496.LBU_1240	1.6e-134	485.3	Lactobacillaceae	purC	GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016874,GO:0016879,GO:0016881,GO:0044424,GO:0044444,GO:0044464	4.1.1.21,4.3.2.2,6.3.2.6	ko:K01587,ko:K01756,ko:K01923	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048,M00049	R01083,R04209,R04559,R04591	RC00064,RC00162,RC00379,RC00444,RC00445,RC00590	ko00000,ko00001,ko00002,ko01000			iAF1260.b2476,iB21_1397.B21_02330,iBWG_1329.BWG_2240,iE2348C_1286.E2348C_2713,iEC042_1314.EC042_2677,iEC55989_1330.EC55989_2759,iECABU_c1320.ECABU_c27880,iECBD_1354.ECBD_1213,iECB_1328.ECB_02368,iECDH10B_1368.ECDH10B_2642,iECDH1ME8569_1439.ECDH1ME8569_2402,iECDH1ME8569_1439.EcDH1_1193,iECD_1391.ECD_02368,iECED1_1282.ECED1_2911,iECH74115_1262.ECH74115_3698,iECIAI1_1343.ECIAI1_2527,iECNA114_1301.ECNA114_2561,iECO103_1326.ECO103_2988,iECO111_1330.ECO111_3199,iECO26_1355.ECO26_3522,iECOK1_1307.ECOK1_2784,iECP_1309.ECP_2490,iECS88_1305.ECS88_2658,iECSE_1348.ECSE_2760,iECSF_1327.ECSF_2329,iECSP_1301.ECSP_3415,iECUMN_1333.ECUMN_2789,iECW_1372.ECW_m2698,iECs_1301.ECs3338,iEKO11_1354.EKO11_1259,iETEC_1333.ETEC_2581,iEcDH1_1363.EcDH1_1193,iEcE24377_1341.EcE24377A_2757,iEcHS_1320.EcHS_A2607,iEcSMS35_1347.EcSMS35_2623,iEcolC_1368.EcolC_1200,iG2583_1286.G2583_2999,iJN746.PP_1240,iJO1366.b2476,iJR904.b2476,iLF82_1304.LF82_1775,iNRG857_1313.NRG857_12360,iSFV_1184.SFV_2521,iSF_1195.SF2519,iSFxv_1172.SFxv_2773,iS_1188.S2669,iSbBS512_1146.SbBS512_E2848,iUMNK88_1353.UMNK88_3071,iWFL_1372.ECW_m2698,iY75_1357.Y75_RS12925,iYL1228.KPN_02810,iZ_1308.Z3735	Bacteria	1TP11@1239,3F44Z@33958,4H9U8@91061,COG0152@1,COG0152@2	NA|NA|NA	F	Belongs to the SAICAR synthetase family
PAPOILPD_00009	353496.LBU_1239	2.8e-38	164.1	Lactobacillaceae	purS		6.3.2.6,6.3.5.3	ko:K01923,ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463,R04591	RC00010,RC00064,RC00162,RC01160	ko00000,ko00001,ko00002,ko01000			iYO844.BSU06460	Bacteria	1VEH1@1239,3F81F@33958,4HP0E@91061,COG1828@1,COG1828@2	NA|NA|NA	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAPOILPD_00010	353496.LBU_1238	5.2e-127	460.3	Lactobacillaceae	purQ	GO:0003674,GO:0003824,GO:0004642,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP1B@1239,3F48D@33958,4HAKZ@91061,COG0047@1,COG0047@2	NA|NA|NA	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAPOILPD_00011	353496.LBU_1237	0.0	1476.5	Lactobacillaceae	purL	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPAS@1239,3F4IQ@33958,4HB3N@91061,COG0046@1,COG0046@2	NA|NA|NA	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAPOILPD_00012	353496.LBU_1236	1.5e-280	971.5	Lactobacillaceae	purF	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	2.4.2.14	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048	R01072	RC00010,RC02724,RC02752	ko00000,ko00001,ko00002,ko01000,ko01002			iSB619.SA_RS05225	Bacteria	1TPH3@1239,3F3U7@33958,4HAXU@91061,COG0034@1,COG0034@2	NA|NA|NA	F	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PAPOILPD_00013	390333.Ldb1438	5.1e-198	696.8	Lactobacillaceae	purM	GO:0003674,GO:0003824,GO:0004641,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.3.1,6.3.4.13	ko:K01933,ko:K11788	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04144,R04208	RC00090,RC00166,RC01100	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1844,iECSF_1327.ECSF_2340	Bacteria	1TP9J@1239,3F4RT@33958,4HABW@91061,COG0150@1,COG0150@2	NA|NA|NA	F	Phosphoribosylformylglycinamidine cyclo-ligase
PAPOILPD_00014	353496.LBU_1234	7.1e-109	399.8	Lactobacillaceae	purN		2.1.2.2	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	M00048	R04325,R04326	RC00026,RC00197,RC01128	ko00000,ko00001,ko00002,ko01000				Bacteria	1V3RJ@1239,3F3UN@33958,4HGY5@91061,COG0299@1,COG0299@2	NA|NA|NA	F	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PAPOILPD_00015	353496.LBU_1233	1.8e-292	1011.1	Lactobacillaceae	purH	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	2.1.2.3,3.5.4.10	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	M00048	R01127,R04560	RC00026,RC00263,RC00456	ko00000,ko00001,ko00002,ko01000,ko04147			iJN678.purH	Bacteria	1TPQ5@1239,3F4FD@33958,4H9YY@91061,COG0138@1,COG0138@2	NA|NA|NA	F	Bifunctional purine biosynthesis protein PurH
PAPOILPD_00016	353496.LBU_1232	4.2e-239	833.6	Lactobacillaceae	purD		6.3.4.13	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04144	RC00090,RC00166	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS05245,iYO844.BSU06530	Bacteria	1UHN9@1239,3F4Z8@33958,4HA70@91061,COG0151@1,COG0151@2	NA|NA|NA	F	Belongs to the GARS family
PAPOILPD_00017	1293597.BN147_05835	1.6e-08	63.9	Lactobacillaceae	livF			ko:K01996	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	1TPW4@1239,3F3RP@33958,4HABJ@91061,COG0410@1,COG0410@2	NA|NA|NA	E	ABC transporter
PAPOILPD_00018	1293597.BN147_05835	6.8e-35	152.9	Lactobacillaceae	livF			ko:K01996	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	1TPW4@1239,3F3RP@33958,4HABJ@91061,COG0410@1,COG0410@2	NA|NA|NA	E	ABC transporter
PAPOILPD_00019	353496.LBU_1229	2.6e-89	334.7	Lactobacillaceae	metB	GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0016740,GO:0016765,GO:0016829,GO:0016846	2.5.1.48,4.4.1.8	ko:K01739,ko:K01760	ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017	R00782,R00999,R01286,R01288,R02408,R02508,R03217,R03260,R04941,R04944,R04945,R04946	RC00020,RC00056,RC00069,RC00382,RC00420,RC00488,RC00710,RC01245,RC02303,RC02848,RC02866	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPC7@1239,3F4CK@33958,4HAFQ@91061,COG0626@1,COG0626@2	NA|NA|NA	E	Cys/Met metabolism PLP-dependent enzyme
PAPOILPD_00020	353496.LBU_1228	3.9e-65	253.8	Lactobacillaceae	arsC		1.20.4.1	ko:K00537,ko:K16509					ko00000,ko01000				Bacteria	1VA5Q@1239,3F72U@33958,4HKQQ@91061,COG1393@1,COG1393@2	NA|NA|NA	P	Belongs to the ArsC family
PAPOILPD_00021	353496.LBU_1227	6.4e-48	196.4	Lactobacillaceae	rplU	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02888	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V9YH@1239,3F6WT@33958,4HIGK@91061,COG0261@1,COG0261@2	NA|NA|NA	J	This protein binds to 23S rRNA in the presence of protein L20
PAPOILPD_00022	353496.LBU_1226	1.6e-48	198.4	Lactobacillaceae	rpmA	GO:0000027,GO:0001558,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0040008,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048518,GO:0050789,GO:0050794,GO:0051128,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090069,GO:0090070,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904		ko:K02899	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6HW@1239,3F6WU@33958,4HIMN@91061,COG0211@1,COG0211@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL27 family
PAPOILPD_00023	390333.Ldb1429	2.1e-194	684.9	Lactobacillaceae	pepP		3.4.11.9,3.4.13.9	ko:K01262,ko:K01271					ko00000,ko01000,ko01002				Bacteria	1TQ44@1239,3F4DR@33958,4HAT7@91061,COG0006@1,COG0006@2	NA|NA|NA	E	Creatinase/Prolidase N-terminal domain
PAPOILPD_00024	353496.LBU_1224	4.5e-100	370.5	Lactobacillaceae	efp	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02356					ko00000,ko03012				Bacteria	1TR8P@1239,3F422@33958,4H9YX@91061,COG0231@1,COG0231@2	NA|NA|NA	J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PAPOILPD_00025	353496.LBU_1223	5.8e-71	273.5	Lactobacillaceae	yqhY			ko:K10947					ko00000,ko03000				Bacteria	1V4IC@1239,3F71X@33958,4HJ7T@91061,COG1302@1,COG1302@2	NA|NA|NA	S	Asp23 family, cell envelope-related function
PAPOILPD_00026	353496.LBU_1222	1.5e-65	255.4	Lactobacillaceae	nusB			ko:K03625					ko00000,ko03009,ko03021				Bacteria	1VA9B@1239,3F7KW@33958,4HKMU@91061,COG0781@1,COG0781@2	NA|NA|NA	K	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PAPOILPD_00027	353496.LBU_1221	4.3e-155	553.9	Lactobacillaceae	folD	GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP1P@1239,3F46A@33958,4H9Q6@91061,COG0190@1,COG0190@2	NA|NA|NA	F	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PAPOILPD_00028	353496.LBU_1220	7.3e-245	852.8	Lactobacillaceae	xseA		3.1.11.6	ko:K03601	ko03430,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	1TP4E@1239,3F4RE@33958,4HAN2@91061,COG1570@1,COG1570@2	NA|NA|NA	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PAPOILPD_00029	390333.Ldb1423	1.7e-32	144.8	Lactobacillaceae	xseB		3.1.11.6	ko:K03602	ko03430,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	1VK9I@1239,3F81K@33958,4HNRB@91061,COG1722@1,COG1722@2	NA|NA|NA	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PAPOILPD_00030	353496.LBU_1218	3.8e-159	567.4	Lactobacillaceae	ispA	GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0071704,GO:1901576	2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90	ko:K00795,ko:K02523,ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364,M00366	R01658,R02003,R02061,R09248	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006				Bacteria	1TPQY@1239,3F436@33958,4HA8E@91061,COG0142@1,COG0142@2	NA|NA|NA	H	Belongs to the FPP GGPP synthase family
PAPOILPD_00031	353496.LBU_1217	3.6e-151	540.8	Lactobacillaceae	rrmJ		2.1.1.226,2.1.1.227	ko:K06442					ko00000,ko01000,ko03009				Bacteria	1TPE4@1239,3F45T@33958,4HAPY@91061,COG1189@1,COG1189@2	NA|NA|NA	J	Ribosomal RNA large subunit methyltransferase J
PAPOILPD_00032	390333.Ldb1420	1e-301	1042.0	Lactobacillaceae	recN	GO:0000724,GO:0000725,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009295,GO:0009314,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0030312,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071944,GO:0090304,GO:1901360		ko:K03631,ko:K13582	ko04112,map04112				ko00000,ko00001,ko03400				Bacteria	1TP99@1239,3F43U@33958,4H9ZR@91061,COG0497@1,COG0497@2	NA|NA|NA	L	May be involved in recombinational repair of damaged DNA
PAPOILPD_00033	353496.LBU_1215	4.2e-43	180.6	Bacteria	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	COG4166@1,COG4166@2	NA|NA|NA	E	transmembrane transport
PAPOILPD_00034	1293597.BN147_06060	1.5e-45	189.1	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00035	353496.LBU_1212	1.7e-48	198.4	Lactobacillaceae													Bacteria	1U69D@1239,29P8C@1,30A6F@2,3F7CN@33958,4IG0I@91061	NA|NA|NA		
PAPOILPD_00036	353496.LBU_1211	4e-110	404.1	Lactobacillaceae	gmk	GO:0003674,GO:0003824,GO:0004385,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657	2.7.4.8,4.1.1.23	ko:K00942,ko:K01591	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00050,M00051	R00332,R00965,R02090	RC00002,RC00409	ko00000,ko00001,ko00002,ko01000			iAPECO1_1312.APECO1_2813,iIT341.HP0321,iPC815.YPO0040,iSBO_1134.SBO_3729,iSFV_1184.SFV_3881,iSFxv_1172.SFxv_4016,iUTI89_1310.UTI89_C4193,iYO844.BSU15680	Bacteria	1TP0M@1239,3F3X9@33958,4HAYW@91061,COG0194@1,COG0194@2	NA|NA|NA	F	Essential for recycling GMP and indirectly, cGMP
PAPOILPD_00037	353496.LBU_1210	4.2e-33	146.7	Lactobacillaceae	rpoZ	GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234	2.7.7.6	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	1VK74@1239,3F81N@33958,4HNHS@91061,COG1758@1,COG1758@2	NA|NA|NA	K	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
PAPOILPD_00038	390333.Ldb1413	0.0	1536.9	Lactobacillaceae	priA	GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576		ko:K04066	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1TNYB@1239,3F3N8@33958,4H9WW@91061,COG1198@1,COG1198@2	NA|NA|NA	L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PAPOILPD_00039	353496.LBU_1208	7.4e-172	609.8	Lactobacillaceae	fmt	GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.1.2.9	ko:K00604	ko00670,ko00970,map00670,map00970		R03940	RC00026,RC00165	ko00000,ko00001,ko01000			iSB619.SA_RS06010	Bacteria	1TQ32@1239,3F4N7@33958,4HART@91061,COG0223@1,COG0223@2	NA|NA|NA	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PAPOILPD_00040	390333.Ldb1411	9.4e-242	842.4	Lactobacillaceae	sun	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0030312,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.176	ko:K03500					ko00000,ko01000,ko03009				Bacteria	1TP3N@1239,3F45F@33958,4HBQ6@91061,COG0144@1,COG0144@2,COG0781@1,COG0781@2	NA|NA|NA	J	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PAPOILPD_00041	390333.Ldb1410	1.4e-136	492.3	Lactobacillaceae	stp		3.1.3.16	ko:K20074					ko00000,ko01000,ko01009				Bacteria	1V6K5@1239,3F4UI@33958,4HCDR@91061,COG0631@1,COG0631@2	NA|NA|NA	T	phosphatase
PAPOILPD_00042	390333.Ldb1409	0.0	1169.1	Lactobacillaceae													Bacteria	1TP3F@1239,3F4G6@33958,4H9KD@91061,COG0515@1,COG0515@2	NA|NA|NA	KLT	serine threonine protein kinase
PAPOILPD_00043	353496.LBU_1204	4.5e-163	580.5	Lactobacillaceae	rsgA		3.1.3.100	ko:K06949	ko00730,ko01100,map00730,map01100		R00615,R02135	RC00002,RC00017	ko00000,ko00001,ko01000,ko03009				Bacteria	1TPSQ@1239,3F3XH@33958,4HA9W@91061,COG1162@1,COG1162@2	NA|NA|NA	S	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
PAPOILPD_00044	353496.LBU_1203	1.5e-126	458.8	Lactobacillaceae	thiN		2.7.6.2	ko:K00949	ko00730,ko01100,map00730,map01100		R00619	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	1VA0W@1239,3F4N8@33958,4HHS1@91061,COG1564@1,COG1564@2	NA|NA|NA	H	thiamine pyrophosphokinase
PAPOILPD_00048	353496.LBU_1199	1.7e-114	419.1	Lactobacillaceae													Bacteria	1TSRV@1239,3F3JJ@33958,4HIAU@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter transmembrane region
PAPOILPD_00049	353496.LBU_1199	6.4e-117	426.8	Lactobacillaceae													Bacteria	1TSRV@1239,3F3JJ@33958,4HIAU@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter transmembrane region
PAPOILPD_00050	353496.LBU_1198	3.2e-26	123.6	Lactobacillaceae	rpmB	GO:0003674,GO:0003735,GO:0005198		ko:K02902	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEI2@1239,3F7ZN@33958,4HNIK@91061,COG0227@1,COG0227@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL28 family
PAPOILPD_00051	353496.LBU_1197	8.8e-57	226.1	Lactobacillaceae	asp												Bacteria	1V731@1239,3F72W@33958,4HIS4@91061,COG1302@1,COG1302@2	NA|NA|NA	S	Asp23 family, cell envelope-related function
PAPOILPD_00052	390333.Ldb1390	2.2e-272	944.5	Lactobacillaceae	yloV			ko:K07030					ko00000				Bacteria	1TQMX@1239,3F3X0@33958,4HBSE@91061,COG1461@1,COG1461@2	NA|NA|NA	S	DAK2 domain fusion protein YloV
PAPOILPD_00053	353496.LBU_1195	0.0	1314.3	Lactobacillaceae	recG	GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494	3.6.4.12	ko:K03655	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1TQ6I@1239,3F3JW@33958,4HAWN@91061,COG1200@1,COG1200@2	NA|NA|NA	L	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PAPOILPD_00054	353496.LBU_1194	4.2e-178	630.6	Lactobacillaceae	plsX	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.3.1.15	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1TPXS@1239,3F4N9@33958,4HA0R@91061,COG0416@1,COG0416@2	NA|NA|NA	I	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
PAPOILPD_00055	353496.LBU_1193	8.3e-35	152.5	Lactobacillaceae	acpP	GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509		ko:K02078					ko00000,ko00001				Bacteria	1VEE3@1239,3F7F4@33958,4HNQ0@91061,COG0236@1,COG0236@2	NA|NA|NA	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PAPOILPD_00056	353496.LBU_1192	3.2e-189	667.5	Lactobacillaceae	oppD	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K02031,ko:K02032,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TP6E@1239,3F41T@33958,4HA4E@91061,COG0444@1,COG0444@2	NA|NA|NA	P	Belongs to the ABC transporter superfamily
PAPOILPD_00057	353496.LBU_1191	2e-177	628.2	Lactobacillaceae	oppF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K02032,ko:K10823,ko:K12372,ko:K13892	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00324,M00348,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.11,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1V36J@1239,3F4GM@33958,4H9YB@91061,COG4608@1,COG4608@2	NA|NA|NA	P	Belongs to the ABC transporter superfamily
PAPOILPD_00058	390333.Ldb1384	1.6e-174	618.6	Lactobacillaceae	oppB			ko:K02033,ko:K02034,ko:K13894	ko02010,ko02024,map02010,map02024	M00239,M00349			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.21,3.A.1.5.24			Bacteria	1TP1S@1239,3FCCU@33958,4HATR@91061,COG0601@1,COG0601@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00059	353496.LBU_1189	4.6e-155	553.9	Lactobacillaceae	oppC			ko:K02034,ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TP4R@1239,3FCB7@33958,4HDIR@91061,COG1173@1,COG1173@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
PAPOILPD_00060	390333.Ldb1382	0.0	1100.9	Lactobacillaceae	oppA1			ko:K02035	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	1TQ0N@1239,3F3KW@33958,4HARF@91061,COG0747@1,COG0747@2	NA|NA|NA	E	ABC transporter substrate-binding protein
PAPOILPD_00061	353496.LBU_1187	0.0	1157.1	Lactobacillaceae	oppA			ko:K02035	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	1TQ0N@1239,3F3KW@33958,4HARF@91061,COG0747@1,COG0747@2	NA|NA|NA	E	ABC transporter substrate-binding protein
PAPOILPD_00062	353496.LBU_1186	4.5e-126	457.2	Lactobacillaceae	rnc	GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363	3.1.26.3	ko:K03685	ko03008,ko05205,map03008,map05205				ko00000,ko00001,ko01000,ko03009,ko03019,ko03036				Bacteria	1TPGC@1239,3F564@33958,4HAWU@91061,COG0571@1,COG0571@2	NA|NA|NA	J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
PAPOILPD_00063	353496.LBU_1185	0.0	1611.3	Lactobacillaceae	smc			ko:K03529					ko00000,ko03036				Bacteria	1TPJV@1239,3F478@33958,4HB89@91061,COG1196@1,COG1196@2	NA|NA|NA	D	Required for chromosome condensation and partitioning
PAPOILPD_00064	353496.LBU_1184	8.5e-155	553.5	Lactobacillaceae	ftsY			ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2,3.A.5.7			Bacteria	1TPRI@1239,3F3YC@33958,4HA6A@91061,COG0552@1,COG0552@2	NA|NA|NA	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
PAPOILPD_00065	353496.LBU_1182	5.9e-25	119.4	Lactobacillaceae	pipD			ko:K08659					ko00000,ko01000,ko01002				Bacteria	1TQ0F@1239,3F3M4@33958,4HC3G@91061,COG4690@1,COG4690@2	NA|NA|NA	E	Dipeptidase
PAPOILPD_00066	353496.LBU_1181	1.1e-51	209.1	Lactobacillaceae	ylxM	GO:0003674,GO:0008150,GO:0030234,GO:0030695,GO:0050790,GO:0060589,GO:0065007,GO:0065009,GO:0098772		ko:K09787					ko00000				Bacteria	1VEGP@1239,3F7FG@33958,4HKK6@91061,COG2739@1,COG2739@2	NA|NA|NA	S	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
PAPOILPD_00067	353496.LBU_1180	1.4e-243	848.6	Lactobacillaceae	ffh	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944	3.6.5.4	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko01000,ko02044	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9			Bacteria	1TP06@1239,3F40R@33958,4H9T4@91061,COG0541@1,COG0541@2	NA|NA|NA	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PAPOILPD_00068	1293597.BN147_06185	2.9e-44	184.1	Lactobacillaceae	rpsP	GO:0000028,GO:0000217,GO:0000400,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016787,GO:0016788,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02959	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011,ko03029				Bacteria	1VA0X@1239,3F6VV@33958,4HKNN@91061,COG0228@1,COG0228@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bS16 family
PAPOILPD_00069	353496.LBU_1178	6.9e-92	343.2	Lactobacillaceae	rimM	GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360		ko:K02860					ko00000,ko03009				Bacteria	1V6HD@1239,3F74P@33958,4HH3H@91061,COG0806@1,COG0806@2	NA|NA|NA	J	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PAPOILPD_00070	353496.LBU_1177	5.1e-136	490.3	Lactobacillaceae	trmD	GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.228,4.6.1.12	ko:K00554,ko:K01770	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R00597,R05637	RC00002,RC00003,RC00334,RC01440	ko00000,ko00001,ko00002,ko01000,ko03016				Bacteria	1TPBV@1239,3F3NP@33958,4HBFV@91061,COG0336@1,COG0336@2	NA|NA|NA	J	Belongs to the RNA methyltransferase TrmD family
PAPOILPD_00071	353496.LBU_1175	0.0	1156.0	Lactobacillaceae	snf		2.7.11.1	ko:K08282					ko00000,ko01000				Bacteria	1TPFZ@1239,3F52K@33958,4HAIF@91061,COG0553@1,COG0553@2	NA|NA|NA	KL	domain protein
PAPOILPD_00072	1293597.BN147_06200	3.6e-55	220.7	Lactobacillaceae	rplS	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02884	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6FT@1239,3F6K4@33958,4HIK3@91061,COG0335@1,COG0335@2	NA|NA|NA	J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
PAPOILPD_00073	353496.LBU_1173	0.0	1135.6	Lactobacillaceae	XK27_00340		3.1.3.5	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110		R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000				Bacteria	1TPV2@1239,3F4S2@33958,4HB9S@91061,COG0737@1,COG0737@2	NA|NA|NA	F	Belongs to the 5'-nucleotidase family
PAPOILPD_00074	353496.LBU_1172	0.0	1162.9	Lactobacillaceae													Bacteria	1V2H3@1239,28PUF@1,2ZCFF@2,3F3KN@33958,4HRKS@91061	NA|NA|NA	S	TerB-C domain
PAPOILPD_00075	390333.Ldb1361	9.2e-245	852.4	Lactobacillaceae													Bacteria	1TQPH@1239,3F54M@33958,4HCUW@91061,COG1135@1,COG1135@2	NA|NA|NA	P	P-loop Domain of unknown function (DUF2791)
PAPOILPD_00076	353496.LBU_1170	0.0	1457.6	Lactobacillaceae	lhr			ko:K03724					ko00000,ko01000,ko03400				Bacteria	1UHYQ@1239,3F42E@33958,4HD4E@91061,COG1201@1,COG1201@2	NA|NA|NA	L	DEAD DEAH box helicase
PAPOILPD_00077	390333.Ldb1359	9.2e-95	352.8	Lactobacillaceae													Bacteria	1U7J1@1239,29Q5U@1,30B4R@2,3F9SH@33958,4IHFU@91061	NA|NA|NA		
PAPOILPD_00078	390333.Ldb1358	1e-148	532.7	Lactobacillaceae	glnH			ko:K10039	ko02010,map02010	M00228			ko00000,ko00001,ko00002,ko02000	3.A.1.3			Bacteria	1TT11@1239,3F4GG@33958,4HAHV@91061,COG0834@1,COG0834@2	NA|NA|NA	ET	ABC transporter substrate-binding protein
PAPOILPD_00079	390333.Ldb1357	2.8e-146	524.6	Lactobacillaceae	glcU			ko:K05340					ko00000,ko02000	2.A.7.5			Bacteria	1UBJV@1239,3FB9E@33958,4HB7E@91061,COG4975@1,COG4975@2	NA|NA|NA	U	ribose uptake protein RbsU
PAPOILPD_00080	353496.LBU_1165	1.3e-113	415.6	Lactobacillaceae	lexA		3.4.21.88	ko:K01356		M00729			ko00000,ko00002,ko01000,ko01002,ko03400				Bacteria	1TQ3H@1239,3F3JG@33958,4HBHA@91061,COG1974@1,COG1974@2	NA|NA|NA	K	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PAPOILPD_00081	353496.LBU_1164	2.6e-33	147.5	Lactobacillaceae	ynzC												Bacteria	1VEKJ@1239,3F87S@33958,4HNIB@91061,COG4224@1,COG4224@2	NA|NA|NA	S	UPF0291 protein
PAPOILPD_00082	353496.LBU_1163	2.3e-31	141.0	Lactobacillaceae	yneF			ko:K09976					ko00000				Bacteria	1VEJC@1239,3F809@33958,4HKMJ@91061,COG3763@1,COG3763@2	NA|NA|NA	S	Uncharacterised protein family (UPF0154)
PAPOILPD_00083	390333.Ldb1353	0.0	1114.4	Lactobacillaceae	mdlA	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0008144,GO:0016020,GO:0016021,GO:0017076,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044425,GO:0044464,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363		ko:K06148,ko:K18889	ko02010,map02010	M00707			ko00000,ko00001,ko00002,ko02000	3.A.1,3.A.1.106.13,3.A.1.106.5			Bacteria	1TP0B@1239,3F3PD@33958,4HA3S@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
PAPOILPD_00084	353496.LBU_1161	0.0	1159.1	Lactobacillaceae	mdlB	GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008144,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0034040,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043492,GO:0044425,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363		ko:K06147,ko:K18890	ko02010,map02010	M00707			ko00000,ko00001,ko00002,ko02000	3.A.1.106,3.A.1.106.13,3.A.1.106.5,3.A.1.109,3.A.1.21			Bacteria	1TP0B@1239,3F3PD@33958,4HA3S@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
PAPOILPD_00085	353496.LBU_1160	1.4e-69	268.9	Lactobacillaceae	pheB		5.4.99.5	ko:K06209	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024,M00025	R01715	RC03116	ko00000,ko00001,ko00002,ko01000			iYO844.BSU27910	Bacteria	1VAJ9@1239,3F6TJ@33958,4HFRC@91061,COG4492@1,COG4492@2	NA|NA|NA	S	Belongs to the UPF0735 family
PAPOILPD_00086	390333.Ldb1350	5e-207	726.9	Lactobacillaceae	hom		1.1.1.3	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	M00017,M00018	R01773,R01775	RC00087	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS06610	Bacteria	1TQ2H@1239,3F5BM@33958,4HBAP@91061,COG0460@1,COG0460@2	NA|NA|NA	E	homoserine dehydrogenase
PAPOILPD_00087	353496.LBU_1158	1.4e-215	755.4	Lactobacillaceae	yclM		2.7.2.4	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPQJ@1239,3F48V@33958,4HAEP@91061,COG0527@1,COG0527@2	NA|NA|NA	E	Belongs to the aspartokinase family
PAPOILPD_00088	353496.LBU_1157	9.1e-181	639.4	Lactobacillaceae	asd		1.2.1.11	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R02291	RC00684	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPC6@1239,3F4S9@33958,4HA9H@91061,COG0136@1,COG0136@2	NA|NA|NA	E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PAPOILPD_00089	1423748.BALB01000061_gene2095	2.7e-157	561.6	Lactobacillaceae				ko:K07493					ko00000				Bacteria	1TP4C@1239,3F4RA@33958,4HAXJ@91061,COG3328@1,COG3328@2	NA|NA|NA	L	Transposase
PAPOILPD_00090	1293597.BN147_07045	1.1e-65	255.8	Lactobacillaceae	rpsI	GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02996	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3MQ@1239,3F656@33958,4HH3B@91061,COG0103@1,COG0103@2	NA|NA|NA	J	Belongs to the universal ribosomal protein uS9 family
PAPOILPD_00091	353496.LBU_0351	1.2e-76	292.4	Lactobacillaceae	rplM	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070180,GO:0071704,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02871	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3HX@1239,3F696@33958,4HG0I@91061,COG0102@1,COG0102@2	NA|NA|NA	J	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PAPOILPD_00092	353496.LBU_0350	3.9e-150	537.3	Lactobacillaceae	truA	GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360	5.4.99.12	ko:K06173					ko00000,ko01000,ko03016				Bacteria	1TQUY@1239,3F4KC@33958,4HCFI@91061,COG0101@1,COG0101@2	NA|NA|NA	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
PAPOILPD_00093	353496.LBU_0349	2.6e-141	508.1	Lactobacillaceae	ecfT	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015238,GO:0015711,GO:0015893,GO:0016020,GO:0022857,GO:0032217,GO:0032218,GO:0034220,GO:0035461,GO:0042221,GO:0042493,GO:0044464,GO:0050896,GO:0051179,GO:0051180,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0090482,GO:0098656		ko:K02008,ko:K16783,ko:K16785	ko02010,map02010	M00245,M00246,M00581,M00582			ko00000,ko00001,ko00002,ko02000	3.A.1.18,3.A.1.22,3.A.1.23,3.A.1.25,3.A.1.25.1,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1TQ0E@1239,3F3UW@33958,4H9VT@91061,COG0619@1,COG0619@2	NA|NA|NA	U	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAPOILPD_00094	353496.LBU_0348	3.7e-162	577.4	Lactobacillaceae	ecfA	GO:0000166,GO:0003674,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0008144,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015238,GO:0015711,GO:0015893,GO:0016020,GO:0017076,GO:0022857,GO:0030554,GO:0032217,GO:0032218,GO:0032553,GO:0032555,GO:0032559,GO:0034220,GO:0035461,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0044464,GO:0050896,GO:0051179,GO:0051180,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0090482,GO:0097159,GO:0097367,GO:0098656,GO:1901265,GO:1901363	3.6.3.55	ko:K02068,ko:K06857,ko:K16784,ko:K16786,ko:K16787	ko02010,map02010	M00186,M00211,M00581,M00582	R10531	RC00002	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.25.1,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35,3.A.1.6.2,3.A.1.6.4			Bacteria	1TPH8@1239,3F48E@33958,4HA7T@91061,COG1122@1,COG1122@2	NA|NA|NA	P	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAPOILPD_00095	353496.LBU_0347	6.9e-153	546.6	Lactobacillaceae	ecfA1	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015238,GO:0015711,GO:0015893,GO:0016020,GO:0022857,GO:0032217,GO:0032218,GO:0034220,GO:0035461,GO:0042221,GO:0042493,GO:0044464,GO:0050896,GO:0051179,GO:0051180,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0090482,GO:0098656		ko:K16784,ko:K16786,ko:K16787	ko02010,map02010	M00581,M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.25.1,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1TPH8@1239,3F3VD@33958,4H9R8@91061,COG1122@1,COG1122@2	NA|NA|NA	P	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAPOILPD_00096	353496.LBU_0346	1.3e-61	242.3	Lactobacillaceae	rplQ	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02879,ko:K16193	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6JQ@1239,3F6GJ@33958,4HGX2@91061,COG0203@1,COG0203@2	NA|NA|NA	J	Ribosomal protein L17
PAPOILPD_00097	353496.LBU_0345	1.4e-170	605.5	Lactobacillaceae	rpoA	GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576	2.7.7.6	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	1TPR8@1239,3F3W6@33958,4H9R1@91061,COG0202@1,COG0202@2	NA|NA|NA	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAPOILPD_00098	353496.LBU_0344	1.2e-62	245.7	Lactobacillaceae	rpsK	GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02948	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3IK@1239,3F67D@33958,4HH2T@91061,COG0100@1,COG0100@2	NA|NA|NA	J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PAPOILPD_00099	353496.LBU_0343	7.2e-56	223.0	Lactobacillaceae	rpsM	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02952	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3JH@1239,3F6GN@33958,4HGX6@91061,COG0099@1,COG0099@2	NA|NA|NA	J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PAPOILPD_00100	1423748.BALB01000002_gene307	8.4e-34	149.1	Lactobacillaceae	infA	GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0009986,GO:0016020,GO:0030246,GO:0030247,GO:0030312,GO:0040007,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071944,GO:2001065		ko:K02518					ko00000,ko03012				Bacteria	1V9ZK@1239,3F7CW@33958,4HKF4@91061,COG0361@1,COG0361@2	NA|NA|NA	J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PAPOILPD_00101	353496.LBU_0341	1.9e-118	431.8	Lactobacillaceae	adk	GO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147			iHN637.CLJU_RS20110	Bacteria	1TP27@1239,3F3KB@33958,4HA89@91061,COG0563@1,COG0563@2	NA|NA|NA	F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
PAPOILPD_00102	353496.LBU_0340	2.6e-236	824.3	Lactobacillaceae	secY	GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040007,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680		ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5			Bacteria	1TPHB@1239,3F4FV@33958,4HAWH@91061,COG0201@1,COG0201@2	NA|NA|NA	U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
PAPOILPD_00103	353496.LBU_0339	1.8e-72	278.5	Lactobacillaceae	rplO	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02876	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3KE@1239,3F675@33958,4HFPW@91061,COG0200@1,COG0200@2	NA|NA|NA	J	Binds to the 23S rRNA
PAPOILPD_00104	1293597.BN147_06970	1.3e-24	118.2	Lactobacillaceae	rpmD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904		ko:K02907	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEG4@1239,3F7ZU@33958,4HNHF@91061,COG1841@1,COG1841@2	NA|NA|NA	J	Ribosomal protein L30
PAPOILPD_00105	353496.LBU_0337	4.9e-85	320.5	Lactobacillaceae	rpsE	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904		ko:K02988	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V1B1@1239,3F3VY@33958,4HFN4@91061,COG0098@1,COG0098@2	NA|NA|NA	J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PAPOILPD_00106	353496.LBU_0336	5.7e-56	223.4	Lactobacillaceae	rplR	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02881	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6DM@1239,3F6KN@33958,4HIGF@91061,COG0256@1,COG0256@2	NA|NA|NA	J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PAPOILPD_00107	353496.LBU_0335	1e-90	339.3	Lactobacillaceae	rplF	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02933	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V1FC@1239,3F4G5@33958,4HFQD@91061,COG0097@1,COG0097@2	NA|NA|NA	J	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PAPOILPD_00108	353496.LBU_0334	7.2e-68	263.1	Lactobacillaceae	rpsH	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010608,GO:0015935,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031329,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043487,GO:0043488,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904		ko:K02994	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3KK@1239,3F64E@33958,4HH32@91061,COG0096@1,COG0096@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PAPOILPD_00109	353496.LBU_0332	1.6e-94	352.1	Lactobacillaceae	rplE	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02931	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TPE0@1239,3F3Q7@33958,4HBAX@91061,COG0094@1,COG0094@2	NA|NA|NA	J	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PAPOILPD_00110	353496.LBU_0331	1e-32	145.6	Lactobacillaceae	rplX	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02895	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V9ZQ@1239,3F6X5@33958,4HKH9@91061,COG0198@1,COG0198@2	NA|NA|NA	J	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PAPOILPD_00111	1293597.BN147_06930	1.6e-58	231.9	Lactobacillaceae	rplN	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02874	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3N0@1239,3F6GT@33958,4HGYR@91061,COG0093@1,COG0093@2	NA|NA|NA	J	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PAPOILPD_00112	390333.Ldb0405	3.8e-41	173.7	Lactobacillaceae	rpsQ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02961	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V9YC@1239,3F7FX@33958,4HKDN@91061,COG0186@1,COG0186@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PAPOILPD_00113	353496.LBU_0328	3.7e-25	120.2	Lactobacillaceae	rpmC	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02904	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEME@1239,3F82Z@33958,4HNUP@91061,COG0255@1,COG0255@2	NA|NA|NA	J	Belongs to the universal ribosomal protein uL29 family
PAPOILPD_00114	1293597.BN147_06915	1.9e-77	295.0	Lactobacillaceae	rplP	GO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02878	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V1AY@1239,3F653@33958,4HFPN@91061,COG0197@1,COG0197@2	NA|NA|NA	J	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PAPOILPD_00115	353496.LBU_0326	4.7e-120	437.2	Lactobacillaceae	rpsC	GO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02982	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TPCP@1239,3F3Q8@33958,4HAUR@91061,COG0092@1,COG0092@2	NA|NA|NA	J	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PAPOILPD_00116	1293597.BN147_06905	8.9e-54	216.1	Lactobacillaceae	rplV	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02890	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6PU@1239,3F6K6@33958,4HIK2@91061,COG0091@1,COG0091@2	NA|NA|NA	J	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PAPOILPD_00117	353496.LBU_0324	1.3e-44	185.3	Lactobacillaceae	rpsS	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02965	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6CX@1239,3F6XP@33958,4HIG0@91061,COG0185@1,COG0185@2	NA|NA|NA	J	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PAPOILPD_00118	353496.LBU_0323	1.4e-153	548.9	Lactobacillaceae	rplB	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02886	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TP9X@1239,3F3XI@33958,4HAE8@91061,COG0090@1,COG0090@2	NA|NA|NA	J	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PAPOILPD_00119	353496.LBU_0322	3.1e-44	184.1	Lactobacillaceae	rplW	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02892	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VA4W@1239,3F6Z2@33958,4HKCV@91061,COG0089@1,COG0089@2	NA|NA|NA	J	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
PAPOILPD_00120	353496.LBU_0321	1e-105	389.4	Lactobacillaceae	rplD	GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006355,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008428,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030234,GO:0030312,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032069,GO:0032074,GO:0032268,GO:0032269,GO:0032991,GO:0032993,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042788,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060698,GO:0060699,GO:0060700,GO:0060701,GO:0060702,GO:0065003,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0098772,GO:0140110,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141		ko:K02926,ko:K16193	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TPGW@1239,3F3QD@33958,4HB01@91061,COG0088@1,COG0088@2	NA|NA|NA	J	Forms part of the polypeptide exit tunnel
PAPOILPD_00121	353496.LBU_0320	1.8e-110	405.2	Lactobacillaceae	rplC	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015934,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031325,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090069,GO:0090070,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000232,GO:2000234		ko:K02906	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TPFT@1239,3F45I@33958,4HAEN@91061,COG0087@1,COG0087@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PAPOILPD_00122	1293597.BN147_06875	1.3e-48	198.7	Lactobacillaceae	rpsJ	GO:0001072,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015935,GO:0019219,GO:0019222,GO:0019538,GO:0022626,GO:0022627,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140110,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2001141		ko:K02946	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6C9@1239,3F6KC@33958,4HIKH@91061,COG0051@1,COG0051@2	NA|NA|NA	J	Involved in the binding of tRNA to the ribosomes
PAPOILPD_00123	353496.LBU_0318	0.0	1360.1	Lactobacillaceae	fusA	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02355					ko00000,ko03012,ko03029				Bacteria	1TPF9@1239,3F3JR@33958,4HAB8@91061,COG0480@1,COG0480@2	NA|NA|NA	J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PAPOILPD_00124	353496.LBU_0317	3.5e-82	310.8	Lactobacillaceae	rpsG	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016020,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02992	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V1GG@1239,3F3RX@33958,4H9PA@91061,COG0049@1,COG0049@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
PAPOILPD_00125	353496.LBU_0316	1e-69	269.2	Lactobacillaceae	rpsL	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02950	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V1FJ@1239,3F64B@33958,4HFMZ@91061,COG0048@1,COG0048@2	NA|NA|NA	J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PAPOILPD_00126	1423758.BN55_00580	3.8e-12	77.4	Bacteria													Bacteria	COG0561@1,COG0561@2	NA|NA|NA	Q	phosphatase activity
PAPOILPD_00127	1423748.BALB01000004_gene575	7.2e-14	82.4	Lactobacillaceae													Bacteria	1TR16@1239,3F55S@33958,4HCZ6@91061,COG0561@1,COG0561@2	NA|NA|NA	S	hydrolase
PAPOILPD_00128	891391.LAC30SC_01395	3.1e-08	65.5	Lactobacillaceae	pilD		3.4.23.43	ko:K02236,ko:K02506,ko:K02654		M00331,M00429			ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2			Bacteria	1W118@1239,3F863@33958,4HZ6B@91061,COG1989@1,COG1989@2	NA|NA|NA	NOU	Bacterial Peptidase A24 N-terminal domain
PAPOILPD_00129	353496.LBU_0314	0.0	2401.7	Lactobacillaceae	rpoC	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	1TNYT@1239,3F3KF@33958,4HA24@91061,COG0086@1,COG0086@2	NA|NA|NA	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAPOILPD_00130	353496.LBU_0313	0.0	2265.3	Lactobacillaceae	rpoB	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	1TP96@1239,3F4ET@33958,4H9PK@91061,COG0085@1,COG0085@2	NA|NA|NA	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAPOILPD_00132	1293597.BN147_06835	1.8e-50	205.7	Lactobacillaceae													Bacteria	1U72J@1239,29PUW@1,30AT3@2,3F8WA@33958,4IGX4@91061	NA|NA|NA		
PAPOILPD_00133	390333.Ldb0383	0.0	1523.8	Lactobacillaceae	clpC	GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170		ko:K03696	ko01100,map01100				ko00000,ko03110				Bacteria	1TPMU@1239,3F3RV@33958,4HACY@91061,COG0542@1,COG0542@2	NA|NA|NA	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
PAPOILPD_00134	353496.LBU_0309	1.3e-81	308.9	Lactobacillaceae	yebR		1.8.4.14	ko:K08968	ko00270,map00270		R02025	RC00639	ko00000,ko00001,ko01000				Bacteria	1V6GQ@1239,3F6NT@33958,4HH7X@91061,COG1956@1,COG1956@2	NA|NA|NA	T	GAF domain-containing protein
PAPOILPD_00138	353496.LBU_0308	1e-14	85.5	Lactobacillaceae	XK27_00160												Bacteria	1V5Q4@1239,29N5D@1,30939@2,3F5S8@33958,4HHUF@91061	NA|NA|NA	S	Domain of unknown function (DUF5052)
PAPOILPD_00139	353496.LBU_0308	8.6e-69	266.2	Lactobacillaceae	XK27_00160												Bacteria	1V5Q4@1239,29N5D@1,30939@2,3F5S8@33958,4HHUF@91061	NA|NA|NA	S	Domain of unknown function (DUF5052)
PAPOILPD_00140	353496.LBU_0307	9.7e-199	699.5	Lactobacillaceae	metY		2.5.1.49	ko:K01740	ko00270,ko01100,map00270,map01100		R01287,R04859	RC00020,RC02821,RC02848	ko00000,ko00001,ko01000				Bacteria	1VYCY@1239,3FBSS@33958,4H9X5@91061,COG2873@1,COG2873@2	NA|NA|NA	E	Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
PAPOILPD_00142	390333.Ldb0375	8.1e-79	300.1	Bacteria				ko:K03320					ko00000,ko02000	1.A.11			Bacteria	COG2199@1,COG3706@2	NA|NA|NA	T	diguanylate cyclase activity
PAPOILPD_00144	1293597.BN147_05150	4e-276	956.8	Lactobacillaceae	lysS	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.1.1.6	ko:K04567	ko00970,map00970	M00359,M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TP2P@1239,3F439@33958,4H9X4@91061,COG1190@1,COG1190@2	NA|NA|NA	J	Belongs to the class-II aminoacyl-tRNA synthetase family
PAPOILPD_00145	353496.LBU_0302	2.3e-195	688.0	Lactobacillaceae	dus			ko:K05540					ko00000,ko01000,ko03016				Bacteria	1TQ2R@1239,3F4C6@33958,4HA9K@91061,COG0042@1,COG0042@2	NA|NA|NA	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PAPOILPD_00146	390333.Ldb0371	8.3e-251	872.5	Lactobacillaceae	pepT2		3.4.11.14,3.4.11.4	ko:K01258,ko:K01263					ko00000,ko01000,ko01002				Bacteria	1TP3A@1239,3FB44@33958,4HA04@91061,COG2195@1,COG2195@2	NA|NA|NA	E	Cleaves the N-terminal amino acid of tripeptides
PAPOILPD_00147	390333.Ldb0370	2.3e-298	1030.8	Lactobacillaceae				ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00148	353496.LBU_0299	2e-163	581.6	Lactobacillaceae	hslO	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0031647,GO:0036506,GO:0042026,GO:0042802,GO:0043167,GO:0043169,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0065007,GO:0065008		ko:K04083					ko00000,ko03110				Bacteria	1TRCH@1239,3F42B@33958,4HAFR@91061,COG1281@1,COG1281@2	NA|NA|NA	O	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PAPOILPD_00149	353496.LBU_0298	0.0	1187.6	Lactobacillaceae	ftsH	GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0030428,GO:0032502,GO:0042623,GO:0043170,GO:0043934,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575		ko:K03798		M00742			ko00000,ko00002,ko01000,ko01002,ko03110				Bacteria	1TPTV@1239,3F49Z@33958,4HAJB@91061,COG0465@1,COG0465@2	NA|NA|NA	O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PAPOILPD_00150	390333.Ldb0367	1.4e-245	855.1	Lactobacillaceae	tilS		2.4.2.8,6.3.4.19	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110		R01132,R01229,R02142,R09597	RC00063,RC00122,RC02633,RC02634	ko00000,ko00001,ko01000,ko03016				Bacteria	1TPXP@1239,3F4GY@33958,4H9ZM@91061,COG0037@1,COG0037@2	NA|NA|NA	J	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
PAPOILPD_00151	353496.LBU_0296	1.7e-60	238.4	Lactobacillaceae	yabR			ko:K07570,ko:K07571					ko00000				Bacteria	1UI95@1239,3F6P8@33958,4ISGM@91061,COG1098@1,COG1098@2	NA|NA|NA	J	S1 RNA binding domain
PAPOILPD_00152	390333.Ldb0365	1.5e-59	235.3	Lactobacillaceae	divIC			ko:K05589,ko:K13052					ko00000,ko03036				Bacteria	1VKC5@1239,3F76Z@33958,4HR53@91061,COG2919@1,COG2919@2	NA|NA|NA	D	Septum formation initiator
PAPOILPD_00153	353496.LBU_0294	3.2e-34	150.6	Lactobacillaceae	yabO	GO:0008150,GO:0040007											Bacteria	1VEI5@1239,3F7JX@33958,4HKJJ@91061,COG1188@1,COG1188@2	NA|NA|NA	J	S4 domain protein
PAPOILPD_00154	353496.LBU_0293	0.0	2243.0	Lactobacillaceae	mfd			ko:K03723	ko03420,map03420				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPF1@1239,3F4KU@33958,4H9NB@91061,COG1197@1,COG1197@2	NA|NA|NA	L	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PAPOILPD_00155	353496.LBU_0292	1.1e-103	382.5	Lactobacillaceae	pth	GO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101	3.1.1.29	ko:K01056					ko00000,ko01000,ko03012				Bacteria	1V3NB@1239,3F3VZ@33958,4HH2Z@91061,COG0193@1,COG0193@2	NA|NA|NA	J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
PAPOILPD_00156	353496.LBU_0291	7.7e-126	456.4	Lactobacillaceae													Bacteria	1TR5G@1239,3F3JY@33958,4H9ZA@91061,COG0517@1,COG0517@2	NA|NA|NA	S	(CBS) domain
PAPOILPD_00157	390333.Ldb0360	7.6e-216	756.1	Lactobacillaceae	alr		5.1.1.1	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502		R00401	RC00285	ko00000,ko00001,ko01000,ko01011				Bacteria	1TNYY@1239,3F3X2@33958,4HA95@91061,COG0787@1,COG0787@2	NA|NA|NA	E	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PAPOILPD_00158	353496.LBU_0289	4.1e-69	267.3	Lactobacillaceae	acpS		2.7.6.3,2.7.8.7,5.1.1.1	ko:K00950,ko:K00997,ko:K01775	ko00473,ko00770,ko00790,ko01100,ko01502,map00473,map00770,map00790,map01100,map01502	M00126,M00841	R00401,R01625,R03503	RC00002,RC00017,RC00285	ko00000,ko00001,ko00002,ko01000,ko01011			iYO844.BSU04620	Bacteria	1VA0T@1239,3F6HC@33958,4HKBI@91061,COG0736@1,COG0736@2	NA|NA|NA	I	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
PAPOILPD_00159	353496.LBU_0288	7.4e-232	809.7	Lactobacillaceae	cshA	GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009266,GO:0009295,GO:0009409,GO:0009628,GO:0009987,GO:0010501,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363	3.6.4.13	ko:K05592,ko:K18692	ko03018,map03018				ko00000,ko00001,ko01000,ko03009,ko03019				Bacteria	1TPAP@1239,3F46Q@33958,4HAB3@91061,COG0513@1,COG0513@2	NA|NA|NA	F	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
PAPOILPD_00160	390333.Ldb0357	2.2e-254	884.4	Lactobacillaceae	murF		6.3.2.10	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502		R04573,R04617	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	1VT78@1239,3F4SK@33958,4HACR@91061,COG0770@1,COG0770@2	NA|NA|NA	M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
PAPOILPD_00161	1293597.BN147_05085	8e-41	172.6	Lactobacillaceae	rpmE2	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033554,GO:0034224,GO:0034641,GO:0034645,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0120127,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02909	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEGU@1239,3FCDM@33958,4HNQF@91061,COG0254@1,COG0254@2	NA|NA|NA	J	Ribosomal protein L31
PAPOILPD_00162	390333.Ldb0355	1.3e-235	822.0	Lactobacillaceae	murA	GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008760,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016740,GO:0016765,GO:0030203,GO:0034645,GO:0042221,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0070589,GO:0070887,GO:0071236,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	2.5.1.7	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100		R00660	RC00350	ko00000,ko00001,ko01000,ko01011			iYO844.BSU37100	Bacteria	1TPAU@1239,3F3P8@33958,4H9KI@91061,COG0766@1,COG0766@2	NA|NA|NA	M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PAPOILPD_00163	353496.LBU_0284	3.4e-310	1070.1	Lactobacillaceae	pyrG	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	6.3.4.2	ko:K01937	ko00240,ko01100,map00240,map01100	M00052	R00571,R00573	RC00010,RC00074	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS01075,iNJ661.Rv1699	Bacteria	1TP34@1239,3F42X@33958,4H9X6@91061,COG0504@1,COG0504@2	NA|NA|NA	F	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
PAPOILPD_00164	1293597.BN147_05070	1.8e-64	252.3	Lactobacillaceae	rpoE	GO:0003674,GO:0003824,GO:0003899,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576		ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko03021,ko03400				Bacteria	1V6WX@1239,3F55D@33958,4HIUK@91061,COG3343@1,COG3343@2	NA|NA|NA	K	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
PAPOILPD_00165	353496.LBU_0282	7.4e-65	253.1	Lactobacillaceae													Bacteria	1U64K@1239,29P4Y@1,30A35@2,3F712@33958,4IFU4@91061	NA|NA|NA	S	Domain of unknown function (DUF1934)
PAPOILPD_00166	353496.LBU_0281	1.8e-253	881.3	Lactobacillaceae	ywfO	GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576		ko:K06885					ko00000				Bacteria	1TPVB@1239,3FC99@33958,4IQRC@91061,COG1078@1,COG1078@2	NA|NA|NA	S	Metal dependent phosphohydrolases with conserved 'HD' motif.
PAPOILPD_00167	353496.LBU_0280	7.4e-175	619.8	Lactobacillaceae	prs		2.7.6.1	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	M00005	R01049	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_2848	Bacteria	1TQ6Q@1239,3F3U2@33958,4HB61@91061,COG0462@1,COG0462@2	NA|NA|NA	F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAPOILPD_00168	1293597.BN147_02345	2.4e-46	192.6	Lactobacillaceae													Bacteria	1U77N@1239,29V6Q@1,30AWW@2,3F92X@33958,4IH2G@91061	NA|NA|NA		
PAPOILPD_00169	353496.LBU_0278	1.3e-249	868.6	Lactobacillaceae	glmU	GO:0000270,GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0003977,GO:0005488,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006629,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0019134,GO:0022610,GO:0030203,GO:0030260,GO:0033692,GO:0034637,GO:0034645,GO:0035635,GO:0040007,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044650,GO:0046872,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509	2.3.1.157,2.7.7.23	ko:K04042,ko:K11528	ko00520,ko01100,ko01130,map00520,map01100,map01130	M00362	R00416,R05332	RC00002,RC00004,RC00166	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP88@1239,3F4I3@33958,4H9V5@91061,COG1207@1,COG1207@2	NA|NA|NA	M	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PAPOILPD_00170	353496.LBU_0277	1e-148	532.7	Lactobacillaceae	purR		2.4.2.22,2.4.2.7	ko:K00759,ko:K03816,ko:K09685	ko00230,ko01100,ko01110,map00230,map01100,map01110		R00190,R01229,R02142,R04378	RC00063,RC00122	ko00000,ko00001,ko01000,ko03000,ko04147				Bacteria	1TPN9@1239,3F3NH@33958,4HB8I@91061,COG0503@1,COG0503@2	NA|NA|NA	F	pur operon repressor
PAPOILPD_00171	353496.LBU_1022	6.4e-201	706.4	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_00172	390333.Ldb0301	0.0	1289.2	Lactobacillaceae													Bacteria	1V7E2@1239,3F5II@33958,4HJ1U@91061,COG0515@1,COG0515@2	NA|NA|NA	KLT	Protein kinase domain
PAPOILPD_00173	390333.Ldb0302	6.9e-279	966.1	Lactobacillaceae													Bacteria	1TSRV@1239,3F46B@33958,4HCIZ@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC-type multidrug transport system, ATPase and permease components
PAPOILPD_00174	353496.LBU_0236	3.8e-143	514.2	Lactobacillaceae				ko:K03490					ko00000,ko03000				Bacteria	1TVGS@1239,3F5KS@33958,4I2JI@91061,COG1917@1,COG1917@2,COG2207@1,COG2207@2	NA|NA|NA	K	Transcriptional regulator
PAPOILPD_00175	353496.LBU_0237	1.7e-244	851.7	Lactobacillaceae			3.2.1.86	ko:K01223	ko00010,ko00500,map00010,map00500		R00839,R05133,R05134	RC00049,RC00171,RC00714	ko00000,ko00001,ko01000		GT1		Bacteria	1TP19@1239,3F3PQ@33958,4HA1W@91061,COG2723@1,COG2723@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 1 family
PAPOILPD_00178	353496.LBU_0106	3.9e-267	926.8	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_00180	353496.LBU_0453	1e-240	839.0	Lactobacillaceae	celB	GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0016020,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071944,GO:1901264,GO:1902815		ko:K02761	ko00500,ko02060,map00500,map02060	M00275	R11170,R11172	RC00017,RC03206	ko00000,ko00001,ko00002,ko02000	4.A.3.2		iECABU_c1320.ECABU_c19930	Bacteria	1TP8D@1239,3F4VG@33958,4H9W2@91061,COG1455@1,COG1455@2	NA|NA|NA	G	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
PAPOILPD_00181	390333.Ldb0541	1e-205	722.6	Lactobacillaceae	yfmL	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360	3.6.4.13	ko:K05592,ko:K18692	ko03018,map03018				ko00000,ko00001,ko01000,ko03009,ko03019				Bacteria	1TQ9R@1239,3F4K8@33958,4HANR@91061,COG0513@1,COG0513@2	NA|NA|NA	L	DEAD DEAH box helicase
PAPOILPD_00182	353496.LBU_0451	4.3e-121	440.7	Lactobacillaceae	lytC		3.2.1.17,3.2.1.96	ko:K01185,ko:K01227,ko:K07273	ko00511,map00511				ko00000,ko00001,ko01000				Bacteria	1V484@1239,3F4K0@33958,4HQWA@91061,COG3757@1,COG3757@2	NA|NA|NA	M	Glycosyl hydrolases family 25
PAPOILPD_00183	353496.LBU_0450	7.1e-226	789.6	Lactobacillaceae	potE			ko:K03294					ko00000	2.A.3.2			Bacteria	1TQ48@1239,3F3YJ@33958,4HBGT@91061,COG0531@1,COG0531@2	NA|NA|NA	E	amino acid
PAPOILPD_00184	353496.LBU_0449	7.1e-101	373.2	Lactobacillaceae	hpt	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.4.2.8	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110		R00190,R01132,R01229,R02142,R08237,R08238,R08245	RC00063,RC00122	ko00000,ko00001,ko01000				Bacteria	1V1C9@1239,3F56C@33958,4HFZ2@91061,COG0634@1,COG0634@2	NA|NA|NA	F	Belongs to the purine pyrimidine phosphoribosyltransferase family
PAPOILPD_00185	353496.LBU_0448	7.9e-244	849.4	Lactobacillaceae	yhdP			ko:K03699,ko:K06189					ko00000,ko02000,ko02042	9.A.40.1.2			Bacteria	1TPN0@1239,3F3TX@33958,4H9SB@91061,COG1253@1,COG1253@2	NA|NA|NA	S	Transporter associated domain
PAPOILPD_00186	1121914.AUDW01000021_gene1404	9.8e-09	66.2	Bacilli			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	1UN9R@1239,4HGJ5@91061,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
PAPOILPD_00187	390333.Ldb0534	0.0	1666.0	Lactobacillaceae	xfp		4.1.2.22,4.1.2.9	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120		R00761,R01621	RC00032,RC00226	ko00000,ko00001,ko01000				Bacteria	1TR23@1239,3F3TZ@33958,4HC2J@91061,COG3957@1,COG3957@2	NA|NA|NA	G	Phosphoketolase
PAPOILPD_00188	390333.Ldb0533	1.9e-127	461.8	Lactobacillaceae	gntR			ko:K03710					ko00000,ko03000				Bacteria	1TTCD@1239,3F4DA@33958,4HEXQ@91061,COG2188@1,COG2188@2	NA|NA|NA	K	UbiC transcription regulator-associated domain protein
PAPOILPD_00189	353496.LBU_0442	2.1e-171	608.2	Lactobacillaceae	rihB		3.2.2.1	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100		R01245,R01273,R01677,R01770,R02143	RC00033,RC00063,RC00122,RC00318,RC00485	ko00000,ko00001,ko01000				Bacteria	1TSSS@1239,3F4T0@33958,4HB17@91061,COG1957@1,COG1957@2	NA|NA|NA	F	Nucleoside
PAPOILPD_00190	353496.LBU_0441	3.6e-123	447.6	Lactobacillaceae	rpiA	GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564	2.7.1.12,2.7.1.15,5.3.1.6	ko:K00851,ko:K00852,ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167,M00580	R01051,R01056,R01737,R02750	RC00002,RC00017,RC00434	ko00000,ko00001,ko00002,ko01000				Bacteria	1V1DB@1239,3F43N@33958,4HFQ7@91061,COG0120@1,COG0120@2	NA|NA|NA	G	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PAPOILPD_00191	353496.LBU_0440	6.5e-119	433.3	Lactobacillaceae	rpe		5.1.3.1	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01529	RC00540	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQK8@1239,3F4KX@33958,4H9RW@91061,COG0036@1,COG0036@2	NA|NA|NA	G	Belongs to the ribulose-phosphate 3-epimerase family
PAPOILPD_00192	353496.LBU_0439	5.9e-158	563.5	Lactobacillaceae	rbsK		2.7.1.15	ko:K00852	ko00030,map00030		R01051,R02750	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	1TQRC@1239,3F3S5@33958,4HA87@91061,COG0524@1,COG0524@2	NA|NA|NA	H	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAPOILPD_00193	353496.LBU_0438	8.6e-79	299.7	Lactobacillaceae													Bacteria	1U6NF@1239,2C92N@1,30AH2@2,3F86Z@33958,4IGFE@91061	NA|NA|NA		
PAPOILPD_00194	353496.LBU_0437	2.6e-36	157.5	Lactobacillaceae													Bacteria	1U803@1239,29QF5@1,30BEG@2,3FADF@33958,4IHXG@91061	NA|NA|NA		
PAPOILPD_00195	353496.LBU_0436	7e-70	270.4	Lactobacillaceae													Bacteria	1VM5V@1239,2EVIX@1,33NZ2@2,3F8YP@33958,4HSE6@91061	NA|NA|NA		
PAPOILPD_00196	1293597.BN147_01215	8.9e-106	390.2	Lactobacillaceae													Bacteria	1V6G9@1239,2CJHH@1,32SA1@2,3F5FF@33958,4HIZ6@91061	NA|NA|NA	S	Protein of unknown function (DUF2974)
PAPOILPD_00197	353496.LBU_0434	6.7e-262	909.4	Lactobacillaceae													Bacteria	1UCBA@1239,3F3JA@33958,4HBCI@91061,COG4320@1,COG4320@2	NA|NA|NA	S	Uncharacterized protein conserved in bacteria (DUF2252)
PAPOILPD_00198	353496.LBU_0433	0.0	1393.3	Lactobacillaceae	ppk	GO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0008976,GO:0009267,GO:0009405,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0015968,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0036293,GO:0040007,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044419,GO:0044464,GO:0046777,GO:0046872,GO:0050896,GO:0051704,GO:0051716,GO:0070482,GO:0071496,GO:0071704,GO:0071944,GO:1901564	2.7.4.1	ko:K00937	ko00190,ko03018,map00190,map03018				ko00000,ko00001,ko01000,ko03019			iJN746.PP_5217	Bacteria	1TNZM@1239,3F3PE@33958,4HA88@91061,COG0855@1,COG0855@2	NA|NA|NA	P	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
PAPOILPD_00199	353496.LBU_0432	6.5e-279	966.1	Lactobacillaceae	ppx3		3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230		R03409	RC00002	ko00000,ko00001,ko01000				Bacteria	1VT8Q@1239,3F49N@33958,4HB84@91061,COG0248@1,COG0248@2	NA|NA|NA	FP	exopolyphosphatase
PAPOILPD_00200	390333.Ldb0521	5.4e-150	537.0	Lactobacillaceae	glnH			ko:K10039	ko02010,map02010	M00228			ko00000,ko00001,ko00002,ko02000	3.A.1.3			Bacteria	1U7DE@1239,3F9F3@33958,4IH9B@91061,COG0834@1,COG0834@2	NA|NA|NA	ET	Bacterial periplasmic substrate-binding proteins
PAPOILPD_00201	390333.Ldb0520	8.2e-109	399.8	Lactobacillaceae	glnP	GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1903825,GO:1905039		ko:K02029,ko:K10002,ko:K10040	ko02010,ko02020,map02010,map02020	M00228,M00230,M00236			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4			Bacteria	1UJM4@1239,3F3WJ@33958,4HBAS@91061,COG0765@1,COG0765@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00202	390333.Ldb0519	5.1e-108	397.1	Lactobacillaceae	gluC	GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1903825,GO:1905039		ko:K10006,ko:K10040	ko02010,map02010	M00228,M00233			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.9			Bacteria	1TQ5K@1239,3F3XW@33958,4HFBH@91061,COG0765@1,COG0765@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00203	353496.LBU_0428	1.8e-145	521.9	Lactobacillaceae	glnH			ko:K10039	ko02010,map02010	M00228			ko00000,ko00001,ko00002,ko02000	3.A.1.3			Bacteria	1TT11@1239,3F4GG@33958,4HAHV@91061,COG0834@1,COG0834@2	NA|NA|NA	ET	ABC transporter substrate-binding protein
PAPOILPD_00204	353496.LBU_0427	7.2e-130	469.9	Lactobacillaceae	glnQ		3.6.3.21	ko:K02028,ko:K10041	ko02010,map02010	M00228,M00236			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3			Bacteria	1TNYD@1239,3F3QQ@33958,4H9WY@91061,COG1126@1,COG1126@2	NA|NA|NA	E	ABC transporter, ATP-binding protein
PAPOILPD_00205	390333.Ldb0516	1.5e-115	422.2	Lactobacillaceae	udk	GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.7.1.48	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100		R00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232	RC00002,RC00017	ko00000,ko00001,ko01000			iSBO_1134.SBO_0893	Bacteria	1TQ4V@1239,3FCEB@33958,4IQTA@91061,COG0572@1,COG0572@2	NA|NA|NA	F	Zeta toxin
PAPOILPD_00206	353496.LBU_0425	7e-110	403.3	Lactobacillaceae	udk	GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.7.1.48	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100		R00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232	RC00002,RC00017	ko00000,ko00001,ko01000			iSBO_1134.SBO_0893	Bacteria	1TQ4V@1239,3FCEB@33958,4IQTA@91061,COG0572@1,COG0572@2	NA|NA|NA	F	Zeta toxin
PAPOILPD_00208	353496.LBU_0423	2.3e-99	368.2	Lactobacillaceae				ko:K16925		M00582			ko00000,ko00002,ko02000	3.A.1.30			Bacteria	1V39N@1239,3F4QM@33958,4HF32@91061,COG4721@1,COG4721@2	NA|NA|NA	S	ABC-type cobalt transport system, permease component
PAPOILPD_00209	353496.LBU_0422	3.9e-209	733.8	Lactobacillaceae	pepA												Bacteria	1TNZT@1239,3F55I@33958,4H9SM@91061,COG1363@1,COG1363@2	NA|NA|NA	E	M42 glutamyl aminopeptidase
PAPOILPD_00210	353496.LBU_0421	7.2e-280	969.1	Lactobacillaceae	pipD			ko:K08659					ko00000,ko01000,ko01002				Bacteria	1TQ0F@1239,3F3M4@33958,4HC3G@91061,COG4690@1,COG4690@2	NA|NA|NA	E	Dipeptidase
PAPOILPD_00211	353496.LBU_0420	8.6e-142	509.6	Lactobacillaceae	murI	GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008881,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	5.1.1.3	ko:K01776	ko00471,ko01100,map00471,map01100		R00260	RC00302	ko00000,ko00001,ko01000,ko01011				Bacteria	1TPPR@1239,3FCA5@33958,4HBW9@91061,COG0796@1,COG0796@2	NA|NA|NA	M	Provides the (R)-glutamate required for cell wall biosynthesis
PAPOILPD_00212	390333.Ldb0509	3.6e-118	431.0	Lactobacillaceae	ybhL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K06890					ko00000				Bacteria	1V779@1239,3F3QH@33958,4HIX1@91061,COG0670@1,COG0670@2	NA|NA|NA	S	Belongs to the BI1 family
PAPOILPD_00213	390333.Ldb0508	3.4e-214	750.7	Lactobacillaceae	mdtG	GO:0006810,GO:0006855,GO:0008150,GO:0015893,GO:0042221,GO:0042493,GO:0050896,GO:0051179,GO:0051234,GO:0055085		ko:K08161					ko00000,ko02000	2.A.1.2.20			Bacteria	1TRDJ@1239,3FCA7@33958,4H9UE@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00214	390333.Ldb0507	1.1e-54	219.2	Lactobacillaceae													Bacteria	1U8GK@1239,29QQJ@1,30BQC@2,3FAYP@33958,4IIEF@91061	NA|NA|NA		
PAPOILPD_00215	353496.LBU_0414	6e-307	1059.3	Lactobacillaceae	ybiT	GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0050896		ko:K06158					ko00000,ko03012				Bacteria	1TPW0@1239,3F3ZJ@33958,4HATH@91061,COG0488@1,COG0488@2	NA|NA|NA	S	ABC transporter, ATP-binding protein
PAPOILPD_00216	390333.Ldb0501	0.0	1745.3	Lactobacillaceae	ppc	GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0008964,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704,GO:0072350	4.1.1.31	ko:K01595	ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200	M00168,M00170,M00171,M00172,M00173,M00346,M00374	R00345	RC02741	ko00000,ko00001,ko00002,ko01000			iJN678.ppc,iSFV_1184.SFV_4025	Bacteria	1TQB6@1239,3F4BB@33958,4HCAF@91061,COG2352@1,COG2352@2	NA|NA|NA	H	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
PAPOILPD_00217	390333.Ldb0494	0.0	1152.9	Lactobacillaceae	glmS	GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016020,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.6.1.16	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931		R00768	RC00010,RC00163,RC02752	ko00000,ko00001,ko01000,ko01002			iNJ661.Rv3436c,iSB619.SA_RS11245,iYO844.BSU01780	Bacteria	1TPGU@1239,3F467@33958,4H9R4@91061,COG0449@1,COG0449@2	NA|NA|NA	M	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
PAPOILPD_00218	353496.LBU_0407	1.3e-82	312.4	Lactobacillaceae				ko:K03719					ko00000,ko03000,ko03036				Bacteria	1V3MI@1239,3F6FN@33958,4HJUY@91061,COG1522@1,COG1522@2	NA|NA|NA	K	AsnC family
PAPOILPD_00219	390333.Ldb0492	3.8e-52	210.7	Bacilli	ypaA			ko:K08987					ko00000				Bacteria	1VAEU@1239,4HM1I@91061,COG3759@1,COG3759@2	NA|NA|NA	S	membrane
PAPOILPD_00220	390333.Ldb0492	1.9e-29	134.8	Bacilli	ypaA			ko:K08987					ko00000				Bacteria	1VAEU@1239,4HM1I@91061,COG3759@1,COG3759@2	NA|NA|NA	S	membrane
PAPOILPD_00221	1293597.BN147_03760	1.6e-52	212.6	Lactobacillaceae	maa		2.3.1.18,2.3.1.79	ko:K00633,ko:K00661					ko00000,ko01000				Bacteria	1V56K@1239,3F54I@33958,4HTPS@91061,COG0110@1,COG0110@2	NA|NA|NA	S	Maltose acetyltransferase
PAPOILPD_00222	1293597.BN147_08530	3.7e-246	857.1	Lactobacillaceae													Bacteria	1TPT3@1239,3F882@33958,4HFAW@91061,COG1403@1,COG1403@2	NA|NA|NA	V	RRXRR protein
PAPOILPD_00223	1293597.BN147_03755	3.5e-128	464.9	Bacilli	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	1TS8B@1239,4ISKA@91061,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
PAPOILPD_00224	390333.Ldb0485	4.5e-91	340.5	Lactobacillaceae	nudC		1.3.7.1,3.6.1.22	ko:K03426,ko:K20449	ko00760,ko01100,ko01120,ko04146,map00760,map01100,map01120,map04146		R00103,R03004,R03164,R11104	RC00002,RC02422	ko00000,ko00001,ko01000				Bacteria	1V6WC@1239,3F7M6@33958,4HPP3@91061,COG2816@1,COG2816@2	NA|NA|NA	L	NUDIX domain
PAPOILPD_00225	390333.Ldb0484	5.4e-116	423.7	Lactobacillaceae	alkD												Bacteria	1V4WB@1239,3F4B1@33958,4HFXG@91061,COG4912@1,COG4912@2	NA|NA|NA	L	DNA alkylation repair enzyme
PAPOILPD_00226	390333.Ldb0483	4.3e-234	817.0	Lactobacillaceae	brnQ	GO:0003333,GO:0003674,GO:0005215,GO:0005304,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015188,GO:0015190,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015803,GO:0015804,GO:0015807,GO:0015818,GO:0015820,GO:0015829,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0034220,GO:0042221,GO:0042493,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903785,GO:1903825,GO:1905039		ko:K03311					ko00000	2.A.26			Bacteria	1TQIS@1239,3F3KC@33958,4HAKA@91061,COG1114@1,COG1114@2	NA|NA|NA	U	Component of the transport system for branched-chain amino acids
PAPOILPD_00227	387344.LVIS_0867	5.7e-55	220.3	Lactobacillaceae	akr5f		1.1.1.346	ko:K06221			R08878	RC00089	ko00000,ko01000				Bacteria	1TPM1@1239,3FB4Q@33958,4H9XJ@91061,COG0656@1,COG0656@2	NA|NA|NA	S	reductase
PAPOILPD_00228	353496.LBU_1021	1.4e-223	781.9	Lactobacillaceae	isp2												Bacteria	1TQ93@1239,3FB40@33958,4HC0Q@91061,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_00229	353496.LBU_1749	2.4e-242	844.3	Lactobacillaceae	dltD			ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	M00725			ko00000,ko00001,ko00002,ko01504				Bacteria	1TSZU@1239,3F3WE@33958,4HC3H@91061,COG3966@1,COG3966@2	NA|NA|NA	M	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
PAPOILPD_00230	353496.LBU_1750	5.7e-36	156.4	Lactobacillaceae	dltC	GO:0000270,GO:0003674,GO:0005215,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0006810,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0022857,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0051179,GO:0051234,GO:0055085,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	6.1.1.13	ko:K02078,ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	M00725	R02718	RC00037,RC00094	ko00000,ko00001,ko00002,ko01000,ko01504				Bacteria	1VFQI@1239,3F7Q1@33958,4HNIH@91061,COG0236@1,COG0236@2	NA|NA|NA	J	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAPOILPD_00231	353496.LBU_1751	2.8e-235	820.8	Lactobacillaceae	dltB			ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	M00725			ko00000,ko00001,ko00002,ko01504				Bacteria	1TP52@1239,3F4KK@33958,4HBQG@91061,COG1696@1,COG1696@2	NA|NA|NA	M	MBOAT, membrane-bound O-acyltransferase family
PAPOILPD_00232	353496.LBU_1752	1.5e-291	1008.1	Lactobacillaceae	dltA		6.1.1.13	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	M00725	R02718	RC00037,RC00094	ko00000,ko00001,ko00002,ko01000,ko01504				Bacteria	1TPTH@1239,3F49R@33958,4HAHU@91061,COG1020@1,COG1020@2	NA|NA|NA	H	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAPOILPD_00234	353496.LBU_1754	1.2e-46	192.2	Lactobacillaceae													Bacteria	1U67F@1239,29P6X@1,30A50@2,3F78Y@33958,4IFXY@91061	NA|NA|NA		
PAPOILPD_00235	353496.LBU_0597	6.8e-113	413.3	Lactobacillaceae	upp	GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.2.9	ko:K00761	ko00240,ko01100,map00240,map01100		R00966	RC00063	ko00000,ko00001,ko01000			iSB619.SA_RS11010	Bacteria	1TPMT@1239,3F4M0@33958,4H9Y0@91061,COG0035@1,COG0035@2	NA|NA|NA	F	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PAPOILPD_00236	353496.LBU_0598	4.2e-127	460.7	Lactobacillaceae	atpB	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600		ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194,ko03110	3.A.2.1		iAPECO1_1312.APECO1_2725,iE2348C_1286.E2348C_4048,iEC042_1314.EC042_4125,iECABU_c1320.ECABU_c42230,iECED1_1282.ECED1_4428,iECIAI39_1322.ECIAI39_4342,iECNA114_1301.ECNA114_3887,iECOK1_1307.ECOK1_4187,iECP_1309.ECP_3937,iECS88_1305.ECS88_4160,iECSF_1327.ECSF_3586,iECUMN_1333.ECUMN_4268,iEcSMS35_1347.EcSMS35_4106,iLF82_1304.LF82_0192,iNRG857_1313.NRG857_18615,iUMN146_1321.UM146_18880,iUMNK88_1353.UMNK88_4550,iUTI89_1310.UTI89_C4293,ic_1306.c4666	Bacteria	1TQIT@1239,3F3RE@33958,4H9NV@91061,COG0356@1,COG0356@2	NA|NA|NA	C	it plays a direct role in the translocation of protons across the membrane
PAPOILPD_00237	353496.LBU_0599	2e-27	127.9	Lactobacillaceae	atpE	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600		ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1			Bacteria	1VEHP@1239,3F82A@33958,4HNKQ@91061,COG0636@1,COG0636@2	NA|NA|NA	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PAPOILPD_00238	353496.LBU_0600	9.8e-54	216.5	Lactobacillaceae	atpF			ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1		iHN637.CLJU_RS01170,iYO844.BSU36850	Bacteria	1VB85@1239,3F5M8@33958,4HM64@91061,COG0711@1,COG0711@2	NA|NA|NA	C	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PAPOILPD_00239	353496.LBU_0601	9.7e-92	342.8	Lactobacillaceae	atpH	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944		ko:K02109,ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1			Bacteria	1VAG3@1239,3F5TZ@33958,4HKFW@91061,COG0712@1,COG0712@2	NA|NA|NA	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PAPOILPD_00240	390333.Ldb0709	2e-275	954.5	Lactobacillaceae	atpA	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600	3.6.3.14	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1		iIT341.HP1134,iSB619.SA_RS10975,iSbBS512_1146.SbBS512_E4187	Bacteria	1TNZ8@1239,3F3R4@33958,4HAMZ@91061,COG0056@1,COG0056@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PAPOILPD_00241	390333.Ldb0710	2.7e-169	601.3	Lactobacillaceae	atpG	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1		iLJ478.TM1611,iSB619.SA_RS10970,iYO844.BSU36820	Bacteria	1TPBX@1239,3F40E@33958,4HB0E@91061,COG0224@1,COG0224@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PAPOILPD_00242	353496.LBU_0604	9e-246	855.9	Lactobacillaceae	atpD		3.6.3.14	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1		iSB619.SA_RS10965	Bacteria	1TPGF@1239,3F3TF@33958,4HAT6@91061,COG0055@1,COG0055@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PAPOILPD_00243	353496.LBU_0605	5e-70	270.4	Lactobacillaceae	atpC	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600		ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1		iJN746.PP_5412,iSbBS512_1146.SbBS512_E4190	Bacteria	1VA89@1239,3F6I6@33958,4HKHS@91061,COG0355@1,COG0355@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane
PAPOILPD_00244	353496.LBU_0606	3.9e-32	143.7	Lactobacillaceae	ywzB												Bacteria	1U2FQ@1239,3F831@33958,4HNZX@91061,COG4836@1,COG4836@2	NA|NA|NA	S	Protein of unknown function (DUF1146)
PAPOILPD_00245	353496.LBU_0607	1.9e-170	605.1	Lactobacillaceae	mbl			ko:K03569					ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1			Bacteria	1TP51@1239,3F463@33958,4HA4S@91061,COG1077@1,COG1077@2	NA|NA|NA	D	Cell shape determining protein MreB Mrl
PAPOILPD_00246	353496.LBU_0608	1.4e-46	191.8	Lactobacillaceae	yidD			ko:K08998					ko00000				Bacteria	1VEIG@1239,3F7H1@33958,4HPA3@91061,COG0759@1,COG0759@2	NA|NA|NA	S	Could be involved in insertion of integral membrane proteins into the membrane
PAPOILPD_00247	353496.LBU_0609	1.7e-34	151.4	Lactobacillaceae													Bacteria	1U6BQ@1239,29FEW@1,302CK@2,3F7J3@33958,4IG3B@91061	NA|NA|NA	S	Protein of unknown function (DUF2969)
PAPOILPD_00248	353496.LBU_0610	3e-218	764.2	Lactobacillaceae	rodA			ko:K05837					ko00000,ko03036				Bacteria	1TPGH@1239,3F4J4@33958,4HAV4@91061,COG0772@1,COG0772@2	NA|NA|NA	D	Belongs to the SEDS family
PAPOILPD_00249	390333.Ldb0718	2.3e-78	298.1	Lactobacillaceae	usp6			ko:K03499,ko:K06149					ko00000,ko02000	2.A.38.1,2.A.38.4			Bacteria	1V3NY@1239,3F68T@33958,4HIP3@91061,COG0589@1,COG0589@2	NA|NA|NA	T	universal stress protein
PAPOILPD_00250	353496.LBU_0612	1.3e-42	178.7	Lactobacillaceae													Bacteria	1U6AF@1239,29P9A@1,30A7E@2,3F7FU@33958,4IG1T@91061	NA|NA|NA		
PAPOILPD_00251	353496.LBU_0613	8.7e-240	835.9	Lactobacillaceae	rarA			ko:K07478					ko00000				Bacteria	1TPVV@1239,3F3WF@33958,4HAIS@91061,COG2256@1,COG2256@2	NA|NA|NA	L	recombination factor protein RarA
PAPOILPD_00252	353496.LBU_0614	1.6e-79	302.0	Lactobacillaceae	yueI												Bacteria	1V8ID@1239,3FCEV@33958,4HJTQ@91061,COG5506@1,COG5506@2	NA|NA|NA	S	Protein of unknown function (DUF1694)
PAPOILPD_00253	353496.LBU_0615	5.4e-107	393.7	Lactobacillaceae	rpsD	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112		ko:K02986	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TR0J@1239,3F3P0@33958,4HAC9@91061,COG0522@1,COG0522@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PAPOILPD_00254	353496.LBU_0616	1.6e-297	1028.1	Lactobacillaceae	ezrA	GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0000918,GO:0000921,GO:0005575,GO:0005623,GO:0005886,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0022607,GO:0031106,GO:0032185,GO:0032506,GO:0034622,GO:0043933,GO:0044085,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051301,GO:0051302,GO:0051781,GO:0061640,GO:0065003,GO:0065007,GO:0070925,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047		ko:K06286,ko:K07158					ko00000,ko03036				Bacteria	1TQR7@1239,3F47K@33958,4HA15@91061,COG4477@1,COG4477@2	NA|NA|NA	D	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
PAPOILPD_00255	353496.LBU_0617	1.3e-215	755.4	Lactobacillaceae	iscS2		2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122		R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029				Bacteria	1TP21@1239,3F4CD@33958,4HAEE@91061,COG1104@1,COG1104@2	NA|NA|NA	E	Aminotransferase class V
PAPOILPD_00256	353496.LBU_0618	4.6e-227	793.5	Lactobacillaceae	thiI	GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	2.8.1.4	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122		R07461		ko00000,ko00001,ko01000,ko03016			iECNA114_1301.ECNA114_0400,iECO26_1355.ECO26_0455,iECSF_1327.ECSF_0383,iSDY_1059.SDY_0307	Bacteria	1TPNW@1239,3F3N0@33958,4HAV9@91061,COG0301@1,COG0301@2	NA|NA|NA	H	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PAPOILPD_00257	353496.LBU_0619	1.4e-125	455.7	Lactobacillaceae	rsuA	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.19,5.4.99.22	ko:K06178,ko:K06183					ko00000,ko01000,ko03009				Bacteria	1TQZ2@1239,3F41G@33958,4H9VU@91061,COG1187@1,COG1187@2	NA|NA|NA	J	Belongs to the pseudouridine synthase RsuA family
PAPOILPD_00258	353496.LBU_0620	0.0	1804.3	Lactobacillaceae	valS	GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.9	ko:K01873	ko00970,map00970	M00359,M00360	R03665	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iLJ478.TM1817	Bacteria	1TPN4@1239,3F3RB@33958,4HB85@91061,COG0525@1,COG0525@2	NA|NA|NA	J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
PAPOILPD_00259	390333.Ldb0728	2.5e-231	807.7	Lactobacillaceae	folC		6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000			iLJ478.TM0166	Bacteria	1TPX5@1239,3F498@33958,4HBJM@91061,COG0285@1,COG0285@2	NA|NA|NA	H	Belongs to the folylpolyglutamate synthase family
PAPOILPD_00260	353496.LBU_0622	8.9e-127	459.5	Lactobacillaceae													Bacteria	1V1N8@1239,3F56K@33958,4HG58@91061,COG0637@1,COG0637@2	NA|NA|NA	S	Haloacid dehalogenase-like hydrolase
PAPOILPD_00261	353496.LBU_0623	5.1e-113	413.7	Lactobacillaceae	radC			ko:K03630					ko00000				Bacteria	1TQ3K@1239,3F5IM@33958,4HB1W@91061,COG2003@1,COG2003@2	NA|NA|NA	L	DNA repair protein
PAPOILPD_00262	353496.LBU_0624	4.4e-175	620.5	Lactobacillaceae	mreB			ko:K03569					ko00000,ko02048,ko03036,ko04812	1.A.33.1,9.B.157.1			Bacteria	1TP51@1239,3F3ZV@33958,4HA4S@91061,COG1077@1,COG1077@2	NA|NA|NA	D	cell shape determining protein MreB
PAPOILPD_00263	390333.Ldb0732	4.2e-134	484.2	Lactobacillaceae	mreC	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007163,GO:0008150,GO:0008360,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0030428,GO:0031224,GO:0031226,GO:0042546,GO:0043621,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071554,GO:0071840,GO:0071944,GO:0071963		ko:K03570					ko00000,ko03036	9.B.157.1			Bacteria	1TR1V@1239,3F3MC@33958,4HB0K@91061,COG1792@1,COG1792@2	NA|NA|NA	M	Involved in formation and maintenance of cell shape
PAPOILPD_00264	390333.Ldb0733	7.1e-95	353.2	Lactobacillaceae	mreD			ko:K03571					ko00000,ko03036	9.B.157.1			Bacteria	1U5E6@1239,29NQT@1,309NS@2,3F5PM@33958,4IF5G@91061	NA|NA|NA		
PAPOILPD_00266	390333.Ldb0734	1.3e-54	218.8	Lactobacillaceae													Bacteria	1U6DY@1239,2A5PG@1,30UEB@2,3F7PE@33958,4IG5S@91061	NA|NA|NA	S	Protein of unknown function (DUF3397)
PAPOILPD_00267	353496.LBU_0628	9.1e-77	292.7	Lactobacillaceae	mraZ	GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141		ko:K03925					ko00000				Bacteria	1V3JD@1239,3F6K3@33958,4HH23@91061,COG2001@1,COG2001@2	NA|NA|NA	K	Belongs to the MraZ family
PAPOILPD_00268	353496.LBU_0629	1.3e-168	599.0	Lactobacillaceae	rsmH	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.199	ko:K03438					ko00000,ko01000,ko03009				Bacteria	1TNZV@1239,3F3MF@33958,4H9U2@91061,COG0275@1,COG0275@2	NA|NA|NA	J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
PAPOILPD_00269	353496.LBU_0630	1.4e-51	208.8	Lactobacillaceae	ftsL												Bacteria	1VCE5@1239,3F6KG@33958,4HM4W@91061,COG4839@1,COG4839@2	NA|NA|NA	D	Cell division protein FtsL
PAPOILPD_00270	390333.Ldb0738	0.0	1345.9	Lactobacillaceae	ftsI	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681	3.4.16.4	ko:K03587,ko:K08384,ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501				ko00000,ko00001,ko01000,ko01011,ko03036			iSSON_1240.SSON_0092	Bacteria	1TP93@1239,3F47N@33958,4H9VQ@91061,COG0768@1,COG0768@2	NA|NA|NA	M	Penicillin-binding Protein
PAPOILPD_00271	353496.LBU_0632	2.6e-172	611.3	Lactobacillaceae	mraY	GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502		R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146		iAF987.Gmet_0409,iEC042_1314.EC042_0088,iECABU_c1320.ECABU_c00920,iECED1_1282.ECED1_0088,iECH74115_1262.ECH74115_0095,iECSP_1301.ECSP_0090,iECs_1301.ECs0091,iG2583_1286.G2583_0091,iSDY_1059.SDY_0117,iZ_1308.Z0097,ic_1306.c0105	Bacteria	1TP8W@1239,3F3YP@33958,4H9TP@91061,COG0472@1,COG0472@2	NA|NA|NA	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PAPOILPD_00272	353496.LBU_0633	1.4e-259	901.7	Lactobacillaceae	murD		6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100		R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	1TQ3P@1239,3F49W@33958,4HA5P@91061,COG0771@1,COG0771@2	NA|NA|NA	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PAPOILPD_00273	353496.LBU_0634	1.3e-204	718.8	Lactobacillaceae	murG	GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0050511,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	2.4.1.227,6.3.2.8	ko:K01924,ko:K02563	ko00471,ko00550,ko01100,ko01502,ko04112,map00471,map00550,map01100,map01502,map04112		R03193,R05032,R05662	RC00005,RC00049,RC00064,RC00141	ko00000,ko00001,ko01000,ko01011		GT28	iLJ478.TM0232,iSFV_1184.SFV_0083,iSF_1195.SF0087,iSFxv_1172.SFxv_0091,iS_1188.S0089	Bacteria	1TQFT@1239,3F4FW@33958,4HBAQ@91061,COG0707@1,COG0707@2	NA|NA|NA	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PAPOILPD_00274	353496.LBU_0635	6.2e-146	523.5	Lactobacillaceae	divIB			ko:K03589	ko04112,map04112				ko00000,ko00001,ko03036				Bacteria	1V6V5@1239,3F406@33958,4HDFD@91061,COG1589@1,COG1589@2	NA|NA|NA	D	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
PAPOILPD_00275	353496.LBU_0636	4.4e-234	817.0	Lactobacillaceae	ftsA	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032153,GO:0044425,GO:0044459,GO:0044464,GO:0051301,GO:0071944,GO:0098552,GO:0098562		ko:K03590	ko04112,map04112				ko00000,ko00001,ko03036,ko04812				Bacteria	1TP1Z@1239,3F413@33958,4H9NF@91061,COG0849@1,COG0849@2	NA|NA|NA	D	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
PAPOILPD_00276	353496.LBU_0637	5.2e-211	740.3	Lactobacillaceae	ftsZ	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0030428,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363		ko:K03531	ko04112,map04112				ko00000,ko00001,ko02048,ko03036,ko04812				Bacteria	1TP6W@1239,3F4V1@33958,4H9WZ@91061,COG0206@1,COG0206@2	NA|NA|NA	D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PAPOILPD_00277	353496.LBU_0638	1.8e-64	251.9	Lactobacillaceae	sepF	GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0022607,GO:0032506,GO:0042802,GO:0044085,GO:0044464,GO:0051301,GO:0071840,GO:0071944,GO:0090529		ko:K09772					ko00000,ko03036				Bacteria	1VER3@1239,3F7MQ@33958,4HKIC@91061,COG1799@1,COG1799@2	NA|NA|NA	D	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
PAPOILPD_00278	353496.LBU_0639	2.9e-45	187.6	Lactobacillaceae	yggT	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K02221					ko00000,ko02044				Bacteria	1U6JG@1239,3F818@33958,4IGBY@91061,COG0762@1,COG0762@2	NA|NA|NA	S	YGGT family
PAPOILPD_00279	353496.LBU_0640	1.8e-142	511.9	Lactobacillaceae	ylmH			ko:K02487,ko:K06596	ko02020,ko02025,map02020,map02025	M00507			ko00000,ko00001,ko00002,ko01001,ko02022,ko02035				Bacteria	1U5V2@1239,3F48W@33958,4HD3F@91061,COG2302@1,COG2302@2	NA|NA|NA	S	S4 domain protein
PAPOILPD_00280	353496.LBU_0641	0.0	1912.1	Lactobacillaceae	ileS	GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.5	ko:K01870	ko00970,map00970	M00359,M00360	R03656	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iG2583_1286.G2583_0027,iPC815.YPO0475	Bacteria	1TPS7@1239,3F3X4@33958,4HAWB@91061,COG0060@1,COG0060@2	NA|NA|NA	J	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PAPOILPD_00281	353496.LBU_0642	5.7e-32	142.9	Lactobacillaceae	cspA			ko:K03704					ko00000,ko03000				Bacteria	1U6DB@1239,3F7NC@33958,4IG52@91061,COG1278@1,COG1278@2	NA|NA|NA	K	'Cold-shock' DNA-binding domain
PAPOILPD_00282	353496.LBU_0643	2.8e-102	377.9	Lactobacillaceae	nudF		3.6.1.13	ko:K01515	ko00230,map00230		R01054	RC00002	ko00000,ko00001,ko01000			iHN637.CLJU_RS05505,iSB619.SA_RS07540,iYO844.BSU23610	Bacteria	1V6F5@1239,3F53J@33958,4HII9@91061,COG0494@1,COG0494@2	NA|NA|NA	L	ADP-ribose pyrophosphatase
PAPOILPD_00283	353496.LBU_0644	8.6e-15	85.9	Lactobacillaceae													Bacteria	1U8BR@1239,29QMW@1,30BMH@2,3FAT7@33958,4II9Q@91061	NA|NA|NA		
PAPOILPD_00284	353496.LBU_0645	3.1e-127	461.1	Lactobacillaceae	mtnN		3.2.2.9	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	M00034,M00609	R00194,R01401	RC00063,RC00318	ko00000,ko00001,ko00002,ko01000				Bacteria	1U7WK@1239,3F4HE@33958,4HB8K@91061,COG0775@1,COG0775@2	NA|NA|NA	E	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PAPOILPD_00285	353496.LBU_0646	1.4e-212	745.3	Lactobacillaceae	iscS		2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122		R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029				Bacteria	1TP21@1239,3F3RF@33958,4HA6H@91061,COG1104@1,COG1104@2	NA|NA|NA	E	Aminotransferase class V
PAPOILPD_00286	353496.LBU_0647	1.2e-55	222.2	Lactobacillaceae	XK27_04120												Bacteria	1VDSF@1239,2DHWG@1,32U9W@2,3F7E3@33958,4HP9N@91061	NA|NA|NA	S	Putative amino acid metabolism
PAPOILPD_00287	390333.Ldb0755	2.7e-221	774.2	Lactobacillaceae	mnmA	GO:0001510,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004808,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016782,GO:0016783,GO:0030488,GO:0032259,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.8.1.13	ko:K00566	ko04122,map04122		R08700	RC02313,RC02315	ko00000,ko00001,ko01000,ko03016				Bacteria	1TPIZ@1239,3F4N5@33958,4HBJ6@91061,COG0482@1,COG0482@2	NA|NA|NA	J	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
PAPOILPD_00288	353496.LBU_0649	7.5e-123	446.4	Lactobacillaceae	pgm6		5.4.2.11,5.4.2.12	ko:K01834,ko:K15634	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147				Bacteria	1V7EZ@1239,3FBD9@33958,4HJCK@91061,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
PAPOILPD_00289	353496.LBU_0650	5e-103	380.6	Lactobacillaceae													Bacteria	1VFGR@1239,3F4MD@33958,4IBSH@91061,COG0457@1,COG0457@2	NA|NA|NA	S	Repeat protein
PAPOILPD_00290	353496.LBU_0651	0.0	1511.5	Lactobacillaceae	recD2		3.1.11.5	ko:K03581	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPZH@1239,3F44X@33958,4HATQ@91061,COG0507@1,COG0507@2	NA|NA|NA	L	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
PAPOILPD_00291	390333.Ldb0759	7.6e-247	859.4	Lactobacillaceae	merA	GO:0000302,GO:0000305,GO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016491,GO:0016667,GO:0019725,GO:0042221,GO:0042592,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1901530,GO:1901700,GO:1990748	1.16.1.1,1.8.1.7	ko:K00383,ko:K00520,ko:K21739	ko00480,ko04918,map00480,map04918		R00094,R00115	RC00011	ko00000,ko00001,ko01000				Bacteria	1TP1W@1239,3FC6T@33958,4HBZF@91061,COG1249@1,COG1249@2	NA|NA|NA	C	Pyridine nucleotide-disulfide oxidoreductase
PAPOILPD_00292	748671.LCRIS_00503	4e-217	760.8	Lactobacillaceae	gtfA	GO:0003674,GO:0003824,GO:0004645,GO:0009018,GO:0016740,GO:0016757,GO:0016758	2.4.1.7	ko:K00690	ko00500,map00500		R00803	RC00028	ko00000,ko00001,ko01000		GH13		Bacteria	1TR93@1239,3F3YR@33958,4HEKC@91061,COG0366@1,COG0366@2	NA|NA|NA	G	Sucrose glucosyltransferase
PAPOILPD_00293	1423758.BN55_07020	5.3e-58	231.5	Lactobacillaceae	scrR			ko:K02529,ko:K03484					ko00000,ko03000				Bacteria	1UVZE@1239,3F6DT@33958,4I2X3@91061,COG1609@1,COG1609@2	NA|NA|NA	K	Periplasmic binding protein domain
PAPOILPD_00294	353496.LBU_0041	3e-133	481.1	Lactobacillaceae	glpF			ko:K02440					ko00000,ko02000	1.A.8.1,1.A.8.2			Bacteria	1TP4T@1239,3F42H@33958,4HAWP@91061,COG0580@1,COG0580@2	NA|NA|NA	U	Belongs to the MIP aquaporin (TC 1.A.8) family
PAPOILPD_00295	748671.LCRIS_00547	1.1e-155	556.6	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TQAH@1239,3FBNH@33958,4IRBD@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Probable transposase
PAPOILPD_00296	272626.lin0677	2.2e-29	136.0	Listeriaceae													Bacteria	1UITK@1239,26M0Y@186820,4ISSJ@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NLP P60 protein
PAPOILPD_00298	272621.LBA1403	4.7e-08	62.8	Lactobacillaceae	yefM		2.3.1.15	ko:K08591,ko:K19158,ko:K19159	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004,ko02048				Bacteria	1U6CD@1239,3F7KJ@33958,4IG41@91061,COG2161@1,COG2161@2	NA|NA|NA	D	Antitoxin component of a toxin-antitoxin (TA) module
PAPOILPD_00299	353496.LBU_1644	1.1e-83	315.8	Lactobacillaceae													Bacteria	1V6P0@1239,3F63I@33958,4HJ1Y@91061,COG3610@1,COG3610@2	NA|NA|NA	S	Threonine/Serine exporter, ThrE
PAPOILPD_00300	353496.LBU_1645	4.2e-133	480.7	Lactobacillaceae	thrE												Bacteria	1TSE8@1239,3F4XE@33958,4HBW1@91061,COG2966@1,COG2966@2	NA|NA|NA	S	Putative threonine/serine exporter
PAPOILPD_00301	353496.LBU_1646	3.1e-292	1010.4	Lactobacillaceae				ko:K06158					ko00000,ko03012				Bacteria	1TPAX@1239,3F3QI@33958,4HBVV@91061,COG0488@1,COG0488@2	NA|NA|NA	S	ABC transporter, ATP-binding protein
PAPOILPD_00302	748671.LCRIS_01784	7.9e-16	90.1	Lactobacillaceae													Bacteria	1U5V0@1239,29NYN@1,309WR@2,3F6IV@33958,4IFIN@91061	NA|NA|NA		
PAPOILPD_00303	353496.LBU_1648	5.7e-203	713.4	Lactobacillaceae	brpA												Bacteria	1TR1B@1239,3F3MQ@33958,4HA09@91061,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-like function transcriptional attenuator common domain protein
PAPOILPD_00304	390333.Ldb2033	2.2e-243	847.8	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TRNY@1239,3F431@33958,4HBKP@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_00305	353496.LBU_1650	0.0	1182.5	Lactobacillaceae	pepF	GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564		ko:K08602					ko00000,ko01000,ko01002				Bacteria	1TP4P@1239,3F4E5@33958,4HA7X@91061,COG1164@1,COG1164@2	NA|NA|NA	E	oligoendopeptidase F
PAPOILPD_00306	1293597.BN147_10000	2.8e-224	784.3	Lactobacillaceae	lctO			ko:K10530					ko00000,ko01000				Bacteria	1TPC4@1239,3F3N3@33958,4HAU5@91061,COG1304@1,COG1304@2	NA|NA|NA	C	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
PAPOILPD_00307	1293597.BN147_10005	2e-203	715.3	Lactobacillaceae	lctP	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03303					ko00000,ko02000	2.A.14			Bacteria	1TQNM@1239,3F4EG@33958,4HAF3@91061,COG1620@1,COG1620@2	NA|NA|NA	C	L-lactate permease
PAPOILPD_00308	97137.C821_01961	7.8e-09	67.0	Lactobacillaceae													Bacteria	1V6D3@1239,3F4ZG@33958,4IPQE@91061,COG4640@1,COG4640@2	NA|NA|NA	S	response to antibiotic
PAPOILPD_00309	353496.LBU_1654	8e-135	486.5	Lactobacillaceae	znuB			ko:K02075,ko:K09816	ko02010,map02010	M00242,M00244			ko00000,ko00001,ko00002,ko02000	3.A.1.15,3.A.1.15.3,3.A.1.15.5			Bacteria	1V0SX@1239,3F4BC@33958,4HE09@91061,COG1108@1,COG1108@2	NA|NA|NA	U	ABC 3 transport family
PAPOILPD_00310	353496.LBU_1655	6.6e-119	433.3	Lactobacillaceae	fhuC			ko:K02074,ko:K09817	ko02010,map02010	M00242,M00244			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.15,3.A.1.15.3,3.A.1.15.5			Bacteria	1TQ68@1239,3F49M@33958,4HAZI@91061,COG1121@1,COG1121@2	NA|NA|NA	P	ABC transporter
PAPOILPD_00311	353496.LBU_1656	5.2e-63	246.9	Lactobacillaceae			3.1.3.102,3.1.3.104,3.1.3.23	ko:K07757,ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00548,R00804,R07280	RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1UYU8@1239,3F3ZW@33958,4HE0K@91061,COG0561@1,COG0561@2	NA|NA|NA	G	Sucrose-6F-phosphate phosphohydrolase
PAPOILPD_00312	353496.LBU_1656	1.1e-68	265.8	Lactobacillaceae			3.1.3.102,3.1.3.104,3.1.3.23	ko:K07757,ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00548,R00804,R07280	RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1UYU8@1239,3F3ZW@33958,4HE0K@91061,COG0561@1,COG0561@2	NA|NA|NA	G	Sucrose-6F-phosphate phosphohydrolase
PAPOILPD_00313	353496.LBU_1657	3.9e-285	986.9	Lactobacillaceae	fruA		2.7.1.202,2.7.1.204	ko:K02768,ko:K02769,ko:K02770,ko:K02806,ko:K20112	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	M00273,M00807	R03232,R11171	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.2.1,4.A.5			Bacteria	1TPKU@1239,3F44C@33958,4H9KR@91061,COG1299@1,COG1299@2,COG1445@1,COG1445@2,COG1762@1,COG1762@2	NA|NA|NA	GT	Phosphotransferase System
PAPOILPD_00314	353496.LBU_1657	1e-41	175.6	Lactobacillaceae	fruA		2.7.1.202,2.7.1.204	ko:K02768,ko:K02769,ko:K02770,ko:K02806,ko:K20112	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	M00273,M00807	R03232,R11171	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.2.1,4.A.5			Bacteria	1TPKU@1239,3F44C@33958,4H9KR@91061,COG1299@1,COG1299@2,COG1445@1,COG1445@2,COG1762@1,COG1762@2	NA|NA|NA	GT	Phosphotransferase System
PAPOILPD_00315	353496.LBU_1658	5.9e-166	590.1	Lactobacillaceae	pfkB		2.7.1.11,2.7.1.56	ko:K00882,ko:K16370	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00345	R00756,R02071,R03236,R03237,R03238,R03239,R04779	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQ36@1239,3F3SG@33958,4HANU@91061,COG1105@1,COG1105@2	NA|NA|NA	H	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
PAPOILPD_00316	390333.Ldb2042	1.2e-132	479.2	Lactobacillaceae	fruR			ko:K03436					ko00000,ko03000				Bacteria	1TSF8@1239,3F3JB@33958,4HDT9@91061,COG1349@1,COG1349@2	NA|NA|NA	K	DeoR C terminal sensor domain
PAPOILPD_00317	353496.LBU_1660	1.4e-144	518.8	Lactobacillaceae	racD		5.1.1.13	ko:K01779	ko00250,ko01054,map00250,map01054		R00491	RC00302	ko00000,ko00001,ko01000				Bacteria	1TQ6M@1239,3FCEP@33958,4HR12@91061,COG1794@1,COG1794@2	NA|NA|NA	M	Belongs to the aspartate glutamate racemases family
PAPOILPD_00318	353496.LBU_1661	1.3e-293	1015.0	Lactobacillaceae	murE		6.3.2.13,6.3.2.7	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100		R02786,R02788	RC00064,RC00090	ko00000,ko00001,ko01000,ko01011				Bacteria	1TPQE@1239,3F3UE@33958,4H9T1@91061,COG0769@1,COG0769@2	NA|NA|NA	M	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PAPOILPD_00319	353496.LBU_1662	1.3e-218	765.4	Lactobacillaceae	hpk31		2.7.13.3	ko:K07636	ko02020,map02020	M00434			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1TRZ0@1239,3FC2N@33958,4H9U1@91061,COG5002@1,COG5002@2	NA|NA|NA	T	His Kinase A (phospho-acceptor) domain
PAPOILPD_00320	1293597.BN147_03960	4.3e-121	440.7	Lactobacillaceae													Bacteria	1TP9M@1239,3F3Y0@33958,4HB3T@91061,COG0745@1,COG0745@2	NA|NA|NA	K	response regulator
PAPOILPD_00321	353496.LBU_1664	0.0	1153.7	Lactobacillaceae	ndvA			ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	1TP0B@1239,3F3PD@33958,4HA3S@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
PAPOILPD_00322	353496.LBU_1665	1.7e-299	1034.6	Lactobacillaceae				ko:K06147,ko:K06148,ko:K18891	ko02010,map02010	M00708			ko00000,ko00001,ko00002,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.135,3.A.1.21			Bacteria	1TP0B@1239,3F3SP@33958,4H9SC@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_00323	353496.LBU_1666	2.1e-116	425.2	Lactobacillaceae	XK27_01040												Bacteria	1VF5N@1239,3F4JS@33958,4HH7B@91061,COG4858@1,COG4858@2	NA|NA|NA	S	Protein of unknown function (DUF1129)
PAPOILPD_00324	353496.LBU_1667	2.3e-201	708.0	Lactobacillaceae	ychF	GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030234,GO:0043021,GO:0043022,GO:0043023,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0098772		ko:K06942					ko00000,ko03009				Bacteria	1TPRK@1239,3F3TK@33958,4H9SQ@91061,COG0012@1,COG0012@2	NA|NA|NA	J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
PAPOILPD_00325	353496.LBU_1668	9.6e-45	185.7	Lactobacillaceae	yyzM												Bacteria	1VEQ7@1239,3F823@33958,4HNHU@91061,COG4481@1,COG4481@2	NA|NA|NA	S	Bacterial protein of unknown function (DUF951)
PAPOILPD_00326	353496.LBU_1669	4.2e-153	547.4	Lactobacillaceae	spo0J	GO:0005575,GO:0005622,GO:0005623,GO:0007059,GO:0008150,GO:0009295,GO:0009987,GO:0022603,GO:0042173,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0043937,GO:0043938,GO:0044424,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0065007		ko:K03497					ko00000,ko03000,ko03036,ko04812				Bacteria	1TQ2B@1239,3F47R@33958,4H9TB@91061,COG1475@1,COG1475@2	NA|NA|NA	K	Belongs to the ParB family
PAPOILPD_00327	353496.LBU_1670	1.7e-137	495.4	Lactobacillaceae	soj			ko:K03496					ko00000,ko03036,ko04812				Bacteria	1TP8S@1239,3F4AE@33958,4HAYM@91061,COG1192@1,COG1192@2	NA|NA|NA	D	Sporulation initiation inhibitor
PAPOILPD_00328	390333.Ldb2055	1.3e-143	515.8	Lactobacillaceae	noc			ko:K03497					ko00000,ko03000,ko03036,ko04812				Bacteria	1TP0I@1239,3F4RU@33958,4HAC6@91061,COG1475@1,COG1475@2	NA|NA|NA	K	Belongs to the ParB family
PAPOILPD_00329	353496.LBU_1672	9.1e-130	469.5	Lactobacillaceae	rsmG	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.170	ko:K03501					ko00000,ko01000,ko03009,ko03036				Bacteria	1TPBT@1239,3F3ZX@33958,4HAAZ@91061,COG0357@1,COG0357@2	NA|NA|NA	J	Specifically methylates the N7 position of a guanine in 16S rRNA
PAPOILPD_00330	353496.LBU_1673	1.3e-85	322.4	Lactobacillaceae	cvpA	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009403,GO:0009404,GO:0009987,GO:0016020,GO:0019748,GO:0044237,GO:0044249,GO:0044464,GO:0044550,GO:0071944		ko:K03558					ko00000				Bacteria	1U58E@1239,3F552@33958,4IEZI@91061,COG1286@1,COG1286@2	NA|NA|NA	S	Colicin V production protein
PAPOILPD_00331	353496.LBU_1674	2e-185	654.8	Lactobacillaceae	apbE		2.7.1.180	ko:K03734					ko00000,ko01000				Bacteria	1TR9C@1239,3F3QR@33958,4HHVC@91061,COG1477@1,COG1477@2	NA|NA|NA	H	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
PAPOILPD_00332	390333.Ldb2059	1.9e-141	508.4	Lactobacillaceae			3.1.3.48	ko:K01104					ko00000,ko01000				Bacteria	1VA24@1239,3F4H4@33958,4IQXZ@91061,COG2365@1,COG2365@2	NA|NA|NA	T	Tyrosine phosphatase family
PAPOILPD_00333	353496.LBU_1676	1.6e-94	352.1	Lactobacillaceae	azr		1.5.1.36	ko:K22393,ko:K22394	ko00740,ko01100,map00740,map01100		R05705,R09748,R09750	RC00126	ko00000,ko00001,ko01000				Bacteria	1TT2S@1239,3F544@33958,4HBQI@91061,COG0431@1,COG0431@2	NA|NA|NA	S	NADPH-dependent FMN reductase
PAPOILPD_00334	353496.LBU_1677	3.5e-94	350.9	Lactobacillaceae	nqr		1.5.1.36	ko:K22393,ko:K22394	ko00740,ko01100,map00740,map01100		R05705,R09748,R09750	RC00126	ko00000,ko00001,ko01000				Bacteria	1VI8F@1239,3FCC2@33958,4HPT0@91061,COG0431@1,COG0431@2	NA|NA|NA	S	NADPH-dependent FMN reductase
PAPOILPD_00335	390333.Ldb2062	1.5e-97	362.1	Lactobacillaceae													Bacteria	1U9UE@1239,3F403@33958,4HM7U@91061,COG1309@1,COG1309@2	NA|NA|NA	K	WHG domain
PAPOILPD_00336	390333.Ldb2063	8.4e-273	945.7	Lactobacillaceae	pipD			ko:K08659					ko00000,ko01000,ko01002				Bacteria	1TQ0F@1239,3F3M4@33958,4HC3G@91061,COG4690@1,COG4690@2	NA|NA|NA	E	Dipeptidase
PAPOILPD_00337	1293597.BN147_07125	5.1e-17	94.4	Lactobacillaceae													Bacteria	1U89E@1239,2BRZJ@1,32KZY@2,3FAQJ@33958,4II7B@91061	NA|NA|NA		
PAPOILPD_00338	353496.LBU_1681	1.8e-116	425.2	Lactobacillaceae				ko:K01990,ko:K01992		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1V1P4@1239,3F65W@33958,4HDRD@91061,COG1131@1,COG1131@2	NA|NA|NA	V	AAA domain, putative AbiEii toxin, Type IV TA system
PAPOILPD_00339	353496.LBU_1682	6.5e-103	380.2	Lactobacillaceae													Bacteria	1U6YK@1239,2AFSW@1,315V0@2,3F8QJ@33958,4IGSS@91061	NA|NA|NA		
PAPOILPD_00341	353496.LBU_1684	4.6e-98	364.0	Lactobacillaceae													Bacteria	1TZIV@1239,2BFQS@1,329JG@2,3F8FT@33958,4IGKR@91061	NA|NA|NA		
PAPOILPD_00342	353496.LBU_1685	1.1e-86	325.9	Lactobacillaceae	pts23A			ko:K02777	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	M00265,M00266,M00268,M00270,M00272,M00303,M00806	R02738,R02780,R04111,R04394,R05132,R08559	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.1.1.1			Bacteria	1VAEB@1239,3F9P9@33958,4IHDS@91061,COG2190@1,COG2190@2	NA|NA|NA	G	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
PAPOILPD_00343	1423748.BALB01000004_gene572	7.7e-77	293.9	Lactobacillaceae				ko:K07707	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko02022				Bacteria	1V392@1239,3F6AD@33958,4HHAI@91061,COG3279@1,COG3279@2	NA|NA|NA	K	LytTr DNA-binding domain
PAPOILPD_00344	272621.LBA0602	8.2e-57	228.0	Lactobacillaceae			2.7.13.3	ko:K07706	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1V1ET@1239,3F71I@33958,4HGNA@91061,COG3290@1,COG3290@2	NA|NA|NA	T	GHKL domain
PAPOILPD_00346	1293597.BN147_10185	7.5e-82	309.7	Lactobacillaceae	tagD		2.7.7.15,2.7.7.39	ko:K00968,ko:K00980	ko00440,ko00564,ko01100,ko05231,map00440,map00564,map01100,map05231	M00090	R00856,R01890,R02590	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	1V3KY@1239,3F65R@33958,4HGWZ@91061,COG0615@1,COG0615@2	NA|NA|NA	IM	Glycerol-3-phosphate cytidylyltransferase
PAPOILPD_00347	1293597.BN147_10210	4.3e-71	273.9	Lactobacillaceae	mesH	GO:0000166,GO:0003674,GO:0003824,GO:0003870,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008883,GO:0009058,GO:0009987,GO:0016020,GO:0016410,GO:0016491,GO:0016620,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016749,GO:0016903,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0036094,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0046148,GO:0046483,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:0097159,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576											Bacteria	1VESW@1239,3F4GH@33958,4HNK7@91061,COG2246@1,COG2246@2	NA|NA|NA	S	Teichoic acid glycosylation protein
PAPOILPD_00348	353496.LBU_1576	5.1e-125	453.8	Lactobacillaceae													Bacteria	1U7HN@1239,29Q4Z@1,30B3V@2,3F9Q3@33958,4IHE9@91061	NA|NA|NA	S	VanZ like family
PAPOILPD_00349	1293597.BN147_10225	8.2e-205	719.9	Lactobacillaceae	sidC			ko:K07459,ko:K15482	ko05134,map05134				ko00000,ko00001				Bacteria	1U760@1239,3F9DW@33958,4IH0Q@91061,COG0497@1,COG0497@2,COG3593@1,COG3593@2	NA|NA|NA	L	DNA recombination
PAPOILPD_00350	353496.LBU_1571	1.2e-13	82.4	Bacteria			3.1.4.46,3.2.1.99	ko:K01126,ko:K06113	ko00564,map00564		R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000		GH43		Bacteria	COG0584@1,COG0584@2,COG5492@1,COG5492@2	NA|NA|NA	N	domain, Protein
PAPOILPD_00351	353496.LBU_1571	1.4e-251	875.2	Bacteria			3.1.4.46,3.2.1.99	ko:K01126,ko:K06113	ko00564,map00564		R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000		GH43		Bacteria	COG0584@1,COG0584@2,COG5492@1,COG5492@2	NA|NA|NA	N	domain, Protein
PAPOILPD_00353	353496.LBU_1570	4.8e-35	153.3	Firmicutes													Bacteria	1V4WS@1239,2A6DJ@1,30V6F@2	NA|NA|NA		
PAPOILPD_00354	1123298.KB904123_gene1958	6.3e-39	169.5	Bacteria													Bacteria	COG1196@1,COG1196@2	NA|NA|NA	D	nuclear chromosome segregation
PAPOILPD_00355	353496.LBU_1569	1.7e-133	481.9	Lactobacillaceae	glpQ1		3.1.4.46	ko:K01126	ko00564,map00564		R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000				Bacteria	1V3W4@1239,3F4E3@33958,4HFNQ@91061,COG0584@1,COG0584@2	NA|NA|NA	C	glycerophosphoryl diester phosphodiesterase
PAPOILPD_00356	353496.LBU_1568	8.8e-124	449.5	Lactobacillaceae	pgm3												Bacteria	1TQWQ@1239,3F524@33958,4HF2N@91061,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
PAPOILPD_00357	390333.Ldb1920	8.4e-114	416.4	Lactobacillaceae	XK27_08875												Bacteria	1VW9X@1239,3F60X@33958,4HWF8@91061,COG5549@1,COG5549@2	NA|NA|NA	O	PFAM peptidase M10A and M12B, matrixin and adamalysin
PAPOILPD_00358	390333.Ldb1919	0.0	1455.3	Lactobacillaceae	helD		3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	1TP39@1239,3F486@33958,4H9Y5@91061,COG3973@1,COG3973@2	NA|NA|NA	L	DNA helicase
PAPOILPD_00359	1293597.BN147_10250	1.8e-100	372.1	Lactobacillaceae	glnP			ko:K02029,ko:K02030,ko:K17073,ko:K17074	ko02010,map02010	M00236,M00589			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.20			Bacteria	1V280@1239,3F3VF@33958,4HGMH@91061,COG0765@1,COG0765@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00360	1293597.BN147_10255	2.1e-93	348.6	Lactobacillaceae	glnQ		3.6.3.21	ko:K02028		M00236			ko00000,ko00002,ko01000,ko02000	3.A.1.3			Bacteria	1UYAZ@1239,3F4GP@33958,4HE6M@91061,COG1126@1,COG1126@2	NA|NA|NA	E	ABC transporter
PAPOILPD_00361	353496.LBU_0262	4.1e-78	297.4	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TRNY@1239,3F431@33958,4HBKP@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_00362	353496.LBU_0262	5.2e-136	490.3	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TRNY@1239,3F431@33958,4HBKP@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_00363	1293597.BN147_10260	2.1e-122	445.3	Lactobacillaceae	aatB			ko:K02029,ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	1TQNR@1239,3F3WC@33958,4HF14@91061,COG0834@1,COG0834@2	NA|NA|NA	ET	ABC transporter substrate-binding protein
PAPOILPD_00364	1123299.AUKZ01000014_gene1653	2.8e-12	79.3	Firmicutes	liaI			ko:K11619	ko02020,map02020	M00754			ko00000,ko00001,ko00002				Bacteria	1V7WJ@1239,COG4758@1,COG4758@2	NA|NA|NA	S	membrane
PAPOILPD_00365	390333.Ldb1914	7e-72	276.6	Lactobacillaceae	XK27_02470												Bacteria	1VEPW@1239,3FBDY@33958,4HP5K@91061,COG3279@1,COG3279@2	NA|NA|NA	K	LytTr DNA-binding domain
PAPOILPD_00366	353496.LBU_1560	3.7e-102	377.5	Lactobacillaceae													Bacteria	1VB88@1239,3F5AR@33958,4IPQF@91061,COG2755@1,COG2755@2	NA|NA|NA	E	GDSL-like Lipase/Acylhydrolase
PAPOILPD_00367	353496.LBU_1559	2.5e-169	601.3	Lactobacillaceae	coaA	GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.33	ko:K00867	ko00770,ko01100,map00770,map01100	M00120	R02971,R03018,R04391	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000			iECDH1ME8569_1439.ECDH1ME8569_3838,iECH74115_1262.ECH74115_5439,iECSE_1348.ECSE_4265,iECSF_1327.ECSF_3833,iECSP_1301.ECSP_5045,iECW_1372.ECW_m4332,iEcDH1_1363.EcDH1_4016,iEcolC_1368.EcolC_4046,iPC815.YPO3758,iSFV_1184.SFV_4047,iSFxv_1172.SFxv_4418,iWFL_1372.ECW_m4332,iZ_1308.Z5545	Bacteria	1TPHJ@1239,3F42Q@33958,4HA4K@91061,COG1072@1,COG1072@2	NA|NA|NA	F	Pantothenic acid kinase
PAPOILPD_00368	353496.LBU_1558	2.3e-96	358.2	Lactobacillaceae	efp	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02356					ko00000,ko03012				Bacteria	1TR8P@1239,3F4EW@33958,4H9YX@91061,COG0231@1,COG0231@2	NA|NA|NA	J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PAPOILPD_00369	353496.LBU_1557	6.2e-71	274.2	Lactobacillaceae	ymfM			ko:K15539					ko00000				Bacteria	1U7NU@1239,3F9YM@33958,4IHK4@91061,COG1426@1,COG1426@2	NA|NA|NA	S	Helix-turn-helix domain
PAPOILPD_00370	390333.Ldb1909	6e-179	633.3	Lactobacillaceae	pip		3.4.11.5	ko:K01259	ko00330,map00330		R00135		ko00000,ko00001,ko01000,ko01002				Bacteria	1UEDT@1239,3F47H@33958,4HF61@91061,COG2267@1,COG2267@2	NA|NA|NA	E	Releases the N-terminal proline from various substrates
PAPOILPD_00371	353496.LBU_1555	6.6e-193	679.9	Lactobacillaceae													Bacteria	1U547@1239,29NJT@1,309HR@2,3F4IW@33958,4IEVJ@91061	NA|NA|NA		
PAPOILPD_00372	353496.LBU_1552	2.6e-286	990.7	Lactobacillaceae													Bacteria	1TSRV@1239,3F3JJ@33958,4HIAU@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter transmembrane region
PAPOILPD_00373	1293597.BN147_00315	1.5e-122	445.7	Lactobacillaceae													Bacteria	1UI8X@1239,3FBSZ@33958,4ISGE@91061,COG2461@1,COG2461@2	NA|NA|NA	S	PAS domain
PAPOILPD_00374	1423754.BALY01000009_gene78	1.1e-25	122.5	Lactobacillaceae													Bacteria	1TRQ7@1239,3F3ZI@33958,4HE30@91061,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
PAPOILPD_00375	1423754.BALY01000009_gene78	5.7e-40	170.2	Lactobacillaceae													Bacteria	1TRQ7@1239,3F3ZI@33958,4HE30@91061,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
PAPOILPD_00377	353496.LBU_1547	4.2e-155	553.9	Lactobacillaceae	dkg												Bacteria	1TPM1@1239,3F4XF@33958,4HACK@91061,COG0656@1,COG0656@2	NA|NA|NA	S	reductase
PAPOILPD_00378	390333.Ldb1900	4.3e-123	447.6	Lactobacillaceae	endA			ko:K15051					ko00000				Bacteria	1V4X2@1239,3F3Y8@33958,4HIF5@91061,COG2169@1,COG2169@2	NA|NA|NA	F	DNA RNA non-specific endonuclease
PAPOILPD_00379	353496.LBU_1546	4.4e-47	193.7	Bacteria				ko:K08659					ko00000,ko01000,ko01002				Bacteria	COG4690@1,COG4690@2	NA|NA|NA	E	dipeptidase activity
PAPOILPD_00381	353496.LBU_1545	1.3e-105	389.0	Lactobacillaceae													Bacteria	1U7KV@1239,29Q6Z@1,30B5Z@2,3F9VU@33958,4IHHY@91061	NA|NA|NA		
PAPOILPD_00382	353496.LBU_1544	1.2e-55	222.6	Lactobacillaceae	paiA		2.3.1.57	ko:K22441					ko00000,ko01000				Bacteria	1V1RG@1239,3F73H@33958,4HFN7@91061,COG0454@1,COG0456@2	NA|NA|NA	K	Acetyltransferase (GNAT) domain
PAPOILPD_00383	353496.LBU_1543	4.1e-172	610.5	Lactobacillaceae	pepI		3.4.11.5,3.5.1.101	ko:K01259,ko:K18457	ko00330,map00330		R00135		ko00000,ko00001,ko01000,ko01002				Bacteria	1TRMT@1239,3F40N@33958,4HE23@91061,COG2267@1,COG2267@2	NA|NA|NA	E	Releases the N-terminal proline from various substrates
PAPOILPD_00384	353496.LBU_1542	1.2e-147	529.3	Lactobacillaceae	corA			ko:K03284					ko00000,ko02000	1.A.35.1,1.A.35.3			Bacteria	1TPSV@1239,3FCA3@33958,4HAPC@91061,COG0598@1,COG0598@2	NA|NA|NA	P	CorA-like Mg2+ transporter protein
PAPOILPD_00385	353496.LBU_1541	2.3e-154	551.6	Lactobacillaceae			3.5.2.6	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	M00627,M00628	R06363	RC01499	ko00000,ko00001,ko00002,ko01000,ko01504				Bacteria	1U564@1239,3F4WE@33958,4IEXG@91061,COG2367@1,COG2367@2	NA|NA|NA	V	Beta-lactamase enzyme family
PAPOILPD_00386	1293597.BN147_00900	3.3e-26	124.0	Lactobacillaceae													Bacteria	1U729@1239,29PUQ@1,30ASV@2,3F8VW@33958,4IGWR@91061	NA|NA|NA		
PAPOILPD_00387	353496.LBU_1539	4.1e-93	347.4	Lactobacillaceae	yobS	GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:1990837,GO:2000112,GO:2001141											Bacteria	1V1DM@1239,3F5CS@33958,4HG0Y@91061,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
PAPOILPD_00388	353496.LBU_1538	0.0	1159.8	Lactobacillaceae	ydgH	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006790,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009605,GO:0009607,GO:0009987,GO:0030312,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046505,GO:0046506,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0071704,GO:0071944,GO:0075136,GO:1901576		ko:K06994,ko:K07003					ko00000				Bacteria	1TQ7C@1239,3FCCY@33958,4HBM6@91061,COG1511@1,COG1511@2,COG2409@1,COG2409@2	NA|NA|NA	S	MMPL family
PAPOILPD_00389	353496.LBU_1537	7.4e-168	596.7	Lactobacillaceae													Bacteria	1U58Z@1239,29NMZ@1,309JX@2,3F573@33958,4IF0A@91061	NA|NA|NA		
PAPOILPD_00390	1293597.BN147_10135	1.2e-231	808.9	Lactobacillaceae	gabD		1.2.1.16,1.2.1.20,1.2.1.79	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	M00027	R00713,R00714,R02401	RC00080	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP4S@1239,3F47F@33958,4H9MF@91061,COG1012@1,COG1012@2	NA|NA|NA	C	Belongs to the aldehyde dehydrogenase family
PAPOILPD_00391	353496.LBU_1534	2.1e-128	464.9	Lactobacillaceae	yfeJ		6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002				Bacteria	1UAH0@1239,3F4AV@33958,4HHTX@91061,COG0518@1,COG0518@2	NA|NA|NA	F	glutamine amidotransferase
PAPOILPD_00392	353496.LBU_1533	1.6e-93	348.6	Lactobacillaceae			2.4.2.6	ko:K08728	ko00240,map00240		R02806	RC00063	ko00000,ko00001,ko01000				Bacteria	1V8XI@1239,3FBAU@33958,4HJ7M@91061,COG3613@1,COG3613@2	NA|NA|NA	F	Nucleoside 2-deoxyribosyltransferase
PAPOILPD_00393	353496.LBU_1532	1.8e-156	558.5	Lactobacillaceae	hipB	GO:0000976,GO:0000984,GO:0000985,GO:0001017,GO:0001046,GO:0001047,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141		ko:K15773					ko00000,ko02048,ko03000				Bacteria	1VBK2@1239,3FBE7@33958,4HCZ9@91061,COG1396@1,COG1396@2	NA|NA|NA	K	Helix-turn-helix
PAPOILPD_00394	390333.Ldb1885	6.3e-148	530.0	Lactobacillaceae													Bacteria	1VEC5@1239,3F50A@33958,4HKY6@91061,COG0657@1,COG0657@2	NA|NA|NA	I	alpha/beta hydrolase fold
PAPOILPD_00395	390333.Ldb1884	4.9e-105	387.1	Lactobacillaceae	yjbF												Bacteria	1V7NH@1239,3F3SV@33958,4HIU5@91061,COG0398@1,COG0398@2	NA|NA|NA	S	SNARE associated Golgi protein
PAPOILPD_00396	353496.LBU_1529	1.4e-92	345.5	Lactobacillaceae													Bacteria	1V49W@1239,3F5A6@33958,4HHAP@91061,COG1670@1,COG1670@2	NA|NA|NA	J	Acetyltransferase (GNAT) domain
PAPOILPD_00397	353496.LBU_1528	1.6e-225	788.5	Lactobacillaceae	serS	GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009069,GO:0009070,GO:0009987,GO:0010467,GO:0016053,GO:0016070,GO:0016259,GO:0016260,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	6.1.1.11	ko:K01875	ko00970,map00970	M00359,M00360	R03662,R08218	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iAF987.Gmet_3528,iSDY_1059.SDY_2368	Bacteria	1TP4W@1239,3F3M6@33958,4H9Y4@91061,COG0172@1,COG0172@2	NA|NA|NA	J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PAPOILPD_00398	353496.LBU_1527	1e-96	359.4	Lactobacillaceae				ko:K03088					ko00000,ko03021				Bacteria	1V1JW@1239,3F98Z@33958,4HM6B@91061,COG1595@1,COG1595@2	NA|NA|NA	K	Sigma-70 region 2
PAPOILPD_00399	353496.LBU_1526	8.9e-148	529.6	Lactobacillaceae													Bacteria	1TQKG@1239,2DBFK@1,2Z8Z7@2,3F7ZY@33958,4IGB4@91061	NA|NA|NA	S	Protein of unknown function (DUF3298)
PAPOILPD_00400	353496.LBU_0506	5.2e-116	423.7	Lactobacillaceae	yvyE		3.4.13.9	ko:K01271					ko00000,ko01000,ko01002				Bacteria	1V6MQ@1239,3F3SQ@33958,4HBIT@91061,COG1739@1,COG1739@2	NA|NA|NA	S	YigZ family
PAPOILPD_00401	353496.LBU_0507	6.8e-237	826.2	Lactobacillaceae	comFA	GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576		ko:K02240		M00429			ko00000,ko00002,ko02044	3.A.11.1			Bacteria	1TPZE@1239,3F3TQ@33958,4HB00@91061,COG4098@1,COG4098@2	NA|NA|NA	L	Helicase C-terminal domain protein
PAPOILPD_00402	353496.LBU_0508	2.6e-102	378.3	Lactobacillaceae	comFC			ko:K02242		M00429			ko00000,ko00002,ko02044				Bacteria	1V73S@1239,3F714@33958,4HJ6R@91061,COG1040@1,COG1040@2	NA|NA|NA	S	Competence protein
PAPOILPD_00403	353496.LBU_0509	3.9e-96	357.5	Lactobacillaceae	hpf	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113		ko:K05808					ko00000,ko03009				Bacteria	1V1D5@1239,3F40M@33958,4HFX9@91061,COG1544@1,COG1544@2	NA|NA|NA	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PAPOILPD_00404	390333.Ldb0607	0.0	1533.5	Lactobacillaceae	secA	GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680		ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4			Bacteria	1TPEY@1239,3F4DH@33958,4HA22@91061,COG0653@1,COG0653@2	NA|NA|NA	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PAPOILPD_00405	353496.LBU_0511	2.3e-187	661.4	Lactobacillaceae	prfB	GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02836					ko00000,ko03012				Bacteria	1TPSB@1239,3F3SN@33958,4H9N2@91061,COG1186@1,COG1186@2	NA|NA|NA	J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PAPOILPD_00406	353496.LBU_0512	9.1e-31	139.4	Lactobacillaceae													Bacteria	1U6A5@1239,29P93@1,30A77@2,3F7F0@33958,4IG1D@91061	NA|NA|NA		
PAPOILPD_00407	353496.LBU_0513	2.6e-172	611.3	Lactobacillaceae	hprK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464		ko:K06023					ko00000,ko01000				Bacteria	1TP5Z@1239,3F3Z3@33958,4HAXR@91061,COG1493@1,COG1493@2	NA|NA|NA	F	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
PAPOILPD_00408	390333.Ldb0611	5.5e-155	553.5	Lactobacillaceae	lgt	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008961,GO:0009058,GO:0009059,GO:0009898,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0019538,GO:0031224,GO:0031226,GO:0034645,GO:0036211,GO:0040007,GO:0042157,GO:0042158,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:0098552,GO:0098562,GO:0140096,GO:1901564,GO:1901566,GO:1901576	2.1.1.199	ko:K03438,ko:K13292					ko00000,ko01000,ko03009				Bacteria	1TPAK@1239,3F42N@33958,4HAT0@91061,COG0682@1,COG0682@2	NA|NA|NA	M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PAPOILPD_00409	353496.LBU_0515	1.8e-187	661.8	Lactobacillaceae	gpsA	GO:0003674,GO:0003824,GO:0004367,GO:0006072,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0046167,GO:0047952,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901576	1.1.1.94	ko:K00057	ko00564,ko01110,map00564,map01110		R00842,R00844	RC00029	ko00000,ko00001,ko01000				Bacteria	1TQ5P@1239,3F4C8@33958,4HAXW@91061,COG0240@1,COG0240@2	NA|NA|NA	I	Glycerol-3-phosphate dehydrogenase
PAPOILPD_00410	390333.Ldb0613	3.2e-175	620.9	Lactobacillaceae	trxB		1.8.1.9	ko:K00384	ko00450,map00450		R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000				Bacteria	1TNZS@1239,3F411@33958,4HA4N@91061,COG0492@1,COG0492@2	NA|NA|NA	C	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
PAPOILPD_00411	390333.Ldb0614	0.0	1315.1	Lactobacillaceae	uvrB			ko:K03702,ko:K08999	ko03420,map03420				ko00000,ko00001,ko03400				Bacteria	1TPKB@1239,3F3XM@33958,4HB81@91061,COG0556@1,COG0556@2	NA|NA|NA	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
PAPOILPD_00412	390333.Ldb0615	0.0	1882.8	Lactobacillaceae	uvrA			ko:K03701	ko03420,map03420				ko00000,ko00001,ko03400				Bacteria	1TPIJ@1239,3F4TZ@33958,4HAW9@91061,COG0178@1,COG0178@2	NA|NA|NA	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
PAPOILPD_00413	353496.LBU_0519	7.7e-89	333.2	Lactobacillaceae													Bacteria	1V759@1239,3F58J@33958,4HK5F@91061,COG3247@1,COG3247@2	NA|NA|NA	S	Short repeat of unknown function (DUF308)
PAPOILPD_00414	390333.Ldb0617	3.2e-50	204.1	Lactobacillaceae				ko:K16203					ko00000,ko01000,ko01002	3.A.1.5.2			Bacteria	1TSUZ@1239,3FB04@33958,4HC5R@91061,COG2362@1,COG2362@2	NA|NA|NA	E	D-aminopeptidase
PAPOILPD_00415	1293597.BN147_03065	6.4e-08	62.0	Lactobacillaceae	dmpA		3.4.11.19	ko:K01266					ko00000,ko01000,ko01002				Bacteria	1TQHA@1239,3F53N@33958,4HAZM@91061,COG3191@1,COG3191@2	NA|NA|NA	EQ	Peptidase family S58
PAPOILPD_00416	1293597.BN147_03065	7e-132	476.9	Lactobacillaceae	dmpA		3.4.11.19	ko:K01266					ko00000,ko01000,ko01002				Bacteria	1TQHA@1239,3F53N@33958,4HAZM@91061,COG3191@1,COG3191@2	NA|NA|NA	EQ	Peptidase family S58
PAPOILPD_00417	353496.LBU_0523	1.2e-163	582.4	Lactobacillaceae	rapZ	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0034641,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363		ko:K06958					ko00000,ko03019				Bacteria	1TPS4@1239,3F4NY@33958,4H9KM@91061,COG1660@1,COG1660@2	NA|NA|NA	S	Displays ATPase and GTPase activities
PAPOILPD_00418	353496.LBU_0524	1.8e-187	661.8	Lactobacillaceae	ybhK												Bacteria	1TPNV@1239,3F4D5@33958,4HA0Z@91061,COG0391@1,COG0391@2	NA|NA|NA	S	Required for morphogenesis under gluconeogenic growth conditions
PAPOILPD_00419	353496.LBU_0525	3.7e-168	597.4	Lactobacillaceae	whiA	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0043937,GO:0044464,GO:0050789,GO:0050793,GO:0065007,GO:0071944		ko:K09762					ko00000				Bacteria	1TP2X@1239,3F4AB@33958,4HB4H@91061,COG1481@1,COG1481@2	NA|NA|NA	K	May be required for sporulation
PAPOILPD_00420	1293597.BN147_03085	1.2e-100	372.5	Lactobacillaceae	clpP	GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0006355,GO:0006508,GO:0006515,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212				ko00000,ko00001,ko01000,ko01002				Bacteria	1TQ91@1239,3F3M0@33958,4HA8J@91061,COG0740@1,COG0740@2	NA|NA|NA	O	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
PAPOILPD_00421	353496.LBU_0527	2.5e-281	974.2	Lactobacillaceae													Bacteria	1W1FZ@1239,2FIUN@1,34AK2@2,3F4QI@33958,4HYXZ@91061	NA|NA|NA		
PAPOILPD_00422	1293597.BN147_03100	5.7e-143	513.8	Lactobacillaceae	ABC-SBP			ko:K01989,ko:K05832		M00247			ko00000,ko00002,ko02000				Bacteria	1TPB0@1239,3F462@33958,4HESK@91061,COG2984@1,COG2984@2	NA|NA|NA	S	ABC transporter
PAPOILPD_00423	390333.Ldb0631	3.2e-148	531.2	Lactobacillaceae	XK27_08840			ko:K05832		M00247			ko00000,ko00002,ko02000				Bacteria	1TPDJ@1239,3F40J@33958,4HBMY@91061,COG4120@1,COG4120@2	NA|NA|NA	U	Belongs to the binding-protein-dependent transport system permease family
PAPOILPD_00424	353496.LBU_0530	5.3e-136	490.3	Lactobacillaceae	XK27_08845			ko:K05833		M00247			ko00000,ko00002,ko02000				Bacteria	1TPAN@1239,3F3NW@33958,4HCHC@91061,COG1101@1,COG1101@2	NA|NA|NA	S	ABC transporter, ATP-binding protein
PAPOILPD_00426	390333.Ldb0635	9.3e-189	666.0	Lactobacillaceae	gap	GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009986,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0019362,GO:0019637,GO:0019674,GO:0022610,GO:0034641,GO:0036094,GO:0043891,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044464,GO:0044650,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051287,GO:0051704,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:0097159,GO:0140030,GO:0140032,GO:1901265,GO:1901360,GO:1901363,GO:1901564	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147			iJR904.b1416,iJR904.b1417	Bacteria	1TNYU@1239,3F3JS@33958,4H9NS@91061,COG0057@1,COG0057@2	NA|NA|NA	G	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
PAPOILPD_00427	353496.LBU_0533	8.7e-226	789.3	Lactobacillaceae	pgk	GO:0001871,GO:0002020,GO:0003674,GO:0003824,GO:0004618,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009893,GO:0009986,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019222,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030162,GO:0030193,GO:0030195,GO:0030246,GO:0030247,GO:0030312,GO:0031323,GO:0031325,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043532,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045862,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050818,GO:0050819,GO:0050878,GO:0051171,GO:0051173,GO:0051186,GO:0051188,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051917,GO:0051919,GO:0055086,GO:0060255,GO:0061041,GO:0061045,GO:0065007,GO:0065008,GO:0070613,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0080134,GO:0090407,GO:1900046,GO:1900047,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903034,GO:1903035,GO:1903317,GO:1903319,GO:2001065	2.7.2.3,5.3.1.1	ko:K00927,ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01015,R01512	RC00002,RC00043,RC00423	ko00000,ko00001,ko00002,ko01000,ko04147			iSB619.SA_RS04145	Bacteria	1TP3H@1239,3F3SC@33958,4H9R3@91061,COG0126@1,COG0126@2	NA|NA|NA	F	Belongs to the phosphoglycerate kinase family
PAPOILPD_00428	353496.LBU_0534	6e-140	503.4	Lactobacillaceae	tpiA	GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616	2.7.2.3,5.3.1.1	ko:K00927,ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01015,R01512	RC00002,RC00043,RC00423	ko00000,ko00001,ko00002,ko01000,ko04147			iHN637.CLJU_RS19265	Bacteria	1TP2F@1239,3F494@33958,4HAPT@91061,COG0149@1,COG0149@2	NA|NA|NA	G	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
PAPOILPD_00429	1293597.BN147_03140	9.8e-95	352.8	Lactobacillaceae			3.2.2.20	ko:K01246,ko:K06977	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	1V7GR@1239,3F44B@33958,4HJ11@91061,COG0454@1,COG0456@2	NA|NA|NA	K	acetyltransferase
PAPOILPD_00430	353496.LBU_0537	4.5e-100	370.5	Lactobacillaceae													Bacteria	1U5NS@1239,29NVF@1,309TI@2,3F68I@33958,4IFDC@91061	NA|NA|NA		
PAPOILPD_00431	353496.LBU_0538	4.5e-155	553.9	Lactobacillaceae	ycsE												Bacteria	1V5FB@1239,3F58Y@33958,4HGY8@91061,COG0561@1,COG0561@2	NA|NA|NA	S	Sucrose-6F-phosphate phosphohydrolase
PAPOILPD_00432	353496.LBU_0539	7.3e-129	466.5	Lactobacillaceae	ung	GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360	3.2.2.27	ko:K03648	ko03410,ko05340,map03410,map05340				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPSN@1239,3F3W0@33958,4HBTR@91061,COG0692@1,COG0692@2	NA|NA|NA	L	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PAPOILPD_00433	353496.LBU_0540	9.7e-183	646.0	Lactobacillaceae	pta		2.3.1.8,3.6.3.21	ko:K00625,ko:K02028,ko:K13788	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	M00236,M00357,M00579	R00230,R00921	RC00004,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3		iSB619.SA_RS03155	Bacteria	1TPQ0@1239,3F3MW@33958,4H9VH@91061,COG0280@1,COG0280@2	NA|NA|NA	C	phosphate acetyltransferase
PAPOILPD_00434	353496.LBU_0541	4.6e-85	320.5	Lactobacillaceae	ydiB	GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360	2.7.1.221,5.1.1.1	ko:K01775,ko:K06925,ko:K07102	ko00473,ko00520,ko01100,ko01502,map00473,map00520,map01100,map01502		R00401,R08968,R11024	RC00002,RC00078,RC00285	ko00000,ko00001,ko01000,ko01011,ko03016				Bacteria	1V6CV@1239,3F3MR@33958,4HIIF@91061,COG0802@1,COG0802@2	NA|NA|NA	O	Hydrolase, P-loop family
PAPOILPD_00435	353496.LBU_0542	3.4e-97	360.9	Lactobacillaceae	dnaQ		2.7.7.7	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1V57H@1239,3F42Z@33958,4HI1V@91061,COG0847@1,COG0847@2	NA|NA|NA	L	DNA polymerase III
PAPOILPD_00436	390333.Ldb0646	7.2e-161	573.2	Lactobacillaceae	murB		1.3.1.98	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100		R03191,R03192	RC02639	ko00000,ko00001,ko01000,ko01011				Bacteria	1TP3W@1239,3F40T@33958,4HAD8@91061,COG0812@1,COG0812@2	NA|NA|NA	M	Cell wall formation
PAPOILPD_00437	353496.LBU_0544	2.7e-202	711.1	Lactobacillaceae	potA		3.6.3.30,3.6.3.31	ko:K02010,ko:K11072	ko02010,map02010	M00190,M00299			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.10,3.A.1.11.1		iSB619.SA_RS05380	Bacteria	1TP2M@1239,3F40H@33958,4H9MS@91061,COG3842@1,COG3842@2	NA|NA|NA	P	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
PAPOILPD_00438	390333.Ldb0648	2.4e-142	511.5	Lactobacillaceae	potB			ko:K11071	ko02010,map02010	M00299			ko00000,ko00001,ko00002,ko02000	3.A.1.11.1			Bacteria	1TQ7Z@1239,3F4CM@33958,4HAYS@91061,COG1176@1,COG1176@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00439	353496.LBU_0546	1.5e-128	465.7	Lactobacillaceae	potC	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008519,GO:0015075,GO:0015101,GO:0015203,GO:0015399,GO:0015405,GO:0015417,GO:0015595,GO:0015606,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0015848,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072488,GO:0098533,GO:0098655,GO:0098796,GO:0098797,GO:1902047,GO:1902494,GO:1902495,GO:1903711,GO:1904949,GO:1990351		ko:K11070	ko02010,map02010	M00299			ko00000,ko00001,ko00002,ko02000	3.A.1.11.1		iSBO_1134.SBO_1939	Bacteria	1V0VD@1239,3F3ZN@33958,4H9ZC@91061,COG1177@1,COG1177@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00440	390333.Ldb0650	1.7e-204	718.4	Lactobacillaceae	potD			ko:K11069	ko02010,map02010	M00299			ko00000,ko00001,ko00002,ko02000	3.A.1.11.1		iSB619.SA_RS05395	Bacteria	1TPY1@1239,3F3W1@33958,4HAET@91061,COG0687@1,COG0687@2	NA|NA|NA	P	ABC transporter
PAPOILPD_00441	353496.LBU_0548	4.1e-150	537.3	Lactobacillaceae	dacA	GO:0003674,GO:0003824,GO:0004016,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0009975,GO:0016020,GO:0016021,GO:0016829,GO:0016849,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944	2.7.7.85	ko:K18672					ko00000,ko01000				Bacteria	1TPRW@1239,3F4N3@33958,4H9XZ@91061,COG1624@1,COG1624@2	NA|NA|NA	S	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PAPOILPD_00442	353496.LBU_0549	8.5e-160	569.7	Lactobacillaceae	ybbR	GO:0008150,GO:0031279,GO:0031281,GO:0043085,GO:0044093,GO:0045761,GO:0045762,GO:0050790,GO:0051339,GO:0051349,GO:0065007,GO:0065009											Bacteria	1TSIV@1239,3F41C@33958,4HD8Y@91061,COG4856@1,COG4856@2	NA|NA|NA	S	YbbR-like protein
PAPOILPD_00443	353496.LBU_0550	9.3e-253	879.0	Lactobacillaceae	glmM	GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008966,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019438,GO:0019538,GO:0034641,GO:0034654,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046483,GO:0046777,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901576	5.4.2.10	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130		R02060	RC00408	ko00000,ko00001,ko01000			iSB619.SA_RS11275,iSBO_1134.SBO_3206	Bacteria	1TP1X@1239,3F3W5@33958,4HB16@91061,COG1109@1,COG1109@2	NA|NA|NA	G	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PAPOILPD_00444	390333.Ldb1635	4.9e-281	973.4	Lactobacillaceae	dnaX	GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576	2.7.7.7	ko:K02341,ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TPS9@1239,3F3P2@33958,4HAUE@91061,COG2812@1,COG2812@2	NA|NA|NA	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PAPOILPD_00445	390333.Ldb1634	1.3e-51	208.8	Lactobacillaceae	yaaK			ko:K09747					ko00000				Bacteria	1VA1S@1239,3F7F3@33958,4HKH3@91061,COG0718@1,COG0718@2	NA|NA|NA	S	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PAPOILPD_00446	353496.LBU_1394	4.5e-106	390.6	Lactobacillaceae	recR	GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576		ko:K06187	ko03440,map03440				ko00000,ko00001,ko03400				Bacteria	1TR87@1239,3F4JQ@33958,4HAZR@91061,COG0353@1,COG0353@2	NA|NA|NA	L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PAPOILPD_00447	353496.LBU_1393	1.7e-32	144.8	Lactobacillaceae													Bacteria	1U6E6@1239,29PC5@1,30AAD@2,3F7PR@33958,4IG5Y@91061	NA|NA|NA	S	Protein of unknown function (DUF2508)
PAPOILPD_00448	353496.LBU_1392	1.2e-112	412.5	Lactobacillaceae	tmk	GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.4.9	ko:K00943	ko00240,ko01100,map00240,map01100	M00053	R02094,R02098	RC00002	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS02535	Bacteria	1V1HE@1239,3F4JR@33958,4HGWR@91061,COG0125@1,COG0125@2	NA|NA|NA	F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PAPOILPD_00449	353496.LBU_1391	2.9e-51	207.6	Lactobacillaceae	yaaQ												Bacteria	1V6NI@1239,3F6VW@33958,4HIHA@91061,COG3870@1,COG3870@2	NA|NA|NA	S	Cyclic-di-AMP receptor
PAPOILPD_00450	353496.LBU_1390	8.9e-156	556.2	Lactobacillaceae	holB		2.7.7.7	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TRVS@1239,3F50D@33958,4HA3T@91061,COG0470@1,COG0470@2	NA|NA|NA	L	DNA polymerase III
PAPOILPD_00451	353496.LBU_1389	2e-47	194.9	Lactobacillaceae	yabA	GO:0003674,GO:0005488,GO:0005515,GO:0042802											Bacteria	1VA1F@1239,3F864@33958,4HKND@91061,COG4467@1,COG4467@2	NA|NA|NA	L	Involved in initiation control of chromosome replication
PAPOILPD_00452	353496.LBU_1388	2.1e-157	561.6	Lactobacillaceae	rsmI	GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.198	ko:K07056					ko00000,ko01000,ko03009				Bacteria	1TP6U@1239,3F4AI@33958,4HAH8@91061,COG0313@1,COG0313@2	NA|NA|NA	H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PAPOILPD_00453	390333.Ldb1626	4.1e-141	507.3	Lactobacillaceae	fat		3.1.2.21	ko:K01071	ko00061,ko01100,map00061,map01100		R04014,R08157,R08158	RC00014,RC00039	ko00000,ko00001,ko01000,ko01004				Bacteria	1V3RB@1239,3F41B@33958,4HHJ4@91061,COG3884@1,COG3884@2	NA|NA|NA	I	Acyl-ACP thioesterase
PAPOILPD_00454	353496.LBU_1386	1.3e-85	322.4	Lactobacillaceae	folT												Bacteria	1V5I7@1239,3F5GB@33958,4HK9Q@91061,COG4720@1,COG4720@2	NA|NA|NA	S	ECF transporter, substrate-specific component
PAPOILPD_00455	353496.LBU_1384	1e-125	456.1	Lactobacillaceae	yeaZ	GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564	2.3.1.234	ko:K01409,ko:K14742			R10648	RC00070,RC00416	ko00000,ko01000,ko03016				Bacteria	1V4YX@1239,3F3WV@33958,4HHD7@91061,COG1214@1,COG1214@2	NA|NA|NA	O	Universal bacterial protein YeaZ
PAPOILPD_00456	353496.LBU_1383	2.5e-92	344.7	Lactobacillaceae	rimI		2.3.1.128	ko:K03789					ko00000,ko01000,ko03009				Bacteria	1V6KU@1239,3F522@33958,4HIKU@91061,COG0454@1,COG0456@2	NA|NA|NA	K	Ribosomal-protein-alanine acetyltransferase
PAPOILPD_00457	353496.LBU_1382	7.1e-192	676.4	Lactobacillaceae	tsaD	GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564	2.3.1.234	ko:K01409,ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	R10648	RC00070,RC00416	ko00000,ko00001,ko00002,ko01000,ko02044,ko03016	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4			Bacteria	1TQDR@1239,3F4AX@33958,4HANB@91061,COG0533@1,COG0533@2	NA|NA|NA	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PAPOILPD_00458	390333.Ldb1620	4.9e-300	1036.6	Lactobacillaceae	uup			ko:K06158					ko00000,ko03012				Bacteria	1TPAX@1239,3F3QI@33958,4HBVV@91061,COG0488@1,COG0488@2	NA|NA|NA	S	ABC transporter, ATP-binding protein
PAPOILPD_00459	390333.Ldb1619	2.5e-121	441.4	Lactobacillaceae	rex			ko:K01926					ko00000,ko03000				Bacteria	1TSMR@1239,3F40G@33958,4HB7Q@91061,COG2344@1,COG2344@2	NA|NA|NA	K	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
PAPOILPD_00460	353496.LBU_1379	1.7e-42	178.3	Lactobacillaceae	groS	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0016020,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0019219,GO:0019222,GO:0019899,GO:0030312,GO:0031323,GO:0031326,GO:0032991,GO:0033554,GO:0034605,GO:0035375,GO:0035966,GO:0040007,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046677,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0051716,GO:0060255,GO:0061077,GO:0065007,GO:0071944,GO:0080090,GO:0101031,GO:1903506,GO:1990220,GO:2000112,GO:2001141		ko:K04078					ko00000,ko03029,ko03110				Bacteria	1V9ZM@1239,3F7CZ@33958,4HKEK@91061,COG0234@1,COG0234@2	NA|NA|NA	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PAPOILPD_00461	390333.Ldb1617	4.5e-286	989.9	Lactobacillaceae	groL	GO:0001817,GO:0001819,GO:0001871,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009986,GO:0009987,GO:0016465,GO:0030246,GO:0030247,GO:0032677,GO:0032757,GO:0032879,GO:0032880,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044764,GO:0046812,GO:0048518,GO:0048522,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051082,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051704,GO:0061077,GO:0065007,GO:0070201,GO:0090087,GO:0098630,GO:0098743,GO:0101031,GO:1903530,GO:1903532,GO:1904951,GO:1990220,GO:2000482,GO:2000484,GO:2001065		ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152				ko00000,ko00001,ko03019,ko03029,ko03110,ko04147				Bacteria	1TP1T@1239,3F3MM@33958,4HA38@91061,COG0459@1,COG0459@2	NA|NA|NA	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
PAPOILPD_00462	353496.LBU_1377	0.0	1634.8	Lactobacillaceae	mutS	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391		ko:K03555	ko03430,map03430				ko00000,ko00001,ko03400				Bacteria	1TPRJ@1239,3F4A5@33958,4HA63@91061,COG0249@1,COG0249@2	NA|NA|NA	L	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PAPOILPD_00463	353496.LBU_1376	0.0	1190.6	Lactobacillaceae	mutL	GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0032300,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990391		ko:K03572	ko03430,map03430				ko00000,ko00001,ko03400				Bacteria	1TPGK@1239,3F3PK@33958,4HB34@91061,COG0323@1,COG0323@2	NA|NA|NA	L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PAPOILPD_00464	390333.Ldb1614	3.2e-104	384.4	Lactobacillaceae	ruvA	GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009378,GO:0009379,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0031668,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051276,GO:0051289,GO:0051716,GO:0065003,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494	3.6.4.12	ko:K03550	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1V3KF@1239,3F42W@33958,4HHI5@91061,COG0632@1,COG0632@2	NA|NA|NA	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
PAPOILPD_00465	353496.LBU_1374	1.6e-185	655.2	Lactobacillaceae	ruvB	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03551	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1TR47@1239,3F47S@33958,4HBMW@91061,COG2255@1,COG2255@2	NA|NA|NA	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
PAPOILPD_00466	353496.LBU_1373	7.6e-33	146.7	Lactobacillaceae	yajC	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031522,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0071944		ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2			Bacteria	1VEMC@1239,3F7EY@33958,4HNK0@91061,COG1862@1,COG1862@2	NA|NA|NA	U	Preprotein translocase
PAPOILPD_00467	353496.LBU_1372	3.9e-281	973.4	Lactobacillaceae	zwf	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.1.1.363,1.1.1.49	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	M00004,M00006,M00008	R00835,R02736,R10907	RC00001,RC00066	ko00000,ko00001,ko00002,ko01000,ko04147			iIT341.HP1101	Bacteria	1TPYF@1239,3F48G@33958,4HA73@91061,COG0364@1,COG0364@2	NA|NA|NA	G	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PAPOILPD_00468	390333.Ldb1610	1.5e-203	715.3	Lactobacillaceae	dinB	GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031668,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071496,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904	2.7.7.7	ko:K02346					ko00000,ko01000,ko03400				Bacteria	1TP42@1239,3F44N@33958,4HADJ@91061,COG0389@1,COG0389@2	NA|NA|NA	L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PAPOILPD_00469	353496.LBU_1370	1.9e-175	621.7	Lactobacillaceae	nrnA	GO:0008150,GO:0040007	3.1.13.3,3.1.3.7	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120		R00188,R00508	RC00078	ko00000,ko00001,ko01000,ko03400				Bacteria	1TPXX@1239,3F4FC@33958,4H9ZW@91061,COG0618@1,COG0618@2	NA|NA|NA	S	DHHA1 domain protein
PAPOILPD_00470	353496.LBU_1369	1.5e-221	775.4	Lactobacillaceae	cshB	GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009266,GO:0009295,GO:0009409,GO:0009628,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363	3.6.4.13	ko:K05592,ko:K18692	ko03018,map03018				ko00000,ko00001,ko01000,ko03009,ko03019				Bacteria	1TPAP@1239,3F4FQ@33958,4HA98@91061,COG0513@1,COG0513@2	NA|NA|NA	JKL	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
PAPOILPD_00471	353496.LBU_1368	0.0	1710.3	Lactobacillaceae	alaS	GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TPK6@1239,3F3QS@33958,4H9XC@91061,COG0013@1,COG0013@2	NA|NA|NA	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PAPOILPD_00472	353496.LBU_1367	6.3e-41	172.9	Lactobacillaceae	yrzL												Bacteria	1VAC4@1239,3F7EG@33958,4HKD0@91061,COG4472@1,COG4472@2	NA|NA|NA	S	Belongs to the UPF0297 family
PAPOILPD_00473	353496.LBU_1366	3e-72	277.7	Lactobacillaceae	yqgF	GO:0000966,GO:0000967,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0140097,GO:1901360		ko:K07447					ko00000,ko01000				Bacteria	1V6ER@1239,3F6NI@33958,4HH04@91061,COG0816@1,COG0816@2	NA|NA|NA	J	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PAPOILPD_00474	353496.LBU_1365	2.5e-39	167.9	Lactobacillaceae	yrzB												Bacteria	1VAPW@1239,3F6X3@33958,4HKV7@91061,COG3906@1,COG3906@2	NA|NA|NA	S	Belongs to the UPF0473 family
PAPOILPD_00475	353496.LBU_1364	0.0	1416.4	Lactobacillaceae	mutS2	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391		ko:K07456	ko03430,map03430				ko00000,ko00001,ko03400				Bacteria	1TP5W@1239,3F4DX@33958,4H9NZ@91061,COG1193@1,COG1193@2	NA|NA|NA	L	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
PAPOILPD_00476	353496.LBU_1363	1.7e-53	214.9	Lactobacillaceae	trxA	GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748		ko:K03671	ko04621,ko05418,map04621,map05418				ko00000,ko00001,ko03110				Bacteria	1VA3Y@1239,3F6Y3@33958,4HKKX@91061,COG3118@1,COG3118@2	NA|NA|NA	O	Belongs to the thioredoxin family
PAPOILPD_00477	353496.LBU_1362	5.6e-65	253.4	Lactobacillaceae	yslB												Bacteria	1VD7N@1239,3F7ZI@33958,4HKV3@91061,COG1719@1,COG1719@2	NA|NA|NA	S	Protein of unknown function (DUF2507)
PAPOILPD_00478	353496.LBU_1361	8.1e-111	406.4	Lactobacillaceae	rdgB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576	3.6.1.66,5.1.1.3	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100		R00260,R00426,R00720,R01855,R02100,R02720,R03531	RC00002,RC00302	ko00000,ko00001,ko01000,ko01011				Bacteria	1V6RN@1239,3F3KD@33958,4HCP6@91061,COG0127@1,COG0127@2	NA|NA|NA	F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PAPOILPD_00479	353496.LBU_1360	3.3e-147	527.7	Lactobacillaceae	ykuT	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0006810,GO:0006950,GO:0006970,GO:0008150,GO:0008381,GO:0009628,GO:0009987,GO:0015267,GO:0022803,GO:0022836,GO:0022857,GO:0033554,GO:0042802,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0071214,GO:0071470,GO:0104004		ko:K22044					ko00000,ko02000	1.A.23.3			Bacteria	1TR9Z@1239,3F49U@33958,4HCB8@91061,COG0668@1,COG0668@2	NA|NA|NA	M	mechanosensitive ion channel
PAPOILPD_00480	1293597.BN147_02795	5.5e-10	70.9	Lactobacillaceae	WQ51_05790												Bacteria	1VAXN@1239,3F6KB@33958,4HM93@91061,COG4768@1,COG4768@2	NA|NA|NA	S	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
PAPOILPD_00481	353496.LBU_1358	1.8e-41	175.3	Lactobacillaceae													Bacteria	1U63A@1239,29P3Z@1,30A26@2,3F6XS@33958,4IFSN@91061	NA|NA|NA		
PAPOILPD_00483	390333.Ldb1594	5.9e-213	746.5	Lactobacillaceae	pepQ		3.4.13.9	ko:K01271					ko00000,ko01000,ko01002				Bacteria	1TQ6R@1239,3F3X5@33958,4HA5I@91061,COG0006@1,COG0006@2	NA|NA|NA	E	Creatinase/Prolidase N-terminal domain
PAPOILPD_00484	390333.Ldb1593	2.5e-178	631.3	Lactobacillaceae	ccpA	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141		ko:K02529					ko00000,ko03000				Bacteria	1TQ7K@1239,3F4AA@33958,4H9NG@91061,COG1609@1,COG1609@2	NA|NA|NA	K	catabolite control protein A
PAPOILPD_00485	353496.LBU_1355	2.8e-57	227.6	Lactobacillaceae													Bacteria	1VX4A@1239,2C26E@1,3424N@2,3F70Q@33958,4HXT9@91061	NA|NA|NA		
PAPOILPD_00486	390333.Ldb1591	8.3e-276	955.7	Lactobacillaceae	yunD		3.1.3.5	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110		R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000				Bacteria	1TPV2@1239,3FC1D@33958,4H9VJ@91061,COG0737@1,COG0737@2	NA|NA|NA	F	Belongs to the 5'-nucleotidase family
PAPOILPD_00487	390333.Ldb1590	5.3e-82	310.5	Lactobacillaceae	yutD												Bacteria	1VA85@1239,3F66P@33958,4HKF7@91061,COG4470@1,COG4470@2	NA|NA|NA	S	Protein of unknown function (DUF1027)
PAPOILPD_00488	353496.LBU_1352	2.9e-142	511.1	Lactobacillaceae	nagD		2.7.1.25,3.1.3.41	ko:K00860,ko:K01101	ko00230,ko00627,ko00920,ko01100,ko01120,map00230,map00627,map00920,map01100,map01120	M00176	R00509,R03024,R04928	RC00002,RC00078,RC00151	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQGM@1239,3F49D@33958,4HA3R@91061,COG0647@1,COG0647@2	NA|NA|NA	G	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
PAPOILPD_00489	353496.LBU_1351	1.2e-103	382.5	Lactobacillaceae													Bacteria	1V7UW@1239,3F4YP@33958,4HHH4@91061,COG4478@1,COG4478@2	NA|NA|NA	S	Protein of unknown function (DUF1461)
PAPOILPD_00490	390333.Ldb0180	5.2e-184	650.2	Lactobacillaceae	prs		2.7.6.1	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	M00005	R01049	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_2848	Bacteria	1TQ6Q@1239,3F3V8@33958,4HB61@91061,COG0462@1,COG0462@2	NA|NA|NA	F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAPOILPD_00491	353496.LBU_0135	4e-124	450.7	Lactobacillaceae													Bacteria	1TSFW@1239,3F5BW@33958,4HI0M@91061,COG0596@1,COG0596@2	NA|NA|NA	S	Alpha/beta hydrolase family
PAPOILPD_00492	390333.Ldb0178	4.6e-141	507.3	Lactobacillaceae	epsV		2.7.8.12	ko:K09809					ko00000,ko01000				Bacteria	1VATJ@1239,3F52I@33958,4HNAP@91061,COG1216@1,COG1216@2	NA|NA|NA	S	glycosyl transferase family 2
PAPOILPD_00493	353496.LBU_0133	1.5e-159	568.9	Lactobacillaceae	ypuA												Bacteria	1UY79@1239,3F416@33958,4HAZ5@91061,COG4086@1,COG4086@2	NA|NA|NA	S	Protein of unknown function (DUF1002)
PAPOILPD_00494	353496.LBU_0132	1e-126	459.5	Lactobacillaceae	rnhA	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576	3.1.26.4	ko:K03469,ko:K06993	ko03030,map03030				ko00000,ko00001,ko01000,ko03032				Bacteria	1V4A0@1239,3F3RG@33958,4HHJ9@91061,COG0328@1,COG0328@2,COG3341@1,COG3341@2	NA|NA|NA	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PAPOILPD_00495	353496.LBU_0131	1.3e-179	635.6	Lactobacillaceae													Bacteria	1UY1T@1239,3F5D8@33958,4I2Y3@91061,COG4814@1,COG4814@2	NA|NA|NA	S	Alpha/beta hydrolase of unknown function (DUF915)
PAPOILPD_00496	353496.LBU_0130	2.2e-279	967.6	Lactobacillaceae	cls	GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0032502,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576		ko:K06131	ko00564,ko01100,map00564,map01100		R07390	RC00017	ko00000,ko00001,ko01000				Bacteria	1TPKY@1239,3F3SF@33958,4H9TI@91061,COG1502@1,COG1502@2	NA|NA|NA	I	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAPOILPD_00497	353496.LBU_0129	6.4e-79	300.1	Lactobacillaceae													Bacteria	1U58T@1239,2CCJZ@1,303JM@2,3F565@33958,4IF00@91061	NA|NA|NA		
PAPOILPD_00498	390333.Ldb0172	7.2e-132	476.5	Lactobacillaceae	cobB			ko:K12410					ko00000,ko01000				Bacteria	1TQKD@1239,3F4WS@33958,4HC4I@91061,COG0846@1,COG0846@2	NA|NA|NA	K	SIR2 family
PAPOILPD_00499	353496.LBU_0127	4.9e-63	246.9	Lactobacillaceae	yeaO												Bacteria	1VABH@1239,3F715@33958,4HKI2@91061,COG3189@1,COG3189@2	NA|NA|NA	S	Protein of unknown function, DUF488
PAPOILPD_00500	390333.Ldb0170	1.5e-120	438.7	Lactobacillaceae	mpg	GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360	3.2.2.21	ko:K03652	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	1V1E6@1239,3F59D@33958,4HG5E@91061,COG2094@1,COG2094@2	NA|NA|NA	L	Belongs to the DNA glycosylase MPG family
PAPOILPD_00501	353496.LBU_0125	4.4e-270	936.8	Lactobacillaceae	glnP			ko:K02029,ko:K02030,ko:K17073,ko:K17074	ko02010,map02010	M00236,M00589			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.20			Bacteria	1TPM3@1239,3F48Y@33958,4HAS2@91061,COG0765@1,COG0765@2,COG0834@1,COG0834@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00502	390333.Ldb0168	3.3e-138	497.7	Lactobacillaceae	glnQ			ko:K17074,ko:K17076	ko02010,map02010	M00589			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3.20			Bacteria	1TNYD@1239,3F3QQ@33958,4H9WY@91061,COG1126@1,COG1126@2	NA|NA|NA	E	ABC transporter, ATP-binding protein
PAPOILPD_00504	390333.Ldb0165	1.5e-110	406.4	Lactobacillaceae				ko:K19220,ko:K19224,ko:K21471					ko00000,ko01000,ko01002,ko01011		CBM50		Bacteria	1VG0Z@1239,3F50V@33958,4HBE9@91061,COG0791@1,COG0791@2,COG1388@1,COG1388@2	NA|NA|NA	M	NlpC P60 family protein
PAPOILPD_00505	353496.LBU_0120	5.8e-174	616.7	Lactobacillaceae													Bacteria	1V4V2@1239,3F4P0@33958,4HI4X@91061,COG1403@1,COG1403@2	NA|NA|NA	L	HNH nucleases
PAPOILPD_00506	390333.Ldb0163	5.3e-15	85.9	Lactobacillaceae													Bacteria	1U6MZ@1239,29PIJ@1,30AGQ@2,3F868@33958,4IGEU@91061	NA|NA|NA		
PAPOILPD_00507	390333.Ldb0162	7.6e-203	713.0	Lactobacillaceae	ybiR	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944											Bacteria	1TQCH@1239,3F4CJ@33958,4HEW7@91061,COG1055@1,COG1055@2	NA|NA|NA	P	Citrate transporter
PAPOILPD_00508	353496.LBU_0118	1.8e-93	348.6	Lactobacillaceae	lemA			ko:K03744					ko00000				Bacteria	1V4SV@1239,3FBKP@33958,4IR1I@91061,COG1704@1,COG1704@2	NA|NA|NA	S	LemA family
PAPOILPD_00509	353496.LBU_0117	4.2e-140	504.2	Lactobacillaceae	htpX			ko:K03799		M00743			ko00000,ko00002,ko01000,ko01002				Bacteria	1TP23@1239,3F40Z@33958,4HB11@91061,COG0501@1,COG0501@2	NA|NA|NA	O	Belongs to the peptidase M48B family
PAPOILPD_00510	1033837.WANG_1084	7.9e-08	62.4	Lactobacillaceae													Bacteria	1UZVA@1239,3F4KP@33958,4HH09@91061,COG3039@1,COG3039@2	NA|NA|NA	L	An automated process has identified a potential problem with this gene model
PAPOILPD_00513	575605.ACQN01000003_gene562	2.1e-26	126.3	Lactobacillaceae	ropB												Bacteria	1UUY5@1239,3F7J8@33958,4I403@91061,COG1396@1,COG1396@2	NA|NA|NA	K	Helix-turn-helix domain
PAPOILPD_00514	353496.LBU_0110	1.2e-121	442.6	Lactobacillaceae													Bacteria	1VCUV@1239,3F48T@33958,4HGUV@91061,COG2207@1,COG2207@2	NA|NA|NA	K	helix_turn_helix, arabinose operon control protein
PAPOILPD_00515	353496.LBU_0110	2.3e-13	80.5	Lactobacillaceae													Bacteria	1VCUV@1239,3F48T@33958,4HGUV@91061,COG2207@1,COG2207@2	NA|NA|NA	K	helix_turn_helix, arabinose operon control protein
PAPOILPD_00516	390333.Ldb0152	1.9e-267	927.9	Lactobacillaceae	emrY												Bacteria	1VSW8@1239,3F4AW@33958,4HUQC@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00517	353496.LBU_0108	1.5e-250	871.7	Lactobacillaceae	cbiO1			ko:K05776,ko:K16785,ko:K16786,ko:K16787	ko02010,map02010	M00189,M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1UI2R@1239,3F3WM@33958,4ISG8@91061,COG0488@1,COG0488@2	NA|NA|NA	S	ABC transporter, ATP-binding protein
PAPOILPD_00518	353496.LBU_0107	5.7e-110	403.7	Lactobacillaceae				ko:K16785	ko02010,map02010	M00582			ko00000,ko00001,ko00002,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1V2VE@1239,3FBE3@33958,4IPQA@91061,COG0619@1,COG0619@2	NA|NA|NA	P	Cobalt transport protein
PAPOILPD_00519	353496.LBU_0104	3.7e-55	220.7	Lactobacillaceae	pdxH			ko:K07006					ko00000				Bacteria	1VW4G@1239,3F6IW@33958,4HW37@91061,COG3576@1,COG3576@2	NA|NA|NA	S	Pyridoxamine 5'-phosphate oxidase
PAPOILPD_00522	1293597.BN147_07415	9.4e-58	230.3	Lactobacillaceae													Bacteria	1UKEE@1239,2EKN1@1,33EBR@2,3F83G@33958,4IV3A@91061	NA|NA|NA		
PAPOILPD_00523	1293597.BN147_07420	8.6e-44	184.1	Lactobacillaceae													Bacteria	1UUY5@1239,3F7J8@33958,4I403@91061,COG1396@1,COG1396@2	NA|NA|NA	K	Helix-turn-helix domain
PAPOILPD_00524	353496.LBU_0101	1.2e-80	305.8	Lactobacillaceae	rlmH		2.1.1.177	ko:K00783					ko00000,ko01000,ko03009				Bacteria	1V3JM@1239,3F3YX@33958,4HFP8@91061,COG1576@1,COG1576@2	NA|NA|NA	J	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PAPOILPD_00525	353496.LBU_0100	2.1e-153	548.9	Lactobacillaceae	htrA	GO:0008150,GO:0009266,GO:0009628,GO:0050896	3.4.21.107	ko:K04691,ko:K04771	ko01503,ko02020,map01503,map02020	M00728			ko00000,ko00001,ko00002,ko01000,ko01002,ko03110				Bacteria	1TRM8@1239,3F45X@33958,4HA31@91061,COG0265@1,COG0265@2	NA|NA|NA	O	serine protease
PAPOILPD_00526	353496.LBU_0099	4.8e-148	530.4	Lactobacillaceae	vicX		3.1.26.11	ko:K00784	ko03013,map03013				ko00000,ko00001,ko01000,ko03016				Bacteria	1TQ8E@1239,3F3S4@33958,4HAKD@91061,COG1235@1,COG1235@2	NA|NA|NA	S	domain protein
PAPOILPD_00527	353496.LBU_0098	3.5e-138	497.7	Lactobacillaceae	yycI												Bacteria	1V1FW@1239,3F3PV@33958,4HFWZ@91061,COG4853@1,COG4853@2	NA|NA|NA	S	YycH protein
PAPOILPD_00528	390333.Ldb0137	1.9e-236	825.1	Lactobacillaceae	yycH												Bacteria	1V32Y@1239,3F4HR@33958,4HG2Q@91061,COG4863@1,COG4863@2	NA|NA|NA	S	YycH protein
PAPOILPD_00529	390333.Ldb0136	0.0	1090.1	Lactobacillaceae	vicK		2.7.13.3	ko:K07652	ko02020,map02020	M00459			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1TQ1H@1239,3F45G@33958,4HA52@91061,COG5002@1,COG5002@2	NA|NA|NA	T	Histidine kinase
PAPOILPD_00530	353496.LBU_0095	1.9e-130	471.9	Lactobacillaceae													Bacteria	1TPQG@1239,3F4FB@33958,4HA8Q@91061,COG0745@1,COG0745@2	NA|NA|NA	K	response regulator
PAPOILPD_00532	353496.LBU_0094	1.1e-144	519.2	Lactobacillaceae	arbV		2.3.1.51	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R02241,R09381	RC00004,RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1V9P5@1239,3F4RC@33958,4IPQB@91061,COG0204@1,COG0204@2	NA|NA|NA	I	Acyl-transferase
PAPOILPD_00533	353496.LBU_0093	1.4e-153	548.9	Lactobacillaceae	arbx												Bacteria	1UY4M@1239,3F4YZ@33958,4IEY6@91061,COG1442@1,COG1442@2	NA|NA|NA	M	Glycosyl transferase family 8
PAPOILPD_00534	1293597.BN147_07495	3.5e-94	350.9	Lactobacillaceae	arbZ												Bacteria	1V2F4@1239,3F5FU@33958,4IF2T@91061,COG0204@1,COG0204@2	NA|NA|NA	I	Phosphate acyltransferases
PAPOILPD_00535	1293597.BN147_07495	1.7e-62	245.0	Lactobacillaceae	arbZ												Bacteria	1V2F4@1239,3F5FU@33958,4IF2T@91061,COG0204@1,COG0204@2	NA|NA|NA	I	Phosphate acyltransferases
PAPOILPD_00536	1293597.BN147_08530	7.5e-247	859.4	Lactobacillaceae													Bacteria	1TPT3@1239,3F882@33958,4HFAW@91061,COG1403@1,COG1403@2	NA|NA|NA	V	RRXRR protein
PAPOILPD_00537	1293597.BN147_02470	1.8e-55	222.2	Lactobacillaceae													Bacteria	1TSQQ@1239,3F73Z@33958,4HJJ7@91061,COG0110@1,COG0110@2	NA|NA|NA	S	transferase hexapeptide repeat
PAPOILPD_00538	353496.LBU_0973	1.6e-114	418.7	Lactobacillaceae				ko:K06889					ko00000				Bacteria	1TPW7@1239,3F5IC@33958,4HEFQ@91061,COG1073@1,COG1073@2	NA|NA|NA	S	Hydrolases of the alpha beta superfamily
PAPOILPD_00539	353496.LBU_0975	1.4e-113	415.6	Lactobacillaceae	ylbE												Bacteria	1TQFS@1239,3F521@33958,4HDA2@91061,COG0702@1,COG0702@2	NA|NA|NA	GM	NAD(P)H-binding
PAPOILPD_00540	353496.LBU_0976	2.7e-43	181.0	Bacteria				ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	COG1132@1,COG1132@2	NA|NA|NA	V	(ABC) transporter
PAPOILPD_00541	353496.LBU_0977	5.3e-97	361.3	Firmicutes				ko:K02471,ko:K06147,ko:K18890	ko02010,map02010	M00707			ko00000,ko00001,ko00002,ko02000	3.A.1.106,3.A.1.106.13,3.A.1.106.5,3.A.1.109,3.A.1.203.11,3.A.1.203.4,3.A.1.21			Bacteria	1TPTK@1239,COG1132@1,COG1132@2	NA|NA|NA	V	Psort location CytoplasmicMembrane, score 10.00
PAPOILPD_00542	353496.LBU_0978	3e-71	274.6	Firmicutes				ko:K02068,ko:K02071	ko02010,map02010	M00211,M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	1UM82@1239,COG1132@1,COG1132@2	NA|NA|NA	V	Psort location CytoplasmicMembrane, score
PAPOILPD_00543	591001.Acfer_0882	3e-43	181.8	Negativicutes				ko:K06147,ko:K18889	ko02010,map02010	M00707			ko00000,ko00001,ko00002,ko02000	3.A.1.106,3.A.1.106.13,3.A.1.106.5,3.A.1.109,3.A.1.21			Bacteria	1UM82@1239,4H2J0@909932,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter transmembrane region
PAPOILPD_00544	1069534.LRC_09920	1.8e-31	141.7	Lactobacillaceae	cas2			ko:K09951					ko00000,ko02048				Bacteria	1VEH4@1239,3F7U4@33958,4HNYR@91061,COG3512@1,COG3512@2	NA|NA|NA	L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAPOILPD_00545	1069534.LRC_09930	9.2e-95	353.6	Lactobacillaceae	cas1			ko:K15342					ko00000,ko02048,ko03400				Bacteria	1TT0J@1239,3F3RW@33958,4HC5E@91061,COG1518@1,COG1518@2	NA|NA|NA	L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAPOILPD_00546	1069534.LRC_09940	2.4e-78	299.3	Lactobacillaceae	csm5	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944		ko:K19140					ko00000,ko02048				Bacteria	1V8JA@1239,3F9HQ@33958,4HVKH@91061,COG1332@1,COG1332@2	NA|NA|NA	L	RAMP superfamily
PAPOILPD_00547	1069534.LRC_09950	1.4e-90	339.7	Lactobacillaceae	csm4			ko:K19139					ko00000,ko02048				Bacteria	1V4UZ@1239,3F9TE@33958,4HWEB@91061,COG1567@1,COG1567@2	NA|NA|NA	L	CRISPR-associated RAMP protein, Csm4 family
PAPOILPD_00548	1069534.LRC_09960	1.2e-80	306.2	Lactobacillaceae	csm3			ko:K09002					ko00000,ko02048				Bacteria	1V3DM@1239,3F9AP@33958,4HPB8@91061,COG1337@1,COG1337@2	NA|NA|NA	L	RAMP superfamily
PAPOILPD_00549	889204.HMPREF9423_0551	7.3e-22	110.5	Firmicutes	csm2			ko:K19138					ko00000,ko02048				Bacteria	1VGBY@1239,COG1421@1,COG1421@2	NA|NA|NA	L	CRISPR-associated protein Csm2 family
PAPOILPD_00550	1069534.LRC_09980	3.6e-228	798.1	Lactobacillaceae	csm1	GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K07016					ko00000,ko02048				Bacteria	1TRW5@1239,3F973@33958,4HM8F@91061,COG1353@1,COG1353@2	NA|NA|NA	S	CRISPR-associated protein Csm1 family
PAPOILPD_00551	1069534.LRC_09990	9.7e-58	230.3	Lactobacillaceae	cas6			ko:K19091					ko00000,ko01000,ko02048				Bacteria	1V7VJ@1239,3FAFD@33958,4HZ1B@91061,COG5551@1,COG5551@2	NA|NA|NA	S	Pfam:DUF2276
PAPOILPD_00552	390333.Ldb1145	1.7e-179	635.2	Lactobacillaceae													Bacteria	1VQ4B@1239,2A8RI@1,30XU8@2,3F4H8@33958,4IJHJ@91061	NA|NA|NA		
PAPOILPD_00553	390333.Ldb1145	9.5e-172	609.4	Lactobacillaceae													Bacteria	1VQ4B@1239,2A8RI@1,30XU8@2,3F4H8@33958,4IJHJ@91061	NA|NA|NA		
PAPOILPD_00554	390333.Ldb1146	3.1e-278	963.8	Lactobacillaceae													Bacteria	1TUPQ@1239,2C0IE@1,2Z7YA@2,3F4HC@33958,4IEVE@91061	NA|NA|NA		
PAPOILPD_00555	390333.Ldb1146	0.0	1486.5	Lactobacillaceae													Bacteria	1TUPQ@1239,2C0IE@1,2Z7YA@2,3F4HC@33958,4IEVE@91061	NA|NA|NA		
PAPOILPD_00556	390333.Ldb1147	6.3e-171	606.7	Lactobacillaceae			1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1TPCX@1239,3FB6D@33958,4HUAD@91061,COG1052@1,COG1052@2	NA|NA|NA	CH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAPOILPD_00557	353496.LBU_0980	2e-74	285.0	Lactobacillaceae													Bacteria	1VF1A@1239,3F705@33958,4HH6N@91061,COG1846@1,COG1846@2	NA|NA|NA	K	Transcriptional regulator, MarR family
PAPOILPD_00558	390333.Ldb1149	7.9e-305	1052.4	Lactobacillaceae	XK27_09600			ko:K06147,ko:K18891	ko02010,map02010	M00708			ko00000,ko00001,ko00002,ko02000	3.A.1.106,3.A.1.109,3.A.1.135,3.A.1.21			Bacteria	1TP0B@1239,3F3SP@33958,4H9SC@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_00559	353496.LBU_0982	0.0	1088.9	Lactobacillaceae				ko:K06147,ko:K18892	ko02010,map02010	M00708			ko00000,ko00001,ko00002,ko02000	3.A.1.106,3.A.1.109,3.A.1.135,3.A.1.21			Bacteria	1UNRI@1239,3FC4R@33958,4HFD4@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter transmembrane region
PAPOILPD_00560	390333.Ldb1151	1.5e-44	185.3	Lactobacillaceae													Bacteria	1VES3@1239,3F88S@33958,4HNRE@91061,COG0607@1,COG0607@2	NA|NA|NA	P	Rhodanese Homology Domain
PAPOILPD_00563	397291.C804_03406	2.3e-19	101.3	unclassified Lachnospiraceae													Bacteria	1TNZN@1239,247YX@186801,27JUF@186928,COG0534@1,COG0534@2	NA|NA|NA	V	MatE
PAPOILPD_00564	1203606.HMPREF1526_03140	1.6e-61	242.7	Clostridiaceae													Bacteria	1TNZN@1239,247YX@186801,36DT9@31979,COG0534@1,COG0534@2	NA|NA|NA	V	Mate efflux family protein
PAPOILPD_00566	525365.HMPREF0548_1188	4.1e-53	214.5	Lactobacillaceae			1.3.1.9	ko:K02371	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00083	R04429,R04724,R04955,R04958,R04961,R04966,R04969,R07765	RC00052,RC00076	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1U68W@1239,3F7BV@33958,4IG01@91061,COG2070@1,COG2070@2	NA|NA|NA	S	2-Nitropropane dioxygenase
PAPOILPD_00567	1235802.C823_02946	3.8e-138	499.2	Eubacteriaceae													Bacteria	1TRR1@1239,24BHM@186801,25V75@186806,COG4485@1,COG4485@2	NA|NA|NA	S	CytoplasmicMembrane, score 9.99
PAPOILPD_00568	390333.Ldb1157	1.3e-41	175.3	Bacteria	yjdJ			ko:K06975					ko00000				Bacteria	COG2388@1,COG2388@2	NA|NA|NA	S	GCN5-related N-acetyl-transferase
PAPOILPD_00569	353496.LBU_0988	8.8e-133	479.6	Lactobacillaceae	gph		3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130		R01334	RC00017	ko00000,ko00001,ko01000				Bacteria	1V3YI@1239,3F3M8@33958,4I3F2@91061,COG0546@1,COG0546@2	NA|NA|NA	S	HAD-hyrolase-like
PAPOILPD_00571	1423790.BN53_06155	1.4e-15	88.6	Lactobacillaceae	lysR7												Bacteria	1TQYZ@1239,3FBIC@33958,4IQQE@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_00572	575605.ACQN01000020_gene730	3.1e-32	145.2	Lactobacillaceae	lysR7												Bacteria	1V09D@1239,3F6R1@33958,4IQPY@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_00573	641146.HMPREF9020_00461	6.1e-55	221.5	Actinobacteria													Bacteria	2IPR0@201174,COG0732@1,COG0732@2	NA|NA|NA	V	type I restriction modification DNA specificity domain
PAPOILPD_00574	390333.Ldb1054	3.3e-169	600.9	Lactobacillaceae													Bacteria	1TPE1@1239,3FC9T@33958,4HDHJ@91061,COG0582@1,COG0582@2	NA|NA|NA	L	Belongs to the 'phage' integrase family
PAPOILPD_00575	1196029.ALIM01000001_gene4946	3e-93	349.0	Bacillus			3.1.21.3	ko:K01154					ko00000,ko01000,ko02048				Bacteria	1TP5N@1239,1ZRN5@1386,4IQS7@91061,COG0732@1,COG0732@2	NA|NA|NA	V	Type I restriction modification DNA specificity domain
PAPOILPD_00576	390333.Ldb1052	1.6e-272	944.9	Lactobacillaceae	hsdM		2.1.1.72	ko:K03427					ko00000,ko01000,ko02048				Bacteria	1TPGZ@1239,3F4HM@33958,4HA1J@91061,COG0286@1,COG0286@2	NA|NA|NA	V	type I restriction-modification system
PAPOILPD_00577	390333.Ldb1051	0.0	1906.3	Lactobacillaceae	hsdR		3.1.21.3	ko:K01153					ko00000,ko01000,ko02048				Bacteria	1TP7S@1239,3F50Q@33958,4HB5A@91061,COG0610@1,COG0610@2	NA|NA|NA	V	Subunit R is required for both nuclease and ATPase activities, but not for modification
PAPOILPD_00578	353496.LBU_0917	3.1e-105	387.9	Lactobacillaceae				ko:K04763					ko00000,ko03036				Bacteria	1V2RX@1239,3F4SP@33958,4IEJ7@91061,COG0582@1,COG0582@2	NA|NA|NA	L	Integrase
PAPOILPD_00579	1293597.BN147_02535	5.1e-65	253.8	Lactobacillaceae	XK27_03610												Bacteria	1V77V@1239,3F9VM@33958,4IR7F@91061,COG0454@1,COG0456@2	NA|NA|NA	K	Acetyltransferase (GNAT) domain
PAPOILPD_00580	1293597.BN147_02540	6.8e-138	496.9	Lactobacillaceae	cylA			ko:K01990,ko:K11050	ko02010,map02010	M00254,M00298			ko00000,ko00001,ko00002,ko02000	3.A.1,3.A.1.130			Bacteria	1TPMQ@1239,3FBDQ@33958,4IPMF@91061,COG1131@1,COG1131@2	NA|NA|NA	V	ABC transporter
PAPOILPD_00581	1293597.BN147_02545	4.6e-104	384.4	Lactobacillaceae	cylB			ko:K11051	ko02010,map02010	M00298			ko00000,ko00001,ko00002,ko02000	3.A.1.130			Bacteria	1TSH0@1239,3FCEU@33958,4HJ97@91061,COG0842@1,COG0842@2	NA|NA|NA	U	ABC-2 type transporter
PAPOILPD_00582	353496.LBU_0920	2.6e-77	294.7	Lactobacillaceae													Bacteria	1V4J6@1239,2CAVT@1,304CC@2,3F79F@33958,4HXAR@91061	NA|NA|NA	S	Psort location CytoplasmicMembrane, score
PAPOILPD_00583	353496.LBU_0921	1.2e-63	249.2	Lactobacillaceae													Bacteria	1W4GP@1239,28WWC@1,2ZIVN@2,3F5SC@33958,4I0DB@91061	NA|NA|NA		
PAPOILPD_00584	353496.LBU_0922	2.5e-68	264.6	Lactobacillaceae	arsC		1.20.4.1	ko:K03741					ko00000,ko01000				Bacteria	1V3JW@1239,3F7YV@33958,4HH49@91061,COG0394@1,COG0394@2	NA|NA|NA	T	Low molecular weight phosphotyrosine protein phosphatase
PAPOILPD_00585	390333.Ldb1088	1.4e-128	465.7	Lactobacillaceae	cysA			ko:K02003		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TNZG@1239,3F3MG@33958,4H9UT@91061,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_00586	390333.Ldb1089	0.0	1126.7	Lactobacillaceae				ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TR2D@1239,3F45H@33958,4HAZG@91061,COG0577@1,COG0577@2	NA|NA|NA	V	FtsX-like permease family
PAPOILPD_00587	390333.Ldb1095	6.8e-273	946.0	Lactobacillaceae			1.3.5.4	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	M00009,M00011,M00150,M00173	R02164	RC00045	ko00000,ko00001,ko00002,ko01000				Bacteria	1TT1Q@1239,3F4DI@33958,4IPXT@91061,COG1053@1,COG1053@2	NA|NA|NA	C	FAD binding domain
PAPOILPD_00588	1423814.HMPREF0549_1529	1.3e-12	78.2	Lactobacillaceae	ps301												Bacteria	1UK2I@1239,3F4EH@33958,4ITGB@91061,COG2944@1,COG2944@2,COG3600@1,COG3600@2	NA|NA|NA	K	Protein of unknown function (DUF4065)
PAPOILPD_00589	1423814.HMPREF0549_1528	3.3e-09	67.0	Lactobacillaceae													Bacteria	1VQGF@1239,2ES6D@1,33JR5@2,3F76A@33958,4HSAN@91061	NA|NA|NA	S	Motility quorum-sensing regulator, toxin of MqsA
PAPOILPD_00591	353496.LBU_0928	3.3e-103	380.9	Lactobacillaceae	ydaF			ko:K03817					ko00000,ko01000,ko03009				Bacteria	1V3NE@1239,3F6YW@33958,4HG1N@91061,COG1670@1,COG1670@2	NA|NA|NA	J	Acetyltransferase (GNAT) domain
PAPOILPD_00592	353496.LBU_0929	1.5e-76	292.4	Lactobacillaceae													Bacteria	1U7P4@1239,29Q8E@1,30B7F@2,3F9YX@33958,4IHKD@91061	NA|NA|NA	S	SLAP domain
PAPOILPD_00593	353496.LBU_0930	1.9e-109	401.7	Lactobacillaceae	ppiB	GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564	5.2.1.8	ko:K01802,ko:K03768					ko00000,ko01000,ko03110				Bacteria	1TRHW@1239,3F3TI@33958,4H9V0@91061,COG0652@1,COG0652@2	NA|NA|NA	G	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PAPOILPD_00594	353496.LBU_0931	1.6e-219	768.5	Lactobacillaceae	patA		2.6.1.1	ko:K00812,ko:K00841,ko:K10907	ko00220,ko00250,ko00270,ko00300,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00300,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	M00525	R00355,R00694,R00734,R00896,R02433,R02619,R04467,R05052	RC00006	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	1TP0J@1239,3F3MX@33958,4HA13@91061,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase
PAPOILPD_00595	353496.LBU_0932	3.3e-141	507.7	Lactobacillaceae	dapB	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016020,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0030312,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0048037,GO:0050661,GO:0050662,GO:0051287,GO:0055114,GO:0070402,GO:0070404,GO:0071704,GO:0071944,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.17.1.8	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R04198,R04199	RC00478	ko00000,ko00001,ko00002,ko01000			iJN678.dapB,iNJ661.Rv2773c,iYO844.BSU22490	Bacteria	1TR9D@1239,3F3MA@33958,4HA5X@91061,COG0289@1,COG0289@2	NA|NA|NA	E	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
PAPOILPD_00596	353496.LBU_0933	4.4e-169	600.5	Lactobacillaceae	dapA		4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPCK@1239,3F4UH@33958,4H9K9@91061,COG0329@1,COG0329@2	NA|NA|NA	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PAPOILPD_00597	353496.LBU_0934	1.1e-217	762.3	Lactobacillaceae	hipO	GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0050118,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	3.5.1.47	ko:K05823,ko:K21613	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	M00525	R02733	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000,ko01002				Bacteria	1TPD7@1239,3F419@33958,4H9SG@91061,COG1473@1,COG1473@2	NA|NA|NA	E	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
PAPOILPD_00598	353496.LBU_0935	9.5e-71	273.5	Lactobacillaceae	dapD	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008666,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016749,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.117,2.3.1.89	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	M00016,M00525	R04364,R04365	RC00004,RC01136	ko00000,ko00001,ko00002,ko01000			iSbBS512_1146.SbBS512_E0158,iYO844.BSU14180	Bacteria	1TQUJ@1239,3F3U0@33958,4H9KY@91061,COG2171@1,COG2171@2	NA|NA|NA	E	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
PAPOILPD_00599	353496.LBU_0936	1.2e-250	872.1	Lactobacillaceae	lysC	GO:0000166,GO:0003674,GO:0003824,GO:0004072,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006553,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017076,GO:0019202,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.4	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000			iYO844.BSU03790	Bacteria	1TPQJ@1239,3F48V@33958,4HAEP@91061,COG0527@1,COG0527@2	NA|NA|NA	E	Belongs to the aspartokinase family
PAPOILPD_00600	353496.LBU_0937	3.7e-182	644.0	Lactobacillaceae	dapF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.1.1.7	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00527	R02735	RC00302	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPMN@1239,3F4F7@33958,4HBH4@91061,COG0253@1,COG0253@2	NA|NA|NA	E	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
PAPOILPD_00602	760568.Desku_1508	3.4e-13	81.3	Peptococcaceae				ko:K07161					ko00000				Bacteria	1UTG9@1239,24FAQ@186801,261X7@186807,COG3552@1,COG3552@2	NA|NA|NA	S	Protein containing von Willebrand factor type A (VWA) domain
PAPOILPD_00603	272621.LBA1107	7.7e-175	620.2	Lactobacillaceae	gor		1.8.1.7	ko:K00383	ko00480,ko04918,map00480,map04918		R00094,R00115	RC00011	ko00000,ko00001,ko01000				Bacteria	1TS0Z@1239,3F3K2@33958,4HBYB@91061,COG1249@1,COG1249@2	NA|NA|NA	C	Glutathione reductase
PAPOILPD_00604	353496.LBU_0991	1.8e-133	481.9	Lactobacillaceae	ligA	GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360	2.7.7.7,6.5.1.2	ko:K01972,ko:K02342,ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440	M00260	R00375,R00376,R00377,R00378,R00382	RC00005,RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TRS5@1239,3F546@33958,4HFJA@91061,COG0272@1,COG0272@2,COG2176@1,COG2176@2	NA|NA|NA	L	EXOIII
PAPOILPD_00605	1293597.BN147_02620	1.7e-101	375.6	Lactobacillaceae	yyaQ												Bacteria	1V4K7@1239,3FBGT@33958,4HP2K@91061,COG2315@1,COG2315@2	NA|NA|NA	S	YjbR
PAPOILPD_00606	353496.LBU_0992	4.8e-137	493.8	Lactobacillaceae	ydcF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0016021,GO:0031224,GO:0044425,GO:0044464,GO:0071944											Bacteria	1TS1Q@1239,3F62V@33958,4I32T@91061,COG1434@1,COG1434@2	NA|NA|NA	S	Gram-negative-bacterium-type cell wall biogenesis
PAPOILPD_00607	390333.Ldb1165	1.4e-104	385.6	Lactobacillaceae	pat		2.3.1.183	ko:K03823	ko00440,ko01130,map00440,map01130		R08871,R08938	RC00004,RC00064	ko00000,ko00001,ko01000				Bacteria	1V6X5@1239,3F6R5@33958,4HIP1@91061,COG1247@1,COG1247@2	NA|NA|NA	M	Acetyltransferase (GNAT) domain
PAPOILPD_00608	353496.LBU_0994	3.2e-130	471.1	Lactobacillaceae			2.1.1.72	ko:K03427					ko00000,ko01000,ko02048				Bacteria	1V86D@1239,3F7IT@33958,4HJKH@91061,COG0286@1,COG0286@2	NA|NA|NA	V	site-specific DNA-methyltransferase (adenine-specific) activity
PAPOILPD_00609	353496.LBU_0995	0.0	2620.9	Lactobacillaceae													Bacteria	1U2DR@1239,3F4F5@33958,4HBX2@91061,COG1061@1,COG1061@2	NA|NA|NA	L	Type III restriction enzyme, res subunit
PAPOILPD_00610	339671.Asuc_0825	3.7e-32	144.8	Bacteria													Bacteria	COG3177@1,COG3177@2	NA|NA|NA	D	Filamentation induced by cAMP protein fic
PAPOILPD_00611	390333.Ldb1170	1.4e-150	538.9	Lactobacillaceae			3.4.17.13	ko:K01297					ko00000,ko01000,ko01002,ko01011				Bacteria	1TRBB@1239,3F71A@33958,4HG3E@91061,COG1619@1,COG1619@2	NA|NA|NA	V	LD-carboxypeptidase
PAPOILPD_00612	353496.LBU_1000	1.7e-260	904.8	Lactobacillaceae	rsmF		2.1.1.176	ko:K03500					ko00000,ko01000,ko03009				Bacteria	1TPGQ@1239,3F492@33958,4HCHQ@91061,COG0144@1,COG0144@2	NA|NA|NA	J	NOL1 NOP2 sun family protein
PAPOILPD_00613	353496.LBU_1001	3.8e-171	607.4	Lactobacillaceae													Bacteria	1VNCY@1239,2EPHD@1,33H40@2,3F495@33958,4HYY7@91061	NA|NA|NA		
PAPOILPD_00614	390333.Ldb0854	8.4e-224	782.7	Lactobacillaceae													Bacteria	1TT97@1239,3F3ND@33958,4HAIA@91061,COG0457@1,COG0457@2	NA|NA|NA	S	Tetratricopeptide repeat protein
PAPOILPD_00615	390333.Ldb0853	2.6e-40	171.0	Lactobacillaceae	hup			ko:K03530					ko00000,ko03032,ko03036,ko03400				Bacteria	1V9XQ@1239,3F6YN@33958,4HKF2@91061,COG0776@1,COG0776@2	NA|NA|NA	L	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
PAPOILPD_00616	353496.LBU_0730	2.4e-245	854.4	Lactobacillaceae	der	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944	1.1.1.399,1.1.1.95	ko:K00058,ko:K03977	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko03009,ko04147				Bacteria	1TPNM@1239,3F4V0@33958,4HAJ6@91061,COG1160@1,COG1160@2	NA|NA|NA	S	GTPase that plays an essential role in the late steps of ribosome biogenesis
PAPOILPD_00617	353496.LBU_0729	2.9e-144	518.1	Lactobacillaceae	rpsA		1.17.7.4	ko:K02945,ko:K03527	ko00900,ko01100,ko01110,ko01130,ko03010,map00900,map01100,map01110,map01130,map03010	M00096,M00178	R05884,R08210	RC01137,RC01487	br01610,ko00000,ko00001,ko00002,ko01000,ko03011				Bacteria	1TQ9N@1239,3F4DQ@33958,4H9PX@91061,COG0539@1,COG0539@2	NA|NA|NA	J	Ribosomal protein S1
PAPOILPD_00618	353496.LBU_0728	3.3e-102	377.9	Lactobacillaceae	cmk	GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0015939,GO:0015940,GO:0015949,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	1.17.7.4,2.5.1.19,2.7.1.26,2.7.4.25,2.7.7.2,6.3.2.1	ko:K00800,ko:K00945,ko:K02945,ko:K03527,ko:K03977,ko:K11753,ko:K13799	ko00240,ko00400,ko00410,ko00740,ko00770,ko00900,ko01100,ko01110,ko01130,ko01230,ko03010,map00240,map00400,map00410,map00740,map00770,map00900,map01100,map01110,map01130,map01230,map03010	M00022,M00052,M00096,M00119,M00125,M00178	R00158,R00161,R00512,R00549,R01665,R02473,R03460,R05884,R08210	RC00002,RC00017,RC00096,RC00141,RC00350,RC01137,RC01487	br01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011			iPC815.YPO1391,iSDY_1059.SDY_2348	Bacteria	1V3IA@1239,3F3W4@33958,4HFZE@91061,COG0283@1,COG0283@2	NA|NA|NA	F	Belongs to the cytidylate kinase family. Type 1 subfamily
PAPOILPD_00620	390333.Ldb0848	1.2e-113	416.0	Lactobacillaceae													Bacteria	1V4BW@1239,3F4HD@33958,4HHFT@91061,COG3601@1,COG3601@2	NA|NA|NA	U	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
PAPOILPD_00621	353496.LBU_0725	2.6e-129	468.0	Lactobacillaceae	rluB	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.19,5.4.99.21,5.4.99.22	ko:K06178,ko:K06182,ko:K06183					ko00000,ko01000,ko03009				Bacteria	1TP68@1239,3F402@33958,4H9MU@91061,COG1187@1,COG1187@2	NA|NA|NA	J	Belongs to the pseudouridine synthase RsuA family
PAPOILPD_00622	353496.LBU_0724	9.4e-104	382.9	Lactobacillaceae	scpB	GO:0003674,GO:0005488,GO:0005515,GO:0042802		ko:K06024					ko00000,ko03036				Bacteria	1V6HI@1239,3F5RN@33958,4HIQ0@91061,COG1386@1,COG1386@2	NA|NA|NA	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PAPOILPD_00623	353496.LBU_0723	2.3e-128	464.9	Lactobacillaceae	scpA	GO:0003674,GO:0005488,GO:0005515,GO:0042802		ko:K05896					ko00000,ko03036				Bacteria	1TRW3@1239,3F4FS@33958,4HA6Q@91061,COG1354@1,COG1354@2	NA|NA|NA	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
PAPOILPD_00624	353496.LBU_0722	7.5e-61	239.6	Lactobacillaceae	ribT			ko:K02859					ko00000				Bacteria	1VAD7@1239,3F7QC@33958,4HKR2@91061,COG0454@1,COG0456@2	NA|NA|NA	K	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PAPOILPD_00625	390333.Ldb0843	8.6e-162	576.2	Lactobacillaceae	xerD			ko:K03733,ko:K04763					ko00000,ko03036				Bacteria	1TQRG@1239,3F3V9@33958,4HAEX@91061,COG4974@1,COG4974@2	NA|NA|NA	D	recombinase XerD
PAPOILPD_00626	353496.LBU_0720	4.5e-163	580.5	Lactobacillaceae	cvfB			ko:K00243					ko00000				Bacteria	1TQ1Z@1239,3F44W@33958,4HDAZ@91061,COG2996@1,COG2996@2	NA|NA|NA	S	S1 domain
PAPOILPD_00627	353496.LBU_0719	6e-65	253.4	Lactobacillaceae													Bacteria	1V8A9@1239,3F5JA@33958,4HJ67@91061,COG1835@1,COG1835@2	NA|NA|NA	I	Acyltransferase family
PAPOILPD_00628	353496.LBU_0717	0.0	1082.8	Lactobacillaceae	pyk	GO:0001871,GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006116,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009266,GO:0009408,GO:0009628,GO:0009986,GO:0009987,GO:0016043,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0022607,GO:0030246,GO:0030247,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:2001065	2.7.1.40,2.7.7.4	ko:K00873,ko:K00958	ko00010,ko00230,ko00261,ko00450,ko00620,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00261,map00450,map00620,map00920,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	M00001,M00002,M00049,M00050,M00176,M00596	R00200,R00430,R00529,R01138,R01858,R02320,R04929	RC00002,RC00015,RC02809,RC02889	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147			iECO103_1326.ECO103_1819,iPC815.YPO2393	Bacteria	1TPGG@1239,3F3JU@33958,4H9VY@91061,COG0469@1,COG0469@2	NA|NA|NA	G	Belongs to the pyruvate kinase family
PAPOILPD_00629	353496.LBU_0716	1.4e-178	632.1	Lactobacillaceae	pfkA	GO:0003674,GO:0003824,GO:0003872,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006116,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061615,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.1.11,2.7.1.90	ko:K00850,ko:K21071	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	M00001,M00345	R00756,R00764,R02073,R03236,R03237,R03238,R03239,R04779	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019			iYO844.BSU29190	Bacteria	1TPF4@1239,3F4CC@33958,4HAPN@91061,COG0205@1,COG0205@2	NA|NA|NA	F	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
PAPOILPD_00630	353496.LBU_0715	0.0	2214.9	Lactobacillaceae	dnaE		2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TPYG@1239,3F4AM@33958,4H9T3@91061,COG0587@1,COG0587@2	NA|NA|NA	L	DNA polymerase
PAPOILPD_00631	353496.LBU_0714	1.4e-27	128.3	Lactobacillaceae													Bacteria	1U6JJ@1239,29PGH@1,30AEN@2,3F81E@33958,4IGC1@91061	NA|NA|NA	S	Protein of unknown function (DUF2929)
PAPOILPD_00632	1293597.BN147_02200	5.6e-168	597.0	Lactobacillaceae	proB	GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.11	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	M00015	R00239	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPG6@1239,3F4E1@33958,4HA9B@91061,COG0263@1,COG0263@2	NA|NA|NA	F	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PAPOILPD_00633	1293597.BN147_02205	2.9e-176	624.8	Lactobacillaceae	proA	GO:0003674,GO:0003824,GO:0004350,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0018130,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0055114,GO:0055129,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.2.1.41	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	M00015	R03313	RC00684	ko00000,ko00001,ko00002,ko01000			iB21_1397.B21_00243,iECBD_1354.ECBD_3376,iECB_1328.ECB_00240,iECD_1391.ECD_00240,iLJ478.TM0293,iYL1228.KPN_00280,iYO844.BSU13130	Bacteria	1TQ9V@1239,3F3W7@33958,4HB7B@91061,COG0014@1,COG0014@2	NA|NA|NA	E	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PAPOILPD_00634	1214217.ALNF01000014_gene1484	1.9e-77	295.8	Streptococcus suis	proC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.5.1.2	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	M00015	R01248,R01251,R03291,R03293	RC00054,RC00083	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_0899,iIT341.HP1158	Bacteria	1TP1E@1239,1WT0G@1307,4H9RV@91061,COG0345@1,COG0345@2	NA|NA|NA	E	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PAPOILPD_00635	353496.LBU_0711	2.9e-45	188.0	Lactobacillaceae	gmuR			ko:K03492,ko:K03710					ko00000,ko03000				Bacteria	1TTCD@1239,3F4DA@33958,4HEXQ@91061,COG2188@1,COG2188@2	NA|NA|NA	K	UbiC transcription regulator-associated domain protein
PAPOILPD_00636	353496.LBU_0709	3.2e-98	364.4	Lactobacillaceae	ywlG												Bacteria	1V3H0@1239,3F66D@33958,4HH6F@91061,COG4475@1,COG4475@2	NA|NA|NA	S	Belongs to the UPF0340 family
PAPOILPD_00638	353496.LBU_0708	8.6e-27	125.6	Lactobacillaceae													Bacteria	1V8QF@1239,2DNW7@1,32ZGM@2,3F601@33958,4HIIB@91061	NA|NA|NA		
PAPOILPD_00639	353496.LBU_0707	0.0	1189.5	Lactobacillaceae													Bacteria	1TPFZ@1239,3FCEQ@33958,4H9YP@91061,COG0553@1,COG0553@2	NA|NA|NA	L	SNF2 family N-terminal domain
PAPOILPD_00640	353496.LBU_0706	2.1e-304	1050.8	Lactobacillaceae	cpdB		3.1.3.6,3.1.4.16	ko:K01119	ko00230,ko00240,map00230,map00240		R01562,R01877,R02148,R02370,R03537,R03538,R03929,R05135	RC00078,RC00296	ko00000,ko00001,ko01000				Bacteria	1TPV2@1239,3F45U@33958,4HC2M@91061,COG0737@1,COG0737@2	NA|NA|NA	F	Belongs to the 5'-nucleotidase family
PAPOILPD_00641	353496.LBU_0705	1e-27	128.6	Lactobacillaceae	rpmF	GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904		ko:K02911	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011,ko03029				Bacteria	1VKMZ@1239,3F7ZT@33958,4HR2Q@91061,COG0333@1,COG0333@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL32 family
PAPOILPD_00642	390333.Ldb0821	2.5e-136	491.5	Lactobacillaceae	XK27_05435		1.1.1.100	ko:K00059,ko:K07124	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1TSJ3@1239,3F41Y@33958,4HI3D@91061,COG0300@1,COG0300@2	NA|NA|NA	S	Belongs to the short-chain dehydrogenases reductases (SDR) family
PAPOILPD_00643	353496.LBU_0703	2.9e-173	614.4	Lactobacillaceae	rnz	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016891,GO:0016893,GO:0016896,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043169,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090503,GO:0140098,GO:1901360,GO:1905267	3.1.26.11	ko:K00784	ko03013,map03013				ko00000,ko00001,ko01000,ko03016				Bacteria	1TRGP@1239,3F4F1@33958,4HABM@91061,COG1234@1,COG1234@2	NA|NA|NA	J	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
PAPOILPD_00644	353496.LBU_0702	0.0	1178.7	Lactobacillaceae	oatA												Bacteria	1TPTG@1239,3F3WT@33958,4HB7R@91061,COG1835@1,COG1835@2	NA|NA|NA	I	Acyltransferase
PAPOILPD_00645	390333.Ldb0817	2.3e-240	837.8	Lactobacillaceae	obg	GO:0000003,GO:0000160,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019954,GO:0023052,GO:0030436,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035556,GO:0035639,GO:0036094,GO:0043021,GO:0043022,GO:0043167,GO:0043168,GO:0043934,GO:0044424,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0097159,GO:0097367,GO:1901265,GO:1901363		ko:K03979					ko00000,ko01000,ko03009				Bacteria	1TPX7@1239,3F4ZA@33958,4H9P8@91061,COG0536@1,COG0536@2	NA|NA|NA	S	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PAPOILPD_00646	390333.Ldb0816	0.0	1184.9	Lactobacillaceae	uvrC			ko:K03703	ko03420,map03420				ko00000,ko00001,ko03400				Bacteria	1TP4B@1239,3F3MY@33958,4H9QH@91061,COG0322@1,COG0322@2	NA|NA|NA	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
PAPOILPD_00647	353496.LBU_0698	1.3e-181	642.1	Lactobacillaceae	iunH		3.2.2.1	ko:K01239,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100		R01245,R01273,R01677,R01770,R02143	RC00033,RC00063,RC00122,RC00318,RC00485	ko00000,ko00001,ko01000				Bacteria	1TRGU@1239,3F3V1@33958,4H9TZ@91061,COG1957@1,COG1957@2	NA|NA|NA	F	inosine-uridine preferring nucleoside hydrolase
PAPOILPD_00648	353496.LBU_0697	0.0	1172.1	Lactobacillaceae	recQ	GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363	3.6.4.12	ko:K03654	ko03018,map03018				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPN5@1239,3F4PY@33958,4H9QP@91061,COG0514@1,COG0514@2	NA|NA|NA	L	ATP-dependent DNA helicase RecQ
PAPOILPD_00649	353496.LBU_0596	7.2e-186	656.4	Lactobacillaceae	ywlC	GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363	2.7.7.87,3.1.3.48	ko:K01104,ko:K07566			R10463	RC00745	ko00000,ko01000,ko03009,ko03016				Bacteria	1TP1I@1239,3F3T1@33958,4HA7W@91061,COG0009@1,COG0009@2	NA|NA|NA	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
PAPOILPD_00650	353496.LBU_0595	6.6e-156	556.6	Lactobacillaceae	prmB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009007,GO:0009008,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0032775,GO:0034641,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044728,GO:0046483,GO:0071704,GO:0090304,GO:0140096,GO:0140097,GO:1901360,GO:1901564	2.1.1.297,2.1.1.298	ko:K02493,ko:K07320			R10806	RC00003,RC03279	ko00000,ko01000,ko03009,ko03012				Bacteria	1TSMA@1239,3F460@33958,4HC6W@91061,COG2890@1,COG2890@2	NA|NA|NA	J	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
PAPOILPD_00651	353496.LBU_0594	2.1e-194	684.9	Lactobacillaceae	prfA			ko:K02835					ko00000,ko03012				Bacteria	1TQ7V@1239,3F3Q0@33958,4H9MB@91061,COG0216@1,COG0216@2	NA|NA|NA	J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PAPOILPD_00652	390333.Ldb0700	2.7e-111	407.9	Lactobacillaceae	tdk	GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657	2.7.1.21	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100		R01567,R02099,R08233	RC00002,RC00017	ko00000,ko00001,ko01000			iAF1260.b1238,iBWG_1329.BWG_1065,iECDH10B_1368.ECDH10B_1298,iECDH1ME8569_1439.ECDH1ME8569_1176,iEcDH1_1363.EcDH1_2411,iJO1366.b1238,iJR904.b1238,iPC815.YPO2176,iY75_1357.Y75_RS06470	Bacteria	1TRVM@1239,3F4UE@33958,4HA4A@91061,COG1435@1,COG1435@2	NA|NA|NA	F	thymidine kinase
PAPOILPD_00653	390333.Ldb0699	1.5e-258	898.3	Lactobacillaceae	murD		3.4.21.10,6.3.2.13,6.3.2.9	ko:K01317,ko:K01925,ko:K01928,ko:K01932	ko00300,ko00471,ko00550,ko01100,map00300,map00471,map00550,map01100		R02783,R02788	RC00064,RC00090,RC00141	ko00000,ko00001,ko01000,ko01002,ko01011,ko04131				Bacteria	1UHPI@1239,3F3TN@33958,4HVP0@91061,COG0771@1,COG0771@2	NA|NA|NA	M	Mur ligase, middle domain
PAPOILPD_00654	353496.LBU_0591	9.5e-34	149.1	Lactobacillaceae													Bacteria	1U8I5@1239,29QRD@1,30BR7@2,3FB0F@33958,4IIG5@91061	NA|NA|NA		
PAPOILPD_00655	353496.LBU_0590	7.1e-189	666.4	Lactobacillaceae	ampC												Bacteria	1TNZX@1239,3F3WZ@33958,4IPJT@91061,COG1680@1,COG1680@2	NA|NA|NA	V	Beta-lactamase
PAPOILPD_00658	1293597.BN147_00930	2.5e-163	581.6	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00659	353496.LBU_0588	1.3e-27	128.6	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00660	390333.Ldb0692	2e-255	887.9	Lactobacillaceae	pgi	GO:0003674,GO:0003824,GO:0004347,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	5.3.1.9	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	M00001,M00004,M00114	R02739,R02740,R03321	RC00376,RC00563	ko00000,ko00001,ko00002,ko01000,ko04147			iLJ478.TM1385	Bacteria	1TP29@1239,3F3XK@33958,4H9VI@91061,COG0166@1,COG0166@2	NA|NA|NA	G	Belongs to the GPI family
PAPOILPD_00661	353496.LBU_0586	3.9e-113	414.1	Lactobacillaceae	vanZ												Bacteria	1VK3A@1239,3F5EN@33958,4HPCD@91061,COG4767@1,COG4767@2	NA|NA|NA	V	VanZ like family
PAPOILPD_00662	390333.Ldb0690	0.0	1372.1	Lactobacillaceae	ltaS	GO:0005575,GO:0005576	2.7.8.20	ko:K01138,ko:K19005	ko00561,ko01100,map00561,map01100		R05081,R10849	RC00017	ko00000,ko00001,ko01000				Bacteria	1TRMA@1239,3F3R7@33958,4H9S0@91061,COG1368@1,COG1368@2	NA|NA|NA	M	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
PAPOILPD_00663	353496.LBU_0584	9.1e-268	929.1	Lactobacillaceae													Bacteria	1V10X@1239,3F3Z4@33958,4H9UD@91061,COG0642@1,COG2205@2	NA|NA|NA	T	PhoQ Sensor
PAPOILPD_00664	353496.LBU_0583	6.8e-133	479.9	Lactobacillaceae													Bacteria	1TPZ0@1239,3FC92@33958,4HA7D@91061,COG0745@1,COG0745@2	NA|NA|NA	K	Transcriptional regulatory protein, C terminal
PAPOILPD_00667	390333.Ldb0686	5.9e-219	766.5	Lactobacillaceae	ackA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.7.2.1	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	M00357,M00579	R00315,R01353	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv0409	Bacteria	1TQ22@1239,3F48Z@33958,4HA7K@91061,COG0282@1,COG0282@2	NA|NA|NA	F	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PAPOILPD_00668	390333.Ldb0685	4e-184	650.6	Lactobacillaceae	ytxK		2.1.1.72	ko:K00571					ko00000,ko01000,ko02048				Bacteria	1TRIQ@1239,3F4CI@33958,4H9SE@91061,COG0827@1,COG0827@2	NA|NA|NA	L	N-6 DNA Methylase
PAPOILPD_00669	97137.C821_01069	4.3e-11	75.1	Lactobacillaceae	comGF			ko:K02246,ko:K02248		M00429			ko00000,ko00002,ko02044				Bacteria	1U6NI@1239,3F87B@33958,4IGFH@91061,COG4940@1,COG4940@2	NA|NA|NA	U	Putative Competence protein ComGF
PAPOILPD_00671	390333.Ldb0682	4.3e-74	283.9	Lactobacillaceae				ko:K02246		M00429			ko00000,ko00002,ko02044				Bacteria	1U703@1239,2DKTE@1,30AR0@2,3F8SW@33958,4IGUD@91061	NA|NA|NA		
PAPOILPD_00672	353496.LBU_0576	1.6e-49	201.8	Lactobacillaceae	comGC	GO:0005575,GO:0005623,GO:0005886,GO:0009986,GO:0016020,GO:0044464,GO:0071944		ko:K02245,ko:K02456	ko03070,ko05111,map03070,map05111	M00331,M00429			ko00000,ko00001,ko00002,ko02044	3.A.15			Bacteria	1VFI9@1239,3F7ZC@33958,4HNNT@91061,COG4537@1,COG4537@2	NA|NA|NA	U	competence protein ComGC
PAPOILPD_00673	353496.LBU_0575	1.7e-155	555.4	Lactobacillaceae	comGB			ko:K02244		M00429			ko00000,ko00002,ko02044	3.A.14.1			Bacteria	1U00C@1239,3F3S9@33958,4HGUA@91061,COG1459@1,COG1459@2	NA|NA|NA	NU	type II secretion system
PAPOILPD_00674	353496.LBU_0574	3.5e-177	627.5	Lactobacillaceae	comGA			ko:K02243		M00429			ko00000,ko00002,ko02044	3.A.14.1			Bacteria	1TPGE@1239,3F4HY@33958,4HB0C@91061,COG2804@1,COG2804@2	NA|NA|NA	NU	Type II IV secretion system protein
PAPOILPD_00675	1293597.BN147_03325	6e-129	466.8	Lactobacillaceae	yebC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896											Bacteria	1TPP5@1239,3F4WF@33958,4H9WJ@91061,COG0217@1,COG0217@2	NA|NA|NA	K	Transcriptional regulatory protein
PAPOILPD_00676	390333.Ldb0676	2.1e-88	331.6	Lactobacillaceae													Bacteria	1VF6Q@1239,3F57S@33958,4HMDE@91061,COG5652@1,COG5652@2	NA|NA|NA	S	VanZ like family
PAPOILPD_00677	353496.LBU_0570	2.5e-158	564.7	Lactobacillaceae	psaA			ko:K02077		M00244			ko00000,ko00002,ko02000	3.A.1.15			Bacteria	1TRKU@1239,3F4B9@33958,4HAKT@91061,COG0803@1,COG0803@2	NA|NA|NA	P	Belongs to the bacterial solute-binding protein 9 family
PAPOILPD_00678	390333.Ldb0674	3.9e-156	557.4	Lactobacillaceae	rssA												Bacteria	1TQ9W@1239,3F52H@33958,4HCHJ@91061,COG4667@1,COG4667@2	NA|NA|NA	S	Phospholipase, patatin family
PAPOILPD_00679	353496.LBU_0568	2.5e-100	371.3	Lactobacillaceae	msrA		1.8.4.11,1.8.4.12	ko:K07304,ko:K12267					ko00000,ko01000				Bacteria	1TQ3E@1239,3F3YI@33958,4HAIV@91061,COG0225@1,COG0225@2	NA|NA|NA	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PAPOILPD_00680	353496.LBU_0567	0.0	1089.7	Lactobacillaceae				ko:K20265	ko02024,map02024				ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3			Bacteria	1VT70@1239,3FCAG@33958,4HUMC@91061,COG0531@1,COG0531@2	NA|NA|NA	E	Amino acid permease
PAPOILPD_00681	1293597.BN147_03290	1.1e-78	299.7	Lactobacillaceae													Bacteria	1UJSC@1239,3F4ZZ@33958,4HCVT@91061,COG0702@1,COG0702@2	NA|NA|NA	GM	NmrA-like family
PAPOILPD_00682	353496.LBU_0565	2.4e-83	314.7	Lactobacillaceae	ptpA		3.1.3.48	ko:K01104,ko:K20945	ko05111,map05111				ko00000,ko00001,ko01000				Bacteria	1V6SG@1239,3F74A@33958,4HIZN@91061,COG0394@1,COG0394@2	NA|NA|NA	T	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PAPOILPD_00683	353496.LBU_0564	1.4e-63	248.8	Lactobacillaceae													Bacteria	1U7ZN@1239,29QEW@1,30BE8@2,3FAD1@33958,4IHX2@91061	NA|NA|NA		
PAPOILPD_00685	390333.Ldb0667	2.5e-88	332.0	Firmicutes													Bacteria	1V037@1239,COG2199@1,COG2199@2	NA|NA|NA	T	Diguanylate cyclase, GGDEF domain
PAPOILPD_00686	390333.Ldb0663	7.3e-122	443.4	Lactobacillaceae													Bacteria	1U56K@1239,29NKW@1,309IV@2,3F4Y0@33958,4IEXT@91061	NA|NA|NA		
PAPOILPD_00687	353496.LBU_0557	3e-57	227.6	Lactobacillaceae	crcB	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425		ko:K06199					ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3			Bacteria	1VM30@1239,3F8A8@33958,4HRC4@91061,COG0239@1,COG0239@2	NA|NA|NA	U	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PAPOILPD_00688	353496.LBU_0556	5.1e-63	246.9	Lactobacillaceae	crcB			ko:K06199					ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3			Bacteria	1U4G6@1239,3F6R4@33958,4IE88@91061,COG0239@1,COG0239@2	NA|NA|NA	U	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PAPOILPD_00689	353496.LBU_0555	0.0	1163.3	Lactobacillaceae	copA		3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016		R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5			Bacteria	1TP5S@1239,3F4IX@33958,4HAI0@91061,COG2217@1,COG2217@2	NA|NA|NA	P	P-type ATPase
PAPOILPD_00690	390333.Ldb0659	5.5e-54	216.9	Lactobacillaceae	silP		1.9.3.1,3.6.3.54	ko:K02275,ko:K17686	ko00190,ko01100,ko01524,ko04016,map00190,map01100,map01524,map04016	M00155	R00081,R00086	RC00002,RC00016	ko00000,ko00001,ko00002,ko01000	3.A.3.5,3.D.4.2,3.D.4.4,3.D.4.6			Bacteria	1TQ02@1239,3FBQA@33958,4IRVT@91061,COG4633@1,COG4633@2	NA|NA|NA	S	Cupredoxin-like domain
PAPOILPD_00691	390333.Ldb0658	1.1e-72	279.3	Lactobacillaceae	atkY												Bacteria	1VA7Q@1239,3F7D0@33958,4HKGF@91061,COG3682@1,COG3682@2	NA|NA|NA	K	Copper transport repressor CopY TcrY
PAPOILPD_00692	1293597.BN147_03225	7.5e-111	407.1	Lactobacillaceae	blaA6												Bacteria	1U828@1239,3F4K3@33958,4HA0Q@91061,COG1680@1,COG1680@2	NA|NA|NA	V	Beta-lactamase
PAPOILPD_00693	353496.LBU_1128	4.2e-98	364.4	Lactobacillaceae	sip												Bacteria	1TTJI@1239,3F4IB@33958,4HDG6@91061,COG0582@1,COG0582@2	NA|NA|NA	L	Belongs to the 'phage' integrase family
PAPOILPD_00694	353496.LBU_1127	7.1e-175	619.8	Lactobacillaceae	ribF		2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS06310	Bacteria	1TPKS@1239,3F3TG@33958,4H9KE@91061,COG0196@1,COG0196@2	NA|NA|NA	H	Belongs to the ribF family
PAPOILPD_00695	353496.LBU_1126	5.3e-179	633.6	Lactobacillaceae	hrcA	GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141		ko:K03705					ko00000,ko03000				Bacteria	1TQP7@1239,3F3ST@33958,4HAX5@91061,COG1420@1,COG1420@2	NA|NA|NA	K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
PAPOILPD_00696	390333.Ldb1314	1.3e-84	319.3	Lactobacillaceae	grpE	GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009986,GO:0009987,GO:0009991,GO:0016043,GO:0017076,GO:0019904,GO:0022607,GO:0030234,GO:0030246,GO:0030247,GO:0030312,GO:0030554,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033554,GO:0036094,GO:0040007,GO:0042594,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0050790,GO:0050896,GO:0051082,GO:0051716,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0071496,GO:0071840,GO:0071944,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065		ko:K03687					ko00000,ko03029,ko03110				Bacteria	1V6G2@1239,3F4DY@33958,4HIRK@91061,COG0576@1,COG0576@2	NA|NA|NA	O	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PAPOILPD_00697	390333.Ldb1313	0.0	1117.8	Lactobacillaceae	dnaK	GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0030246,GO:0030247,GO:0044464,GO:0051704,GO:0098630,GO:0098743,GO:2001065		ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152				ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	1.A.33.1			Bacteria	1TP1J@1239,3F48C@33958,4HA9S@91061,COG0443@1,COG0443@2	NA|NA|NA	O	Heat shock 70 kDa protein
PAPOILPD_00698	390333.Ldb1312	2.5e-166	591.7	Lactobacillaceae	dnaJ			ko:K03686					ko00000,ko03029,ko03110				Bacteria	1TP00@1239,3F490@33958,4H9KA@91061,COG0484@1,COG0484@2	NA|NA|NA	O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
PAPOILPD_00699	353496.LBU_1122	0.0	1209.5	Lactobacillaceae	lepA			ko:K03596	ko05134,map05134				ko00000,ko00001				Bacteria	1TP0G@1239,3F3Z1@33958,4HASA@91061,COG0481@1,COG0481@2	NA|NA|NA	M	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
PAPOILPD_00700	390333.Ldb1310	6.8e-122	443.4	Lactobacillaceae	srtA		3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	1V83Z@1239,3F54V@33958,4HJV9@91061,COG3764@1,COG3764@2	NA|NA|NA	M	sortase family
PAPOILPD_00701	353496.LBU_1120	0.0	1513.0	Lactobacillaceae	recJ			ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPXE@1239,3F42C@33958,4H9UP@91061,COG0608@1,COG0608@2	NA|NA|NA	L	Single-stranded-DNA-specific exonuclease RecJ
PAPOILPD_00702	353496.LBU_1119	5.9e-94	350.1	Lactobacillaceae	apt	GO:0003674,GO:0003824,GO:0003999,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006168,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009113,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.4.2.22,2.4.2.7	ko:K00759,ko:K03816,ko:K09685	ko00230,ko01100,ko01110,map00230,map01100,map01110		R00190,R01229,R02142,R04378	RC00063,RC00122	ko00000,ko00001,ko01000,ko03000,ko04147				Bacteria	1V1BV@1239,3F4DB@33958,4HFUA@91061,COG0503@1,COG0503@2	NA|NA|NA	F	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PAPOILPD_00703	353496.LBU_1118	1.1e-47	195.7	Bacteria													Bacteria	COG0640@1,COG0640@2	NA|NA|NA	K	DNA-binding transcription factor activity
PAPOILPD_00704	353496.LBU_1117	1.1e-153	549.3	Lactobacillaceae	czcD			ko:K16264					ko00000,ko02000	2.A.4.1			Bacteria	1TR92@1239,3F4KJ@33958,4HBCQ@91061,COG1230@1,COG1230@2	NA|NA|NA	P	cation diffusion facilitator family transporter
PAPOILPD_00705	390333.Ldb1305	5.3e-200	703.4	Lactobacillaceae	ilvE		2.6.1.42	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R10991	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	1TQQI@1239,3F4BD@33958,4HASX@91061,COG0115@1,COG0115@2	NA|NA|NA	E	Branched-chain amino acid aminotransferase
PAPOILPD_00706	390333.Ldb1304	5e-183	647.1	Lactobacillaceae													Bacteria	1TQ84@1239,3F8AV@33958,4I36I@91061,COG0628@1,COG0628@2	NA|NA|NA	S	AI-2E family transporter
PAPOILPD_00707	390333.Ldb1301	0.0	1395.2	Lactobacillaceae			3.6.3.2,3.6.3.6	ko:K01531,ko:K01535	ko00190,map00190				ko00000,ko00001,ko01000	3.A.3.3,3.A.3.4			Bacteria	1TPF5@1239,3F55J@33958,4HVA4@91061,COG0474@1,COG0474@2	NA|NA|NA	P	Cation transporter/ATPase, N-terminus
PAPOILPD_00708	390333.Ldb1300	6.5e-159	566.6	Lactobacillaceae	lysR5												Bacteria	1UXFR@1239,3F4XG@33958,4HBNZ@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_00709	390333.Ldb1299	5.7e-259	899.8	Lactobacillaceae	glnPH2			ko:K02029,ko:K02030,ko:K17073,ko:K17074	ko02010,map02010	M00236,M00589			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.20			Bacteria	1TPM3@1239,3F48Y@33958,4HAS2@91061,COG0765@1,COG0765@2,COG0834@1,COG0834@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00710	353496.LBU_1110	1.2e-132	479.2	Lactobacillaceae	glnQ		3.6.3.21	ko:K02028		M00236			ko00000,ko00002,ko01000,ko02000	3.A.1.3			Bacteria	1TNYD@1239,3F3QQ@33958,4H9WY@91061,COG1126@1,COG1126@2	NA|NA|NA	E	ABC transporter, ATP-binding protein
PAPOILPD_00711	353496.LBU_1109	1.4e-102	379.0	Lactobacillaceae													Bacteria	1V790@1239,2ADW4@1,313N4@2,3F92C@33958,4HQX4@91061	NA|NA|NA	S	Protein of unknown function (DUF4230)
PAPOILPD_00712	390333.Ldb1294	1.7e-243	848.2	Lactobacillaceae	eno	GO:0001968,GO:0003674,GO:0005488,GO:0005515,GO:0043236,GO:0050840	4.2.1.11	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	M00001,M00002,M00003,M00346,M00394	R00658	RC00349	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147				Bacteria	1V12I@1239,3FCCA@33958,4HTD2@91061,COG0148@1,COG0148@2	NA|NA|NA	G	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
PAPOILPD_00713	353496.LBU_1105	5e-148	530.4	Lactobacillaceae	yitS												Bacteria	1V0RC@1239,3F4PM@33958,4HBSA@91061,COG1307@1,COG1307@2	NA|NA|NA	S	Uncharacterised protein, DegV family COG1307
PAPOILPD_00714	353496.LBU_1104	4.7e-100	370.5	Lactobacillaceae			3.6.1.27	ko:K19302	ko00550,map00550		R05627	RC00002	ko00000,ko00001,ko01000,ko01011				Bacteria	1U506@1239,3F3M2@33958,4IES2@91061,COG0671@1,COG0671@2	NA|NA|NA	I	Acid phosphatase homologues
PAPOILPD_00715	353496.LBU_1103	6.5e-156	556.6	Lactobacillaceae													Bacteria	1U6DR@1239,29PBT@1,30AA0@2,3F7P3@33958,4IG5G@91061	NA|NA|NA		
PAPOILPD_00716	353496.LBU_1102	6e-163	580.1	Lactobacillaceae	lysR7												Bacteria	1V09D@1239,3F6R1@33958,4IQPY@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_00717	390333.Ldb1289	2.1e-305	1054.3	Lactobacillaceae	yfiB1			ko:K06147,ko:K06148,ko:K18891	ko02010,map02010	M00708			ko00000,ko00001,ko00002,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.135,3.A.1.21			Bacteria	1TP0B@1239,3F3SP@33958,4H9SC@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_00718	353496.LBU_1100	0.0	1093.6	Lactobacillaceae	XK27_10035			ko:K06147,ko:K11085	ko02010,map02010				ko00000,ko00001,ko01000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	1TP0B@1239,3F3PD@33958,4HA3S@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
PAPOILPD_00719	390333.Ldb1285	6.5e-53	213.4	Bacteria	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	COG2200@1,COG2200@2	NA|NA|NA	T	EAL domain
PAPOILPD_00720	1293597.BN147_06500	3e-08	64.3	Lactobacillaceae	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	1UVBB@1239,3F62M@33958,4I2KE@91061,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
PAPOILPD_00721	353496.LBU_1096	1.4e-167	595.5	Lactobacillaceae	ypjC												Bacteria	1TR9J@1239,3FC4M@33958,4H9N6@91061,COG1284@1,COG1284@2	NA|NA|NA	S	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PAPOILPD_00722	390333.Ldb1280	1.7e-218	765.0	Lactobacillaceae	cca		2.7.7.19,2.7.7.72	ko:K00970,ko:K00974	ko03013,ko03018,map03013,map03018		R09382,R09383,R09384,R09386	RC00078	ko00000,ko00001,ko01000,ko03016,ko03019				Bacteria	1TQ2A@1239,3F3VH@33958,4HB2W@91061,COG0617@1,COG0617@2	NA|NA|NA	J	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
PAPOILPD_00723	390333.Ldb1707	3.7e-260	903.7	Lactobacillaceae	adhE		1.1.1.1,1.2.1.10	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220		R00228,R00623,R00754,R01172,R04880,R05233,R05234,R06917,R06927	RC00004,RC00050,RC00088,RC00099,RC00116,RC00184,RC00649,RC01195	ko00000,ko00001,ko01000				Bacteria	1UHQT@1239,3FBVK@33958,4IS6J@91061,COG1012@1,COG1012@2	NA|NA|NA	C	Aldehyde dehydrogenase family
PAPOILPD_00724	390333.Ldb1706	7.6e-83	313.2	Firmicutes													Bacteria	1V6QK@1239,COG4720@1,COG4720@2	NA|NA|NA	S	ECF-type riboflavin transporter, S component
PAPOILPD_00725	353496.LBU_1453	1e-20	106.3	Bacteria													Bacteria	COG2200@1,COG2200@2	NA|NA|NA	T	EAL domain
PAPOILPD_00726	353496.LBU_1453	1.7e-42	178.3	Bacteria													Bacteria	COG2200@1,COG2200@2	NA|NA|NA	T	EAL domain
PAPOILPD_00727	1293597.BN147_04270	4.4e-53	214.5	Lactobacillaceae			5.99.1.2	ko:K03168					ko00000,ko01000,ko03032,ko03400				Bacteria	1TSW8@1239,3F4R9@33958,4HBT1@91061,COG2199@1,COG2199@2,COG2200@1,COG2200@2,COG3706@2	NA|NA|NA	T	diguanylate cyclase
PAPOILPD_00728	353496.LBU_1451	7.3e-66	256.5	Lactobacillaceae			2.7.13.3	ko:K11527					ko00000,ko01000,ko01001,ko02022				Bacteria	1TSW8@1239,3F4R9@33958,4HBT1@91061,COG2199@1,COG3706@2	NA|NA|NA	T	diguanylate cyclase
PAPOILPD_00729	353496.LBU_1450	4.8e-210	736.9	Lactobacillaceae	pepQ		3.4.13.9	ko:K01271					ko00000,ko01000,ko01002				Bacteria	1TQ6R@1239,3F3X5@33958,4HA5I@91061,COG0006@1,COG0006@2	NA|NA|NA	E	Creatinase/Prolidase N-terminal domain
PAPOILPD_00730	353496.LBU_1449	6.7e-210	736.5	Lactobacillaceae													Bacteria	1UHQE@1239,3FBVQ@33958,4IS66@91061,COG0477@1,COG0477@2	NA|NA|NA	EGP	Transmembrane secretion effector
PAPOILPD_00731	390333.Ldb1696	3.3e-192	677.6	Lactobacillaceae													Bacteria	1U8DP@1239,29QP4@1,30BNS@2,3FAVC@33958,4IIBM@91061	NA|NA|NA		
PAPOILPD_00732	353496.LBU_1445	3.7e-221	773.9	Bacteria			6.3.4.18,6.3.5.5	ko:K01589,ko:K01955,ko:K16181	ko00230,ko00240,ko00250,ko00300,ko01100,ko01110,ko01120,ko01130,map00230,map00240,map00250,map00300,map01100,map01110,map01120,map01130	M00048,M00051	R00256,R00575,R01395,R07404,R10011,R10948,R10949	RC00002,RC00010,RC00043,RC00096,RC00141,RC01927,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000				Bacteria	COG0026@1,COG0026@2	NA|NA|NA	F	5-(carboxyamino)imidazole ribonucleotide synthase activity
PAPOILPD_00733	390333.Ldb1692	1.3e-232	812.0	Lactobacillaceae			6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502		R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	1UIIX@1239,3F7I7@33958,4HI82@91061,COG1181@1,COG1181@2	NA|NA|NA	F	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
PAPOILPD_00734	353496.LBU_1443	1.1e-92	345.9	Bacilli			3.6.1.13	ko:K01515	ko00230,map00230		R01054	RC00002	ko00000,ko00001,ko01000				Bacteria	1V9FI@1239,4HJ1A@91061,COG0494@1,COG0494@2	NA|NA|NA	L	COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
PAPOILPD_00735	353496.LBU_1442	2.5e-297	1027.3	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00736	390333.Ldb1689	8.7e-60	236.1	Lactobacillaceae	yvoA_1			ko:K07979					ko00000,ko03000				Bacteria	1VA2B@1239,3F6GC@33958,4HPK4@91061,COG1725@1,COG1725@2	NA|NA|NA	K	Transcriptional regulator, GntR family
PAPOILPD_00737	353496.LBU_1440	5.7e-121	440.3	Lactobacillaceae	skfE			ko:K01990		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TPUP@1239,3F4GA@33958,4HG6U@91061,COG1131@1,COG1131@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
PAPOILPD_00739	353496.LBU_1438	3.6e-290	1003.4	Lactobacillaceae	gltX	GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009986,GO:0030246,GO:0030247,GO:0044424,GO:0044464,GO:2001065	6.1.1.17,6.1.1.24	ko:K01885,ko:K09698	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R03651,R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016			iSB619.SA_RS02860	Bacteria	1TPJC@1239,3F3PR@33958,4HAKH@91061,COG0008@1,COG0008@2	NA|NA|NA	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PAPOILPD_00740	353496.LBU_1437	3.4e-178	630.9	Lactobacillaceae	yeiH												Bacteria	1TQYA@1239,3F4TY@33958,4HCCP@91061,COG2855@1,COG2855@2	NA|NA|NA	S	Conserved hypothetical protein 698
PAPOILPD_00741	353496.LBU_1436	1.6e-160	572.0	Lactobacillaceae													Bacteria	1TSNI@1239,3FBIA@33958,4HDGS@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_00742	1293597.BN147_01265	9.8e-32	142.1	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00743	353496.LBU_1434	1.7e-102	378.6	Lactobacillaceae				ko:K03575	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	1V1P7@1239,3F6FW@33958,4HFQH@91061,COG1051@1,COG1051@2	NA|NA|NA	F	NUDIX domain
PAPOILPD_00744	353496.LBU_1433	1.7e-273	948.0	Lactobacillaceae	cysS	GO:0000166,GO:0001871,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030246,GO:0030247,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065	6.1.1.16,6.3.1.13	ko:K01883,ko:K15526	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iECUMN_1333.ECUMN_0566,iJN746.PP_2905	Bacteria	1TP9D@1239,3F4K7@33958,4HA6D@91061,COG0215@1,COG0215@2	NA|NA|NA	J	Belongs to the class-I aminoacyl-tRNA synthetase family
PAPOILPD_00745	353496.LBU_1432	9.4e-77	292.7	Lactobacillaceae	mrnC	GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360		ko:K11145					ko00000,ko01000,ko03009				Bacteria	1VA5V@1239,3F6HS@33958,4HIM3@91061,COG1939@1,COG1939@2	NA|NA|NA	J	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
PAPOILPD_00746	353496.LBU_1431	2.5e-138	498.0	Lactobacillaceae	rlmB	GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.185	ko:K03218,ko:K03437,ko:K12952					ko00000,ko01000,ko03009,ko03016	3.A.3.23			Bacteria	1TP9G@1239,3F3TD@33958,4HBBI@91061,COG0566@1,COG0566@2	NA|NA|NA	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAPOILPD_00747	353496.LBU_1430	1.9e-98	365.2	Bacilli	yvrI			ko:K03091,ko:K03093					ko00000,ko03021				Bacteria	1UJ8I@1239,4IT4G@91061,COG1191@1,COG1191@2	NA|NA|NA	K	sigma factor activity
PAPOILPD_00748	353496.LBU_1429	4.5e-32	143.3	Lactobacillaceae													Bacteria	1U6KC@1239,29PH8@1,30AFD@2,3F83D@33958,4IGD6@91061	NA|NA|NA		
PAPOILPD_00749	353496.LBU_1428	5e-113	414.1	Lactobacillaceae			4.2.99.20	ko:K06889,ko:K08680	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116	R08166	RC02148,RC02475	ko00000,ko00001,ko00002,ko01000				Bacteria	1V2C5@1239,3FBVP@33958,4ISTT@91061,COG1073@1,COG1073@2	NA|NA|NA	S	Alpha/beta hydrolase family
PAPOILPD_00750	1293597.BN147_01300	5.2e-280	969.9	Lactobacillaceae	dxs	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0008661,GO:0009058,GO:0009240,GO:0009987,GO:0016740,GO:0016744,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0019842,GO:0030145,GO:0030975,GO:0032787,GO:0036094,GO:0040007,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901363,GO:1901576,GO:1901681	2.2.1.7	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	M00096	R05636	RC00032	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP37@1239,3F4RN@33958,4H9QW@91061,COG1154@1,COG1154@2	NA|NA|NA	H	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PAPOILPD_00751	1293597.BN147_01305	1e-19	101.7	Lactobacillaceae	rpmG			ko:K02913	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VFTQ@1239,3F83F@33958,4HR5Q@91061,COG0267@1,COG0267@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL33 family
PAPOILPD_00752	353496.LBU_1422	2.5e-22	110.5	Lactobacillaceae	secE	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944		ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2			Bacteria	1VK48@1239,3F86Y@33958,4HR1W@91061,COG0690@1,COG0690@2	NA|NA|NA	U	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
PAPOILPD_00753	390333.Ldb1667	1.4e-98	365.5	Lactobacillaceae	nusG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141		ko:K02601					ko00000,ko03009,ko03021				Bacteria	1TR3P@1239,3F55W@33958,4HAJA@91061,COG0250@1,COG0250@2	NA|NA|NA	K	Participates in transcription elongation, termination and antitermination
PAPOILPD_00754	353496.LBU_1420	6.9e-69	266.5	Lactobacillaceae	rplK	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02867	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V1BS@1239,3F64I@33958,4HFQ0@91061,COG0080@1,COG0080@2	NA|NA|NA	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PAPOILPD_00755	353496.LBU_1419	7.5e-121	439.9	Lactobacillaceae	rplA	GO:0000027,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0017148,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045947,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02863	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TPTS@1239,3F3VQ@33958,4HAK4@91061,COG0081@1,COG0081@2	NA|NA|NA	J	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
PAPOILPD_00756	390333.Ldb1664	9.2e-189	666.0	Lactobacillaceae													Bacteria	1VV6P@1239,3F5FS@33958,4IT94@91061,COG1216@1,COG1216@2	NA|NA|NA	S	Glycosyl transferase family 2
PAPOILPD_00757	353496.LBU_1417	1.8e-229	801.6	Lactobacillaceae	amtB			ko:K03320					ko00000,ko02000	1.A.11			Bacteria	1TQYG@1239,3F3X1@33958,4HBGK@91061,COG0004@1,COG0004@2	NA|NA|NA	P	ammonium transporter
PAPOILPD_00758	390333.Ldb1662	2.1e-67	261.5	Lactobacillaceae													Bacteria	1U7MQ@1239,29Q7I@1,30B6J@2,3F9X0@33958,4IHIW@91061	NA|NA|NA		
PAPOILPD_00759	353496.LBU_1413	1.2e-80	305.8	Lactobacillaceae	rplJ	GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0017148,GO:0019222,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02864,ko:K02935	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V3JJ@1239,3F4S4@33958,4HH0N@91061,COG0244@1,COG0244@2	NA|NA|NA	J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PAPOILPD_00760	353496.LBU_1412	5.2e-49	200.3	Lactobacillaceae	rplL			ko:K02935	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6EI@1239,3F6YA@33958,4HIGQ@91061,COG0222@1,COG0222@2	NA|NA|NA	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
PAPOILPD_00761	353496.LBU_1022	4.3e-64	250.4	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_00763	1035196.HMPREF9998_00204	3.5e-13	82.0	Firmicutes													Bacteria	1VK5Q@1239,2EJYJ@1,33DP6@2	NA|NA|NA		
PAPOILPD_00764	1423790.BN53_01690	3.8e-243	847.0	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_00765	353496.LBU_0172	0.0	1297.3	Lactobacillaceae	pepO		3.4.24.71	ko:K01415,ko:K07386					ko00000,ko01000,ko01002,ko04147				Bacteria	1TQTA@1239,3F4CX@33958,4HDSF@91061,COG3590@1,COG3590@2	NA|NA|NA	O	Peptidase family M13
PAPOILPD_00766	353496.LBU_0171	1.1e-61	242.3	Lactobacillaceae	Z012_07300												Bacteria	1VGNW@1239,3FA2Z@33958,4IHP3@91061,COG4545@1,COG4545@2	NA|NA|NA	O	Glutaredoxin-related protein
PAPOILPD_00767	390333.Ldb0216	1.3e-224	785.4	Lactobacillaceae	yttB												Bacteria	1TSFM@1239,3FBST@33958,4HABN@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00768	1293597.BN147_09275	7.1e-165	587.0	Lactobacillaceae	XK27_04775			ko:K09155					ko00000				Bacteria	1TRD5@1239,3F45M@33958,4HAAW@91061,COG2461@1,COG2461@2	NA|NA|NA	S	PAS domain
PAPOILPD_00769	1293597.BN147_09280	2e-55	222.2	Lactobacillaceae				ko:K02612	ko00360,ko01120,map00360,map01120		R09838	RC02690	ko00000,ko00001				Bacteria	1V9YV@1239,3F7D5@33958,4HKC6@91061,COG2151@1,COG2151@2	NA|NA|NA	S	Iron-sulfur cluster assembly protein
PAPOILPD_00770	390333.Ldb0212	2e-140	505.0	Lactobacillaceae	nrdG	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008998,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0031250,GO:0032991,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046385,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576	1.97.1.4	ko:K04068			R04710		ko00000,ko01000			iE2348C_1286.E2348C_4563	Bacteria	1V1HG@1239,3F46H@33958,4HGJ9@91061,COG0602@1,COG0602@2	NA|NA|NA	O	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PAPOILPD_00771	353496.LBU_0165	0.0	1510.0	Lactobacillaceae	nrdD	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008998,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016491,GO:0016725,GO:0016728,GO:0017076,GO:0018130,GO:0019001,GO:0019103,GO:0019438,GO:0019637,GO:0019692,GO:0030554,GO:0031250,GO:0032552,GO:0032553,GO:0032554,GO:0032555,GO:0032556,GO:0032558,GO:0032559,GO:0032560,GO:0032564,GO:0032567,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046385,GO:0046483,GO:0046872,GO:0046914,GO:0051065,GO:0055086,GO:0055114,GO:0071704,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576	1.1.98.6	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R11633,R11634,R11635,R11636	RC00613	ko00000,ko00001,ko00002,ko01000			iECIAI39_1322.ECIAI39_4713,iPC815.YPO3454	Bacteria	1TR9K@1239,3F435@33958,4HBIY@91061,COG1328@1,COG1328@2	NA|NA|NA	F	Ribonucleoside-triphosphate reductase
PAPOILPD_00772	353496.LBU_0164	5.5e-247	859.8	Lactobacillaceae	yxbA		6.3.1.12	ko:K17810					ko00000,ko01000				Bacteria	1TQPN@1239,3F3S7@33958,4HAB0@91061,COG3919@1,COG3919@2	NA|NA|NA	S	ATP-grasp enzyme
PAPOILPD_00773	353496.LBU_0163	0.0	1324.7	Lactobacillaceae	asnB		6.3.5.4	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110		R00578	RC00010	ko00000,ko00001,ko01000,ko01002				Bacteria	1TRPB@1239,3FB65@33958,4HA44@91061,COG0367@1,COG0367@2	NA|NA|NA	E	Asparagine synthase
PAPOILPD_00774	353496.LBU_0162	6.9e-267	926.0	Lactobacillaceae													Bacteria	1VMH1@1239,2EQYH@1,33II5@2,3F5E7@33958,4HUIK@91061	NA|NA|NA	S	Calcineurin-like phosphoesterase
PAPOILPD_00775	353496.LBU_0161	1.6e-82	312.0	Lactobacillaceae													Bacteria	1U5KG@1239,2CCK1@1,309S4@2,3F64Y@33958,4IFBA@91061	NA|NA|NA		
PAPOILPD_00776	353496.LBU_0160	1.3e-264	918.7	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00777	353496.LBU_0159	9.2e-147	526.2	Lactobacillaceae	phnE		3.6.1.63	ko:K02042,ko:K06162	ko00440,ko02010,map00440,map02010	M00223	R10186	RC00002	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.9			Bacteria	1V15B@1239,3F4TN@33958,4IQWU@91061,COG3639@1,COG3639@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
PAPOILPD_00778	390333.Ldb0204	3.7e-124	451.1	Lactobacillaceae	phnE		3.6.1.63	ko:K02042,ko:K06162	ko00440,ko02010,map00440,map02010	M00223	R10186	RC00002	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.9			Bacteria	1TR1S@1239,3F58M@33958,4HBT8@91061,COG3639@1,COG3639@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
PAPOILPD_00779	353496.LBU_0157	5.5e-133	480.3	Lactobacillaceae	phnC	GO:0006810,GO:0008150,GO:0015716,GO:0051179,GO:0051234,GO:0071702	3.6.3.28	ko:K02041	ko02010,map02010	M00223			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.9			Bacteria	1TQG6@1239,3F3SJ@33958,4HC3N@91061,COG3638@1,COG3638@2	NA|NA|NA	P	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
PAPOILPD_00780	353496.LBU_0156	2e-153	548.5	Lactobacillaceae	phnD			ko:K02044	ko02010,map02010	M00223			ko00000,ko00001,ko00002,ko02000	3.A.1.9			Bacteria	1TR0H@1239,3F3KK@33958,4HBJQ@91061,COG3221@1,COG3221@2	NA|NA|NA	P	Phosphonate ABC transporter
PAPOILPD_00781	353496.LBU_0155	5.5e-83	313.5	Lactobacillaceae	uspA			ko:K03499,ko:K06149					ko00000,ko02000	2.A.38.1,2.A.38.4			Bacteria	1VEJR@1239,3F4Z0@33958,4HNHG@91061,COG0589@1,COG0589@2	NA|NA|NA	T	universal stress protein
PAPOILPD_00782	353496.LBU_0154	6.3e-148	530.0	Lactobacillaceae	ptp3		3.1.3.48	ko:K01104					ko00000,ko01000				Bacteria	1V851@1239,3F55V@33958,4HJB2@91061,COG2365@1,COG2365@2	NA|NA|NA	T	Tyrosine phosphatase family
PAPOILPD_00783	390333.Ldb0199	4.3e-83	313.9	Lactobacillaceae			2.7.1.200,2.7.1.202,2.7.1.204	ko:K02768,ko:K02769,ko:K02770,ko:K02773,ko:K20112	ko00051,ko00052,ko01100,ko01120,ko02060,map00051,map00052,map01100,map01120,map02060	M00273,M00279,M00807	R03232,R05570,R11171	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.2.1,4.A.5,4.A.5.1			Bacteria	1V8H9@1239,3F4A7@33958,4HK36@91061,COG1762@1,COG1762@2	NA|NA|NA	G	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
PAPOILPD_00784	353496.LBU_0152	3e-89	334.3	Lactobacillaceae	ntd		2.4.2.6	ko:K08728	ko00240,map00240		R02806	RC00063	ko00000,ko00001,ko01000				Bacteria	1VY4Q@1239,3F5CB@33958,4HXB4@91061,COG3613@1,COG3613@2	NA|NA|NA	F	Nucleoside
PAPOILPD_00785	390333.Ldb0197	1.3e-218	765.4	Lactobacillaceae	nagA		3.5.1.25	ko:K01443	ko00520,ko01130,map00520,map01130		R02059	RC00166,RC00300	ko00000,ko00001,ko01000				Bacteria	1TPFK@1239,3F40F@33958,4HC6C@91061,COG1820@1,COG1820@2	NA|NA|NA	G	Belongs to the metallo-dependent hydrolases superfamily. NagA family
PAPOILPD_00786	353496.LBU_0149	0.0	2008.4	Lactobacillaceae													Bacteria	1TR8N@1239,3FC1B@33958,4HEJM@91061,COG1501@1,COG1501@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 31 family
PAPOILPD_00787	1293597.BN147_07645	2.2e-138	498.4	Lactobacillaceae	malG			ko:K15772	ko02010,map02010	M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1.16,3.A.1.1.2			Bacteria	1TRB7@1239,3F4NP@33958,4HC5K@91061,COG3833@1,COG3833@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_00788	1293597.BN147_07640	7e-240	836.3	Lactobacillaceae	malF			ko:K02025,ko:K02026,ko:K15771	ko02010,map02010	M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2			Bacteria	1TR2A@1239,3F4J1@33958,4HB8H@91061,COG1175@1,COG1175@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
PAPOILPD_00789	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_00790	1293597.BN147_00425	1.3e-85	323.2	Lactobacillaceae	lacT			ko:K02531,ko:K02538					ko00000,ko03000				Bacteria	1V9VB@1239,3FB5R@33958,4HJDW@91061,COG3711@1,COG3711@2	NA|NA|NA	K	CAT RNA binding domain
PAPOILPD_00791	1293597.BN147_00415	3.2e-258	897.5	Lactobacillaceae	celB	GO:0005975,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016310,GO:0044237,GO:0044238,GO:0044262,GO:0046835,GO:0071704	2.7.1.196,2.7.1.205,2.7.1.207	ko:K02760,ko:K02787,ko:K02788	ko00052,ko00500,ko01100,ko02060,map00052,map00500,map01100,map02060	M00275,M00281	R04393,R11170,R11172	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.3.1,4.A.3.2			Bacteria	1TQPV@1239,3F4DV@33958,4HC9I@91061,COG1440@1,COG1440@2,COG1455@1,COG1455@2	NA|NA|NA	G	Phosphotransferase system, EIIC
PAPOILPD_00792	1293597.BN147_00410	5.5e-259	899.8	Lactobacillaceae	lacG		3.2.1.85	ko:K01220	ko00052,ko01100,map00052,map01100		R03256	RC00049	ko00000,ko00001,ko01000				Bacteria	1TP19@1239,3FC7B@33958,4H9KU@91061,COG2723@1,COG2723@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 1 family
PAPOILPD_00793	1293597.BN147_00405	1.5e-61	243.0	Bacteria	XK27_01040												Bacteria	COG4858@1,COG4858@2	NA|NA|NA		
PAPOILPD_00794	1293597.BN147_00400	2.5e-75	288.1	Lactobacillaceae			2.7.1.200,2.7.1.202,2.7.1.204	ko:K02768,ko:K02769,ko:K02770,ko:K02773,ko:K20112	ko00051,ko00052,ko01100,ko01120,ko02060,map00051,map00052,map01100,map01120,map02060	M00273,M00279,M00807	R03232,R05570,R11171	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.2.1,4.A.5,4.A.5.1			Bacteria	1V8H9@1239,3F4A7@33958,4HK36@91061,COG1762@1,COG1762@2	NA|NA|NA	G	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
PAPOILPD_00795	1293597.BN147_00395	3.1e-50	204.1	Lactobacillaceae			2.7.1.200,2.7.1.204	ko:K02774,ko:K20113	ko00052,ko01100,ko02060,map00052,map01100,map02060	M00279,M00807	R05570,R11171	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.5,4.A.5.1			Bacteria	1VACD@1239,3F732@33958,4HKHR@91061,COG3414@1,COG3414@2	NA|NA|NA	G	PTS system, Lactose/Cellobiose specific IIB subunit
PAPOILPD_00796	1293597.BN147_00390	4e-262	910.2	Lactobacillaceae	gatC			ko:K02775,ko:K20114	ko00052,ko01100,ko02060,map00052,map01100,map02060	M00279,M00807	R05570,R11171	RC00017,RC03206	ko00000,ko00001,ko00002,ko02000	4.A.5,4.A.5.1			Bacteria	1TQ10@1239,3FCCG@33958,4HBJG@91061,COG3775@1,COG3775@2	NA|NA|NA	G	PTS system sugar-specific permease component
PAPOILPD_00797	1293597.BN147_00385	3e-27	127.5	Lactobacillaceae													Bacteria	1U6QX@1239,2C56S@1,2ZZ4P@2,3F8BZ@33958,4IGI7@91061	NA|NA|NA		
PAPOILPD_00798	1293597.BN147_00380	2.1e-177	628.2	Lactobacillaceae	yihT	GO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006790,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0034308,GO:0042180,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0061595,GO:0061720,GO:0071704,GO:1901135,GO:1901136,GO:1901575,GO:1901615,GO:1902776,GO:1902777	4.1.2.40,4.1.2.57	ko:K01635,ko:K01671	ko00052,ko01100,ko02024,map00052,map01100,map02024		R01069,R10760	RC00438,RC00439	ko00000,ko00001,ko01000				Bacteria	1TQRR@1239,3F3UA@33958,4HBS9@91061,COG3684@1,COG3684@2	NA|NA|NA	G	Belongs to the aldolase LacD family
PAPOILPD_00799	1293597.BN147_00360	3.8e-128	464.5	Lactobacillaceae	lacC		2.7.1.11,2.7.1.144,2.7.1.56	ko:K00882,ko:K00917,ko:K16370	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00345	R00756,R02071,R03236,R03237,R03238,R03239,R04779	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1TR9H@1239,3F56E@33958,4HAGR@91061,COG1105@1,COG1105@2	NA|NA|NA	H	pfkB family carbohydrate kinase
PAPOILPD_00800	1293597.BN147_00355	2e-110	405.6	Lactobacillaceae	yqhA												Bacteria	1U26T@1239,3FBIS@33958,4IQSK@91061,COG2017@1,COG2017@2	NA|NA|NA	G	Aldose 1-epimerase
PAPOILPD_00801	1293597.BN147_00350	1.5e-114	419.1	Lactobacillaceae	lacR			ko:K02530					ko00000,ko03000				Bacteria	1V097@1239,3F5GM@33958,4HGA7@91061,COG1349@1,COG1349@2	NA|NA|NA	K	DeoR C terminal sensor domain
PAPOILPD_00802	1293597.BN147_00345	2.6e-71	274.6	Lactobacillaceae	lacA		5.3.1.26	ko:K01819	ko00052,ko01100,map00052,map01100		R03240	RC00376	ko00000,ko00001,ko01000				Bacteria	1V5VZ@1239,3F6CQ@33958,4HJK6@91061,COG0698@1,COG0698@2	NA|NA|NA	G	Ribose/Galactose Isomerase
PAPOILPD_00803	1293597.BN147_00340	2.7e-100	371.3	Lactobacillaceae	rpiB		2.1.1.222,2.1.1.64,5.3.1.26,5.3.1.6	ko:K00568,ko:K01808,ko:K01819	ko00030,ko00051,ko00052,ko00130,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00052,map00130,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00117,M00165,M00167	R01056,R03240,R04988,R05614,R08769,R08781,R09030	RC00003,RC00376,RC00392,RC00434,RC01895	ko00000,ko00001,ko00002,ko01000				Bacteria	1U9Y4@1239,3F41M@33958,4HE4C@91061,COG0698@1,COG0698@2	NA|NA|NA	G	Ribose/Galactose Isomerase
PAPOILPD_00804	1293597.BN147_00335	1.8e-95	355.5	Lactobacillaceae													Bacteria	1U95M@1239,28PTU@1,2ZCEZ@2,3F6AW@33958,4HMHN@91061	NA|NA|NA	S	Domain of unknown function (DUF4867)
PAPOILPD_00805	1293597.BN147_03435	6.7e-190	670.2	Lactobacillaceae	cycA	GO:0001761,GO:0001762,GO:0003333,GO:0003674,GO:0005215,GO:0005326,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015180,GO:0015187,GO:0015238,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015808,GO:0015816,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0022858,GO:0022889,GO:0032328,GO:0032329,GO:0034220,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0042940,GO:0042941,GO:0042942,GO:0042943,GO:0042944,GO:0042945,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903825,GO:1905039		ko:K03293,ko:K11737					ko00000,ko02000	2.A.3.1,2.A.3.1.7		iECO111_1330.ECO111_5093,iECO26_1355.ECO26_5376,iEcHS_1320.EcHS_A4458,iSbBS512_1146.SbBS512_E4749,iYL1228.KPN_04601	Bacteria	1TP97@1239,3F3YD@33958,4H9QX@91061,COG1113@1,COG1113@2	NA|NA|NA	E	Amino acid permease
PAPOILPD_00806	390333.Ldb1746	3.1e-275	953.7	Lactobacillaceae	pepV		3.5.1.18	ko:K01270,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	M00016	R00899,R02734,R04951	RC00064,RC00090,RC00096,RC00141	ko00000,ko00001,ko00002,ko01000,ko01002				Bacteria	1TPEG@1239,3F3UV@33958,4HC14@91061,COG0624@1,COG0624@2	NA|NA|NA	E	dipeptidase PepV
PAPOILPD_00807	353496.LBU_1487	1.8e-136	491.9	Lactobacillaceae	ybbH_2												Bacteria	1W72J@1239,3F7DP@33958,4HYXP@91061,COG1737@1,COG1737@2	NA|NA|NA	K	Helix-turn-helix domain, rpiR family
PAPOILPD_00808	1293597.BN147_08225	1.5e-106	392.5	Bacteria			3.5.2.6	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	M00627,M00628	R06363	RC01499	ko00000,ko00001,ko00002,ko01000,ko01504				Bacteria	COG2367@1,COG2367@2	NA|NA|NA	V	Beta-lactamase
PAPOILPD_00809	353496.LBU_1484	6.5e-193	679.9	Lactobacillaceae	ykfB	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564	5.1.1.20	ko:K19802			R10938	RC03309	ko00000,ko01000				Bacteria	1TQMS@1239,3F4XQ@33958,4HCY5@91061,COG4948@1,COG4948@2	NA|NA|NA	M	Belongs to the mandelate racemase muconate lactonizing enzyme family
PAPOILPD_00810	390333.Ldb1741	1.7e-90	338.6	Lactobacillaceae	wecD												Bacteria	1V6Z8@1239,3F6WQ@33958,4HMP7@91061,COG0454@1,COG0456@2	NA|NA|NA	K	Acetyltransferase (GNAT) family
PAPOILPD_00811	353496.LBU_1482	1e-107	396.0	Lactobacillaceae	thiJ		2.7.11.1,3.5.1.124	ko:K03152,ko:K05520,ko:K12132					ko00000,ko01000,ko01001,ko01002				Bacteria	1V5RA@1239,3FBK3@33958,4HHSK@91061,COG0693@1,COG0693@2	NA|NA|NA	S	DJ-1/PfpI family
PAPOILPD_00812	353496.LBU_1481	3.4e-116	424.5	Lactobacillaceae				ko:K07090					ko00000				Bacteria	1VR9G@1239,3F3TR@33958,4HV4W@91061,COG0730@1,COG0730@2	NA|NA|NA	S	membrane transporter protein
PAPOILPD_00813	353496.LBU_1480	1.3e-125	455.7	Lactobacillaceae	pgm3												Bacteria	1TQF1@1239,3F4RY@33958,4I2XH@91061,COG0406@1,COG0406@2	NA|NA|NA	G	Belongs to the phosphoglycerate mutase family
PAPOILPD_00814	353496.LBU_1479	8.3e-27	125.6	Lactobacillaceae													Bacteria	1U87Y@1239,29QJS@1,30BJC@2,3FANN@33958,4II5N@91061	NA|NA|NA		
PAPOILPD_00815	353496.LBU_1478	5.8e-28	129.4	Lactobacillaceae													Bacteria	1U8KM@1239,2AJDM@1,319Z7@2,3FB33@33958,4IIIK@91061	NA|NA|NA		
PAPOILPD_00816	353496.LBU_1477	3.1e-124	451.1	Lactobacillaceae	gpmA	GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031	5.4.2.11	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147				Bacteria	1V2UT@1239,3F443@33958,4HGRK@91061,COG0588@1,COG0588@2	NA|NA|NA	G	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PAPOILPD_00817	353496.LBU_1476	1.5e-77	295.4	Lactobacillaceae	fabZ		3.5.1.108,4.2.1.59	ko:K02372,ko:K16363	ko00061,ko00540,ko00780,ko01100,ko01212,map00061,map00540,map00780,map01100,map01212	M00060,M00083,M00572	R04428,R04535,R04537,R04544,R04568,R04587,R04954,R04965,R07764,R10117,R10121	RC00166,RC00300,RC00831,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004,ko01005				Bacteria	1V6EX@1239,3F5EE@33958,4HGX1@91061,COG0764@1,COG0764@2	NA|NA|NA	I	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
PAPOILPD_00818	390333.Ldb1732	1.6e-179	635.2	Lactobacillaceae													Bacteria	1TQKR@1239,3F51A@33958,4HF9B@91061,COG4639@1,COG4639@2	NA|NA|NA	S	AAA domain
PAPOILPD_00820	390333.Ldb1730	1.5e-263	914.8	Lactobacillaceae	pepC	GO:0000096,GO:0000098,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006508,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009063,GO:0009636,GO:0009987,GO:0016054,GO:0016787,GO:0019538,GO:0019752,GO:0042221,GO:0043170,GO:0043418,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0050667,GO:0050896,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	3.4.22.40	ko:K01372					ko00000,ko01000,ko01002				Bacteria	1TRJN@1239,3F49B@33958,4HBZ9@91061,COG3579@1,COG3579@2	NA|NA|NA	E	Peptidase C1-like family
PAPOILPD_00821	353496.LBU_1472	1.6e-48	198.4	Lactobacillaceae													Bacteria	1U6EY@1239,2BRXH@1,32KXS@2,3F7RT@33958,4IG6S@91061	NA|NA|NA		
PAPOILPD_00822	353496.LBU_1471	7.6e-100	369.8	Lactobacillaceae	dut	GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	3.6.1.23,4.1.1.36,6.3.2.5	ko:K01520,ko:K13038	ko00240,ko00770,ko00983,ko01100,map00240,map00770,map00983,map01100	M00053,M00120	R02100,R03269,R04231,R11896	RC00002,RC00064,RC00090,RC00822	ko00000,ko00001,ko00002,ko01000,ko03400				Bacteria	1V6HX@1239,3F65D@33958,4HIZ3@91061,COG0756@1,COG0756@2	NA|NA|NA	F	dUTP diphosphatase
PAPOILPD_00823	390333.Ldb1727	2.5e-253	880.9	Lactobacillaceae	radA			ko:K04485					ko00000,ko03400				Bacteria	1TQ7Y@1239,3F3W8@33958,4H9YC@91061,COG1066@1,COG1066@2	NA|NA|NA	O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PAPOILPD_00824	353496.LBU_1469	8.4e-184	649.4	Lactobacillaceae	arbY	GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0016051,GO:0016740,GO:0016757,GO:0043170,GO:0044238,GO:0071704,GO:1901576											Bacteria	1VGDI@1239,3FBE4@33958,4IPQC@91061,COG1442@1,COG1442@2	NA|NA|NA	M	Glycosyl transferase family 8
PAPOILPD_00825	1293597.BN147_10045	5e-60	237.3	Bacilli	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	1TS8B@1239,4ISKA@91061,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
PAPOILPD_00826	353496.LBU_1467	1.8e-23	114.8	Bacilli	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	1TS8B@1239,4ISKA@91061,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
PAPOILPD_00827	353496.LBU_1467	2e-50	204.9	Bacilli	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	1TS8B@1239,4ISKA@91061,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
PAPOILPD_00828	390333.Ldb2206	1.9e-113	415.2	Lactobacillaceae													Bacteria	1U8J4@1239,29QRY@1,30BRT@2,3FB1I@33958,4IIH3@91061	NA|NA|NA		
PAPOILPD_00829	390333.Ldb2207	3.2e-103	381.3	Lactobacillaceae													Bacteria	1U63C@1239,29P41@1,30A28@2,3F6Y1@33958,4IFSS@91061	NA|NA|NA		
PAPOILPD_00830	390333.Ldb2208	5.9e-109	400.2	Lactobacillaceae				ko:K01990		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1V1P4@1239,3F4H6@33958,4I2PJ@91061,COG1131@1,COG1131@2	NA|NA|NA	V	AAA domain, putative AbiEii toxin, Type IV TA system
PAPOILPD_00831	390333.Ldb2209	1.1e-92	345.9	Lactobacillaceae													Bacteria	1U67I@1239,29P6Z@1,30A52@2,3F796@33958,4IFY3@91061	NA|NA|NA		
PAPOILPD_00832	390333.Ldb2211	8.5e-56	223.0	Lactobacillaceae													Bacteria	1U7R9@1239,2BKSQ@1,32F8U@2,3FA21@33958,4IHNM@91061	NA|NA|NA		
PAPOILPD_00833	390333.Ldb2210	4e-131	474.2	Lactobacillaceae													Bacteria	1UPZ6@1239,2AIFZ@1,33KBF@2,3F6BW@33958,4IVDJ@91061	NA|NA|NA		
PAPOILPD_00834	390333.Ldb2206	5e-66	257.7	Lactobacillaceae													Bacteria	1U8J4@1239,29QRY@1,30BRT@2,3FB1I@33958,4IIH3@91061	NA|NA|NA		
PAPOILPD_00835	390333.Ldb2211	1.4e-74	285.4	Lactobacillaceae													Bacteria	1U7R9@1239,2BKSQ@1,32F8U@2,3FA21@33958,4IHNM@91061	NA|NA|NA		
PAPOILPD_00836	353496.LBU_1787	1.2e-268	931.8	Lactobacillaceae	gnd		1.1.1.343,1.1.1.44	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	M00004,M00006	R01528,R10221	RC00001,RC00539	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP4I@1239,3F3S8@33958,4H9NC@91061,COG0362@1,COG0362@2	NA|NA|NA	H	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
PAPOILPD_00837	353496.LBU_1788	0.0	1209.1	Lactobacillaceae	poxB		1.2.3.3,1.2.5.1	ko:K00156,ko:K00158	ko00620,ko01100,map00620,map01100		R00207,R03145	RC00860,RC02745	ko00000,ko00001,ko01000				Bacteria	1TQE8@1239,3F3R9@33958,4HBUS@91061,COG0028@1,COG0028@2	NA|NA|NA	EH	Belongs to the TPP enzyme family
PAPOILPD_00838	390333.Ldb2214	0.0	1248.8	Lactobacillaceae	gidA	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363		ko:K03495			R08701	RC00053,RC00209,RC00870	ko00000,ko03016,ko03036				Bacteria	1TQ4B@1239,3F454@33958,4HA6S@91061,COG0445@1,COG0445@2	NA|NA|NA	D	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
PAPOILPD_00839	353496.LBU_1790	1.7e-249	868.2	Lactobacillaceae	mnmE	GO:0003674,GO:0005488,GO:0005515,GO:0042802		ko:K03650			R08701	RC00053,RC00209,RC00870	ko00000,ko01000,ko03016				Bacteria	1TPJF@1239,3F3WA@33958,4HA06@91061,COG0486@1,COG0486@2	NA|NA|NA	S	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PAPOILPD_00840	390333.Ldb2216	1.3e-143	515.8	Lactobacillaceae	yidC			ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9			Bacteria	1TQ0J@1239,3F3SD@33958,4HB3J@91061,COG0706@1,COG0706@2	NA|NA|NA	U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PAPOILPD_00841	353496.LBU_1792	3.3e-59	234.2	Lactobacillaceae	rnpA	GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031123,GO:0031404,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904	3.1.26.5	ko:K03536,ko:K08998					ko00000,ko01000,ko03016				Bacteria	1VA78@1239,3F6GS@33958,4HKG6@91061,COG0594@1,COG0594@2	NA|NA|NA	J	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
PAPOILPD_00842	1293597.BN147_05595	3.2e-15	86.7	Lactobacillaceae	rpmH	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02914	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VK90@1239,3F81W@33958,4HR2Z@91061,COG0230@1,COG0230@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL34 family
PAPOILPD_00843	353496.LBU_0001	1.7e-241	841.6	Lactobacillaceae	dnaA	GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837		ko:K02313	ko02020,ko04112,map02020,map04112				ko00000,ko00001,ko03032,ko03036				Bacteria	1TPV7@1239,3F3YA@33958,4H9MW@91061,COG0593@1,COG0593@2	NA|NA|NA	L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PAPOILPD_00844	353496.LBU_0002	1.3e-199	702.2	Lactobacillaceae	dnaN		2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TQ7J@1239,3F3ZQ@33958,4H9TF@91061,COG0592@1,COG0592@2	NA|NA|NA	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
PAPOILPD_00845	353496.LBU_0003	2.2e-37	161.0	Lactobacillaceae	yaaA	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K14761					ko00000,ko03009				Bacteria	1VEJ2@1239,3F803@33958,4HNMC@91061,COG2501@1,COG2501@2	NA|NA|NA	S	S4 domain protein YaaA
PAPOILPD_00846	353496.LBU_0004	3.8e-207	727.2	Lactobacillaceae	recF	GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576		ko:K03629	ko03440,map03440				ko00000,ko00001,ko03400				Bacteria	1TP9U@1239,3F3Q1@33958,4HA0W@91061,COG1195@1,COG1195@2	NA|NA|NA	L	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PAPOILPD_00847	353496.LBU_0005	0.0	1288.1	Lactobacillaceae	gyrB	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363	5.99.1.3	ko:K02470,ko:K02622					ko00000,ko01000,ko02048,ko03032,ko03036,ko03400				Bacteria	1TQ0R@1239,3F48M@33958,4H9Y6@91061,COG0187@1,COG0187@2	NA|NA|NA	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PAPOILPD_00848	353496.LBU_0006	0.0	1591.6	Lactobacillaceae	gyrA	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363	5.99.1.3	ko:K02469,ko:K02621					ko00000,ko01000,ko02048,ko03032,ko03036,ko03400				Bacteria	1TP2Z@1239,3F3YM@33958,4HAHY@91061,COG0188@1,COG0188@2	NA|NA|NA	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PAPOILPD_00849	353496.LBU_0007	5.1e-47	193.4	Lactobacillaceae	rpsF	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904		ko:K02990	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011,ko03029				Bacteria	1VA18@1239,3FCDH@33958,4HP6B@91061,COG0360@1,COG0360@2	NA|NA|NA	J	Binds together with S18 to 16S ribosomal RNA
PAPOILPD_00850	353496.LBU_0008	3.8e-86	324.3	Lactobacillaceae	ssb			ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440				ko00000,ko00001,ko03029,ko03032,ko03400				Bacteria	1V3WT@1239,3F66N@33958,4HH8I@91061,COG0629@1,COG0629@2	NA|NA|NA	L	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PAPOILPD_00851	1293597.BN147_05550	1.1e-34	152.1	Lactobacillaceae	rpsR	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02963,ko:K03111,ko:K15125	ko03010,ko03030,ko03430,ko03440,ko05133,map03010,map03030,map03430,map03440,map05133	M00178			br01610,ko00000,ko00001,ko00002,ko00536,ko03011,ko03029,ko03032,ko03400				Bacteria	1V9XS@1239,3F7CY@33958,4HKCC@91061,COG0238@1,COG0238@2	NA|NA|NA	J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PAPOILPD_00852	390333.Ldb0010	0.0	1275.0	Lactobacillaceae	yybT												Bacteria	1TPGP@1239,3F3TY@33958,4HBVH@91061,COG3887@1,COG3887@2	NA|NA|NA	T	signaling protein consisting of a modified GGDEF domain and a DHH domain
PAPOILPD_00853	353496.LBU_0011	2.9e-73	281.2	Lactobacillaceae	rplI	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02939	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6QG@1239,3F68P@33958,4HIKJ@91061,COG0359@1,COG0359@2	NA|NA|NA	J	Binds to the 23S rRNA
PAPOILPD_00854	390333.Ldb0012	4.9e-249	866.7	Lactobacillaceae	dnaB	GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112				ko00000,ko00001,ko01000,ko03032				Bacteria	1TPCT@1239,3F4MW@33958,4H9Y8@91061,COG0305@1,COG0305@2	NA|NA|NA	L	Participates in initiation and elongation during chromosome replication
PAPOILPD_00855	390333.Ldb0013	7.1e-225	786.2	Lactobacillaceae	MA20_36090												Bacteria	1UF81@1239,3FBSW@33958,4HI1Q@91061,COG1073@1,COG1073@2	NA|NA|NA	S	Protein of unknown function (DUF2974)
PAPOILPD_00856	353496.LBU_0262	1.2e-73	282.3	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TRNY@1239,3F431@33958,4HBKP@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_00857	353496.LBU_0262	1.1e-98	366.3	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TRNY@1239,3F431@33958,4HBKP@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_00859	390333.Ldb0017	1.4e-119	435.6	Lactobacillaceae	yhiD	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K07507					ko00000,ko02000	9.B.20			Bacteria	1V409@1239,3F3QE@33958,4HK8H@91061,COG1285@1,COG1285@2	NA|NA|NA	S	MgtC family
PAPOILPD_00861	390333.Ldb2205	4.4e-92	344.0	Lactobacillaceae													Bacteria	1U75C@1239,29PWZ@1,30AVA@2,3F902@33958,4IH01@91061	NA|NA|NA		
PAPOILPD_00862	390333.Ldb2204	1.1e-50	205.7	Lactobacillaceae													Bacteria	1U5CG@1239,29V6Q@1,309MR@2,3F5IP@33958,4IF3N@91061	NA|NA|NA		
PAPOILPD_00863	148814.JI66_01870	1.7e-13	83.2	Bacteria													Bacteria	COG5549@1,COG5549@2	NA|NA|NA	O	protein import
PAPOILPD_00864	1293597.BN147_02640	1.9e-96	360.1	Lactobacillaceae	msbA2		3.6.3.44	ko:K06147,ko:K18104	ko01501,ko02010,map01501,map02010	M00700			ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	3.A.1.106,3.A.1.109,3.A.1.117,3.A.1.123,3.A.1.21			Bacteria	1TSY4@1239,3FC4S@33958,4HAJQ@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
PAPOILPD_00865	390333.Ldb0032	2.5e-118	433.3	Lactobacillaceae													Bacteria	1TSH3@1239,3F7MT@33958,4HGIJ@91061,COG0515@1,COG0515@2	NA|NA|NA	KLT	Protein kinase domain
PAPOILPD_00868	1033837.WANG_0201	9.2e-75	287.7	Lactobacillaceae			2.7.13.3	ko:K07706	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1V1ET@1239,3F71I@33958,4HGNA@91061,COG3290@1,COG3290@2	NA|NA|NA	T	GHKL domain
PAPOILPD_00869	1033837.WANG_0202	1e-73	283.5	Lactobacillaceae				ko:K07707	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko02022				Bacteria	1V392@1239,3F6AD@33958,4HHAI@91061,COG3279@1,COG3279@2	NA|NA|NA	K	LytTr DNA-binding domain
PAPOILPD_00870	390333.Ldb2201	4.9e-258	896.7	Lactobacillaceae	clcA	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006821,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015672,GO:0015698,GO:0015706,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0031404,GO:0034220,GO:0042802,GO:0043167,GO:0043168,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071705,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600		ko:K03281,ko:K03499					ko00000,ko02000	2.A.38.1,2.A.38.4,2.A.49		iAF1260.b0155,iB21_1397.B21_00153,iBWG_1329.BWG_0148,iE2348C_1286.E2348C_0162,iEC042_1314.EC042_0155,iEC55989_1330.EC55989_0149,iECBD_1354.ECBD_3463,iECDH10B_1368.ECDH10B_0135,iECDH1ME8569_1439.ECDH1ME8569_0149,iECD_1391.ECD_00154,iECIAI1_1343.ECIAI1_0153,iECO103_1326.ECO103_0155,iECSE_1348.ECSE_0156,iECUMN_1333.ECUMN_0152,iECW_1372.ECW_m0152,iEKO11_1354.EKO11_3761,iETEC_1333.ETEC_0151,iEcDH1_1363.EcDH1_3447,iEcE24377_1341.EcE24377A_0160,iEcolC_1368.EcolC_3504,iJO1366.b0155,iSSON_1240.SSON_0167,iUMNK88_1353.UMNK88_159,iWFL_1372.ECW_m0152,iY75_1357.Y75_RS00790,iZ_1308.Z0166	Bacteria	1TPX0@1239,3F3MU@33958,4HD2H@91061,COG0038@1,COG0038@2,COG0569@1,COG0569@2	NA|NA|NA	P	chloride
PAPOILPD_00871	1293597.BN147_02480	7.6e-57	226.5	Lactobacillaceae				ko:K07497					ko00000				Bacteria	1TQQY@1239,3F59Y@33958,4HBHG@91061,COG2801@1,COG2801@2	NA|NA|NA	L	PFAM Integrase catalytic region
PAPOILPD_00872	390333.Ldb2201	5.5e-241	840.1	Lactobacillaceae	clcA	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006821,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015672,GO:0015698,GO:0015706,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0031404,GO:0034220,GO:0042802,GO:0043167,GO:0043168,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071705,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600		ko:K03281,ko:K03499					ko00000,ko02000	2.A.38.1,2.A.38.4,2.A.49		iAF1260.b0155,iB21_1397.B21_00153,iBWG_1329.BWG_0148,iE2348C_1286.E2348C_0162,iEC042_1314.EC042_0155,iEC55989_1330.EC55989_0149,iECBD_1354.ECBD_3463,iECDH10B_1368.ECDH10B_0135,iECDH1ME8569_1439.ECDH1ME8569_0149,iECD_1391.ECD_00154,iECIAI1_1343.ECIAI1_0153,iECO103_1326.ECO103_0155,iECSE_1348.ECSE_0156,iECUMN_1333.ECUMN_0152,iECW_1372.ECW_m0152,iEKO11_1354.EKO11_3761,iETEC_1333.ETEC_0151,iEcDH1_1363.EcDH1_3447,iEcE24377_1341.EcE24377A_0160,iEcolC_1368.EcolC_3504,iJO1366.b0155,iSSON_1240.SSON_0167,iUMNK88_1353.UMNK88_159,iWFL_1372.ECW_m0152,iY75_1357.Y75_RS00790,iZ_1308.Z0166	Bacteria	1TPX0@1239,3F3MU@33958,4HD2H@91061,COG0038@1,COG0038@2,COG0569@1,COG0569@2	NA|NA|NA	P	chloride
PAPOILPD_00873	525365.HMPREF0548_0587	1.7e-09	67.8	Lactobacillaceae													Bacteria	1U6BA@1239,2DKPI@1,30A82@2,3F7I5@33958,4IG2X@91061	NA|NA|NA		
PAPOILPD_00874	592026.GCWU0000282_002029	1e-101	376.7	Clostridia			3.6.4.12	ko:K03655	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1TSPK@1239,24B9Q@186801,COG2865@1,COG2865@2	NA|NA|NA	K	Psort location Cytoplasmic, score 8.87
PAPOILPD_00875	390333.Ldb0159	1.6e-37	163.3	Lactobacillaceae	mutR			ko:K20373,ko:K20375	ko02024,map02024				ko00000,ko00001,ko03000				Bacteria	1U54X@1239,3F4P7@33958,4IEW2@91061,COG1396@1,COG1396@2	NA|NA|NA	K	Helix-turn-helix XRE-family like proteins
PAPOILPD_00876	390333.Ldb1987	0.0	1116.3	Lactobacillaceae													Bacteria	1UHBN@1239,3F9JN@33958,4IRVC@91061,COG5421@1,COG5421@2	NA|NA|NA	L	Transposase DDE domain
PAPOILPD_00877	1293597.BN147_07175	4.1e-31	140.2	Lactobacillaceae													Bacteria	1U7QT@1239,29Q9G@1,30B8K@2,3FA13@33958,4IHN3@91061	NA|NA|NA		
PAPOILPD_00878	353496.LBU_1022	6.3e-175	620.2	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_00879	562743.JH976434_gene1758	2e-131	475.7	Bacilli			2.7.7.73,2.7.7.80	ko:K03148,ko:K21029	ko00730,ko01100,ko04122,map00730,map01100,map04122		R07459	RC00043	ko00000,ko00001,ko01000				Bacteria	1TQ3U@1239,4HBGP@91061,COG0476@1,COG0476@2	NA|NA|NA	H	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
PAPOILPD_00880	543734.LCABL_30350	8.8e-88	330.9	Bacilli													Bacteria	1UM0A@1239,4ITNK@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00881	353496.LBU_1783	1.2e-223	782.3	Lactobacillaceae	pbuG			ko:K06901					ko00000,ko02000	2.A.1.40			Bacteria	1TQC6@1239,3F44D@33958,4HANG@91061,COG2252@1,COG2252@2	NA|NA|NA	S	permease
PAPOILPD_00882	353496.LBU_1782	5.5e-138	496.9	Lactobacillaceae	glnQ		3.6.3.21	ko:K02028,ko:K10038	ko02010,map02010	M00227,M00236			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.2			Bacteria	1TNYD@1239,3F3QQ@33958,4H9WY@91061,COG1126@1,COG1126@2	NA|NA|NA	E	ABC transporter, ATP-binding protein
PAPOILPD_00883	390333.Ldb2198	5.2e-257	893.3	Lactobacillaceae	glnP			ko:K02029,ko:K02030,ko:K17073,ko:K17074	ko02010,map02010	M00236,M00589			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.20			Bacteria	1TQUG@1239,3F4HA@33958,4HAJ5@91061,COG0765@1,COG0765@2,COG0834@1,COG0834@2	NA|NA|NA	P	ABC transporter
PAPOILPD_00884	353496.LBU_1780	1.9e-124	451.8	Lactobacillaceae	dgk		2.7.1.74,2.7.1.76	ko:K00893,ko:K10353	ko00230,ko00240,ko01100,map00230,map00240,map01100		R00185,R01666,R02089	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	1TPJ1@1239,3F488@33958,4HA9N@91061,COG1428@1,COG1428@2	NA|NA|NA	F	deoxynucleoside kinase
PAPOILPD_00885	390333.Ldb2196	9.6e-118	429.5	Lactobacillaceae	dak		2.7.1.74,2.7.1.76	ko:K00893,ko:K10353	ko00230,ko00240,ko01100,map00230,map00240,map01100		R00185,R01666,R02089	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	1TPJ1@1239,3F488@33958,4HA9N@91061,COG1428@1,COG1428@2	NA|NA|NA	F	deoxynucleoside kinase
PAPOILPD_00887	390333.Ldb2190	3.6e-123	447.6	Lactobacillaceae	nagB	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006040,GO:0008150,GO:0008152,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135	3.1.1.31,3.5.99.6	ko:K01057,ko:K02564	ko00030,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00520,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R00765,R02035	RC00163,RC00537	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP10@1239,3F3NR@33958,4HAG4@91061,COG0363@1,COG0363@2	NA|NA|NA	G	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
PAPOILPD_00888	353496.LBU_1774	2.1e-149	535.0	Lactobacillaceae	yeaE												Bacteria	1TPM1@1239,3FB4R@33958,4HU74@91061,COG0656@1,COG0656@2	NA|NA|NA	S	Aldo/keto reductase family
PAPOILPD_00890	1293597.BN147_05685	1e-107	396.4	Lactobacillaceae				ko:K18926		M00715			ko00000,ko00002,ko02000	2.A.1.3.30			Bacteria	1UYQB@1239,3F3NG@33958,4HE3Y@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00891	1293597.BN147_05685	8.8e-47	193.0	Lactobacillaceae				ko:K18926		M00715			ko00000,ko00002,ko02000	2.A.1.3.30			Bacteria	1UYQB@1239,3F3NG@33958,4HE3Y@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00892	1293597.BN147_05685	2.4e-08	63.5	Lactobacillaceae				ko:K18926		M00715			ko00000,ko00002,ko02000	2.A.1.3.30			Bacteria	1UYQB@1239,3F3NG@33958,4HE3Y@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00893	353496.LBU_0853	1.1e-57	229.6	Lactobacillaceae	ypmB												Bacteria	1VA2H@1239,3F4MM@33958,4HNMM@91061,COG5353@1,COG5353@2	NA|NA|NA	S	Protein conserved in bacteria
PAPOILPD_00894	353496.LBU_0854	3.5e-257	893.6	Lactobacillaceae	asnS	GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.22	ko:K01893	ko00970,map00970	M00359,M00360	R03648	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TP38@1239,3F4EK@33958,4H9YH@91061,COG0017@1,COG0017@2	NA|NA|NA	J	Asparaginyl-tRNA synthetase
PAPOILPD_00895	390333.Ldb1005	1.8e-113	415.2	Lactobacillaceae	dnaD			ko:K02086					ko00000				Bacteria	1V283@1239,3F4FF@33958,4HFP3@91061,COG3935@1,COG3935@2	NA|NA|NA	L	DnaD domain protein
PAPOILPD_00896	353496.LBU_0856	3.8e-108	397.5	Lactobacillaceae	nth		4.2.99.18	ko:K10773	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	1TRAK@1239,3F42U@33958,4HATD@91061,COG0177@1,COG0177@2	NA|NA|NA	L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PAPOILPD_00897	353496.LBU_0857	1.8e-147	528.5	Lactobacillaceae													Bacteria	1UYU8@1239,3FBDJ@33958,4HFSJ@91061,COG0561@1,COG0561@2	NA|NA|NA	S	Sucrose-6F-phosphate phosphohydrolase
PAPOILPD_00898	353496.LBU_0858	1.1e-65	255.8	Firmicutes													Bacteria	1V1UH@1239,COG0657@1,COG0657@2	NA|NA|NA	I	Psort location Cytoplasmic, score
PAPOILPD_00899	33035.JPJF01000008_gene1189	2.3e-35	155.2	Blautia													Bacteria	1V1UH@1239,248MF@186801,3Y1Q0@572511,COG0657@1,COG0657@2	NA|NA|NA	I	alpha/beta hydrolase fold
PAPOILPD_00900	390333.Ldb1010	7e-189	666.4	Lactobacillaceae	ldhA		1.1.1.28	ko:K03778	ko00620,ko01120,map00620,map01120		R00704	RC00044	ko00000,ko00001,ko01000				Bacteria	1TSZ6@1239,3F4US@33958,4HCIS@91061,COG1052@1,COG1052@2	NA|NA|NA	CH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAPOILPD_00901	353496.LBU_0861	0.0	1327.8	Lactobacillaceae	dap2		3.4.19.1	ko:K01303					ko00000,ko01000,ko01002				Bacteria	1TR2N@1239,3F59I@33958,4H9RR@91061,COG1506@1,COG1506@2	NA|NA|NA	E	Prolyl oligopeptidase family
PAPOILPD_00902	353496.LBU_0862	0.0	1320.1	Lactobacillaceae	ponA	GO:0005575,GO:0005576	2.4.1.129,3.4.16.4	ko:K05365,ko:K05366,ko:K12555,ko:K21464	ko00550,ko01100,ko01501,map00550,map01100,map01501		R04519	RC00005,RC00049	ko00000,ko00001,ko01000,ko01003,ko01011		GT51		Bacteria	1TPM5@1239,3F424@33958,4H9SA@91061,COG0744@1,COG0744@2	NA|NA|NA	M	penicillin-binding protein 1A
PAPOILPD_00903	353496.LBU_0863	8.6e-116	422.9	Lactobacillaceae	recU	GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360		ko:K03700					ko00000,ko03400				Bacteria	1V3S4@1239,3F4DG@33958,4HGZ7@91061,COG3331@1,COG3331@2	NA|NA|NA	L	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
PAPOILPD_00904	353496.LBU_0864	5.3e-80	303.5	Lactobacillaceae	ypsA												Bacteria	1V6SM@1239,3F4MR@33958,4HJGM@91061,COG4474@1,COG4474@2	NA|NA|NA	S	Belongs to the UPF0398 family
PAPOILPD_00905	353496.LBU_0865	1.1e-54	219.5	Lactobacillaceae	gpsB			ko:K04074					ko00000,ko03036				Bacteria	1VEQ4@1239,3F6VZ@33958,4HNP1@91061,COG3599@1,COG3599@2	NA|NA|NA	D	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
PAPOILPD_00906	353496.LBU_0866	1e-212	745.7	Lactobacillaceae	rlmL	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016423,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360	2.1.1.173,2.1.1.264	ko:K07444,ko:K12297			R07234	RC00003	ko00000,ko01000,ko03009				Bacteria	1TP0X@1239,3F3NZ@33958,4HBKY@91061,COG0116@1,COG0116@2	NA|NA|NA	L	Belongs to the methyltransferase superfamily
PAPOILPD_00907	353496.LBU_0867	3e-173	614.8	Lactobacillaceae	XK27_01810												Bacteria	1UQCQ@1239,3F483@33958,4HG8Z@91061,COG1409@1,COG1409@2	NA|NA|NA	S	Calcineurin-like phosphoesterase
PAPOILPD_00908	390333.Ldb1019	7.3e-56	223.0	Lactobacillaceae													Bacteria	1U6UZ@1239,29PP8@1,30AME@2,3F8IU@33958,4IGNU@91061	NA|NA|NA		
PAPOILPD_00909	353496.LBU_0869	0.0	1094.0	Lactobacillaceae	fhs		6.3.4.3	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R00943	RC00026,RC00111	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP6N@1239,3F3U6@33958,4HA2X@91061,COG2759@1,COG2759@2	NA|NA|NA	F	Belongs to the formate--tetrahydrofolate ligase family
PAPOILPD_00910	353496.LBU_0870	7.1e-64	250.0	Lactobacillaceae	lspA		3.4.23.36	ko:K03101	ko03060,map03060				ko00000,ko00001,ko01000,ko01002				Bacteria	1VA9R@1239,3F66R@33958,4HIR4@91061,COG0597@1,COG0597@2	NA|NA|NA	MU	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PAPOILPD_00911	353496.LBU_0871	4.8e-168	597.0	Lactobacillaceae	rluD	GO:0000027,GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022607,GO:0022613,GO:0022618,GO:0031118,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360	5.4.99.23	ko:K06180					ko00000,ko01000,ko03009			iE2348C_1286.E2348C_2868,iECED1_1282.ECED1_3035,iECSF_1327.ECSF_2432	Bacteria	1TPCM@1239,3F3P6@33958,4HBG2@91061,COG0564@1,COG0564@2	NA|NA|NA	J	Responsible for synthesis of pseudouridine from uracil
PAPOILPD_00912	353496.LBU_0872	1.5e-194	685.3	Lactobacillaceae	carA	GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0040007,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494	6.3.5.5	ko:K01955,ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv1383,iYO844.BSU15510	Bacteria	1TQ8N@1239,3F43R@33958,4H9Z0@91061,COG0505@1,COG0505@2	NA|NA|NA	F	Carbamoyl-phosphate synthetase glutamine chain
PAPOILPD_00913	390333.Ldb1024	0.0	2042.3	Lactobacillaceae	carB1		6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPID@1239,3F3MD@33958,4HAEY@91061,COG0458@1,COG0458@2	NA|NA|NA	F	Carbamoyl-phosphate synthase
PAPOILPD_00914	390333.Ldb1025	3.7e-42	177.2	Lactobacillaceae	gcvR			ko:K07166					ko00000				Bacteria	1VENW@1239,3F811@33958,4HNJ4@91061,COG3830@1,COG3830@2	NA|NA|NA	T	Belongs to the UPF0237 family
PAPOILPD_00915	353496.LBU_0875	8.4e-246	855.9	Lactobacillaceae	XK27_08635			ko:K09157					ko00000				Bacteria	1TQG8@1239,3F4H2@33958,4HBTU@91061,COG2848@1,COG2848@2	NA|NA|NA	S	UPF0210 protein
PAPOILPD_00916	390333.Ldb1027	2.9e-304	1050.4	Lactobacillaceae	FbpA			ko:K12341	ko03070,map03070				ko00000,ko00001,ko02044	1.B.40.1.1			Bacteria	1TQ8A@1239,3F3PS@33958,4H9UF@91061,COG1293@1,COG1293@2	NA|NA|NA	K	Fibronectin-binding protein
PAPOILPD_00917	353496.LBU_0877	6.9e-156	556.6	Lactobacillaceae	degV												Bacteria	1TRM7@1239,3F40W@33958,4HBIR@91061,COG1307@1,COG1307@2	NA|NA|NA	S	EDD domain protein, DegV family
PAPOILPD_00918	390333.Ldb1030	9.2e-179	632.9	Lactobacillaceae													Bacteria	1U5CK@1239,2ACE2@1,311ZJ@2,3F5IZ@33958,4IF3R@91061	NA|NA|NA		
PAPOILPD_00919	353496.LBU_0480	5.5e-298	1029.6	Lactobacillaceae	ptsI	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006810,GO:0008150,GO:0008643,GO:0008965,GO:0009401,GO:0016740,GO:0016772,GO:0016775,GO:0019197,GO:0032991,GO:0042802,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0051179,GO:0051234,GO:0071702	2.7.3.9	ko:K08483	ko02060,map02060				ko00000,ko00001,ko01000,ko02000	8.A.7		iB21_1397.B21_02277,iE2348C_1286.E2348C_2602,iEC042_1314.EC042_2625,iECBD_1354.ECBD_1265,iECB_1328.ECB_02316,iECD_1391.ECD_02316,iECH74115_1262.ECH74115_3647,iECIAI1_1343.ECIAI1_2474,iECIAI39_1322.ECIAI39_2562,iECO103_1326.ECO103_2935,iECO111_1330.ECO111_3146,iECO26_1355.ECO26_3469,iECP_1309.ECP_2440,iECSE_1348.ECSE_2707,iECSP_1301.ECSP_3364,iECUMN_1333.ECUMN_2738,iECW_1372.ECW_m2645,iECs_1301.ECs3288,iEKO11_1354.EKO11_1312,iEcE24377_1341.EcE24377A_2703,iEcHS_1320.EcHS_A2551,iEcSMS35_1347.EcSMS35_2571,iEcolC_1368.EcolC_1262,iLF82_1304.LF82_1770,iNRG857_1313.NRG857_12115,iSBO_1134.SBO_2440,iSDY_1059.SDY_2613,iSFV_1184.SFV_2468,iSF_1195.SF2471,iSFxv_1172.SFxv_2720,iSSON_1240.SSON_2505,iS_1188.S2617,iUMNK88_1353.UMNK88_3018,iWFL_1372.ECW_m2645,iZ_1308.Z3682	Bacteria	1TPK8@1239,3F3MS@33958,4H9VD@91061,COG1080@1,COG1080@2	NA|NA|NA	G	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAPOILPD_00920	1293597.BN147_02320	1.8e-38	164.9	Lactobacillaceae	ptsH	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043610,GO:0044424,GO:0044464,GO:0050789,GO:0065007		ko:K11189					ko00000,ko02000	4.A.2.1			Bacteria	1VA0R@1239,3F6XQ@33958,4HKGA@91061,COG1925@1,COG1925@2	NA|NA|NA	G	phosphocarrier protein HPR
PAPOILPD_00921	585524.HMPREF0493_1514	9e-11	72.4	Lactobacillaceae													Bacteria	1U6MM@1239,29PIA@1,30AGF@2,3F85J@33958,4IGEE@91061	NA|NA|NA		
PAPOILPD_00922	353496.LBU_0477	0.0	1213.4	Lactobacillaceae	clpE	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03697					ko00000,ko03110				Bacteria	1TPMU@1239,3F3K9@33958,4HA0V@91061,COG0542@1,COG0542@2	NA|NA|NA	O	Belongs to the ClpA ClpB family
PAPOILPD_00923	353496.LBU_0476	7.3e-43	179.5	Lactobacillaceae	XK27_09445												Bacteria	1VFRS@1239,2EBZ8@1,335YI@2,3F70G@33958,4HNUK@91061	NA|NA|NA	S	Domain of unknown function (DUF1827)
PAPOILPD_00924	353496.LBU_0475	1.4e-279	968.4	Lactobacillaceae	mco												Bacteria	1TQSU@1239,3F3XB@33958,4HDD6@91061,COG2132@1,COG2132@2	NA|NA|NA	Q	Multicopper oxidase
PAPOILPD_00925	390333.Ldb0567	5.5e-26	122.9	Lactobacillaceae													Bacteria	1U71W@1239,29Q02@1,30ASJ@2,3F8VE@33958,4IGWC@91061	NA|NA|NA		
PAPOILPD_00926	353496.LBU_0473	6.1e-304	1049.3	Lactobacillaceae	prfC	GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016150,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02837,ko:K07133					ko00000,ko03012				Bacteria	1TPYT@1239,3F489@33958,4HADS@91061,COG4108@1,COG4108@2	NA|NA|NA	J	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PAPOILPD_00927	353496.LBU_0472	6.3e-154	550.1	Lactobacillaceae	hlyX			ko:K03699					ko00000,ko02042				Bacteria	1TPN0@1239,3F3KG@33958,4H9SB@91061,COG1253@1,COG1253@2	NA|NA|NA	S	Transporter associated domain
PAPOILPD_00928	353496.LBU_0471	1.8e-70	271.9	Lactobacillaceae													Bacteria	1U5U1@1239,2C070@1,300GJ@2,3F6I5@33958,4IFHZ@91061	NA|NA|NA		
PAPOILPD_00929	353496.LBU_0470	1e-84	319.3	Lactobacillaceae													Bacteria	1U5P0@1239,29NVN@1,309TR@2,3F693@33958,4IFDJ@91061	NA|NA|NA		
PAPOILPD_00930	353496.LBU_0469	4e-142	510.8	Lactobacillaceae	recX	GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019899,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496	2.4.1.337	ko:K03565,ko:K19002	ko00561,ko01100,map00561,map01100		R10850	RC00005,RC00059	ko00000,ko00001,ko01000,ko01003,ko03400		GT4		Bacteria	1V72V@1239,3F4BY@33958,4HJ7R@91061,COG2137@1,COG2137@2	NA|NA|NA	S	Regulatory protein RecX
PAPOILPD_00931	390333.Ldb0561	2.6e-242	844.3	Lactobacillaceae	rumA		2.1.1.190,2.1.1.35	ko:K00557,ko:K03215					ko00000,ko01000,ko03009,ko03016				Bacteria	1TP4H@1239,3F4GQ@33958,4HA6M@91061,COG2265@1,COG2265@2	NA|NA|NA	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PAPOILPD_00932	390333.Ldb0560	2.9e-179	634.4	Lactobacillaceae				ko:K06889					ko00000				Bacteria	1TQYU@1239,3F43H@33958,4HC4H@91061,COG1073@1,COG1073@2	NA|NA|NA	D	Alpha beta
PAPOILPD_00933	1293597.BN147_05215	9.7e-19	99.4	Lactobacillaceae													Bacteria	1U6EZ@1239,29PCT@1,30AB1@2,3F7RU@33958,4IG6T@91061	NA|NA|NA		
PAPOILPD_00934	390333.Ldb0558	2.6e-166	591.3	Lactobacillaceae	galU		2.7.7.9	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	M00129,M00361,M00362,M00549	R00289	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQ24@1239,3F45A@33958,4HATY@91061,COG1210@1,COG1210@2	NA|NA|NA	M	UTP-glucose-1-phosphate uridylyltransferase
PAPOILPD_00935	390333.Ldb0557	8.8e-162	576.2	Lactobacillaceae	yihY			ko:K07058					ko00000				Bacteria	1U7HM@1239,3F4TC@33958,4H9MJ@91061,COG1295@1,COG1295@2	NA|NA|NA	S	Belongs to the UPF0761 family
PAPOILPD_00936	353496.LBU_0464	2.3e-161	574.7	Lactobacillaceae	map	GO:0000096,GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006508,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009066,GO:0009987,GO:0010467,GO:0016151,GO:0016485,GO:0016787,GO:0019538,GO:0019752,GO:0030145,GO:0035551,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050897,GO:0051604,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564,GO:1901605	3.4.11.18	ko:K01265					ko00000,ko01000,ko01002				Bacteria	1TQC1@1239,3F3MK@33958,4H9S9@91061,COG0024@1,COG0024@2	NA|NA|NA	E	Methionine Aminopeptidase
PAPOILPD_00937	353496.LBU_0463	4.2e-77	293.9	Lactobacillaceae	fld			ko:K03839					ko00000				Bacteria	1V7AG@1239,3F6HY@33958,4HMJF@91061,COG0716@1,COG0716@2	NA|NA|NA	C	Flavodoxin
PAPOILPD_00938	1293597.BN147_05240	4.4e-64	250.8	Lactobacillaceae	gtcA	GO:0000166,GO:0003674,GO:0003824,GO:0003870,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008883,GO:0009058,GO:0009987,GO:0016020,GO:0016410,GO:0016491,GO:0016620,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016749,GO:0016903,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0036094,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0046148,GO:0046483,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:0097159,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576											Bacteria	1VESW@1239,3F4GH@33958,4HNK7@91061,COG2246@1,COG2246@2	NA|NA|NA	S	Teichoic acid glycosylation protein
PAPOILPD_00939	353496.LBU_0461	2.8e-210	737.6	Lactobacillaceae	mnaA		5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005				Bacteria	1TQZT@1239,3F3KQ@33958,4HBI3@91061,COG0381@1,COG0381@2	NA|NA|NA	G	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
PAPOILPD_00940	390333.Ldb0552	1.7e-22	111.3	Lactobacillaceae													Bacteria	1U86J@1239,29QJ4@1,30BIP@2,3FAKZ@33958,4II43@91061	NA|NA|NA		
PAPOILPD_00941	1293597.BN147_09850	4.1e-270	936.8	Lactobacillaceae				ko:K20265	ko02024,map02024				ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3			Bacteria	1UYSD@1239,3F48U@33958,4IPMN@91061,COG0531@1,COG0531@2	NA|NA|NA	E	Amino acid permease
PAPOILPD_00943	353496.LBU_0458	0.0	1402.1	Lactobacillaceae	yaaO		4.1.1.17,4.1.1.19	ko:K01581,ko:K01585	ko00330,ko00480,ko01100,ko01110,ko01130,map00330,map00480,map01100,map01110,map01130	M00133,M00134	R00566,R00670	RC00299	ko00000,ko00001,ko00002,ko01000				Bacteria	1TNZ9@1239,3F3TV@33958,4HBGC@91061,COG1982@1,COG1982@2	NA|NA|NA	E	Orn/Lys/Arg decarboxylase, C-terminal domain
PAPOILPD_00944	353496.LBU_0457	3.3e-228	797.3	Lactobacillaceae	ynbB	GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0016740,GO:0016765,GO:0016829,GO:0016846	4.4.1.1	ko:K01758	ko00260,ko00270,ko00450,ko01100,ko01130,ko01230,map00260,map00270,map00450,map01100,map01130,map01230	M00338	R00782,R01001,R02408,R04770,R04930,R09366	RC00056,RC00069,RC00348,RC00382,RC00710,RC01209,RC01210,RC01245,RC02303	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1TQ88@1239,3F3PU@33958,4HAF5@91061,COG4100@1,COG4100@2	NA|NA|NA	P	aluminum resistance
PAPOILPD_00945	353496.LBU_0456	1.5e-231	808.5	Lactobacillaceae	pyrP			ko:K02824,ko:K16169					ko00000,ko02000	2.A.40.1.1,2.A.40.1.2,2.A.40.3.1		iLJ478.TM0819	Bacteria	1TQKX@1239,3F3UJ@33958,4HAEU@91061,COG2233@1,COG2233@2	NA|NA|NA	F	Permease
PAPOILPD_00946	353496.LBU_0455	5.9e-60	236.9	Lactobacillaceae	pfoS			ko:K07035					ko00000				Bacteria	1TS5F@1239,3FCB4@33958,4HAK5@91061,COG3641@1,COG3641@2	NA|NA|NA	S	Phosphotransferase system, EIIC
PAPOILPD_00947	390333.Ldb0464	4.1e-113	414.1	Lactobacillaceae	acmC		3.2.1.17,3.2.1.96	ko:K01185,ko:K01227,ko:K02395	ko00511,map00511				ko00000,ko00001,ko01000,ko02035				Bacteria	1V7JY@1239,3F584@33958,4HIY4@91061,COG1705@1,COG1705@2	NA|NA|NA	NU	mannosyl-glycoprotein
PAPOILPD_00948	353496.LBU_0381	9.1e-102	376.3	Lactobacillaceae													Bacteria	1V2ZW@1239,3FBM9@33958,4IR4I@91061,COG4684@1,COG4684@2	NA|NA|NA	S	ECF transporter, substrate-specific component
PAPOILPD_00950	390333.Ldb0461	1.3e-87	328.9	Lactobacillaceae	ydcK			ko:K03095					ko00000				Bacteria	1V6NU@1239,3F703@33958,4HIHY@91061,COG3091@1,COG3091@2	NA|NA|NA	S	Belongs to the SprT family
PAPOILPD_00951	353496.LBU_0379	6.9e-87	326.6	Lactobacillaceae				ko:K01990		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1V3VW@1239,3F6C1@33958,4HH3J@91061,COG1131@1,COG1131@2	NA|NA|NA	V	ABC transporter
PAPOILPD_00952	97137.C821_01352	6e-15	87.8	Lactobacillaceae													Bacteria	1U6PE@1239,2BUJ4@1,32PVG@2,3F893@33958,4IGGD@91061	NA|NA|NA		
PAPOILPD_00953	353496.LBU_0376	0.0	1628.6	Lactobacillaceae	pacL		3.6.3.8	ko:K01537					ko00000,ko01000	3.A.3.2			Bacteria	1TPF5@1239,3F3KP@33958,4H9S5@91061,COG0474@1,COG0474@2	NA|NA|NA	P	P-type ATPase
PAPOILPD_00954	353496.LBU_0375	5.3e-150	537.0	Lactobacillaceae	nadE	GO:0003674,GO:0003824,GO:0003952,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0016884,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0033554,GO:0034355,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043094,GO:0043173,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	6.3.1.5	ko:K01916	ko00760,ko01100,map00760,map01100	M00115	R00189	RC00100	ko00000,ko00001,ko00002,ko01000			iECSE_1348.ECSE_1910,iECW_1372.ECW_m1909,iEKO11_1354.EKO11_2035,iETEC_1333.ETEC_1772,iEcE24377_1341.EcE24377A_1961,iSFV_1184.SFV_1480,iSF_1195.SF1486,iSFxv_1172.SFxv_1676,iSSON_1240.SSON_1418,iS_1188.S1603,iWFL_1372.ECW_m1909	Bacteria	1TQ38@1239,3F43Z@33958,4HA2R@91061,COG0171@1,COG0171@2	NA|NA|NA	F	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
PAPOILPD_00955	390333.Ldb0454	1.2e-134	485.7	Lactobacillaceae													Bacteria	1V9J7@1239,3F4U2@33958,4HIAM@91061,COG3774@1,COG3774@2	NA|NA|NA	M	Glycosyltransferase sugar-binding region containing DXD motif
PAPOILPD_00956	353496.LBU_0373	3.4e-200	704.1	Lactobacillaceae	csaB												Bacteria	1UHSF@1239,3F428@33958,4HB04@91061,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyl transferases group 1
PAPOILPD_00957	353496.LBU_0372	2.9e-131	474.6	Lactobacillaceae	tagA		2.4.1.187	ko:K05946	ko05111,map05111				ko00000,ko00001,ko01000,ko01003		GT26		Bacteria	1V3QV@1239,3F4WB@33958,4HH6B@91061,COG1922@1,COG1922@2	NA|NA|NA	F	Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid
PAPOILPD_00958	390333.Ldb0451	5.1e-257	893.3	Lactobacillaceae	epsU												Bacteria	1TRTX@1239,3FB7P@33958,4HDWM@91061,COG2244@1,COG2244@2	NA|NA|NA	S	Polysaccharide biosynthesis protein
PAPOILPD_00959	390333.Ldb0450	4.7e-221	773.5	Lactobacillaceae													Bacteria	1VD8C@1239,3F52X@33958,4HI8C@91061,COG1887@1,COG1887@2	NA|NA|NA	M	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
PAPOILPD_00960	353496.LBU_0369	9.5e-124	449.5	Lactobacillaceae	gntR1			ko:K03710,ko:K11922					ko00000,ko03000				Bacteria	1UYBW@1239,3FC8N@33958,4IPQD@91061,COG2188@1,COG2188@2	NA|NA|NA	K	UTRA
PAPOILPD_00961	353496.LBU_0368	4.5e-194	683.7	Lactobacillaceae													Bacteria	1U7YW@1239,29NKT@1,30BDR@2,3FAC6@33958,4IHWA@91061	NA|NA|NA		
PAPOILPD_00962	390333.Ldb0447	4.1e-214	750.4	Lactobacillaceae													Bacteria	1U569@1239,29NKT@1,309IS@2,3F4WR@33958,4IEXJ@91061	NA|NA|NA		
PAPOILPD_00963	1293597.BN147_00650	2.4e-255	887.9	Lactobacillaceae	oppA2			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00966	353496.LBU_0364	7.5e-165	586.6	Lactobacillaceae	pfoS			ko:K07035					ko00000				Bacteria	1TS5F@1239,3FCB3@33958,4HC4N@91061,COG3641@1,COG3641@2	NA|NA|NA	S	Phosphotransferase system, EIIC
PAPOILPD_00967	353496.LBU_0363	6.1e-224	783.1	Lactobacillaceae	patA		2.6.1.1,2.6.1.57	ko:K00812,ko:K00832,ko:K00841,ko:K10907	ko00220,ko00250,ko00270,ko00300,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00300,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	M00024,M00025,M00034,M00040,M00525	R00355,R00694,R00734,R00896,R01731,R02433,R02619,R04467,R05052,R07396,R10845	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	1TP0J@1239,3F3MX@33958,4HA13@91061,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase
PAPOILPD_00970	390333.Ldb0438	2.8e-90	337.8	Lactobacillaceae				ko:K06910					ko00000				Bacteria	1VCT7@1239,3FBPJ@33958,4HMCK@91061,COG1881@1,COG1881@2	NA|NA|NA	S	Phosphatidylethanolamine-binding protein
PAPOILPD_00971	353496.LBU_0360	1.1e-70	272.7	Lactobacillaceae													Bacteria	1TSUK@1239,3F3S1@33958,4H9X7@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00972	908339.HMPREF9265_1983	2.7e-47	195.3	Lactobacillaceae													Bacteria	1TRNU@1239,3FCA6@33958,4HCSX@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_00973	390333.Ldb0435	4.8e-119	433.7	Lactobacillaceae	XK27_07525		3.6.1.55	ko:K03574					ko00000,ko01000,ko03400				Bacteria	1U7WX@1239,3F4BS@33958,4HHQT@91061,COG1051@1,COG1051@2	NA|NA|NA	F	NUDIX domain
PAPOILPD_00974	1293597.BN147_03500	4.4e-238	830.5	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_00975	1293597.BN147_00290	7.8e-43	179.5	Lactobacillaceae													Bacteria	1VG2M@1239,2ERDT@1,33IZD@2,3F8CY@33958,4IGIT@91061	NA|NA|NA		
PAPOILPD_00976	1293597.BN147_00290	1.2e-09	67.8	Lactobacillaceae													Bacteria	1VG2M@1239,2ERDT@1,33IZD@2,3F8CY@33958,4IGIT@91061	NA|NA|NA		
PAPOILPD_00977	405566.lhv_1905	1.5e-169	602.1	Lactobacillaceae	mccA	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004122,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016835,GO:0016836,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042127,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0048518,GO:0048522,GO:0050662,GO:0050789,GO:0050794,GO:0065007,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.5.1.134,2.5.1.47	ko:K01738,ko:K17216	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021,M00609	R00897,R03601,R04859,R10305	RC00020,RC00069,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS02385	Bacteria	1TP30@1239,3F4VD@33958,4HAMU@91061,COG0031@1,COG0031@2	NA|NA|NA	E	Belongs to the cysteine synthase cystathionine beta- synthase family
PAPOILPD_00978	326425.lhe_0318	1.2e-219	768.8	Lactobacillaceae	metC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	4.4.1.1,4.4.1.2,4.4.1.8	ko:K01760,ko:K17217	ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017,M00609	R00782,R01001,R01283,R01286,R02408,R04941	RC00056,RC00069,RC00348,RC00382,RC00487,RC00488,RC00710,RC01245,RC02303,RC02814	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPC7@1239,3F3Y2@33958,4HAFQ@91061,COG0626@1,COG0626@2	NA|NA|NA	E	cystathionine
PAPOILPD_00979	326425.lhe_0319	8.1e-94	349.7	Lactobacillaceae	cysE		2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000				Bacteria	1TR42@1239,3F63E@33958,4HAKS@91061,COG1045@1,COG1045@2	NA|NA|NA	E	Bacterial transferase hexapeptide (six repeats)
PAPOILPD_00980	353496.LBU_1140	7.8e-163	579.7	Lactobacillaceae	truB	GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481	5.4.99.25	ko:K03177,ko:K03483					ko00000,ko01000,ko03000,ko03016			iSB619.SA_RS06305	Bacteria	1TP9Y@1239,3F3NX@33958,4HA9X@91061,COG0130@1,COG0130@2	NA|NA|NA	J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PAPOILPD_00981	353496.LBU_1141	5.5e-59	233.4	Lactobacillaceae	rbfA	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043021,GO:0043024,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071840,GO:0090304,GO:1901360		ko:K02834					ko00000,ko03009				Bacteria	1VA0P@1239,3F6WZ@33958,4HII1@91061,COG0858@1,COG0858@2	NA|NA|NA	J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PAPOILPD_00982	353496.LBU_1142	0.0	1375.1	Lactobacillaceae	infB	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464		ko:K02519					ko00000,ko03012,ko03029				Bacteria	1TPAI@1239,3F3JV@33958,4HA8S@91061,COG0532@1,COG0532@2	NA|NA|NA	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PAPOILPD_00983	353496.LBU_1143	1.4e-41	175.3	Lactobacillaceae	rplGA			ko:K07590,ko:K07742	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEYG@1239,3F7ZK@33958,4HNY7@91061,COG1358@1,COG1358@2	NA|NA|NA	J	ribosomal protein
PAPOILPD_00984	353496.LBU_1144	4.3e-43	180.3	Lactobacillaceae	ylxR			ko:K02600,ko:K07742					ko00000,ko03009,ko03021				Bacteria	1VEJS@1239,3F7E2@33958,4HKBY@91061,COG2740@1,COG2740@2	NA|NA|NA	K	Protein of unknown function (DUF448)
PAPOILPD_00985	353496.LBU_1145	6.2e-189	666.8	Lactobacillaceae	nusA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141		ko:K02600,ko:K02945	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03009,ko03011,ko03021				Bacteria	1TPB3@1239,3F3KZ@33958,4HA7F@91061,COG0195@1,COG0195@2	NA|NA|NA	K	Participates in both transcription termination and antitermination
PAPOILPD_00986	390333.Ldb1336	2.1e-82	311.6	Lactobacillaceae	rimP	GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576		ko:K09748					ko00000,ko03009				Bacteria	1V6KT@1239,3F6GZ@33958,4HH88@91061,COG0779@1,COG0779@2	NA|NA|NA	J	Required for maturation of 30S ribosomal subunits
PAPOILPD_00987	353496.LBU_1146	0.0	2899.4	Lactobacillaceae	polC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.7.7.7	ko:K02342,ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TPAG@1239,3F4AN@33958,4H9RF@91061,COG2176@1,COG2176@2	NA|NA|NA	L	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PAPOILPD_00988	353496.LBU_1147	0.0	1108.2	Lactobacillaceae	proS	GO:0002161,GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043906,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iJN678.proS,iUTI89_1310.UTI89_C0210	Bacteria	1TRBV@1239,3F44A@33958,4H9NN@91061,COG0442@1,COG0442@2	NA|NA|NA	J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
PAPOILPD_00989	353496.LBU_1148	3.6e-227	793.9	Lactobacillaceae	rseP	GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0040007,GO:0043170,GO:0043856,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0045152,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141	3.4.21.107,3.4.21.116	ko:K04771,ko:K06399,ko:K11749,ko:K16922	ko01503,ko02020,ko02024,ko04112,map01503,map02020,map02024,map04112	M00728			ko00000,ko00001,ko00002,ko01000,ko01002,ko03110				Bacteria	1TPMC@1239,3F3TM@33958,4HAQ5@91061,COG0750@1,COG0750@2	NA|NA|NA	M	zinc metalloprotease
PAPOILPD_00990	353496.LBU_1149	3e-142	511.1	Lactobacillaceae	cdsA	GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.7.41	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	M00093	R01799	RC00002	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS06255	Bacteria	1TT0Q@1239,3FC0H@33958,4HAMN@91061,COG4589@1,COG4589@2	NA|NA|NA	S	Belongs to the CDS family
PAPOILPD_00991	353496.LBU_1150	2.7e-121	441.4	Lactobacillaceae	uppS	GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617	2.5.1.31	ko:K00806	ko00900,ko01110,map00900,map01110		R06447	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006				Bacteria	1TQTS@1239,3F42M@33958,4HA37@91061,COG0020@1,COG0020@2	NA|NA|NA	H	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PAPOILPD_00992	353496.LBU_1151	4.6e-89	334.0	Lactobacillaceae	frr	GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0030312,GO:0032984,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02838					ko00000,ko03012				Bacteria	1V1F2@1239,3F4X2@33958,4HFSH@91061,COG0233@1,COG0233@2	NA|NA|NA	J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
PAPOILPD_00993	353496.LBU_1152	1.8e-130	471.9	Lactobacillaceae	pyrH	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006225,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009163,GO:0009165,GO:0009185,GO:0009188,GO:0009193,GO:0009194,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042455,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046048,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046872,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.7.4.22	ko:K09903	ko00240,ko01100,map00240,map01100		R00158	RC00002	ko00000,ko00001,ko01000			iSB619.SA_RS06240	Bacteria	1TPXN@1239,3F42J@33958,4H9UB@91061,COG0528@1,COG0528@2	NA|NA|NA	F	Catalyzes the reversible phosphorylation of UMP to UDP
PAPOILPD_00994	353496.LBU_1153	2.9e-182	644.4	Lactobacillaceae	tsf	GO:0001871,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0019538,GO:0019899,GO:0030246,GO:0030247,GO:0034641,GO:0034645,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051020,GO:0065007,GO:0065009,GO:0071704,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065		ko:K02357					ko00000,ko03012,ko03029				Bacteria	1TPFJ@1239,3F459@33958,4HBDV@91061,COG0264@1,COG0264@2	NA|NA|NA	J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PAPOILPD_00995	353496.LBU_1154	3.4e-135	487.6	Lactobacillaceae	rpsB	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02967	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1TPNA@1239,3F3M1@33958,4H9N5@91061,COG0052@1,COG0052@2	NA|NA|NA	J	Belongs to the universal ribosomal protein uS2 family
PAPOILPD_00996	353496.LBU_1155	7.9e-188	662.9	Lactobacillaceae	yabB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464	2.1.1.223	ko:K07461,ko:K15460					ko00000,ko01000,ko03016				Bacteria	1TQ25@1239,3F4C5@33958,4HA8W@91061,COG2827@1,COG2827@2,COG4123@1,COG4123@2	NA|NA|NA	L	Methyltransferase small domain
PAPOILPD_00997	353496.LBU_1156	7.8e-114	416.4	Lactobacillaceae	plsC	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008374,GO:0016020,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0042171,GO:0044464,GO:0071617,GO:0071944	2.3.1.51	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R02241,R09381	RC00004,RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1U8N2@1239,3F4QB@33958,4HDQR@91061,COG0204@1,COG0204@2	NA|NA|NA	I	Acyltransferase
PAPOILPD_00998	353496.LBU_1258	1.3e-18	98.2	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_00999	1293597.BN147_09680	1.2e-254	885.6	Lactobacillaceae													Bacteria	1UHVZ@1239,3F5G1@33958,4ISGG@91061,COG2267@1,COG2267@2	NA|NA|NA	I	Protein of unknown function (DUF2974)
PAPOILPD_01000	353496.LBU_0672	1.3e-105	389.0	Lactobacillaceae	engB	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363		ko:K03978					ko00000,ko03036				Bacteria	1TSPW@1239,3F44G@33958,4HBXZ@91061,COG0218@1,COG0218@2	NA|NA|NA	D	Necessary for normal cell division and for the maintenance of normal septation
PAPOILPD_01001	353496.LBU_0671	9.3e-231	805.8	Lactobacillaceae	clpX	GO:0000166,GO:0000502,GO:0002020,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009376,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019899,GO:0019904,GO:0030163,GO:0030164,GO:0030312,GO:0030554,GO:0031333,GO:0031597,GO:0032271,GO:0032272,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043254,GO:0043335,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051301,GO:0051704,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0097718,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904949,GO:1905368,GO:1905369		ko:K03544	ko04112,map04112				ko00000,ko00001,ko03110				Bacteria	1TQ00@1239,3F41K@33958,4H9U4@91061,COG1219@1,COG1219@2	NA|NA|NA	O	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PAPOILPD_01002	390333.Ldb0777	9.9e-207	726.1	Lactobacillaceae	tig	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464		ko:K03545					ko00000				Bacteria	1TQQ8@1239,3F40B@33958,4H9Q8@91061,COG0544@1,COG0544@2	NA|NA|NA	D	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
PAPOILPD_01003	353496.LBU_0669	1e-223	782.3	Lactobacillaceae	tuf	GO:0001817,GO:0001819,GO:0002791,GO:0002793,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009274,GO:0009275,GO:0009986,GO:0010339,GO:0016020,GO:0022610,GO:0030312,GO:0032677,GO:0032757,GO:0032879,GO:0032880,GO:0035821,GO:0044003,GO:0044068,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044426,GO:0044462,GO:0044464,GO:0044650,GO:0044651,GO:0048518,GO:0048522,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051701,GO:0051704,GO:0051817,GO:0065007,GO:0070201,GO:0071944,GO:0090087,GO:1903530,GO:1903532,GO:1904951,GO:2000482,GO:2000484		ko:K02358,ko:K15771	ko02010,map02010	M00491			ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	3.A.1.1.16,3.A.1.1.2			Bacteria	1TPKC@1239,3F3ZP@33958,4HAEH@91061,COG0050@1,COG0050@2	NA|NA|NA	J	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PAPOILPD_01004	353496.LBU_0668	2.9e-148	531.2	Lactobacillaceae													Bacteria	1TW9B@1239,2CC00@1,30489@2,3F52A@33958,4I50I@91061	NA|NA|NA		
PAPOILPD_01005	390333.Ldb0774	0.0	1120.5	Lactobacillaceae	rnjB	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360		ko:K12574	ko03018,map03018				ko00000,ko00001,ko01000,ko03019				Bacteria	1TQ9G@1239,3F3U9@33958,4HAAP@91061,COG0595@1,COG0595@2	NA|NA|NA	J	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PAPOILPD_01006	353496.LBU_0666	6e-42	176.4	Lactobacillaceae	rpsO	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031123,GO:0031124,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02956	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VA5C@1239,3F7DV@33958,4HKE9@91061,COG0184@1,COG0184@2	NA|NA|NA	J	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PAPOILPD_01007	1293597.BN147_09640	8.1e-33	146.0	Lactobacillaceae	rpsT	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030234,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0042979,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0065003,GO:0065007,GO:0065009,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02968	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEGX@1239,3F7D8@33958,4HNJS@91061,COG0268@1,COG0268@2	NA|NA|NA	J	Binds directly to 16S ribosomal RNA
PAPOILPD_01008	353496.LBU_0664	1.9e-178	631.7	Lactobacillaceae	holA		2.7.7.7	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TRM0@1239,3F3TP@33958,4HBB4@91061,COG1466@1,COG1466@2	NA|NA|NA	L	DNA polymerase III delta subunit
PAPOILPD_01009	353496.LBU_0663	0.0	1394.8	Lactobacillaceae	comEC			ko:K02238		M00429			ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2			Bacteria	1TS9U@1239,3F3VT@33958,4H9M4@91061,COG0658@1,COG0658@2,COG2333@1,COG2333@2	NA|NA|NA	S	Competence protein ComEC
PAPOILPD_01010	353496.LBU_0662	1.1e-61	243.4	Lactobacillaceae	comEA			ko:K02237		M00429			ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2			Bacteria	1VA3W@1239,3F7NP@33958,4HKJ1@91061,COG1555@1,COG1555@2	NA|NA|NA	L	Competence protein ComEA
PAPOILPD_01011	390333.Ldb0768	2.1e-188	664.8	Lactobacillaceae	ylbL			ko:K07177	ko02024,map02024				ko00000,ko00001,ko01002				Bacteria	1TRUF@1239,3F4KY@33958,4HBAY@91061,COG3480@1,COG3480@2	NA|NA|NA	T	Belongs to the peptidase S16 family
PAPOILPD_01012	353496.LBU_0660	5.7e-83	313.5	Lactobacillaceae	coaD	GO:0003674,GO:0003824,GO:0004595,GO:0005488,GO:0005515,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0015939,GO:0015940,GO:0016043,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034214,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046390,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0055086,GO:0065003,GO:0070566,GO:0071704,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.7.3	ko:K00954	ko00770,ko01100,map00770,map01100	M00120	R03035	RC00002	ko00000,ko00001,ko00002,ko01000			iPC815.YPO0053,iSDY_1059.SDY_4064	Bacteria	1V3MR@1239,3FCD3@33958,4HH47@91061,COG0669@1,COG0669@2	NA|NA|NA	H	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PAPOILPD_01013	353496.LBU_0659	1.3e-96	359.0	Lactobacillaceae	rsmD		2.1.1.171	ko:K08316			R07234	RC00003	ko00000,ko01000,ko03009				Bacteria	1V3JF@1239,3F505@33958,4HGXT@91061,COG0742@1,COG0742@2	NA|NA|NA	L	RNA methyltransferase, RsmD family
PAPOILPD_01014	353496.LBU_0658	5.6e-53	213.4	Bacilli	ylbG												Bacteria	1VF52@1239,4HNTH@91061,COG4471@1,COG4471@2	NA|NA|NA	S	UPF0298 protein
PAPOILPD_01015	353496.LBU_0657	4.8e-208	730.3	Lactobacillaceae	ftsW			ko:K03588	ko04112,map04112				ko00000,ko00001,ko02000,ko03036	2.A.103.1			Bacteria	1TPT7@1239,3F4IK@33958,4HAEV@91061,COG0772@1,COG0772@2	NA|NA|NA	D	Belongs to the SEDS family
PAPOILPD_01016	390333.Ldb0763	0.0	1201.4	Lactobacillaceae	typA	GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840		ko:K06207					ko00000				Bacteria	1TQ5Y@1239,3F3UK@33958,4HAQ6@91061,COG1217@1,COG1217@2	NA|NA|NA	T	GTP-binding protein TypA
PAPOILPD_01017	390333.Ldb0762	1.1e-101	375.9	Lactobacillaceae	def	GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564	3.5.1.31,3.5.1.88	ko:K01450,ko:K01462	ko00270,ko00630,map00270,map00630		R00653	RC00165,RC00323	ko00000,ko00001,ko01000				Bacteria	1V70B@1239,3F3YH@33958,4HH0G@91061,COG0242@1,COG0242@2	NA|NA|NA	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
PAPOILPD_01018	353496.LBU_0654	3.6e-35	153.7	Lactobacillaceae	ykzG												Bacteria	1VEI7@1239,3F807@33958,4HNSK@91061,COG5503@1,COG5503@2	NA|NA|NA	S	Belongs to the UPF0356 family
PAPOILPD_01019	390333.Ldb0760	0.0	1094.7	Lactobacillaceae	rnjA	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004527,GO:0004532,GO:0004534,GO:0004540,GO:0005488,GO:0005515,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008409,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042802,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090503,GO:0140098,GO:1901360		ko:K12574	ko03018,map03018				ko00000,ko00001,ko01000,ko03019				Bacteria	1TQ9G@1239,3F3TT@33958,4HAAP@91061,COG0595@1,COG0595@2	NA|NA|NA	J	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PAPOILPD_01020	353496.LBU_0688	1.4e-09	67.4	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01021	353496.LBU_1022	4.3e-132	477.2	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01022	1293597.BN147_02060	3.6e-219	767.3	Lactobacillaceae	argG	GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	6.3.4.5	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	M00029,M00844,M00845	R01954	RC00380,RC00629	ko00000,ko00001,ko00002,ko01000,ko04147			iJN678.argG,iSB619.SA_RS04675	Bacteria	1TP3X@1239,3F46X@33958,4HA1E@91061,COG0137@1,COG0137@2	NA|NA|NA	E	Belongs to the argininosuccinate synthase family. Type 1 subfamily
PAPOILPD_01023	1293597.BN147_02055	4.5e-218	763.8	Lactobacillaceae	argH	GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.1,4.3.2.1	ko:K01755,ko:K14681	ko00220,ko00250,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map01100,map01110,map01130,map01210,map01230	M00028,M00029,M00844,M00845	R00259,R01086	RC00004,RC00064,RC00445,RC00447	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1TNZ6@1239,3F4PF@33958,4HB24@91061,COG0165@1,COG0165@2	NA|NA|NA	E	argininosuccinate lyase
PAPOILPD_01025	1293597.BN147_08775	1.9e-17	94.7	Lactobacillaceae													Bacteria	1U72P@1239,2DKU1@1,30AT4@2,3F8WC@33958,4IGX8@91061	NA|NA|NA		
PAPOILPD_01027	1499684.CCNP01000023_gene3447	2.9e-14	85.1	Clostridiaceae			1.3.5.4,1.3.99.33	ko:K00244,ko:K17363	ko00020,ko00190,ko00340,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00340,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	M00009,M00011,M00150,M00173	R02164,R10330	RC00045,RC00669	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPAR@1239,247SY@186801,36DR3@31979,COG1053@1,COG1053@2,COG3976@1,COG3976@2	NA|NA|NA	C	PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein
PAPOILPD_01028	1410612.JNKO01000001_gene2595	1.9e-171	609.0	Clostridia													Bacteria	1TT1Q@1239,249N4@186801,COG1053@1,COG1053@2,COG3976@1,COG3976@2	NA|NA|NA	C	PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein
PAPOILPD_01029	390333.Ldb0876	6.8e-110	403.3	Lactobacillaceae			2.7.6.5	ko:K00951,ko:K07816	ko00230,map00230		R00429	RC00002,RC00078	ko00000,ko00001,ko01000				Bacteria	1TQ2F@1239,3F518@33958,4IQWD@91061,COG2357@1,COG2357@2	NA|NA|NA	T	Region found in RelA / SpoT proteins
PAPOILPD_01030	390333.Ldb0877	9.7e-118	429.5	Lactobacillaceae													Bacteria	1TPU2@1239,3F53G@33958,4HG2E@91061,COG0745@1,COG0745@2	NA|NA|NA	K	response regulator
PAPOILPD_01031	353496.LBU_0743	1.6e-222	778.5	Lactobacillaceae	sptS		2.7.13.3	ko:K11328	ko02020,map02020	M00464			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1UHQH@1239,3F4JY@33958,4HAHG@91061,COG0642@1,COG0642@2	NA|NA|NA	T	Histidine kinase
PAPOILPD_01032	334390.LAF_1215	6.9e-206	724.2	Lactobacillaceae	cas3			ko:K07012,ko:K19123					ko00000,ko01000,ko02048				Bacteria	1TQ9B@1239,3F5AQ@33958,4HC62@91061,COG1203@1,COG1203@2	NA|NA|NA	L	Type III restriction enzyme, res subunit
PAPOILPD_01033	334390.LAF_1213	5.9e-100	370.5	Lactobacillaceae	cas5d			ko:K19119					ko00000,ko02048				Bacteria	1TPSR@1239,2DBAF@1,2Z82V@2,3F5SY@33958,4HCZQ@91061	NA|NA|NA	S	CRISPR-associated protein (Cas_Cas5)
PAPOILPD_01034	334390.LAF_1212	3.4e-136	492.3	Lactobacillaceae	csd1		3.5.1.28	ko:K01447,ko:K17733,ko:K19117			R04112	RC00064,RC00141	ko00000,ko01000,ko01002,ko01011,ko02048				Bacteria	1TR9V@1239,3F5CZ@33958,4HDQB@91061,COG5632@1,COG5632@2	NA|NA|NA	M	CRISPR-associated protein (Cas_Csd1)
PAPOILPD_01035	334390.LAF_1211	1.6e-104	386.0	Lactobacillaceae	csd2			ko:K19115,ko:K19118					ko00000,ko02048				Bacteria	1TQZ8@1239,3F5S4@33958,4H9KH@91061,COG3649@1,COG3649@2	NA|NA|NA	L	CRISPR-associated protein Cas7
PAPOILPD_01036	405566.lhv_1619	4e-92	344.4	Lactobacillaceae	cas4		3.1.12.1	ko:K07464,ko:K15342					ko00000,ko01000,ko02048,ko03400				Bacteria	1TT4D@1239,3F64R@33958,4HEH3@91061,COG1468@1,COG1468@2	NA|NA|NA	L	Domain of unknown function DUF83
PAPOILPD_01037	405566.lhv_1618	6.2e-148	530.4	Lactobacillaceae	cas1			ko:K15342					ko00000,ko02048,ko03400				Bacteria	1TQWG@1239,3F5RS@33958,4H9SJ@91061,COG1518@1,COG1518@2	NA|NA|NA	L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAPOILPD_01038	334390.LAF_1208	2.8e-29	134.4	Lactobacillaceae	cas2	GO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360		ko:K09951					ko00000,ko02048				Bacteria	1VAV3@1239,3F8MC@33958,4HP0S@91061,COG1343@1,COG1343@2	NA|NA|NA	L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAPOILPD_01039	353496.LBU_0748	1.5e-195	688.7	Lactobacillaceae	atoB		1.1.1.88,2.3.1.9	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177,R02081	RC00004,RC00326,RC00644	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1TP07@1239,3F3Q5@33958,4H9RJ@91061,COG0183@1,COG0183@2	NA|NA|NA	I	Belongs to the thiolase family
PAPOILPD_01040	353496.LBU_0749	6.6e-213	746.5	Lactobacillaceae	mvaA		1.1.1.34,1.1.1.88,2.3.1.9	ko:K00021,ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,ko04152,ko04976,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020,map04152,map04976	M00088,M00095,M00373,M00374,M00375	R00238,R01177,R02081,R02082	RC00004,RC00326,RC00644	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1TPNY@1239,3F3YY@33958,4HBQ3@91061,COG1257@1,COG1257@2	NA|NA|NA	C	Belongs to the HMG-CoA reductase family
PAPOILPD_01041	390333.Ldb0881	4.8e-221	773.5	Lactobacillaceae	mvaS		2.3.3.10	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	M00088,M00095	R01978	RC00004,RC00503	ko00000,ko00001,ko00002,ko01000				Bacteria	1TR4K@1239,3F425@33958,4HA67@91061,COG3425@1,COG3425@2	NA|NA|NA	I	Hydroxymethylglutaryl-CoA synthase
PAPOILPD_01043	353496.LBU_0772	3.5e-112	411.0	Lactobacillaceae	birA		6.3.4.15	ko:K03524	ko00780,ko01100,map00780,map01100		R01074,R05145	RC00043,RC00070,RC00096,RC02896	ko00000,ko00001,ko01000,ko03000				Bacteria	1TQCU@1239,3F5HY@33958,4HB60@91061,COG0340@1,COG0340@2	NA|NA|NA	H	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
PAPOILPD_01044	353496.LBU_0771	7.5e-124	449.9	Lactobacillaceae	fabI	GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576	1.3.1.10,1.3.1.9	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	M00083,M00572	R01404,R04429,R04430,R04724,R04725,R04955,R04956,R04958,R04959,R04961,R04962,R04966,R04967,R04969,R04970,R07765,R10118,R10122,R11671	RC00052,RC00076,RC00120	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1TPVD@1239,3F4AQ@33958,4H9YN@91061,COG0623@1,COG0623@2	NA|NA|NA	I	Enoyl- acyl-carrier-protein reductase NADH
PAPOILPD_01045	353496.LBU_0770	1.8e-136	491.9	Lactobacillaceae	accA		2.1.3.15,6.4.1.2	ko:K01962,ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000				Bacteria	1UHNS@1239,3F496@33958,4HA4C@91061,COG0825@1,COG0825@2	NA|NA|NA	I	alpha subunit
PAPOILPD_01046	353496.LBU_0769	3.2e-158	564.3	Lactobacillaceae	accD		2.1.3.15,6.4.1.2	ko:K01962,ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP4U@1239,3F3T6@33958,4HAI7@91061,COG0777@1,COG0777@2	NA|NA|NA	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PAPOILPD_01047	353496.LBU_0768	5.8e-258	896.3	Lactobacillaceae	accC	GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000			iSF_1195.SF3294	Bacteria	1TP16@1239,3F3PT@33958,4HARK@91061,COG0439@1,COG0439@2	NA|NA|NA	I	Acetyl-CoA carboxylase biotin carboxylase subunit
PAPOILPD_01048	353496.LBU_0767	1.9e-77	295.0	Lactobacillaceae	fabZ		3.5.1.108,4.2.1.59	ko:K02372,ko:K16363	ko00061,ko00540,ko00780,ko01100,ko01212,map00061,map00540,map00780,map01100,map01212	M00060,M00083,M00572	R04428,R04535,R04537,R04544,R04568,R04587,R04954,R04965,R07764,R10117,R10121	RC00166,RC00300,RC00831,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004,ko01005				Bacteria	1V6EX@1239,3F5EE@33958,4HGX1@91061,COG0764@1,COG0764@2	NA|NA|NA	I	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
PAPOILPD_01049	353496.LBU_0766	1.1e-67	262.7	Lactobacillaceae	accB		2.3.1.12,4.1.1.3	ko:K00627,ko:K01571,ko:K02160	ko00010,ko00020,ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00010,map00020,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00307,M00376	R00209,R00217,R00742,R02569	RC00004,RC00040,RC00367,RC02742,RC02857	br01601,ko00000,ko00001,ko00002,ko01000,ko02000	3.B.1.1.1			Bacteria	1VAB7@1239,3F7M1@33958,4HKCS@91061,COG0511@1,COG0511@2	NA|NA|NA	I	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
PAPOILPD_01050	353496.LBU_0765	2.6e-222	777.7	Lactobacillaceae	fabF		2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1TPA7@1239,3F51H@33958,4H9SD@91061,COG0304@1,COG0304@2	NA|NA|NA	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
PAPOILPD_01051	353496.LBU_0764	1.4e-122	445.7	Lactobacillaceae													Bacteria	1TP76@1239,3F4RI@33958,4HAA6@91061,COG1028@1,COG1028@2	NA|NA|NA	IQ	reductase
PAPOILPD_01052	353496.LBU_0763	2.2e-176	624.8	Lactobacillaceae	fabD		2.3.1.39	ko:K00645	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	M00082	R01626,R11671	RC00004,RC00039,RC02727	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1TPB7@1239,3F3W9@33958,4HBCU@91061,COG0331@1,COG0331@2	NA|NA|NA	I	Malonyl CoA-acyl carrier protein transacylase
PAPOILPD_01053	353496.LBU_0762	3e-32	144.1	Lactobacillaceae	acpP	GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509		ko:K02078					ko00000,ko00001				Bacteria	1VGIY@1239,3F7ZJ@33958,4HP0V@91061,COG0236@1,COG0236@2	NA|NA|NA	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PAPOILPD_01054	353496.LBU_0761	2.8e-171	607.8	Lactobacillaceae	fabH		2.3.1.180	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00082,M00083	R10707	RC00004,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1TP0K@1239,3F3XP@33958,4HATK@91061,COG0332@1,COG0332@2	NA|NA|NA	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PAPOILPD_01055	390333.Ldb0899	1.9e-179	635.2	Lactobacillaceae													Bacteria	1TSBK@1239,3F46E@33958,4HBYJ@91061,COG0628@1,COG0628@2	NA|NA|NA	K	AI-2E family transporter
PAPOILPD_01056	353496.LBU_0759	1.1e-304	1052.0	Lactobacillaceae													Bacteria	1TS3Q@1239,3F4AT@33958,4HF7D@91061,COG4907@1,COG4907@2	NA|NA|NA	S	Predicted membrane protein (DUF2207)
PAPOILPD_01057	353496.LBU_0758	1.1e-07	63.5	Lactobacillaceae													Bacteria	1U7QM@1239,29Q9C@1,30B8G@2,3FA0W@33958,4IHMY@91061	NA|NA|NA		
PAPOILPD_01058	353496.LBU_0757	0.0	1236.9	Lactobacillaceae	aspS		6.1.1.12	ko:K01876	ko00970,map00970	M00359,M00360	R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029				Bacteria	1TPCN@1239,3F4PE@33958,4HACD@91061,COG0173@1,COG0173@2	NA|NA|NA	J	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
PAPOILPD_01059	353496.LBU_0756	9.8e-244	849.0	Lactobacillaceae	hisS		6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TP3D@1239,3F3M3@33958,4HAM2@91061,COG0124@1,COG0124@2	NA|NA|NA	J	histidyl-tRNA synthetase
PAPOILPD_01060	353496.LBU_0755	2.5e-74	284.6	Lactobacillaceae	dtd	GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106026,GO:0106074,GO:0140098,GO:0140101,GO:1901360		ko:K07560					ko00000,ko01000,ko03016				Bacteria	1V6GH@1239,3F6GK@33958,4HINN@91061,COG1490@1,COG1490@2	NA|NA|NA	J	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
PAPOILPD_01061	390333.Ldb0885	0.0	1392.1	Lactobacillaceae	relA	GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657	2.7.6.5	ko:K00951	ko00230,map00230		R00429	RC00002,RC00078	ko00000,ko00001,ko01000			iHN637.CLJU_RS16615,iYO844.BSU27600	Bacteria	1TNYZ@1239,3F44F@33958,4HBX7@91061,COG0317@1,COG0317@2	NA|NA|NA	KT	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PAPOILPD_01062	353496.LBU_0753	8.7e-173	612.8	Lactobacillaceae	prmA			ko:K02687					ko00000,ko01000,ko03009				Bacteria	1TPKI@1239,3F47Z@33958,4HAMF@91061,COG2264@1,COG2264@2	NA|NA|NA	J	Ribosomal protein L11 methyltransferase
PAPOILPD_01063	353496.LBU_0752	1.2e-88	332.4	Lactobacillaceae	ybaK			ko:K03976					ko00000,ko01000,ko03016				Bacteria	1V6JF@1239,3F5H1@33958,4HHVB@91061,COG2606@1,COG2606@2	NA|NA|NA	S	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PAPOILPD_01064	353496.LBU_0751	3.1e-211	741.1	Lactobacillaceae	yjjP												Bacteria	1TNZH@1239,3F4FR@33958,4HU4D@91061,COG2966@1,COG2966@2,COG3610@1,COG3610@2	NA|NA|NA	S	Putative threonine/serine exporter
PAPOILPD_01066	511437.Lbuc_1538	3.7e-74	286.6	Lactobacillaceae				ko:K06919					ko00000				Bacteria	1TQP9@1239,3F3UD@33958,4HBTB@91061,COG3378@1,COG3378@2,COG4983@1,COG4983@2	NA|NA|NA	S	Phage plasmid primase, P4
PAPOILPD_01067	1074451.CRL705_1934	4.1e-83	313.9	Lactobacillaceae	dps			ko:K04047					ko00000,ko03036				Bacteria	1VCVJ@1239,3F5WI@33958,4HMBD@91061,COG0783@1,COG0783@2	NA|NA|NA	P	Belongs to the Dps family
PAPOILPD_01069	1033837.WANG_p1073	1.2e-43	183.3	Lactobacillaceae	xerC			ko:K03733,ko:K04763					ko00000,ko03036				Bacteria	1V98H@1239,3F5YH@33958,4HM0P@91061,COG4974@1,COG4974@2	NA|NA|NA	L	Phage integrase, N-terminal SAM-like domain
PAPOILPD_01070	1423743.JCM14108_3045	3.6e-48	198.4	Lactobacillaceae				ko:K03496					ko00000,ko03036,ko04812				Bacteria	1TP8S@1239,3F9XU@33958,4HAYM@91061,COG1192@1,COG1192@2	NA|NA|NA	D	Cellulose biosynthesis protein BcsQ
PAPOILPD_01072	1423816.BACQ01000052_gene1977	2.8e-257	894.0	Lactobacillaceae	gor		1.8.1.7	ko:K00383	ko00480,ko04918,map00480,map04918		R00094,R00115	RC00011	ko00000,ko00001,ko01000				Bacteria	1TS0Z@1239,3F3K2@33958,4HBYB@91061,COG1249@1,COG1249@2	NA|NA|NA	C	Glutathione reductase
PAPOILPD_01073	353496.LBU_0045	1.6e-85	322.0	Lactobacillaceae	racA			ko:K11686,ko:K13640,ko:K18997					ko00000,ko03000,ko03036				Bacteria	1V7Z4@1239,3F6W4@33958,4HPH8@91061,COG0789@1,COG0789@2	NA|NA|NA	K	Domain of unknown function (DUF1836)
PAPOILPD_01074	353496.LBU_0046	1.4e-142	512.3	Lactobacillaceae	yitS												Bacteria	1TSKD@1239,3FBEP@33958,4HC4E@91061,COG1307@1,COG1307@2	NA|NA|NA	S	EDD domain protein, DegV family
PAPOILPD_01075	353496.LBU_0048	1.7e-100	372.1	Lactobacillaceae			3.1.1.5	ko:K10804	ko01040,map01040				ko00000,ko00001,ko01000,ko01004				Bacteria	1VAT2@1239,3F5TI@33958,4HKYJ@91061,COG2755@1,COG2755@2	NA|NA|NA	E	GDSL-like Lipase/Acylhydrolase
PAPOILPD_01076	353496.LBU_0049	7.5e-123	446.4	Lactobacillaceae	gpmB												Bacteria	1VDCB@1239,3F50R@33958,4HD4C@91061,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
PAPOILPD_01077	1293597.BN147_02360	3.2e-123	448.0	Lactobacillaceae													Bacteria	1U7DU@1239,29Q32@1,30B1P@2,3F9FT@33958,4IH9R@91061	NA|NA|NA		
PAPOILPD_01078	1293597.BN147_09915	1.6e-16	92.8	Lactobacillaceae													Bacteria	1U85T@1239,2A094@1,30NCE@2,3FAK0@33958,4II3B@91061	NA|NA|NA		
PAPOILPD_01079	353496.LBU_0051	5.8e-08	62.0	Bacteria				ko:K03523	ko02010,map02010	M00581,M00582			ko00000,ko00001,ko00002,ko02000	2.A.88.1,2.A.88.2			Bacteria	COG1268@1,COG1268@2	NA|NA|NA	S	biotin transmembrane transporter activity
PAPOILPD_01080	353496.LBU_0054	8.4e-136	489.6	Lactobacillaceae	yjjG	GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006206,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0008655,GO:0009058,GO:0009112,GO:0009410,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019856,GO:0019859,GO:0030145,GO:0034641,GO:0034654,GO:0042221,GO:0042578,GO:0043094,GO:0043100,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046112,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	3.1.3.102,3.1.3.104,3.1.3.5,3.8.1.2	ko:K01560,ko:K07025,ko:K08723,ko:K20862	ko00230,ko00240,ko00361,ko00625,ko00740,ko00760,ko01100,ko01110,ko01120,map00230,map00240,map00361,map00625,map00740,map00760,map01100,map01110,map01120	M00125	R00183,R00511,R00548,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346,R05287,R07280	RC00017,RC00697	ko00000,ko00001,ko00002,ko01000			iECNA114_1301.ECNA114_4614	Bacteria	1TS3W@1239,3F4NI@33958,4HADE@91061,COG1011@1,COG1011@2	NA|NA|NA	S	Haloacid dehalogenase-like hydrolase
PAPOILPD_01082	353496.LBU_0057	1.5e-160	572.0	Lactobacillaceae	xth	GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360	3.1.11.2	ko:K01142	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPFB@1239,3F4GK@33958,4HAIU@91061,COG0708@1,COG0708@2	NA|NA|NA	L	exodeoxyribonuclease III
PAPOILPD_01083	390333.Ldb0093	3.1e-74	284.6	Lactobacillaceae													Bacteria	1U8BX@1239,29QN0@1,30BMM@2,3FATE@33958,4II9W@91061	NA|NA|NA		
PAPOILPD_01084	353496.LBU_0059	4.2e-172	610.5	Lactobacillaceae	ldh		1.1.1.27	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922		R00703,R01000,R03104	RC00031,RC00044	ko00000,ko00001,ko01000,ko04147				Bacteria	1UXY2@1239,3F4M2@33958,4HD1S@91061,COG0039@1,COG0039@2	NA|NA|NA	C	Belongs to the LDH MDH superfamily
PAPOILPD_01085	390333.Ldb0095	3.7e-162	577.4	Lactobacillaceae	yvgN												Bacteria	1TPM1@1239,3F3PW@33958,4HARE@91061,COG0656@1,COG0656@2	NA|NA|NA	C	Aldo keto reductase
PAPOILPD_01086	390333.Ldb0601	7.6e-214	749.6	Lactobacillaceae	tagO	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0030145,GO:0034645,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0045229,GO:0046872,GO:0046914,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:1901576	2.7.8.33,2.7.8.35	ko:K02851			R08856	RC00002	ko00000,ko01000,ko01003,ko01005				Bacteria	1TP9V@1239,3F4JV@33958,4H9KT@91061,COG0472@1,COG0472@2	NA|NA|NA	M	transferase
PAPOILPD_01087	353496.LBU_0504	1.7e-211	742.3	Lactobacillaceae	rny	GO:0003674,GO:0005488,GO:0005515,GO:0042802		ko:K18682	ko03018,map03018				ko00000,ko00001,ko01000,ko03019				Bacteria	1TP48@1239,3F3WX@33958,4HC9J@91061,COG1418@1,COG1418@2	NA|NA|NA	S	Endoribonuclease that initiates mRNA decay
PAPOILPD_01088	353496.LBU_0503	1.1e-195	689.1	Lactobacillaceae	recA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009292,GO:0009294,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030420,GO:0031668,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0046483,GO:0050896,GO:0051704,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:1901360		ko:K03553	ko03440,map03440	M00729			ko00000,ko00001,ko00002,ko03400				Bacteria	1TPD5@1239,3F3KU@33958,4HAG5@91061,COG0468@1,COG0468@2	NA|NA|NA	L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PAPOILPD_01089	353496.LBU_0502	2.7e-97	361.3	Lactobacillaceae	pgsA	GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576	2.7.8.41,2.7.8.5	ko:K00995,ko:K08744	ko00564,ko01100,map00564,map01100		R01801,R02030	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000			iSB619.SA_RS06365	Bacteria	1V6PJ@1239,3F4BI@33958,4HCEX@91061,COG0558@1,COG0558@2	NA|NA|NA	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PAPOILPD_01090	390333.Ldb0597	1e-98	367.1	Lactobacillaceae	ymfM			ko:K15539					ko00000				Bacteria	1V1N7@1239,3F3SM@33958,4HKW3@91061,COG1426@1,COG1426@2	NA|NA|NA	S	Helix-turn-helix domain
PAPOILPD_01091	390333.Ldb0596	3.7e-131	474.2	Lactobacillaceae													Bacteria	1V0YW@1239,3FBEA@33958,4ISGK@91061,COG1028@1,COG1028@2	NA|NA|NA	IQ	Enoyl-(Acyl carrier protein) reductase
PAPOILPD_01092	353496.LBU_0498	5.5e-231	806.6	Lactobacillaceae													Bacteria	1TP5I@1239,3F4MU@33958,4H9YG@91061,COG0612@1,COG0612@2	NA|NA|NA	S	Peptidase M16
PAPOILPD_01093	353496.LBU_0497	1.1e-228	798.9	Lactobacillaceae			2.7.1.26,2.7.7.2	ko:K07263,ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000,ko01002				Bacteria	1TPN6@1239,3F3SA@33958,4H9P5@91061,COG0612@1,COG0612@2	NA|NA|NA	S	Peptidase M16 inactive domain protein
PAPOILPD_01094	390333.Ldb0593	0.0	1343.9	Lactobacillaceae	ftsK	GO:0000003,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019954,GO:0030436,GO:0031323,GO:0031326,GO:0032502,GO:0043934,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141		ko:K03466					ko00000,ko03036	3.A.12			Bacteria	1TPJR@1239,3F3JZ@33958,4H9WA@91061,COG1674@1,COG1674@2	NA|NA|NA	D	Belongs to the FtsK SpoIIIE SftA family
PAPOILPD_01095	353496.LBU_0495	1.9e-68	265.0	Lactobacillaceae	WQ51_03320												Bacteria	1VJ7H@1239,3F6JB@33958,4HP0P@91061,COG4835@1,COG4835@2	NA|NA|NA	S	Protein of unknown function (DUF1149)
PAPOILPD_01096	353496.LBU_0494	8.1e-102	376.3	Lactobacillaceae	trmL	GO:0001510,GO:0002128,GO:0002130,GO:0002131,GO:0002132,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016427,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052665,GO:0052666,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.207	ko:K03216					ko00000,ko01000,ko03016				Bacteria	1V3GW@1239,3F42Y@33958,4HFNY@91061,COG0219@1,COG0219@2	NA|NA|NA	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
PAPOILPD_01097	353496.LBU_0493	6e-179	633.6	Lactobacillaceae	yubA												Bacteria	1TQ84@1239,3F418@33958,4H9SR@91061,COG0628@1,COG0628@2	NA|NA|NA	S	AI-2E family transporter
PAPOILPD_01098	353496.LBU_0492	1.7e-63	248.4	Lactobacillaceae	srlB		2.7.1.198	ko:K02781	ko00051,ko02060,map00051,map02060	M00280	R05820	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.4.1			Bacteria	1VGKB@1239,3F8EZ@33958,4HNJN@91061,COG3731@1,COG3731@2	NA|NA|NA	G	PTS system glucitol/sorbitol-specific IIA component
PAPOILPD_01099	390333.Ldb0588	2.1e-196	691.4	Lactobacillaceae	pgl	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016787,GO:0016788,GO:0017057,GO:0044424,GO:0044444,GO:0044464,GO:0052689	3.1.1.31	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R02035	RC00537	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQ3J@1239,3F3RC@33958,4HBHB@91061,COG2706@1,COG2706@2	NA|NA|NA	G	Lactonase, 7-bladed beta-propeller
PAPOILPD_01100	353496.LBU_0490	5.2e-145	520.4	Lactobacillaceae	uppP	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031224,GO:0031226,GO:0042221,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050380,GO:0050896,GO:0071944	3.6.1.27	ko:K06153	ko00550,map00550		R05627	RC00002	ko00000,ko00001,ko01000,ko01011			iYL1228.KPN_03461	Bacteria	1TPFA@1239,3F510@33958,4HB0M@91061,COG1968@1,COG1968@2	NA|NA|NA	V	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
PAPOILPD_01101	353496.LBU_0489	2.8e-22	110.5	Lactobacillaceae													Bacteria	1U71G@1239,29PU1@1,30AS7@2,3F8UX@33958,4IGVY@91061	NA|NA|NA		
PAPOILPD_01102	353496.LBU_0488	2.1e-171	608.2	Lactobacillaceae	rluD		5.4.99.23	ko:K06180					ko00000,ko01000,ko03009				Bacteria	1TS1T@1239,3F46Z@33958,4HBRY@91061,COG0564@1,COG0564@2	NA|NA|NA	J	Responsible for synthesis of pseudouridine from uracil
PAPOILPD_01103	390333.Ldb0585	7.4e-149	533.1	Lactobacillaceae	nadK	GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008976,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	2.7.1.23	ko:K00858	ko00760,ko01100,map00760,map01100		R00104	RC00002,RC00078	ko00000,ko00001,ko01000			iEcSMS35_1347.EcSMS35_2767,iHN637.CLJU_RS05480,iLJ478.TM1733,iSB619.SA_RS04895	Bacteria	1TRB3@1239,3F45D@33958,4HB08@91061,COG0061@1,COG0061@2	NA|NA|NA	F	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PAPOILPD_01104	390333.Ldb0584	2.6e-112	411.4	Lactobacillaceae	yjbM		2.7.6.5	ko:K07816	ko00230,map00230		R00429	RC00002,RC00078	ko00000,ko00001,ko01000				Bacteria	1TQ2F@1239,3F452@33958,4HA3Q@91061,COG2357@1,COG2357@2	NA|NA|NA	S	RelA SpoT domain protein
PAPOILPD_01105	353496.LBU_0485	3.3e-109	401.0	Lactobacillaceae	yjbK												Bacteria	1TTVM@1239,3F4YS@33958,4I4A3@91061,COG4116@1,COG4116@2	NA|NA|NA	S	CYTH
PAPOILPD_01106	390333.Ldb0582	2e-107	395.2	Lactobacillaceae	yjbH	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944											Bacteria	1TQ8K@1239,3F6QR@33958,4HAI8@91061,COG2761@1,COG2761@2	NA|NA|NA	Q	Thioredoxin
PAPOILPD_01107	353496.LBU_0483	2.5e-118	431.4	Lactobacillaceae	coiA		3.6.4.12	ko:K03657,ko:K06198	ko03420,ko03430,map03420,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	1TRGD@1239,3F4BZ@33958,4HFP5@91061,COG4469@1,COG4469@2	NA|NA|NA	S	Competence protein
PAPOILPD_01108	518637.EUBIFOR_00499	5e-59	235.3	Erysipelotrichia	yeaJ	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0032879,GO:0040012,GO:0040013,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051270,GO:0051271,GO:0065007,GO:0071944,GO:1902021,GO:1902201,GO:2000145,GO:2000146	2.7.7.65	ko:K18968	ko02026,map02026				ko00000,ko00001,ko01000,ko02000	9.B.34.1.2			Bacteria	1TRCK@1239,3VT99@526524,COG2199@1,COG2199@2,COG3452@1,COG3452@2	NA|NA|NA	T	Diguanylate cyclase (GGDEF) domain protein
PAPOILPD_01109	1293597.BN147_10150	1.8e-54	218.8	Lactobacillaceae	yeaJ	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0032879,GO:0040012,GO:0040013,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051270,GO:0051271,GO:0065007,GO:0071944,GO:1902021,GO:1902201,GO:2000145,GO:2000146	2.7.7.65	ko:K18968	ko02026,map02026				ko00000,ko00001,ko01000,ko02000	9.B.34.1.2			Bacteria	1UMND@1239,3FBZW@33958,4IV43@91061,COG2199@1,COG2199@2	NA|NA|NA	T	diguanylate cyclase
PAPOILPD_01112	353496.LBU_0106	5.6e-51	206.8	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01113	353496.LBU_1608	1.6e-25	121.3	Lactobacillaceae													Bacteria	1U7XX@1239,29QDV@1,30BD5@2,3FAB2@33958,4IHVA@91061	NA|NA|NA		
PAPOILPD_01114	1423806.JCM15457_1500	2.8e-178	632.1	Lactobacillaceae	treB			ko:K02755,ko:K02756,ko:K02757,ko:K02777	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	M00265,M00266,M00268,M00270,M00271,M00272,M00303,M00806	R02738,R02780,R04111,R04394,R05132,R08559	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.1.1.1,4.A.1.2.11,4.A.1.2.2,4.A.1.2.5,4.A.1.2.6			Bacteria	1TP5X@1239,3F458@33958,4HA0I@91061,COG1263@1,COG1263@2,COG1264@1,COG1264@2,COG2190@1,COG2190@2	NA|NA|NA	G	phosphotransferase system
PAPOILPD_01115	1423806.JCM15457_1499	3e-61	241.9	Lactobacillaceae	treR			ko:K03486,ko:K03710					ko00000,ko03000				Bacteria	1TRF6@1239,3F62J@33958,4HDCX@91061,COG2188@1,COG2188@2	NA|NA|NA	K	UTRA
PAPOILPD_01116	1423754.BALY01000018_gene358	8.2e-251	872.8	Lactobacillaceae	treC	GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005991,GO:0005993,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008788,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0015927,GO:0016052,GO:0016787,GO:0016798,GO:0033554,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0046352,GO:0050896,GO:0051716,GO:0071704,GO:1901575	3.2.1.93	ko:K01226	ko00500,map00500		R00837,R06113	RC00049	ko00000,ko00001,ko01000		GH13	iECW_1372.ECW_m4600,iEKO11_1354.EKO11_4072,iEcE24377_1341.EcE24377A_4811,iEcSMS35_1347.EcSMS35_4720,iWFL_1372.ECW_m4600	Bacteria	1TP53@1239,3F41I@33958,4HA1G@91061,COG0366@1,COG0366@2	NA|NA|NA	G	Alpha amylase, catalytic domain protein
PAPOILPD_01117	1423748.BALB01000010_gene1095	4.6e-09	67.8	Lactobacillaceae													Bacteria	1U6TD@1239,2DKS5@1,30AKA@2,3F8GG@33958,4IGM6@91061	NA|NA|NA		
PAPOILPD_01118	1293597.BN147_10190	3.8e-17	93.2	Lactobacillaceae	guaB2												Bacteria	1TQNJ@1239,3F67A@33958,4HPRA@91061,COG2452@1,COG2452@2	NA|NA|NA	L	Resolvase, N terminal domain
PAPOILPD_01119	1408324.JNJK01000010_gene2137	2.8e-57	228.0	unclassified Lachnospiraceae				ko:K05833		M00247			ko00000,ko00002,ko02000				Bacteria	1TPAN@1239,247WW@186801,27IGK@186928,COG1101@1,COG1101@2	NA|NA|NA	S	ABC transporter
PAPOILPD_01120	353496.LBU_1612	1.5e-76	292.0	Lactobacillaceae	msrB		1.8.4.11,1.8.4.12	ko:K07305,ko:K12267					ko00000,ko01000				Bacteria	1UPN0@1239,3F6H4@33958,4HGWN@91061,COG0229@1,COG0229@2	NA|NA|NA	O	peptide methionine sulfoxide reductase
PAPOILPD_01121	353496.LBU_1613	4.7e-32	143.3	Lactobacillaceae	higA			ko:K21498					ko00000,ko02048				Bacteria	1VCFB@1239,3F7RE@33958,4IG6K@91061,COG3093@1,COG3093@2	NA|NA|NA	K	Helix-turn-helix XRE-family like proteins
PAPOILPD_01122	390333.Ldb1974	1.7e-187	661.8	Lactobacillaceae	rfbD		1.1.1.133,5.1.3.13	ko:K00067,ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777,R06514	RC00182,RC01531	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP71@1239,3F4QS@33958,4HBXF@91061,COG1091@1,COG1091@2	NA|NA|NA	M	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
PAPOILPD_01123	1293597.BN147_03625	4.8e-116	423.7	Lactobacillaceae	rfbC		5.1.3.13	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R06514	RC01531	ko00000,ko00001,ko00002,ko01000				Bacteria	1TRVB@1239,3F4FN@33958,4HFQB@91061,COG1898@1,COG1898@2	NA|NA|NA	M	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
PAPOILPD_01124	1293597.BN147_03620	1.3e-154	552.4	Lactobacillaceae	rfbA	GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005975,GO:0005976,GO:0005996,GO:0006006,GO:0006139,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008879,GO:0009058,GO:0009059,GO:0009117,GO:0009141,GO:0009147,GO:0009200,GO:0009211,GO:0009219,GO:0009225,GO:0009226,GO:0009262,GO:0009394,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019299,GO:0019300,GO:0019305,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019692,GO:0030312,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0045226,GO:0046075,GO:0046364,GO:0046379,GO:0046383,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901576	2.7.7.24	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	M00793	R02328	RC00002	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv0334	Bacteria	1V301@1239,3F4F8@33958,4H9R0@91061,COG1209@1,COG1209@2	NA|NA|NA	H	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PAPOILPD_01125	1293597.BN147_03615	2e-207	728.0	Lactobacillaceae	rfbB		4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPWM@1239,3F3R6@33958,4HA3Y@91061,COG1088@1,COG1088@2	NA|NA|NA	M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
PAPOILPD_01126	1293597.BN147_03610	3.8e-202	710.7	Lactobacillaceae													Bacteria	1TSDZ@1239,3FC6A@33958,4HBGU@91061,COG0500@1,COG0789@1,COG0789@2,COG2226@2	NA|NA|NA	KQ	Hypothetical methyltransferase
PAPOILPD_01127	353496.LBU_1615	6.8e-58	230.3	Lactobacillaceae				ko:K16137,ko:K22041					ko00000,ko03000				Bacteria	1V5RP@1239,3F6G7@33958,4HP5H@91061,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
PAPOILPD_01128	1293597.BN147_03605	1.5e-124	452.2	Lactobacillaceae	glpF			ko:K02440					ko00000,ko02000	1.A.8.1,1.A.8.2			Bacteria	1TP4T@1239,3F4J6@33958,4HAWP@91061,COG0580@1,COG0580@2	NA|NA|NA	U	Belongs to the MIP aquaporin (TC 1.A.8) family
PAPOILPD_01129	1133569.AHYZ01000044_gene1454	2.6e-43	181.4	Lactobacillaceae	dhaM	GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0047324	2.7.1.121	ko:K05881	ko00561,map00561		R01012	RC00015,RC00017	ko00000,ko00001,ko01000,ko02000				Bacteria	1VF32@1239,3F6YE@33958,4HKCN@91061,COG3412@1,COG3412@2	NA|NA|NA	S	PTS system fructose IIA component
PAPOILPD_01130	1605.Lani381_1265	4.1e-72	277.7	Lactobacillaceae	dhaL	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0046872,GO:0047324,GO:0097159,GO:0097367,GO:1901265,GO:1901363	2.7.1.121	ko:K05879	ko00561,ko01100,map00561,map01100		R01012	RC00015,RC00017	ko00000,ko00001,ko01000				Bacteria	1V4FH@1239,3F5VS@33958,4HGZY@91061,COG1461@1,COG1461@2	NA|NA|NA	S	Dak2
PAPOILPD_01131	575605.ACQN01000022_gene694	1.2e-151	542.7	Lactobacillaceae	dhaK	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019637,GO:0019751,GO:0033554,GO:0034308,GO:0042180,GO:0042182,GO:0042802,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0047324,GO:0050896,GO:0051716,GO:0061610,GO:0071704,GO:1901135,GO:1901575,GO:1901615	2.7.1.121,2.7.1.28,2.7.1.29,4.6.1.15	ko:K00863,ko:K05878,ko:K05879	ko00051,ko00561,ko00680,ko01100,ko01120,ko01200,ko04622,map00051,map00561,map00680,map01100,map01120,map01200,map04622	M00344	R01011,R01012,R01059	RC00002,RC00015,RC00017	ko00000,ko00001,ko00002,ko01000			iEcHS_1320.EcHS_A1304,iUMNK88_1353.UMNK88_1515,iYL1228.KPN_03495	Bacteria	1TP92@1239,3F4F2@33958,4H9VS@91061,COG2376@1,COG2376@2	NA|NA|NA	G	Dak1 domain
PAPOILPD_01132	1293597.BN147_03600	1.6e-113	416.0	Lactobacillaceae				ko:K02440					ko00000,ko02000	1.A.8.1,1.A.8.2			Bacteria	1TP7R@1239,3F48Q@33958,4HC84@91061,COG2244@1,COG2244@2	NA|NA|NA	S	Membrane protein involved in the export of O-antigen and teichoic acid
PAPOILPD_01133	1293597.BN147_05980	3.6e-30	137.9	Bacteria													Bacteria	COG1476@1,COG1476@2	NA|NA|NA	K	sequence-specific DNA binding
PAPOILPD_01134	353496.LBU_1511	3.2e-215	754.2	Lactobacillaceae	oxlT			ko:K08177					ko00000,ko02000	2.A.1.11			Bacteria	1TPR9@1239,3F4XT@33958,4HB93@91061,COG2223@1,COG2223@2	NA|NA|NA	P	Major Facilitator Superfamily
PAPOILPD_01135	1293597.BN147_05990	2.3e-132	478.4	Lactobacillaceae	malS		3.2.1.1	ko:K01176	ko00500,ko01100,ko04973,map00500,map01100,map04973		R02108,R02112,R11262		ko00000,ko00001,ko01000		GH13		Bacteria	1U7JS@1239,3F5JM@33958,4HF0J@91061,COG0366@1,COG0366@2	NA|NA|NA	G	Glycogen debranching enzyme, glucanotransferase domain
PAPOILPD_01136	353496.LBU_1510	2.8e-68	264.6	Lactobacillaceae	malS		3.2.1.1	ko:K01176	ko00500,ko01100,ko04973,map00500,map01100,map04973		R02108,R02112,R11262		ko00000,ko00001,ko01000		GH13		Bacteria	1U7JS@1239,3F5JM@33958,4HF0J@91061,COG0366@1,COG0366@2	NA|NA|NA	G	Glycogen debranching enzyme, glucanotransferase domain
PAPOILPD_01140	1293597.BN147_00785	2.2e-25	120.9	Lactobacillaceae	glgP	GO:0000272,GO:0003674,GO:0003824,GO:0004645,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0008144,GO:0008150,GO:0008152,GO:0008184,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0015980,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0055114,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901575	2.4.1.1	ko:K00688	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931		R02111		ko00000,ko00001,ko01000		GT35	iYO844.BSU30940	Bacteria	1TQAJ@1239,3F4Z1@33958,4H9XI@91061,COG0058@1,COG0058@2	NA|NA|NA	G	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
PAPOILPD_01141	1293597.BN147_00790	2.7e-38	164.5	Lactobacillaceae	malQ		2.4.1.25,3.2.1.20,3.2.1.41	ko:K00705,ko:K01187,ko:K01200	ko00052,ko00500,ko01100,ko01110,map00052,map00500,map01100,map01110		R00028,R00801,R00802,R02111,R05196,R06087,R06088	RC00028,RC00049,RC00077	ko00000,ko00001,ko01000		CBM48,GH13,GH31,GH77		Bacteria	1TNZ0@1239,3F41N@33958,4HB67@91061,COG0366@1,COG0366@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 13 family
PAPOILPD_01142	1293597.BN147_00790	4.4e-129	467.6	Lactobacillaceae	malQ		2.4.1.25,3.2.1.20,3.2.1.41	ko:K00705,ko:K01187,ko:K01200	ko00052,ko00500,ko01100,ko01110,map00052,map00500,map01100,map01110		R00028,R00801,R00802,R02111,R05196,R06087,R06088	RC00028,RC00049,RC00077	ko00000,ko00001,ko01000		CBM48,GH13,GH31,GH77		Bacteria	1TNZ0@1239,3F41N@33958,4HB67@91061,COG0366@1,COG0366@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 13 family
PAPOILPD_01143	353496.LBU_1503	0.0	1138.3	Lactobacillaceae	pgm	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	5.4.2.2,5.4.2.8	ko:K01835,ko:K01840	ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	M00114,M00549	R00959,R01057,R01818,R08639	RC00408	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP2N@1239,3F457@33958,4HADU@91061,COG1109@1,COG1109@2	NA|NA|NA	G	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
PAPOILPD_01144	353496.LBU_1502	1.3e-196	692.2	Lactobacillaceae	pfkA		2.7.1.11,2.7.1.90	ko:K00850,ko:K21071	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	M00001,M00345	R00756,R00764,R02073,R03236,R03237,R03238,R03239,R04779	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019			iJN678.pfkA	Bacteria	1TPF4@1239,3F4SA@33958,4HU45@91061,COG0205@1,COG0205@2	NA|NA|NA	F	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
PAPOILPD_01145	1293597.BN147_00805	5.4e-302	1043.1	Lactobacillaceae	scrA		2.7.1.211,5.3.1.1	ko:K01803,ko:K02808,ko:K02809,ko:K02810	ko00010,ko00051,ko00500,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko02060,map00010,map00051,map00500,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map02060	M00001,M00002,M00003,M00269	R00811,R01015	RC00017,RC00423,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000,ko04147	4.A.1.2.1,4.A.1.2.10,4.A.1.2.12,4.A.1.2.9			Bacteria	1TP5X@1239,3F458@33958,4HA0I@91061,COG1263@1,COG1263@2,COG1264@1,COG1264@2,COG2190@1,COG2190@2	NA|NA|NA	G	phosphotransferase system
PAPOILPD_01146	1293597.BN147_00810	2.5e-235	821.2	Lactobacillaceae	scrB		3.2.1.26	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00801,R00802,R02410,R03635,R03921,R06088	RC00028,RC00077	ko00000,ko00001,ko01000		GH32		Bacteria	1TPAE@1239,3F4UD@33958,4H9Y7@91061,COG1621@1,COG1621@2	NA|NA|NA	G	invertase
PAPOILPD_01147	1293597.BN147_00815	3.3e-154	551.2	Lactobacillaceae	scrR			ko:K02529,ko:K03484					ko00000,ko03000				Bacteria	1TQ7K@1239,3F4JE@33958,4H9V1@91061,COG1609@1,COG1609@2	NA|NA|NA	K	Transcriptional regulator, LacI family
PAPOILPD_01148	353496.LBU_1499	1.4e-21	108.2	Lactobacillaceae													Bacteria	1U8B6@1239,2AJ05@1,319I6@2,3FASM@33958,4II96@91061	NA|NA|NA		
PAPOILPD_01149	390333.Ldb1765	3.4e-97	360.9	Lactobacillaceae													Bacteria	1VHRC@1239,3F6M3@33958,4IE00@91061,COG0454@1,COG0456@2	NA|NA|NA	K	Acetyltransferase (GNAT) domain
PAPOILPD_01153	390333.Ldb1761	5.6e-275	953.0	Lactobacillaceae	thrC		4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS16355,iIT341.HP0098	Bacteria	1TPR0@1239,3F3UF@33958,4H9R7@91061,COG0498@1,COG0498@2	NA|NA|NA	E	Threonine synthase
PAPOILPD_01154	353496.LBU_1495	4.4e-155	553.9	Lactobacillaceae	thrB	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004413,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009088,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019202,GO:0019752,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.1.39	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	M00018	R01771	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000			iECSE_1348.ECSE_0003,iJN678.thrB,iLJ478.TM0545,iSB619.SA_RS06620	Bacteria	1TRWS@1239,3F44T@33958,4HCQN@91061,COG0083@1,COG0083@2	NA|NA|NA	F	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
PAPOILPD_01157	390333.Ldb1755	4.7e-77	294.7	Lactobacillaceae													Bacteria	1V773@1239,3F3JQ@33958,4HIJG@91061,COG1388@1,COG1388@2	NA|NA|NA	M	LysM domain protein
PAPOILPD_01158	390333.Ldb1751	1.2e-139	502.7	Lactobacillaceae													Bacteria	1U570@1239,3F4ZJ@33958,4IEYI@91061,COG1196@1,COG1196@2	NA|NA|NA	D	nuclear chromosome segregation
PAPOILPD_01159	353496.LBU_0852	0.0	1824.7	Lactobacillaceae	dinG	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234	2.7.7.7,3.6.4.12	ko:K02342,ko:K03722	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	1TQHQ@1239,3F4KA@33958,4HB2Y@91061,COG0847@1,COG0847@2,COG1199@1,COG1199@2	NA|NA|NA	L	helicase involved in DNA repair and perhaps also replication
PAPOILPD_01160	390333.Ldb1001	0.0	2313.9	Lactobacillaceae	addA		3.6.4.12	ko:K16898					ko00000,ko01000,ko03400				Bacteria	1TQ35@1239,3F3Z0@33958,4HA64@91061,COG1074@1,COG1074@2	NA|NA|NA	L	ATP-dependent helicase nuclease subunit A
PAPOILPD_01161	353496.LBU_0850	0.0	2276.9	Lactobacillaceae	rexB	GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004519,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0140097,GO:1901360	3.1.21.3,3.6.4.12	ko:K01153,ko:K16899					ko00000,ko01000,ko02048,ko03400				Bacteria	1TQJW@1239,3FCA9@33958,4HK67@91061,COG3857@1,COG3857@2	NA|NA|NA	L	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
PAPOILPD_01162	353496.LBU_0849	4.6e-163	580.5	Lactobacillaceae	mvk		1.1.1.88,2.3.3.10,2.7.1.36	ko:K00054,ko:K00869,ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,ko04146,map00072,map00280,map00650,map00900,map01100,map01110,map01130,map04146	M00088,M00095	R01978,R02081,R02245	RC00002,RC00004,RC00017,RC00503,RC00644	ko00000,ko00001,ko00002,ko01000				Bacteria	1UFCB@1239,3FBNI@33958,4HG49@91061,COG1577@1,COG1577@2	NA|NA|NA	I	GHMP kinases N terminal domain
PAPOILPD_01163	353496.LBU_0848	2.3e-173	614.8	Lactobacillaceae	mvaD		4.1.1.33	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00095	R01121	RC00453	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQXR@1239,3F4B5@33958,4HAM6@91061,COG3407@1,COG3407@2	NA|NA|NA	I	diphosphomevalonate decarboxylase
PAPOILPD_01164	353496.LBU_0847	3.9e-201	707.2	Lactobacillaceae	mvaK2		2.7.1.36,2.7.1.43,2.7.4.2	ko:K00869,ko:K00938,ko:K16190	ko00040,ko00053,ko00520,ko00900,ko01100,ko01110,ko01130,ko04146,map00040,map00053,map00520,map00900,map01100,map01110,map01130,map04146	M00014,M00095	R01476,R02245,R03245	RC00002,RC00017,RC00078	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPKP@1239,3F3RZ@33958,4HC93@91061,COG1577@1,COG1577@2	NA|NA|NA	I	phosphomevalonate kinase
PAPOILPD_01165	353496.LBU_0846	5e-190	670.2	Lactobacillaceae	fni		1.1.1.88,5.3.3.2	ko:K00054,ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00095,M00096,M00364,M00365,M00366,M00367	R01123,R02081	RC00004,RC00455,RC00644	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQZ3@1239,3F3UY@33958,4HAMV@91061,COG1304@1,COG1304@2	NA|NA|NA	C	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
PAPOILPD_01166	353496.LBU_0845	2.6e-169	601.3	Lactobacillaceae	ppaC	GO:0003674,GO:0003824,GO:0004427,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0044237,GO:0044424,GO:0044464	3.6.1.1	ko:K15986	ko00190,map00190				ko00000,ko00001,ko01000				Bacteria	1TPH6@1239,3F3PJ@33958,4H9T8@91061,COG1227@1,COG1227@2	NA|NA|NA	C	inorganic pyrophosphatase
PAPOILPD_01167	390333.Ldb0994	0.0	1518.4	Lactobacillaceae	parC	GO:0005575,GO:0005622,GO:0005623,GO:0009330,GO:0032991,GO:0044424,GO:0044464	5.99.1.3	ko:K02469,ko:K02621					ko00000,ko01000,ko02048,ko03032,ko03036,ko03400				Bacteria	1TRE7@1239,3F3MJ@33958,4HAQB@91061,COG0188@1,COG0188@2	NA|NA|NA	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PAPOILPD_01168	353496.LBU_0843	0.0	1218.8	Lactobacillaceae	parE	GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034335,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360	5.99.1.3	ko:K02470,ko:K02622					ko00000,ko01000,ko02048,ko03032,ko03036,ko03400				Bacteria	1TQCF@1239,3F430@33958,4H9UC@91061,COG0187@1,COG0187@2	NA|NA|NA	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PAPOILPD_01169	1293597.BN147_10320	6.9e-97	360.1	Lactobacillaceae	plsY	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.3.1.15,3.5.1.104	ko:K08591,ko:K22278	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1VA3J@1239,3F543@33958,4HC55@91061,COG0344@1,COG0344@2	NA|NA|NA	I	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
PAPOILPD_01170	334390.LAF_1464	1.1e-110	406.0	Lactobacillaceae	flp		4.1.99.16,4.2.3.22,4.2.3.75	ko:K10187,ko:K21562	ko00909,ko01100,ko01110,map00909,map01100,map01110		R07647,R07648,R08543,R09487	RC01832,RC02159,RC02160,RC02183,RC02425,RC02552	ko00000,ko00001,ko01000,ko03000				Bacteria	1V3XW@1239,3F4YM@33958,4HDG1@91061,COG0664@1,COG0664@2	NA|NA|NA	K	Transcriptional regulator, Crp Fnr family
PAPOILPD_01171	334390.LAF_1465	7.8e-45	186.0	Lactobacillaceae				ko:K07322					ko00000				Bacteria	1VI78@1239,3F71U@33958,4HPAS@91061,COG2846@1,COG2846@2	NA|NA|NA	D	Di-iron-containing protein involved in the repair of iron-sulfur clusters
PAPOILPD_01172	353496.LBU_0397	4.3e-33	146.7	Lactobacillaceae	copZ			ko:K07213	ko04978,map04978				ko00000,ko00001				Bacteria	1VFJ8@1239,3F830@33958,4HNY2@91061,COG2608@1,COG2608@2	NA|NA|NA	P	Heavy-metal-associated domain
PAPOILPD_01173	31954.BPSP_1152	0.0	1154.0	Bifidobacteriales	cadA		3.6.3.3,3.6.3.5	ko:K01534					ko00000,ko01000	3.A.3.6			Bacteria	2GIRF@201174,4CZRE@85004,COG2217@1,COG2217@2	NA|NA|NA	P	E1-E2 ATPase
PAPOILPD_01174	334390.LAF_1161	2.2e-188	664.8	Lactobacillaceae	carB		6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000				Bacteria	1VRNP@1239,3FC3W@33958,4HTJU@91061,COG0458@1,COG0458@2	NA|NA|NA	F	Carbamoyl-phosphate synthase
PAPOILPD_01175	334390.LAF_1160	4.4e-120	437.2	Lactobacillaceae	cah		4.2.1.1	ko:K01674	ko00910,map00910		R00132,R10092	RC02807	ko00000,ko00001,ko01000				Bacteria	1V16J@1239,3F60I@33958,4HA62@91061,COG3338@1,COG3338@2	NA|NA|NA	P	Eukaryotic-type carbonic anhydrase
PAPOILPD_01176	353496.LBU_0392	2.7e-144	518.1	Lactobacillaceae				ko:K07448					ko00000,ko02048				Bacteria	1V6AF@1239,3FBMS@33958,4IR7C@91061,COG1715@1,COG1715@2	NA|NA|NA	L	Mrr N-terminal domain
PAPOILPD_01177	353496.LBU_0391	3.8e-254	883.6	Lactobacillaceae	rumA	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070041,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.190	ko:K03215					ko00000,ko01000,ko03009				Bacteria	1TP4H@1239,3F41R@33958,4HA6M@91061,COG2265@1,COG2265@2	NA|NA|NA	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PAPOILPD_01178	390333.Ldb0472	6.7e-109	400.2	Lactobacillaceae													Bacteria	1VNI3@1239,3F5J9@33958,4HSHZ@91061,COG3548@1,COG3548@2	NA|NA|NA	S	Protein of unknown function (DUF1211)
PAPOILPD_01179	353496.LBU_0389	1.5e-169	602.1	Lactobacillaceae	yegS	GO:0001727,GO:0003674,GO:0003824,GO:0004143,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0030258,GO:0044237,GO:0044238,GO:0044255,GO:0046834,GO:0071704	2.7.1.107	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110		R02240	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	1TQAU@1239,3F447@33958,4H9WD@91061,COG1597@1,COG1597@2	NA|NA|NA	G	Lipid kinase
PAPOILPD_01180	353496.LBU_0388	5.4e-275	953.0	Lactobacillaceae	gatB	GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.1.1.12,6.3.5.6,6.3.5.7	ko:K01876,ko:K02434	ko00970,ko01100,map00970,map01100	M00359,M00360	R03905,R04212,R05577	RC00010,RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029				Bacteria	1TPG3@1239,3F44H@33958,4HAFB@91061,COG0064@1,COG0064@2	NA|NA|NA	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PAPOILPD_01181	353496.LBU_0387	9.6e-264	915.6	Lactobacillaceae	gatA		6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100		R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029				Bacteria	1TP0C@1239,3F4BK@33958,4HBAZ@91061,COG0154@1,COG0154@2	NA|NA|NA	J	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
PAPOILPD_01182	353496.LBU_0386	2e-46	191.4	Lactobacillaceae	gatC		6.3.5.6,6.3.5.7	ko:K02435	ko00970,ko01100,map00970,map01100		R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029			iAF987.Gmet_0076	Bacteria	1VEK3@1239,3F7XB@33958,4HNNA@91061,COG0721@1,COG0721@2	NA|NA|NA	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PAPOILPD_01183	353496.LBU_0385	4.7e-189	667.2	Lactobacillaceae	camS												Bacteria	1TSYE@1239,3F3KI@33958,4HBI8@91061,COG4851@1,COG4851@2	NA|NA|NA	S	sex pheromone
PAPOILPD_01184	390333.Ldb0466	0.0	1292.7	Lactobacillaceae	ligA	GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430		R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400				Bacteria	1TPQ3@1239,3F43C@33958,4HA1D@91061,COG0272@1,COG0272@2	NA|NA|NA	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PAPOILPD_01185	353496.LBU_0383	0.0	1401.7	Lactobacillaceae	pcrA		3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPSU@1239,3F400@33958,4HB12@91061,COG0210@1,COG0210@2	NA|NA|NA	L	ATP-dependent DNA helicase
PAPOILPD_01186	1293597.BN147_10195	1.2e-70	272.3	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01187	353496.LBU_0188	0.0	1919.8	Lactobacillaceae	XK27_08315												Bacteria	1TQYQ@1239,3F3NY@33958,4HBY6@91061,COG1368@1,COG1368@2	NA|NA|NA	M	Sulfatase
PAPOILPD_01188	353496.LBU_0187	1.4e-107	395.6	Lactobacillaceae	plsY		2.3.1.15	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	1VAFC@1239,3F5HQ@33958,4HMJZ@91061,COG0344@1,COG0344@2	NA|NA|NA	I	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
PAPOILPD_01189	353496.LBU_0186	5.8e-204	716.8	Lactobacillaceae	brpA												Bacteria	1TR1B@1239,3F3MQ@33958,4HA09@91061,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-like function transcriptional attenuator common domain protein
PAPOILPD_01190	353496.LBU_0185	3.9e-130	470.7	Lactobacillaceae	gpmA	GO:0001871,GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009986,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030246,GO:0030247,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031,GO:2001065	5.4.2.11	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147				Bacteria	1TQFP@1239,3F3SK@33958,4HAW7@91061,COG0588@1,COG0588@2	NA|NA|NA	G	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PAPOILPD_01191	353496.LBU_0184	3.3e-130	471.1	Lactobacillaceae													Bacteria	1U59S@1239,2E0R1@1,32W9E@2,3F5B0@33958,4IF1B@91061	NA|NA|NA		
PAPOILPD_01192	1293597.BN147_03640	1e-123	449.9	Lactobacillaceae				ko:K22230	ko00562,ko01120,map00562,map01120		R09954	RC00182	ko00000,ko00001,ko01000				Bacteria	1TQSS@1239,3F4EV@33958,4HCIG@91061,COG0673@1,COG0673@2	NA|NA|NA	S	Oxidoreductase
PAPOILPD_01193	353496.LBU_0181	0.0	1131.3	Lactobacillaceae	yjbQ			ko:K03455,ko:K03499					ko00000,ko02000	2.A.37,2.A.38.1,2.A.38.4			Bacteria	1TS32@1239,3F4AZ@33958,4H9Q5@91061,COG0475@1,COG0475@2,COG0569@1,COG0569@2	NA|NA|NA	P	TrkA C-terminal domain protein
PAPOILPD_01194	390333.Ldb0225	5.1e-255	886.7	Lactobacillaceae	atl		3.2.1.96,3.5.1.28	ko:K01447,ko:K13714			R04112	RC00064,RC00141	ko00000,ko01000		GH73		Bacteria	1V3MY@1239,3F4BU@33958,4HBWG@91061,COG5632@1,COG5632@2	NA|NA|NA	M	N-acetylmuramoyl-L-alanine amidase
PAPOILPD_01195	353496.LBU_0178	3.8e-173	614.4	Lactobacillaceae				ko:K02395					ko00000,ko02035				Bacteria	1TVPT@1239,3F4I7@33958,4HC0X@91061,COG1705@1,COG1705@2	NA|NA|NA	NU	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
PAPOILPD_01196	353496.LBU_0177	1.5e-33	148.3	Firmicutes													Bacteria	1VKCM@1239,2DR42@1,33A2M@2	NA|NA|NA	S	Protein of unknown function (DUF2922)
PAPOILPD_01197	390333.Ldb0222	3.4e-29	133.7	Lactobacillaceae													Bacteria	1U6IH@1239,2AQKB@1,31FT9@2,3F7ZB@33958,4IGAU@91061	NA|NA|NA		
PAPOILPD_01198	353496.LBU_0175	5.1e-80	304.7	Lactobacillaceae													Bacteria	1U60X@1239,2ADX8@1,313PC@2,3F6T4@33958,4IFPQ@91061	NA|NA|NA		
PAPOILPD_01199	353496.LBU_0174	7.2e-71	273.1	Lactobacillaceae													Bacteria	1U5KK@1239,29NU4@1,309S8@2,3F65J@33958,4IFBH@91061	NA|NA|NA		
PAPOILPD_01200	353496.LBU_0173	0.0	1238.0	Lactobacillaceae	kup	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662		ko:K03549					ko00000,ko02000	2.A.72			Bacteria	1TRUQ@1239,3F4CU@33958,4HA8Z@91061,COG3158@1,COG3158@2	NA|NA|NA	P	Transport of potassium into the cell
PAPOILPD_01201	353496.LBU_1094	2.6e-115	421.4	Lactobacillaceae	hlyIII			ko:K11068					ko00000,ko02042				Bacteria	1TSFK@1239,3F578@33958,4HAT2@91061,COG1272@1,COG1272@2	NA|NA|NA	S	protein, hemolysin III
PAPOILPD_01202	353496.LBU_1093	3.6e-154	550.8	Lactobacillaceae	DegV												Bacteria	1TRM7@1239,3FC90@33958,4HBIR@91061,COG1307@1,COG1307@2	NA|NA|NA	S	Uncharacterised protein, DegV family COG1307
PAPOILPD_01203	353496.LBU_1092	5.5e-36	156.4	Lactobacillaceae	yozE												Bacteria	1VFI4@1239,3F7ZP@33958,4HR7P@91061,COG4479@1,COG4479@2	NA|NA|NA	S	Belongs to the UPF0346 family
PAPOILPD_01204	390333.Ldb1276	3.5e-160	570.9	Lactobacillaceae	ylqF	GO:0003674,GO:0003824,GO:0003924,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022613,GO:0042254,GO:0044085,GO:0071840		ko:K14540					ko00000,ko03009				Bacteria	1TQGK@1239,3F3MI@33958,4HA4D@91061,COG1161@1,COG1161@2	NA|NA|NA	S	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
PAPOILPD_01205	390333.Ldb1275	6.3e-137	493.4	Lactobacillaceae	rnhB	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576	3.1.26.4	ko:K03470	ko03030,map03030				ko00000,ko00001,ko01000,ko03032				Bacteria	1V1D6@1239,3F3JC@33958,4HB7M@91061,COG0164@1,COG0164@2	NA|NA|NA	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PAPOILPD_01206	353496.LBU_1089	3.4e-152	544.3	Lactobacillaceae	dprA	GO:0007154,GO:0008150,GO:0009292,GO:0009294,GO:0009605,GO:0009987,GO:0009991,GO:0030420,GO:0031668,GO:0044764,GO:0050896,GO:0051704,GO:0051716,GO:0071496		ko:K04096					ko00000				Bacteria	1TPP7@1239,3F41U@33958,4HGWM@91061,COG0758@1,COG0758@2	NA|NA|NA	LU	DNA protecting protein DprA
PAPOILPD_01207	390333.Ldb1273	0.0	1318.1	Lactobacillaceae	topA		5.99.1.2	ko:K03168					ko00000,ko01000,ko03032,ko03400				Bacteria	1TPUS@1239,3F3VS@33958,4HA6C@91061,COG0550@1,COG0550@2	NA|NA|NA	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PAPOILPD_01208	353496.LBU_1086	3.7e-246	857.1	Lactobacillaceae	trmFO	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363	2.1.1.74	ko:K04094					ko00000,ko01000,ko03016,ko03036				Bacteria	1TP67@1239,3F3WW@33958,4HB27@91061,COG1206@1,COG1206@2	NA|NA|NA	J	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
PAPOILPD_01209	390333.Ldb1271	4.5e-163	580.5	Lactobacillaceae	xerC			ko:K03733,ko:K04763					ko00000,ko03036				Bacteria	1TQRG@1239,3FBHU@33958,4IQMI@91061,COG4974@1,COG4974@2	NA|NA|NA	D	Phage integrase, N-terminal SAM-like domain
PAPOILPD_01210	353496.LBU_1084	1.7e-88	332.0	Lactobacillaceae	hslV	GO:0000166,GO:0000287,GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004298,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009266,GO:0009376,GO:0009408,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0017076,GO:0019538,GO:0019904,GO:0022607,GO:0030163,GO:0030554,GO:0031597,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034214,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051259,GO:0051603,GO:0065003,GO:0070003,GO:0070011,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904949,GO:1905368,GO:1905369	3.4.25.2	ko:K01419					ko00000,ko01000,ko01002				Bacteria	1TPXK@1239,3F4HS@33958,4H9PD@91061,COG5405@1,COG5405@2	NA|NA|NA	O	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
PAPOILPD_01211	353496.LBU_1083	5e-241	840.1	Lactobacillaceae	hslU	GO:0000166,GO:0000287,GO:0000502,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009376,GO:0009408,GO:0009628,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019904,GO:0022607,GO:0030554,GO:0031597,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034214,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043335,GO:0043933,GO:0044085,GO:0044238,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051259,GO:0065003,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1904949,GO:1905368,GO:1905369		ko:K03667					ko00000,ko03110				Bacteria	1TPKQ@1239,3F3WB@33958,4HA83@91061,COG1220@1,COG1220@2	NA|NA|NA	O	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
PAPOILPD_01212	353496.LBU_1082	4e-175	620.5	Lactobacillaceae	lacX		5.1.3.3	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	M00632	R01602,R10619	RC00563	ko00000,ko00001,ko00002,ko01000				Bacteria	1U26T@1239,3F3KT@33958,4HA4J@91061,COG2017@1,COG2017@2	NA|NA|NA	G	Aldose 1-epimerase
PAPOILPD_01213	1293597.BN147_04970	4.7e-12	77.0	Lactobacillaceae				ko:K02004,ko:K03646		M00258			ko00000,ko00002,ko02000	2.C.1.2,3.A.1			Bacteria	1UHXY@1239,3F52E@33958,4ISAC@91061,COG3064@1,COG3064@2	NA|NA|NA	M	Rib/alpha-like repeat
PAPOILPD_01215	390333.Ldb1266	9.9e-105	386.3	Lactobacillaceae													Bacteria	1U7KM@1239,29Q6V@1,30B5V@2,3F9VH@33958,4IHHP@91061	NA|NA|NA		
PAPOILPD_01217	353496.LBU_1080	1.1e-250	872.1	Lactobacillaceae	lysA		4.1.1.19,4.1.1.20	ko:K01585,ko:K01586	ko00300,ko00330,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map00330,map01100,map01110,map01120,map01130,map01230	M00016,M00133,M00525,M00526,M00527	R00451,R00566	RC00299	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS18870	Bacteria	1TPE9@1239,3F3VJ@33958,4H9XW@91061,COG0019@1,COG0019@2	NA|NA|NA	E	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
PAPOILPD_01218	353496.LBU_1079	4.7e-224	783.5	Lactobacillaceae	patA		2.6.1.1	ko:K00812,ko:K00841,ko:K10907	ko00220,ko00250,ko00270,ko00300,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00300,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	M00525	R00355,R00694,R00734,R00896,R02433,R02619,R04467,R05052	RC00006	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	1TP0J@1239,3F3MX@33958,4HA13@91061,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase
PAPOILPD_01219	353496.LBU_1022	6.8e-71	273.1	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01220	748671.LCRIS_00061	1.8e-74	285.4	Firmicutes													Bacteria	1VGFB@1239,2DPM9@1,332MQ@2	NA|NA|NA		
PAPOILPD_01221	999415.HMPREF9943_01777	1.8e-82	313.2	Erysipelotrichia	cydD	GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0071702		ko:K06147,ko:K06148					ko00000,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	1TQ1P@1239,3VPXY@526524,COG4988@1,COG4988@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_01222	353496.LBU_0803	2.7e-274	950.7	Lactobacillaceae	sufB	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360		ko:K07033,ko:K09014					ko00000				Bacteria	1TQ21@1239,3F44I@33958,4HA1Z@91061,COG0719@1,COG0719@2	NA|NA|NA	O	assembly protein SufB
PAPOILPD_01223	390333.Ldb1818	2.8e-73	281.2	Lactobacillaceae	nifU	GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0010467,GO:0016740,GO:0016782,GO:0019538,GO:0019725,GO:0030003,GO:0036455,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0097428,GO:0098771,GO:1901564		ko:K04488					ko00000				Bacteria	1V3H9@1239,3F6WP@33958,4HIJ0@91061,COG0822@1,COG0822@2	NA|NA|NA	C	SUF system FeS assembly protein, NifU family
PAPOILPD_01224	353496.LBU_0801	3.7e-224	783.9	Lactobacillaceae	sufS		2.8.1.7,4.4.1.16	ko:K04487,ko:K11717	ko00450,ko00730,ko01100,ko04122,map00450,map00730,map01100,map04122		R03599,R07460,R11528,R11529	RC00961,RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029				Bacteria	1TQ1W@1239,3F3UP@33958,4HA6Z@91061,COG0520@1,COG0520@2	NA|NA|NA	E	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PAPOILPD_01225	353496.LBU_0800	1.1e-217	762.3	Lactobacillaceae	sufD			ko:K07033,ko:K09015					ko00000				Bacteria	1TRT0@1239,3F4BR@33958,4HB6W@91061,COG0719@1,COG0719@2	NA|NA|NA	O	FeS assembly protein SufD
PAPOILPD_01226	353496.LBU_0799	2.7e-143	514.6	Lactobacillaceae	sufC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840		ko:K09013					ko00000,ko02000			iECH74115_1262.ECH74115_2396,iECIAI1_1343.ECIAI1_1734,iECIAI39_1322.ECIAI39_1376,iECSP_1301.ECSP_2249,iECs_1301.ECs2389,iEcSMS35_1347.EcSMS35_1514,iG2583_1286.G2583_2077,iSFV_1184.SFV_1705,iSFxv_1172.SFxv_1919,iSSON_1240.SSON_1474,iS_1188.S1844,iZ_1308.Z2710	Bacteria	1TQ98@1239,3F3XT@33958,4HAD9@91061,COG0396@1,COG0396@2	NA|NA|NA	O	FeS assembly ATPase SufC
PAPOILPD_01227	353496.LBU_0798	3.9e-81	307.4	Lactobacillaceae	yjcF			ko:K02348					ko00000				Bacteria	1VA2J@1239,3F6HQ@33958,4HKF5@91061,COG2153@1,COG2153@2	NA|NA|NA	S	Acetyltransferase (GNAT) domain
PAPOILPD_01228	353496.LBU_0797	2.8e-82	311.2	Lactobacillaceae	pts23A			ko:K02777	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	M00265,M00266,M00268,M00270,M00272,M00303,M00806	R02738,R02780,R04111,R04394,R05132,R08559	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.1.1.1			Bacteria	1VAEB@1239,3FC0X@33958,4HIPR@91061,COG2190@1,COG2190@2	NA|NA|NA	G	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
PAPOILPD_01229	390333.Ldb1824	1.8e-84	318.5	Lactobacillaceae													Bacteria	1U5P7@1239,2CJCY@1,309TS@2,3F69B@33958,4IFDR@91061	NA|NA|NA		
PAPOILPD_01230	1293597.BN147_01570	1.5e-106	392.5	Lactobacillaceae	glvR			ko:K03481					ko00000,ko03000				Bacteria	1TR69@1239,3F46J@33958,4HE3S@91061,COG1737@1,COG1737@2	NA|NA|NA	K	Helix-turn-helix domain, rpiR family
PAPOILPD_01231	1293597.BN147_01575	1.5e-136	492.3	Lactobacillaceae	glvC		2.7.1.199,2.7.1.208	ko:K02749,ko:K02750,ko:K02790,ko:K02791	ko00010,ko00500,ko00520,ko02060,map00010,map00500,map00520,map02060	M00266,M00268	R02738,R04111	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.1.1.10,4.A.1.1.16,4.A.1.1.3,4.A.1.1.4,4.A.1.1.8			Bacteria	1TPJ8@1239,3F44V@33958,4HA8X@91061,COG1263@1,COG1263@2,COG1264@1,COG1264@2	NA|NA|NA	G	phosphotransferase system, EIIB
PAPOILPD_01232	1293597.BN147_01575	4.2e-171	607.4	Lactobacillaceae	glvC		2.7.1.199,2.7.1.208	ko:K02749,ko:K02750,ko:K02790,ko:K02791	ko00010,ko00500,ko00520,ko02060,map00010,map00500,map00520,map02060	M00266,M00268	R02738,R04111	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.1.1.10,4.A.1.1.16,4.A.1.1.3,4.A.1.1.4,4.A.1.1.8			Bacteria	1TPJ8@1239,3F44V@33958,4HA8X@91061,COG1263@1,COG1263@2,COG1264@1,COG1264@2	NA|NA|NA	G	phosphotransferase system, EIIB
PAPOILPD_01233	1293597.BN147_01580	7.8e-260	902.5	Lactobacillaceae	aglB		3.2.1.122,3.2.1.86	ko:K01222,ko:K01232	ko00010,ko00500,map00010,map00500		R00837,R00838,R00839,R05133,R05134,R06113	RC00049,RC00171,RC00714	ko00000,ko00001,ko01000		GH4,GT4		Bacteria	1TQ9I@1239,3F4W5@33958,4H9TM@91061,COG1486@1,COG1486@2	NA|NA|NA	G	Family 4 glycosyl hydrolase C-terminal domain
PAPOILPD_01235	353496.LBU_0793	1.2e-118	432.6	Bacilli				ko:K02003		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TPBJ@1239,4HBMF@91061,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_01236	390333.Ldb1829	3.5e-214	750.7	Lactobacillaceae													Bacteria	1U8J6@1239,29QS0@1,30BRV@2,3FB1K@33958,4IIH5@91061	NA|NA|NA	S	FtsX-like permease family
PAPOILPD_01239	353496.LBU_1022	6.8e-71	273.1	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01240	353496.LBU_0018	1.3e-157	562.4	Lactobacillaceae													Bacteria	1TSRV@1239,3F46B@33958,4HCIZ@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC-type multidrug transport system, ATPase and permease components
PAPOILPD_01242	1293597.BN147_02660	3.4e-21	107.1	Lactobacillaceae													Bacteria	1V6FK@1239,3F73Q@33958,4HKZD@91061,COG1959@1,COG1959@2	NA|NA|NA	K	Transcriptional regulator
PAPOILPD_01243	1293597.BN147_02660	2.2e-37	161.4	Lactobacillaceae													Bacteria	1V6FK@1239,3F73Q@33958,4HKZD@91061,COG1959@1,COG1959@2	NA|NA|NA	K	Transcriptional regulator
PAPOILPD_01244	257314.LJ_0250	9.6e-33	146.0	Lactobacillaceae			1.1.1.1	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220		R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000				Bacteria	1TQ0M@1239,3F4EJ@33958,4HA8M@91061,COG0604@1,COG0604@2	NA|NA|NA	C	nadph quinone reductase
PAPOILPD_01245	353496.LBU_0019	7.6e-112	409.8	Lactobacillaceae	ybbL	GO:0005575,GO:0005623,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0009987,GO:0016020,GO:0019725,GO:0030003,GO:0042592,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071944,GO:0098771		ko:K02065,ko:K02068	ko02010,map02010	M00210,M00211,M00669,M00670			ko00000,ko00001,ko00002,ko02000	3.A.1.27			Bacteria	1V3DQ@1239,3F4UY@33958,4HHGU@91061,COG4619@1,COG4619@2	NA|NA|NA	S	ABC transporter, ATP-binding protein
PAPOILPD_01246	390333.Ldb0036	6.7e-131	473.4	Lactobacillaceae	ybbM	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0009987,GO:0015075,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0030003,GO:0031224,GO:0031226,GO:0034220,GO:0042592,GO:0044425,GO:0044459,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0098771		ko:K02069		M00211			ko00000,ko00002,ko02000	9.B.25.1			Bacteria	1UY1N@1239,3F4P1@33958,4HDM4@91061,COG0390@1,COG0390@2	NA|NA|NA	S	Uncharacterised protein family (UPF0014)
PAPOILPD_01247	1545701.LACWKB10_0634	7.6e-12	76.3	Lactobacillaceae													Bacteria	1U6PM@1239,2BU0G@1,32P91@2,3F89C@33958,4IGGK@91061	NA|NA|NA		
PAPOILPD_01248	390333.Ldb0038	5.9e-163	580.5	Lactobacillaceae	lysA2			ko:K07273					ko00000				Bacteria	1VF8D@1239,3F4U9@33958,4HX0U@91061,COG3757@1,COG3757@2	NA|NA|NA	M	Glycosyl hydrolases family 25
PAPOILPD_01249	1293597.BN147_09950	1.2e-86	325.9	Lactobacillaceae													Bacteria	1V8P4@1239,3F65X@33958,4HVM8@91061,COG0454@1,COG0456@2	NA|NA|NA	K	Acetyltransferase (GNAT) domain
PAPOILPD_01250	353496.LBU_0023	2.4e-150	538.1	Lactobacillaceae	pdxK		2.7.1.35	ko:K00868	ko00750,ko01100,map00750,map01100		R00174,R01909,R02493	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	1TRCR@1239,3F3V7@33958,4HHME@91061,COG2240@1,COG2240@2	NA|NA|NA	H	Phosphomethylpyrimidine kinase
PAPOILPD_01251	353496.LBU_0024	3.2e-90	337.8	Lactobacillaceae				ko:K16923		M00582			ko00000,ko00002,ko02000	3.A.1.28			Bacteria	1V52B@1239,3F4W9@33958,4HKM2@91061,COG4720@1,COG4720@2	NA|NA|NA	S	ECF-type riboflavin transporter, S component
PAPOILPD_01252	353496.LBU_0025	0.0	1818.9	Lactobacillaceae													Bacteria	1TQ62@1239,3F3YQ@33958,4HAJ1@91061,COG1061@1,COG1061@2,COG3886@1,COG3886@2	NA|NA|NA	L	Helicase C-terminal domain protein
PAPOILPD_01253	353496.LBU_0026	2.6e-92	345.1	Bacteria													Bacteria	COG5523@1,COG5523@2	NA|NA|NA	T	integral membrane protein
PAPOILPD_01254	748671.LCRIS_00258	4.3e-117	428.3	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TRNY@1239,3F431@33958,4HBKP@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01255	390333.Ldb0047	6.1e-82	310.1	Lactobacillaceae													Bacteria	1VHX0@1239,2E9ZR@1,33455@2,3F9XE@33958,4IHJ4@91061	NA|NA|NA	S	YcxB-like protein
PAPOILPD_01256	353496.LBU_0028	1.3e-70	272.3	Lactobacillaceae													Bacteria	1V6FK@1239,3F73Q@33958,4HKZD@91061,COG1959@1,COG1959@2	NA|NA|NA	K	Transcriptional regulator
PAPOILPD_01257	278197.PEPE_1768	2.7e-88	332.0	Lactobacillaceae	qorB		1.6.5.2	ko:K19267	ko00130,ko01110,map00130,map01110		R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000				Bacteria	1TT90@1239,3F4UU@33958,4HC1K@91061,COG0702@1,COG0702@2	NA|NA|NA	GM	NmrA-like family
PAPOILPD_01258	353496.LBU_0031	1.3e-27	128.3	Lactobacillaceae	dmpI	GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0044237	5.3.2.6	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R03966,R05389	RC01040,RC01355	ko00000,ko00001,ko00002,ko01000				Bacteria	1VKD5@1239,3F83T@33958,4HRBS@91061,COG1942@1,COG1942@2	NA|NA|NA	G	Belongs to the 4-oxalocrotonate tautomerase family
PAPOILPD_01260	1293597.BN147_01990	2.9e-129	468.0	Lactobacillaceae				ko:K07484					ko00000				Bacteria	1VZPC@1239,3FBX3@33958,4H9WS@91061,COG3316@1,COG3316@2	NA|NA|NA	L	Transposase and inactivated derivatives
PAPOILPD_01261	353496.LBU_1076	2.4e-156	558.1	Lactobacillaceae	yitT												Bacteria	1TRBT@1239,3F3PH@33958,4HBPR@91061,COG1284@1,COG1284@2	NA|NA|NA	S	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PAPOILPD_01263	353496.LBU_1074	6.3e-154	550.1	Lactobacillaceae	yqfL		2.7.11.33,2.7.4.28	ko:K09773					ko00000,ko01000				Bacteria	1TPG0@1239,3F3WK@33958,4HB0Q@91061,COG1806@1,COG1806@2	NA|NA|NA	F	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation
PAPOILPD_01264	1033837.WANG_0480	2e-22	110.9	Lactobacillaceae	rpsU	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02970	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEHU@1239,3F81Y@33958,4HNPV@91061,COG0828@1,COG0828@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bS21 family
PAPOILPD_01265	390333.Ldb1254	1.7e-168	598.6	Lactobacillaceae	phoH	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K06217					ko00000				Bacteria	1TP35@1239,3F4E7@33958,4HBD5@91061,COG1702@1,COG1702@2	NA|NA|NA	T	phosphate starvation-inducible protein PhoH
PAPOILPD_01266	353496.LBU_1071	3e-98	364.4	Lactobacillaceae	ybeY	GO:0000469,GO:0000478,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0016151,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030490,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043244,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141	2.6.99.2,3.5.4.5	ko:K01489,ko:K03474,ko:K03595,ko:K07042	ko00240,ko00750,ko00983,ko01100,map00240,map00750,map00983,map01100	M00124	R01878,R02485,R05838,R08221	RC00074,RC00514,RC01476	ko00000,ko00001,ko00002,ko01000,ko03009,ko03029				Bacteria	1V6BU@1239,3F516@33958,4HIIE@91061,COG0319@1,COG0319@2	NA|NA|NA	S	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PAPOILPD_01267	353496.LBU_1070	4.1e-74	283.9	Lactobacillaceae	cdd		3.5.4.5	ko:K01489	ko00240,ko00983,ko01100,map00240,map00983,map01100		R01878,R02485,R08221	RC00074,RC00514	ko00000,ko00001,ko01000				Bacteria	1V6IP@1239,3F7RM@33958,4HIJ3@91061,COG0295@1,COG0295@2	NA|NA|NA	F	This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis
PAPOILPD_01268	353496.LBU_1069	1.1e-167	595.9	Lactobacillaceae	era	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113		ko:K03595,ko:K06883					ko00000,ko03009,ko03029				Bacteria	1TP3R@1239,3F3WQ@33958,4H9WF@91061,COG1159@1,COG1159@2	NA|NA|NA	S	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PAPOILPD_01269	390333.Ldb1250	4.8e-134	483.8	Lactobacillaceae	recO	GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360		ko:K03584	ko03440,map03440				ko00000,ko00001,ko03400				Bacteria	1UZ19@1239,3F56P@33958,4HAHI@91061,COG1381@1,COG1381@2	NA|NA|NA	L	Involved in DNA repair and RecF pathway recombination
PAPOILPD_01270	353496.LBU_1067	3.9e-178	630.6	Lactobacillaceae	glyQ	GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016874,GO:0016875,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0140098,GO:0140101	6.1.1.14	ko:K01878,ko:K14164	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iAF1260.b3560,iAF987.Gmet_2942,iJO1366.b3560,iPC815.YPO4072,iY75_1357.Y75_RS19360	Bacteria	1TPW8@1239,3F3T8@33958,4HBCF@91061,COG0752@1,COG0752@2	NA|NA|NA	J	glycyl-tRNA synthetase alpha subunit
PAPOILPD_01271	353496.LBU_1066	0.0	1337.8	Lactobacillaceae	glyS	GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.14	ko:K01879,ko:K14164	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iAPECO1_1312.APECO1_2891,iE2348C_1286.E2348C_3810,iECABU_c1320.ECABU_c40010,iECED1_1282.ECED1_4242,iECH74115_1262.ECH74115_4934,iECNA114_1301.ECNA114_3710,iECOK1_1307.ECOK1_4005,iECP_1309.ECP_3661,iECS88_1305.ECS88_3976,iECSF_1327.ECSF_3393,iECSP_1301.ECSP_4554,iECs_1301.ECs4442,iG2583_1286.G2583_4300,iJN678.glyS,iUMN146_1321.UM146_17960,iUTI89_1310.UTI89_C4099,ic_1306.c4378	Bacteria	1TNZ7@1239,3F4G8@33958,4H9NT@91061,COG0751@1,COG0751@2	NA|NA|NA	J	Glycyl-tRNA synthetase beta subunit
PAPOILPD_01272	353496.LBU_1065	0.0	1192.6	Lactobacillaceae	dnaG			ko:K02316	ko03030,map03030				ko00000,ko00001,ko01000,ko03032				Bacteria	1TQ0X@1239,3F3N1@33958,4HAG2@91061,COG0358@1,COG0358@2	NA|NA|NA	L	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
PAPOILPD_01273	353496.LBU_1064	7.9e-197	693.0	Lactobacillaceae	sigA	GO:0000988,GO:0000990,GO:0001098,GO:0001101,GO:0001108,GO:0001666,GO:0002791,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009410,GO:0009415,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019899,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032879,GO:0032880,GO:0036293,GO:0040007,GO:0042221,GO:0043175,GO:0043254,GO:0044087,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051173,GO:0051223,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070063,GO:0070201,GO:0070482,GO:0071944,GO:0080090,GO:0090087,GO:0097159,GO:0140110,GO:1901363,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:2000112,GO:2000142,GO:2001141		ko:K03086,ko:K03087	ko02026,ko05111,map02026,map05111				ko00000,ko00001,ko03021				Bacteria	1TPD6@1239,3F4CF@33958,4HB1H@91061,COG0568@1,COG0568@2	NA|NA|NA	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
PAPOILPD_01274	353496.LBU_1063	3.9e-196	690.6	Lactobacillaceae	sigA	GO:0000988,GO:0000990,GO:0001098,GO:0001101,GO:0001108,GO:0001666,GO:0002791,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009410,GO:0009415,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019899,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032879,GO:0032880,GO:0036293,GO:0040007,GO:0042221,GO:0043175,GO:0043254,GO:0044087,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051173,GO:0051223,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070063,GO:0070201,GO:0070482,GO:0071944,GO:0080090,GO:0090087,GO:0097159,GO:0140110,GO:1901363,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:2000112,GO:2000142,GO:2001141		ko:K03086,ko:K03087	ko02026,ko05111,map02026,map05111				ko00000,ko00001,ko03021				Bacteria	1TPD6@1239,3F4CF@33958,4HB1H@91061,COG0568@1,COG0568@2	NA|NA|NA	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
PAPOILPD_01275	353496.LBU_1062	1.4e-196	692.2	Lactobacillaceae				ko:K03086					ko00000,ko03021				Bacteria	1TPD6@1239,3F9B5@33958,4HB1H@91061,COG0568@1,COG0568@2	NA|NA|NA	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PAPOILPD_01279	1293597.BN147_05020	1.2e-55	222.2	Lactobacillaceae				ko:K07497					ko00000				Bacteria	1TQQY@1239,3F59Y@33958,4HBHG@91061,COG2801@1,COG2801@2	NA|NA|NA	L	PFAM Integrase catalytic region
PAPOILPD_01280	353496.LBU_1319	1.4e-175	622.1	Lactobacillaceae	cbf			ko:K03698					ko00000,ko01000,ko03019				Bacteria	1TPIU@1239,3F4SF@33958,4HB1M@91061,COG3481@1,COG3481@2	NA|NA|NA	S	Metal dependent phosphohydrolases with conserved 'HD' motif.
PAPOILPD_01281	353496.LBU_1320	0.0	1341.3	Lactobacillaceae													Bacteria	1TQP3@1239,3F3PF@33958,4HBCA@91061,COG0419@1,COG0419@2,COG4717@1,COG4717@2	NA|NA|NA	L	AAA domain
PAPOILPD_01282	353496.LBU_1321	2.6e-222	777.7	Lactobacillaceae	yhaO			ko:K03547					ko00000,ko03400				Bacteria	1TWMI@1239,3F3PX@33958,4HCA0@91061,COG0420@1,COG0420@2	NA|NA|NA	L	Ser Thr phosphatase family protein
PAPOILPD_01283	353496.LBU_1322	6.4e-52	209.9	Lactobacillaceae	yheA												Bacteria	1VASS@1239,3F822@33958,4HKKC@91061,COG3679@1,COG3679@2	NA|NA|NA	S	Belongs to the UPF0342 family
PAPOILPD_01284	353496.LBU_1323	0.0	1261.5	Lactobacillaceae	pbp2A		2.4.1.129,3.4.16.4	ko:K05365,ko:K05366,ko:K12555,ko:K21464	ko00550,ko01100,ko01501,map00550,map01100,map01501		R04519	RC00005,RC00049	ko00000,ko00001,ko01000,ko01003,ko01011		GT51		Bacteria	1TPM5@1239,3F49Q@33958,4H9SA@91061,COG0744@1,COG0744@2	NA|NA|NA	M	penicillin-binding protein
PAPOILPD_01285	353496.LBU_1324	9.3e-158	562.8	Lactobacillaceae	rluA	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.23	ko:K06180					ko00000,ko01000,ko03009				Bacteria	1TSM6@1239,3F50K@33958,4HA7M@91061,COG0564@1,COG0564@2	NA|NA|NA	J	Responsible for synthesis of pseudouridine from uracil
PAPOILPD_01286	353496.LBU_1325	4.3e-169	600.5	Lactobacillaceae	fba		4.1.2.13,4.1.2.29	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167,M00344,M00345	R01068,R01070,R01829,R02568,R05378	RC00438,RC00439,RC00603,RC00604,RC00721	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQ01@1239,3F4EF@33958,4H9ZU@91061,COG0191@1,COG0191@2	NA|NA|NA	G	Fructose-1,6-bisphosphate aldolase, class II
PAPOILPD_01287	353496.LBU_1326	6e-94	350.5	Lactobacillaceae													Bacteria	1V4KP@1239,3F6PH@33958,4HIBF@91061,COG1376@1,COG1376@2	NA|NA|NA	M	ErfK YbiS YcfS YnhG
PAPOILPD_01288	1121865.OMW_01434	4.8e-17	94.0	Firmicutes			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	1VBCZ@1239,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
PAPOILPD_01289	557436.Lreu_1346	6.7e-109	400.6	Lactobacillaceae	gtfC	GO:0005575,GO:0005576	2.4.1.5	ko:K00689,ko:K20276	ko00500,ko02020,ko02024,map00500,map02020,map02024		R02120,R06066	RC00028	ko00000,ko00001,ko01000		GH13		Bacteria	1VQXK@1239,3F93W@33958,4HEIA@91061,COG0366@1,COG0366@2,COG5263@1,COG5263@2	NA|NA|NA	G	Glycosyl hydrolase family 70
PAPOILPD_01290	557436.Lreu_1346	2.7e-262	912.1	Lactobacillaceae	gtfC	GO:0005575,GO:0005576	2.4.1.5	ko:K00689,ko:K20276	ko00500,ko02020,ko02024,map00500,map02020,map02024		R02120,R06066	RC00028	ko00000,ko00001,ko01000		GH13		Bacteria	1VQXK@1239,3F93W@33958,4HEIA@91061,COG0366@1,COG0366@2,COG5263@1,COG5263@2	NA|NA|NA	G	Glycosyl hydrolase family 70
PAPOILPD_01291	575605.ACQN01000054_gene1481	1.2e-33	149.4	Lactobacillaceae													Bacteria	1UZVA@1239,3F4KP@33958,4HH09@91061,COG3039@1,COG3039@2	NA|NA|NA	L	An automated process has identified a potential problem with this gene model
PAPOILPD_01292	575605.ACQN01000054_gene1481	5.5e-43	180.6	Lactobacillaceae													Bacteria	1UZVA@1239,3F4KP@33958,4HH09@91061,COG3039@1,COG3039@2	NA|NA|NA	L	An automated process has identified a potential problem with this gene model
PAPOILPD_01293	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01294	353496.LBU_0276	7e-37	159.5	Lactobacillaceae	veg												Bacteria	1VEQM@1239,3F7D3@33958,4HKF8@91061,COG4466@1,COG4466@2	NA|NA|NA	S	Biofilm formation stimulator VEG
PAPOILPD_01295	390333.Ldb0345	8.8e-159	566.2	Lactobacillaceae	ksgA	GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.182	ko:K02528,ko:K15256			R10716	RC00003,RC03257	ko00000,ko01000,ko03009,ko03016				Bacteria	1TP9W@1239,3F3VC@33958,4HA4R@91061,COG0030@1,COG0030@2	NA|NA|NA	J	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
PAPOILPD_01296	390333.Ldb0344	6.8e-96	356.7	Lactobacillaceae	rnmV	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043822,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360	3.1.26.8	ko:K05985,ko:K07476					ko00000,ko01000				Bacteria	1V3K3@1239,3F64F@33958,4HH5Y@91061,COG1658@1,COG1658@2	NA|NA|NA	J	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
PAPOILPD_01297	353496.LBU_0273	1.8e-147	528.5	Lactobacillaceae	tatD	GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575		ko:K03424					ko00000,ko01000				Bacteria	1TNY1@1239,3F3N2@33958,4HA74@91061,COG0084@1,COG0084@2	NA|NA|NA	L	hydrolase, TatD family
PAPOILPD_01298	353496.LBU_0272	0.0	1297.0	Lactobacillaceae	metG	GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TPA1@1239,3F3XR@33958,4H9VC@91061,COG0143@1,COG0143@2	NA|NA|NA	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PAPOILPD_01299	353496.LBU_0271	0.0	1642.5	Lactobacillaceae	mgtA	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0099131,GO:0099132	3.6.3.2	ko:K01531					ko00000,ko01000	3.A.3.4		iSF_1195.SF4248	Bacteria	1TPF5@1239,3F4E0@33958,4HBQJ@91061,COG0474@1,COG0474@2	NA|NA|NA	P	COG0474 Cation transport ATPase
PAPOILPD_01300	390333.Ldb0340	1.2e-101	375.9	Lactobacillaceae				ko:K06872,ko:K07507					ko00000,ko02000	9.B.20			Bacteria	1V5YF@1239,3F5HD@33958,4HJVB@91061,COG1512@1,COG1512@2	NA|NA|NA	S	TPM domain
PAPOILPD_01301	353496.LBU_0270	8.3e-87	326.2	Lactobacillaceae	comEB		3.5.4.12	ko:K01493	ko00240,ko01100,map00240,map01100	M00429	R01663	RC00074	ko00000,ko00001,ko00002,ko01000,ko02044				Bacteria	1V3PU@1239,3FC8D@33958,4HEJU@91061,COG2131@1,COG2131@2	NA|NA|NA	F	MafB19-like deaminase
PAPOILPD_01302	353496.LBU_0269	2.8e-193	681.0	Lactobacillaceae	trpS	GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.2	ko:K01867	ko00970,map00970	M00359,M00360	R03664	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TPY7@1239,3F3V6@33958,4HA1K@91061,COG0180@1,COG0180@2	NA|NA|NA	J	Belongs to the class-I aminoacyl-tRNA synthetase family
PAPOILPD_01304	353496.LBU_0268	4.3e-118	430.6	Lactobacillaceae													Bacteria	1UG72@1239,2BFBV@1,3294Z@2,3F5KI@33958,4IF41@91061	NA|NA|NA		
PAPOILPD_01305	353496.LBU_0266	4.2e-127	460.7	Lactobacillaceae				ko:K01990,ko:K21397		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1V5QQ@1239,3F4PA@33958,4HGBY@91061,COG1131@1,COG1131@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
PAPOILPD_01306	353496.LBU_0265	5e-137	493.8	Lactobacillaceae				ko:K01992		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1V4CN@1239,3F40V@33958,4I8Z0@91061,COG0842@1,COG0842@2	NA|NA|NA	V	ABC-2 type transporter
PAPOILPD_01307	353496.LBU_1289	9.3e-289	998.8	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01308	1293597.BN147_10190	2.4e-113	414.8	Lactobacillaceae	guaB2												Bacteria	1TQNJ@1239,3F67A@33958,4HPRA@91061,COG2452@1,COG2452@2	NA|NA|NA	L	Resolvase, N terminal domain
PAPOILPD_01309	353496.LBU_1636	3.2e-67	261.2	Lactobacillaceae				ko:K21471					ko00000,ko01000,ko01002,ko01011				Bacteria	1V9ZW@1239,3F6DD@33958,4HH84@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC/P60 family
PAPOILPD_01310	390333.Ldb2015	2.4e-107	395.2	Lactobacillaceae													Bacteria	1V5H7@1239,3FBE5@33958,4HMYU@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC/P60 family
PAPOILPD_01311	353496.LBU_1634	9.4e-87	326.6	Lactobacillaceae													Bacteria	1VG0Z@1239,3F50V@33958,4HBE9@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC P60 family protein
PAPOILPD_01312	1293597.BN147_05250	8.8e-91	340.1	Lactobacillaceae													Bacteria	1VG0Z@1239,3F50V@33958,4HBE9@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC P60 family protein
PAPOILPD_01313	390333.Ldb2013	6.6e-118	430.3	Lactobacillaceae													Bacteria	1VG0Z@1239,3F50V@33958,4HBE9@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC P60 family protein
PAPOILPD_01314	353496.LBU_1631	2.3e-224	784.6	Lactobacillaceae	hflX			ko:K03665					ko00000,ko03009				Bacteria	1TNZB@1239,3F4B2@33958,4HACA@91061,COG2262@1,COG2262@2	NA|NA|NA	S	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PAPOILPD_01315	353496.LBU_1630	7.9e-175	619.8	Lactobacillaceae	brpA												Bacteria	1TR1B@1239,3F3MQ@33958,4HA09@91061,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-like function transcriptional attenuator common domain protein
PAPOILPD_01316	390333.Ldb2010	4.6e-107	394.4	Lactobacillaceae	epsB												Bacteria	1UZCR@1239,3F4M5@33958,4HE26@91061,COG3944@1,COG3944@2	NA|NA|NA	M	biosynthesis protein
PAPOILPD_01317	353496.LBU_1628	4.9e-105	387.5	Lactobacillaceae	ywqD		2.7.10.1	ko:K08252,ko:K16554	ko05111,map05111				ko00000,ko00001,ko01000,ko02000	8.A.3.1			Bacteria	1TS4R@1239,3F4BM@33958,4HCEN@91061,COG0489@1,COG0489@2	NA|NA|NA	D	Capsular exopolysaccharide family
PAPOILPD_01318	353496.LBU_1627	1.7e-145	521.9	Lactobacillaceae	ywqE		3.1.3.48	ko:K01104					ko00000,ko01000				Bacteria	1TQ1T@1239,3F3RT@33958,4HDZR@91061,COG4464@1,COG4464@2	NA|NA|NA	GM	PHP domain protein
PAPOILPD_01319	390333.Ldb2007	1.7e-122	445.3	Lactobacillaceae	rfbP												Bacteria	1TP7M@1239,3FB5K@33958,4HHDH@91061,COG2148@1,COG2148@2	NA|NA|NA	M	Bacterial sugar transferase
PAPOILPD_01320	390333.Ldb2006	1.2e-85	322.4	Lactobacillaceae	cpsF												Bacteria	1V57Q@1239,3F5GA@33958,4IPPX@91061,COG0707@1,COG0707@2	NA|NA|NA	M	Oligosaccharide biosynthesis protein Alg14 like
PAPOILPD_01321	390333.Ldb2005	2.2e-82	311.6	Lactobacillaceae	pssE												Bacteria	1VCGX@1239,3F5WF@33958,4HMKJ@91061,COG5017@1,COG5017@2	NA|NA|NA	S	Glycosyltransferase family 28 C-terminal domain
PAPOILPD_01322	97137.C821_00543	3.1e-101	374.8	Lactobacillaceae													Bacteria	1V3YG@1239,3FB9N@33958,4HG22@91061,COG3774@1,COG3774@2	NA|NA|NA	M	Glycosyltransferase sugar-binding region containing DXD motif
PAPOILPD_01323	907931.AEIZ01000007_gene673	1.3e-21	110.9	Bacilli													Bacteria	1W221@1239,2C9BP@1,2ZUX0@2,4I14H@91061	NA|NA|NA		
PAPOILPD_01324	405566.lhv_0620	4.4e-27	127.5	Lactobacillaceae													Bacteria	1UZVA@1239,3F4KP@33958,4HH09@91061,COG3039@1,COG3039@2	NA|NA|NA	L	An automated process has identified a potential problem with this gene model
PAPOILPD_01326	1123500.ATUU01000004_gene1099	1.5e-87	329.7	Leuconostocaceae			2.7.8.12	ko:K09809,ko:K19354					ko00000,ko01000,ko01003,ko01005		GT2		Bacteria	1V0TF@1239,4AZ4I@81850,4IST1@91061,COG1215@1,COG1215@2	NA|NA|NA	M	Glycosyltransferase like family 2
PAPOILPD_01327	390333.Ldb1194	1.3e-195	688.7	Lactobacillaceae	asnA	GO:0003674,GO:0003824,GO:0004071,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	6.3.1.1	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230		R00483	RC00010	ko00000,ko00001,ko01000			iAPECO1_1312.APECO1_2719,iECOK1_1307.ECOK1_4193,iECS88_1305.ECS88_4166,iUMN146_1321.UM146_18910,iUTI89_1310.UTI89_C4299	Bacteria	1TP28@1239,3F40A@33958,4HAEC@91061,COG2502@1,COG2502@2	NA|NA|NA	F	aspartate--ammonia ligase
PAPOILPD_01328	390333.Ldb1193	1.3e-100	372.5	Lactobacillaceae	dedA		3.1.3.1	ko:K01077	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147				Bacteria	1TS2R@1239,3F5F9@33958,4HA51@91061,COG0586@1,COG0586@2	NA|NA|NA	S	SNARE associated Golgi protein
PAPOILPD_01329	353496.LBU_1017	2e-83	315.1	Lactobacillaceae													Bacteria	1U7KI@1239,29Q6U@1,30B5U@2,3F9VD@33958,4IHHK@91061	NA|NA|NA		
PAPOILPD_01330	353496.LBU_1016	1.5e-67	262.3	Lactobacillaceae				ko:K03830					ko00000,ko01000				Bacteria	1V6S5@1239,3F6HM@33958,4HJJY@91061,COG0454@1,COG0456@2	NA|NA|NA	K	GNAT family
PAPOILPD_01331	390333.Ldb1189	0.0	3274.6	Lactobacillaceae	prtS		3.4.21.110,3.4.21.96	ko:K01361,ko:K08652,ko:K17734					ko00000,ko01000,ko01002,ko03110				Bacteria	1TPH1@1239,3F3M5@33958,4HBQH@91061,COG1404@1,COG1404@2	NA|NA|NA	O	Belongs to the peptidase S8 family
PAPOILPD_01332	1423790.BN53_01690	8.4e-257	892.5	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01333	353496.LBU_1274	4.5e-58	230.3	Lactobacillaceae	yodB												Bacteria	1VBI7@1239,3F7FK@33958,4HKBR@91061,COG1733@1,COG1733@2	NA|NA|NA	K	Transcriptional regulator, HxlR family
PAPOILPD_01334	353496.LBU_1273	1.5e-197	695.3	Lactobacillaceae	pheS	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.20	ko:K01889	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TPFW@1239,3F4NT@33958,4HAVN@91061,COG0016@1,COG0016@2	NA|NA|NA	J	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PAPOILPD_01335	353496.LBU_1272	0.0	1574.3	Lactobacillaceae	pheT	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iG2583_1286.G2583_2160,iPC815.YPO2428	Bacteria	1TP98@1239,3F3V3@33958,4HAQ9@91061,COG0072@1,COG0072@2	NA|NA|NA	J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PAPOILPD_01336	353496.LBU_1271	3.2e-78	297.7	Lactobacillaceae	greA	GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576		ko:K03624					ko00000,ko03021				Bacteria	1V44S@1239,3F4ZF@33958,4HGZU@91061,COG0782@1,COG0782@2	NA|NA|NA	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
PAPOILPD_01338	353496.LBU_0263	8.6e-39	166.0	Lactobacillaceae													Bacteria	1U6US@1239,2C7JY@1,2ZYK0@2,3F8IM@33958,4IGNN@91061	NA|NA|NA	S	Enterocin A Immunity
PAPOILPD_01339	257314.LJ_0766	7.7e-74	283.9	Lactobacillaceae				ko:K07707	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko02022				Bacteria	1V392@1239,3F61S@33958,4HHAI@91061,COG3279@1,COG3279@2	NA|NA|NA	K	LytTr DNA-binding domain
PAPOILPD_01340	1423754.BALY01000020_gene737	7.1e-88	331.3	Lactobacillaceae			2.7.13.3	ko:K07706	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1V1ET@1239,3F71I@33958,4HGNA@91061,COG3290@1,COG3290@2	NA|NA|NA	T	GHKL domain
PAPOILPD_01342	390333.Ldb0325	9.4e-141	506.1	Lactobacillaceae			2.7.7.1,3.6.1.55,3.6.1.67	ko:K03207,ko:K03574,ko:K13522,ko:K19965	ko00760,ko00790,ko01100,map00760,map00790,map01100	M00126	R00137,R03005,R04638	RC00002	ko00000,ko00001,ko00002,ko01000,ko03400				Bacteria	1UZ4E@1239,3FBCZ@33958,4IPMJ@91061,COG1051@1,COG1051@2,COG4111@1,COG4111@2	NA|NA|NA	F	NUDIX domain
PAPOILPD_01343	390333.Ldb0324	9.7e-37	159.1	Bacteria													Bacteria	COG3326@1,COG3326@2	NA|NA|NA	L	Membrane
PAPOILPD_01344	390333.Ldb0323	3.9e-111	407.9	Lactobacillaceae													Bacteria	1V3YR@1239,2BVD0@1,32QT1@2,3F67T@33958,4HK85@91061	NA|NA|NA		
PAPOILPD_01345	353496.LBU_0258	7.1e-106	389.8	Lactobacillaceae	pncA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006208,GO:0006212,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0017144,GO:0019860,GO:0034641,GO:0042737,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575		ko:K16788					ko00000,ko02000	2.A.88.5		iSB619.SA_RS09955	Bacteria	1V1CY@1239,3F41F@33958,4HFRS@91061,COG1335@1,COG1335@2	NA|NA|NA	Q	Isochorismatase family
PAPOILPD_01346	353496.LBU_0255	8.3e-268	929.1	Lactobacillaceae	pncB	GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.4.21	ko:K00763	ko00760,ko01100,map00760,map01100		R01724	RC00033	ko00000,ko00001,ko01000				Bacteria	1TPDW@1239,3F3K7@33958,4HAI4@91061,COG1488@1,COG1488@2	NA|NA|NA	F	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PAPOILPD_01347	353496.LBU_0254	9.1e-78	296.2	Lactobacillaceae	mscL	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066		ko:K03282					ko00000,ko02000	1.A.22.1			Bacteria	1VA14@1239,3F6YZ@33958,4HKIA@91061,COG1970@1,COG1970@2	NA|NA|NA	M	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
PAPOILPD_01348	353496.LBU_0253	4.8e-92	344.4	Lactobacillaceae													Bacteria	1UYC4@1239,3F5R1@33958,4HGTM@91061,COG0561@1,COG0561@2	NA|NA|NA	S	Sucrose-6F-phosphate phosphohydrolase
PAPOILPD_01349	353496.LBU_0251	3.6e-185	654.1	Lactobacillaceae	ansA		3.5.1.1	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110		R00485	RC00010,RC02798	ko00000,ko00001,ko01000				Bacteria	1TPP9@1239,3FCC6@33958,4HD98@91061,COG0252@1,COG0252@2	NA|NA|NA	EJ	L-asparaginase, type I
PAPOILPD_01350	390333.Ldb0314	2.4e-72	278.1	Bacteria													Bacteria	COG1846@1,COG1846@2	NA|NA|NA	K	DNA-binding transcription factor activity
PAPOILPD_01351	353496.LBU_0248	1.9e-72	278.5	Lactobacillaceae	ywhH			ko:K03976					ko00000,ko01000,ko03016				Bacteria	1V3MU@1239,3F6VY@33958,4HI9H@91061,COG2606@1,COG2606@2	NA|NA|NA	S	Aminoacyl-tRNA editing domain
PAPOILPD_01352	390333.Ldb0311	9.5e-172	609.4	Lactobacillaceae	mmuM	GO:0003674,GO:0003824,GO:0005488,GO:0006575,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008270,GO:0008757,GO:0008898,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0033477,GO:0033554,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:1901564	1.5.1.20,2.1.1.10	ko:K00297,ko:K00547	ko00270,ko00670,ko00720,ko01100,ko01110,ko01120,ko01200,ko01523,map00270,map00670,map00720,map01100,map01110,map01120,map01200,map01523	M00377	R00650,R01224,R07168	RC00003,RC00035,RC00081	ko00000,ko00001,ko00002,ko01000				Bacteria	1UHQ5@1239,3F4UT@33958,4HAS6@91061,COG2040@1,COG2040@2	NA|NA|NA	H	homocysteine S-methyltransferase
PAPOILPD_01353	1293597.BN147_04020	2.2e-233	814.7	Lactobacillaceae	mmuP	GO:0000096,GO:0000097,GO:0000100,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006810,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0015806,GO:0016020,GO:0016053,GO:0019752,GO:0022857,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072337,GO:0072348,GO:0072349,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901682		ko:K02205,ko:K03293,ko:K16235,ko:K16236					ko00000,ko02000	2.A.3.1,2.A.3.1.10			Bacteria	1UHNR@1239,3F4BG@33958,4HUT7@91061,COG0833@1,COG0833@2	NA|NA|NA	E	amino acid
PAPOILPD_01354	353496.LBU_0245	6.8e-165	586.6	Lactobacillaceae			3.6.4.12	ko:K03655	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	1TSPK@1239,3F5RT@33958,4HF0C@91061,COG2865@1,COG2865@2	NA|NA|NA	K	Putative ATP-dependent DNA helicase recG C-terminal
PAPOILPD_01355	1293597.BN147_02730	4.2e-74	284.6	Lactobacillaceae	prpH		3.1.3.16	ko:K01090,ko:K20074					ko00000,ko01000,ko01009				Bacteria	1UV6J@1239,3F8W7@33958,4IGX2@91061,COG0789@1,COG0789@2	NA|NA|NA	K	3.5.2 Transcription regulation
PAPOILPD_01356	353496.LBU_0913	1.4e-200	705.7	Lactobacillaceae													Bacteria	1TPFM@1239,3F3KX@33958,4HEHY@91061,COG0534@1,COG0534@2	NA|NA|NA	V	MATE efflux family protein
PAPOILPD_01357	353496.LBU_0911	4.2e-32	144.8	Bacteria													Bacteria	COG2199@1,COG2199@2	NA|NA|NA	T	diguanylate cyclase activity
PAPOILPD_01358	390333.Ldb1070	3e-209	734.2	Lactobacillaceae	carA	GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0040007,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494	6.3.5.5	ko:K01955,ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv1383	Bacteria	1TQ8N@1239,3F43R@33958,4H9Z0@91061,COG0505@1,COG0505@2	NA|NA|NA	F	Carbamoyl-phosphate synthetase glutamine chain
PAPOILPD_01359	1410658.JHWI01000028_gene1796	0.0	1888.6	Erysipelotrichia	carB		6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPID@1239,3VPAY@526524,COG0458@1,COG0458@2	NA|NA|NA	F	Psort location Cytoplasmic, score 8.87
PAPOILPD_01360	353496.LBU_0907	2.4e-41	174.5	Bacteria				ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	COG1132@1,COG1132@2	NA|NA|NA	V	(ABC) transporter
PAPOILPD_01361	353496.LBU_0906	4.1e-86	324.3	Lactobacillaceae	ybaJ												Bacteria	1TR3E@1239,3F9RX@33958,4HA5G@91061,COG0500@1,COG2226@2	NA|NA|NA	Q	Hypothetical methyltransferase
PAPOILPD_01362	390333.Ldb1060	2.9e-277	960.7	Lactobacillaceae	oppA2			ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F4TA@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	Bacterial extracellular solute-binding proteins, family 5 Middle
PAPOILPD_01363	1293597.BN147_03860	1.1e-153	549.3	Lactobacillaceae	pepL		3.4.11.5	ko:K01259	ko00330,map00330		R00135		ko00000,ko00001,ko01000,ko01002				Bacteria	1U46W@1239,3F5ZW@33958,4IDY6@91061,COG2267@1,COG2267@2	NA|NA|NA	E	Releases the N-terminal proline from various substrates
PAPOILPD_01364	353496.LBU_0903	1.8e-122	445.3	Lactobacillaceae	WQ51_05710												Bacteria	1TPN2@1239,3F4J7@33958,4HHYG@91061,COG2013@1,COG2013@2	NA|NA|NA	S	Mitochondrial biogenesis AIM24
PAPOILPD_01365	1410674.JNKU01000066_gene557	2.8e-73	281.6	Lactobacillaceae													Bacteria	1UXY8@1239,3F4JB@33958,4HFD9@91061,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
PAPOILPD_01366	353496.LBU_0971	1.7e-180	638.6	Bacilli	yacH												Bacteria	1TPW9@1239,4HCS1@91061,COG1196@1,COG1196@2,COG4913@1,COG4913@2	NA|NA|NA	D	Putative exonuclease SbcCD, C subunit
PAPOILPD_01367	353496.LBU_1289	1.7e-51	208.4	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01368	390333.Ldb1810	1.9e-245	854.7	Lactobacillaceae	nhaC			ko:K03315					ko00000,ko02000	2.A.35			Bacteria	1TQ3B@1239,3F3VX@33958,4HA18@91061,COG1757@1,COG1757@2	NA|NA|NA	C	Na H antiporter NhaC
PAPOILPD_01370	353496.LBU_1522	3.4e-178	630.9	Lactobacillaceae	manL		2.7.1.191	ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	M00276	R02630	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.6.1			Bacteria	1TQJ4@1239,3FC7R@33958,4HTTA@91061,COG2893@1,COG2893@2,COG3444@1,COG3444@2	NA|NA|NA	G	PTS system sorbose subfamily IIB component
PAPOILPD_01371	353496.LBU_1521	1.4e-134	485.7	Lactobacillaceae	manY			ko:K02795,ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	M00276	R02630	RC00017,RC03206	ko00000,ko00001,ko00002,ko02000	4.A.6.1			Bacteria	1TPKK@1239,3F3V5@33958,4H9QI@91061,COG3715@1,COG3715@2	NA|NA|NA	G	PTS system
PAPOILPD_01372	390333.Ldb1799	2.5e-161	574.7	Lactobacillaceae	manN			ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	M00276	R02630	RC00017,RC03206	ko00000,ko00001,ko00002,ko02000	4.A.6.1			Bacteria	1TQA3@1239,3F3KR@33958,4HA3K@91061,COG3716@1,COG3716@2	NA|NA|NA	G	system, mannose fructose sorbose family IID component
PAPOILPD_01373	353496.LBU_1519	4.7e-63	246.9	Lactobacillaceae	manO												Bacteria	1V6KV@1239,3FB56@33958,4HX8Z@91061,COG4687@1,COG4687@2	NA|NA|NA	S	Domain of unknown function (DUF956)
PAPOILPD_01375	390333.Ldb1796	2e-242	844.7	Lactobacillaceae	cycA	GO:0001761,GO:0001762,GO:0003333,GO:0003674,GO:0005215,GO:0005326,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015180,GO:0015187,GO:0015238,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015808,GO:0015816,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0022858,GO:0022889,GO:0032328,GO:0032329,GO:0034220,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0042940,GO:0042941,GO:0042942,GO:0042943,GO:0042944,GO:0042945,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903825,GO:1905039		ko:K03293,ko:K11737					ko00000,ko02000	2.A.3.1,2.A.3.1.7		iECO111_1330.ECO111_5093,iECO26_1355.ECO26_5376,iEcHS_1320.EcHS_A4458,iSbBS512_1146.SbBS512_E4749,iYL1228.KPN_04601	Bacteria	1TP97@1239,3F3YD@33958,4H9QX@91061,COG1113@1,COG1113@2	NA|NA|NA	E	Amino acid permease
PAPOILPD_01376	353496.LBU_1516	7.1e-158	563.1	Lactobacillaceae			3.5.2.6	ko:K17836,ko:K21471	ko00311,ko01130,ko01501,map00311,map01130,map01501	M00627,M00628	R06363	RC01499	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504				Bacteria	1TSZ0@1239,3F5GI@33958,4HBUM@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC/P60 family
PAPOILPD_01377	353496.LBU_1515	2.2e-187	661.4	Lactobacillaceae	galE		5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQ7N@1239,3F3YF@33958,4H9U5@91061,COG1087@1,COG1087@2	NA|NA|NA	M	Belongs to the NAD(P)-dependent epimerase dehydratase family
PAPOILPD_01378	353496.LBU_1514	0.0	2052.3	Lactobacillaceae	recQ1												Bacteria	1TQ62@1239,3F6WE@33958,4HAJ1@91061,COG1061@1,COG1061@2,COG3886@1,COG3886@2	NA|NA|NA	L	Helicase conserved C-terminal domain
PAPOILPD_01379	353496.LBU_1513	7e-47	193.0	Lactobacillaceae													Bacteria	1U8BB@1239,2BSKC@1,32MNX@2,3FASS@33958,4II9B@91061	NA|NA|NA		
PAPOILPD_01380	1293597.BN147_01920	2e-269	934.5	Lactobacillaceae				ko:K20265	ko02024,map02024				ko00000,ko00001,ko02000	2.A.3.7.1,2.A.3.7.3			Bacteria	1VTQI@1239,3FBET@33958,4HU7Y@91061,COG0531@1,COG0531@2	NA|NA|NA	E	amino acid
PAPOILPD_01381	353496.LBU_1259	7.1e-62	243.0	Lactobacillaceae													Bacteria	1U6UG@1239,29PNX@1,30AM4@2,3F8I6@33958,4IGNA@91061	NA|NA|NA	S	Domain of unknown function DUF1828
PAPOILPD_01382	353496.LBU_1260	1.1e-217	762.3	Lactobacillaceae													Bacteria	1TQHD@1239,3F43Q@33958,4HX8J@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_01383	353496.LBU_1261	2.3e-256	891.0	Lactobacillaceae	glnA		6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727		R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147				Bacteria	1TNZA@1239,3F41A@33958,4HACE@91061,COG0174@1,COG0174@2	NA|NA|NA	E	glutamine synthetase
PAPOILPD_01384	1293597.BN147_01900	5.3e-218	763.5	Lactobacillaceae	ynbB	GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0016740,GO:0016765,GO:0016829,GO:0016846	4.4.1.1	ko:K01758	ko00260,ko00270,ko00450,ko01100,ko01130,ko01230,map00260,map00270,map00450,map01100,map01130,map01230	M00338	R00782,R01001,R02408,R04770,R04930,R09366	RC00056,RC00069,RC00348,RC00382,RC00710,RC01209,RC01210,RC01245,RC02303	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1TQ88@1239,3F3PU@33958,4HAF5@91061,COG4100@1,COG4100@2	NA|NA|NA	P	aluminum resistance
PAPOILPD_01385	390333.Ldb1476	8.5e-165	586.3	Lactobacillaceae	miaA	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.5.1.75	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110		R01122	RC02820	ko00000,ko00001,ko01000,ko01006,ko03016				Bacteria	1TPSC@1239,3F3XS@33958,4HAVW@91061,COG0324@1,COG0324@2	NA|NA|NA	F	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PAPOILPD_01386	353496.LBU_1265	3.8e-69	267.3	Lactobacillaceae	yqhL												Bacteria	1VAI7@1239,3F67E@33958,4HKCE@91061,COG0607@1,COG0607@2	NA|NA|NA	P	Rhodanese-like protein
PAPOILPD_01387	353496.LBU_1266	2.5e-33	147.5	Lactobacillaceae	yqgQ												Bacteria	1VK83@1239,3F83I@33958,4HRG2@91061,COG4483@1,COG4483@2	NA|NA|NA	S	Bacterial protein of unknown function (DUF910)
PAPOILPD_01388	353496.LBU_1267	1.7e-114	418.7	Lactobacillaceae	gluP		3.4.21.105	ko:K19225					ko00000,ko01000,ko01002				Bacteria	1TQXT@1239,3FC8V@33958,4HCDF@91061,COG0705@1,COG0705@2	NA|NA|NA	S	Rhomboid family
PAPOILPD_01389	353496.LBU_1268	4.7e-105	387.1	Lactobacillaceae	ygfA	GO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019752,GO:0022611,GO:0030272,GO:0032502,GO:0034641,GO:0035999,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046653,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.3.2	ko:K01934	ko00670,ko01100,map00670,map01100		R02301	RC00183	ko00000,ko00001,ko01000			iECABU_c1320.ECABU_c31940,iECOK1_1307.ECOK1_3298,iECSF_1327.ECSF_2705,iUTI89_1310.UTI89_C3298	Bacteria	1VA91@1239,3FC8W@33958,4HKQI@91061,COG0212@1,COG0212@2	NA|NA|NA	H	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PAPOILPD_01390	390333.Ldb1482	7.2e-21	105.5	Lactobacillaceae	rpmG			ko:K02913	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VEJ4@1239,3F828@33958,4HNIM@91061,COG0267@1,COG0267@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL33 family
PAPOILPD_01391	353496.LBU_1269	0.0	1327.8	Lactobacillaceae	pbp2b		3.4.16.4	ko:K00687,ko:K05515,ko:K12553,ko:K21465	ko00550,ko01100,ko01501,map00550,map01100,map01501				ko00000,ko00001,ko01000,ko01011				Bacteria	1TQHY@1239,3F3KH@33958,4HAFX@91061,COG0768@1,COG0768@2	NA|NA|NA	M	Penicillin-binding Protein
PAPOILPD_01392	353496.LBU_1270	0.0	1636.3	Lactobacillaceae													Bacteria	1TRR1@1239,3F49G@33958,4HBW6@91061,COG4485@1,COG4485@2	NA|NA|NA	S	membrane
PAPOILPD_01393	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01394	390333.Ldb0299	2.8e-28	130.6	Firmicutes													Bacteria	1VBP1@1239,2CM8T@1,32SE0@2	NA|NA|NA	S	HicA toxin of bacterial toxin-antitoxin,
PAPOILPD_01395	353496.LBU_0234	1.2e-299	1035.0	Lactobacillaceae	guaA	GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.3.1.128,6.3.5.2	ko:K01951,ko:K03790	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002,ko03009			iLJ478.TM1820	Bacteria	1TPG8@1239,3F3NV@33958,4HA7Q@91061,COG0519@1,COG0519@2	NA|NA|NA	F	Catalyzes the synthesis of GMP from XMP
PAPOILPD_01396	1293597.BN147_09040	2.8e-205	721.1	Lactobacillaceae	guaB	GO:0003674,GO:0003824,GO:0003938,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	1.1.1.205	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	M00050	R01130,R08240	RC00143,RC02207	ko00000,ko00001,ko00002,ko01000,ko04147			iAPECO1_1312.APECO1_4018,iECABU_c1320.ECABU_c28100,iECP_1309.ECP_2510,iECSF_1327.ECSF_2349,iUTI89_1310.UTI89_C2826,ic_1306.c3027	Bacteria	1TNZ1@1239,3F3XN@33958,4H9V3@91061,COG0516@1,COG0516@2	NA|NA|NA	F	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
PAPOILPD_01397	353496.LBU_0232	5.6e-98	363.6	Lactobacillaceae	xpt	GO:0003674,GO:0003824,GO:0006139,GO:0006166,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0043094,GO:0043101,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046128,GO:0046129,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.2.22,2.4.2.7	ko:K00759,ko:K03816,ko:K09685	ko00230,ko01100,ko01110,map00230,map01100,map01110		R00190,R01229,R02142,R04378	RC00063,RC00122	ko00000,ko00001,ko01000,ko03000,ko04147			iYO844.BSU22070	Bacteria	1V1DU@1239,3F49S@33958,4HFNW@91061,COG0503@1,COG0503@2	NA|NA|NA	F	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
PAPOILPD_01398	353496.LBU_0231	1.3e-224	785.4	Lactobacillaceae	pbuX	GO:0003674,GO:0005215,GO:0005345,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006863,GO:0008150,GO:0015205,GO:0015851,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0042906,GO:0042907,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:1904823		ko:K02824,ko:K03458,ko:K16169,ko:K16170					ko00000,ko02000	2.A.40,2.A.40.1.1,2.A.40.1.2,2.A.40.3.1,2.A.40.3.2		iSB619.SA_RS02140	Bacteria	1TNZZ@1239,3F3Y7@33958,4HBAM@91061,COG2233@1,COG2233@2	NA|NA|NA	F	xanthine permease
PAPOILPD_01399	390333.Ldb0294	1.8e-38	164.9	Lactobacillaceae													Bacteria	1VKJ5@1239,2EIVY@1,33CM8@2,3F7QM@33958,4HRQ2@91061	NA|NA|NA		
PAPOILPD_01400	353496.LBU_0229	2.7e-249	867.5	Lactobacillaceae	uvrX		2.7.7.7	ko:K02346,ko:K03502,ko:K14161					ko00000,ko01000,ko03400				Bacteria	1TP42@1239,3F3WN@33958,4HA1P@91061,COG0389@1,COG0389@2	NA|NA|NA	L	Belongs to the DNA polymerase type-Y family
PAPOILPD_01401	353496.LBU_0228	5e-187	660.2	Lactobacillaceae	guaC		1.1.1.205,1.7.1.7	ko:K00088,ko:K00364	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	M00050	R01130,R01134,R08240	RC00143,RC00457,RC02207	ko00000,ko00001,ko00002,ko01000,ko04147			iSB619.SA_RS06660	Bacteria	1TNYF@1239,3F45K@33958,4HA55@91061,COG0516@1,COG0516@2	NA|NA|NA	F	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
PAPOILPD_01402	390333.Ldb0291	1.1e-245	855.5	Lactobacillaceae	purA	GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.4.4	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	M00049	R01135	RC00458,RC00459	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQ4C@1239,3F3RQ@33958,4H9YT@91061,COG0104@1,COG0104@2	NA|NA|NA	F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PAPOILPD_01403	353496.LBU_0226	4.8e-70	270.4	Lactobacillaceae	greA			ko:K03624,ko:K04760					ko00000,ko03021				Bacteria	1V1G3@1239,3F6ZK@33958,4HW8H@91061,COG0782@1,COG0782@2	NA|NA|NA	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
PAPOILPD_01404	353496.LBU_0225	2e-65	255.0	Lactobacillaceae	hsp			ko:K13993	ko04141,map04141				ko00000,ko00001,ko03110				Bacteria	1VG0E@1239,3F7DR@33958,4HPDH@91061,COG0071@1,COG0071@2	NA|NA|NA	O	Belongs to the small heat shock protein (HSP20) family
PAPOILPD_01405	353496.LBU_0224	1.4e-256	891.7	Lactobacillaceae	pepC	GO:0000096,GO:0000098,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006508,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009063,GO:0009636,GO:0009987,GO:0016054,GO:0016787,GO:0019538,GO:0019752,GO:0042221,GO:0043170,GO:0043418,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0050667,GO:0050896,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	3.4.22.40	ko:K01372					ko00000,ko01000,ko01002				Bacteria	1TRJN@1239,3F977@33958,4HBZ9@91061,COG3579@1,COG3579@2	NA|NA|NA	E	Papain family cysteine protease
PAPOILPD_01406	353496.LBU_0223	1.5e-252	878.2	Lactobacillaceae	pepC	GO:0000096,GO:0000098,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006508,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009063,GO:0009636,GO:0009987,GO:0016054,GO:0016787,GO:0019538,GO:0019752,GO:0042221,GO:0043170,GO:0043418,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0050667,GO:0050896,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	3.4.22.40	ko:K01372					ko00000,ko01000,ko01002				Bacteria	1TRJN@1239,3F3QA@33958,4HBZ9@91061,COG3579@1,COG3579@2	NA|NA|NA	E	aminopeptidase
PAPOILPD_01407	353496.LBU_1338	2.1e-144	518.8	Lactobacillaceae													Bacteria	1U7BP@1239,29Q1D@1,30AZY@2,3F9AD@33958,4IH6U@91061	NA|NA|NA		
PAPOILPD_01408	1293597.BN147_04375	0.0	1538.1	Lactobacillaceae	ppsA	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008986,GO:0009058,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019318,GO:0019319,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:1901576	2.7.9.2	ko:K01007	ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200	M00173,M00374	R00199	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000			iEcE24377_1341.EcE24377A_1919,iYL1228.KPN_02160	Bacteria	1TPK8@1239,3F3U1@33958,4ISER@91061,COG0574@1,COG0574@2,COG1080@1,COG1080@2	NA|NA|NA	H	Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate
PAPOILPD_01409	390333.Ldb1569	4.8e-288	996.5	Lactobacillaceae	ytgP	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03328,ko:K06409					ko00000,ko02000	2.A.66.2,2.A.66.2.14			Bacteria	1TNYX@1239,3F404@33958,4H9RY@91061,COG2244@1,COG2244@2	NA|NA|NA	S	Polysaccharide biosynthesis protein
PAPOILPD_01410	390333.Ldb1570	0.0	1671.4	Lactobacillaceae	leuS	GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.4	ko:K01869	ko00970,map00970	M00359,M00360	R03657	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029				Bacteria	1TP0Y@1239,3F46M@33958,4HAG1@91061,COG0495@1,COG0495@2	NA|NA|NA	J	Belongs to the class-I aminoacyl-tRNA synthetase family
PAPOILPD_01411	353496.LBU_1346	3.2e-113	414.5	Lactobacillaceae			3.6.1.27	ko:K19302	ko00550,map00550		R05627	RC00002	ko00000,ko00001,ko01000,ko01011				Bacteria	1VF2U@1239,3F5CM@33958,4HNXR@91061,COG0671@1,COG0671@2	NA|NA|NA	I	Acid phosphatase homologues
PAPOILPD_01412	353496.LBU_1347	2.7e-258	897.5	Lactobacillaceae	mdr			ko:K18935					ko00000,ko02000	2.A.1.3.60			Bacteria	1TPHW@1239,3FBVN@33958,4H9YA@91061,COG0477@1,COG0477@2	NA|NA|NA	EGP	Sugar (and other) transporter
PAPOILPD_01413	390333.Ldb1575	1.5e-214	751.9	Lactobacillaceae	metK	GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464	2.5.1.6	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	M00034,M00035,M00368,M00609	R00177,R04771	RC00021,RC01211	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPCV@1239,3F3T0@33958,4HB33@91061,COG0192@1,COG0192@2	NA|NA|NA	H	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PAPOILPD_01419	1293597.BN147_04610	2.8e-263	914.1	Lactobacillaceae	cps1C												Bacteria	1TP7R@1239,3F48Q@33958,4HC84@91061,COG2244@1,COG2244@2	NA|NA|NA	S	Membrane protein involved in the export of O-antigen and teichoic acid
PAPOILPD_01420	1293597.BN147_04605	1.1e-214	752.3	Lactobacillaceae	glf	GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0008767,GO:0009273,GO:0009987,GO:0016020,GO:0016853,GO:0016866,GO:0030312,GO:0042546,GO:0044085,GO:0044464,GO:0071554,GO:0071766,GO:0071840,GO:0071944	5.4.99.9	ko:K01854	ko00052,ko00520,map00052,map00520		R00505,R09009	RC00317,RC02396	ko00000,ko00001,ko01000			iNJ661.Rv3809c	Bacteria	1TQB9@1239,3F52G@33958,4HB5F@91061,COG0562@1,COG0562@2	NA|NA|NA	M	UDP-galactopyranose mutase
PAPOILPD_01421	1293597.BN147_10180	3.5e-148	531.2	Lactobacillaceae	brpA												Bacteria	1TR1B@1239,3F3MQ@33958,4HA09@91061,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-like function transcriptional attenuator common domain protein
PAPOILPD_01422	353496.LBU_1598	3.7e-155	554.7	Lactobacillaceae	brpA												Bacteria	1TR1B@1239,3F3MQ@33958,4HA09@91061,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-like function transcriptional attenuator common domain protein
PAPOILPD_01423	1293597.BN147_10175	0.0	1087.4	Lactobacillaceae			2.4.1.10	ko:K00692	ko00500,ko01100,ko02020,map00500,map01100,map02020		R05140	RC00077	ko00000,ko00001,ko01000,ko01003		GH68		Bacteria	1TR8C@1239,3F5DC@33958,4HBYU@91061,COG1621@1,COG1621@2,COG5263@1,COG5263@2	NA|NA|NA	M	Levansucrase/Invertase
PAPOILPD_01424	1423807.BACO01000025_gene820	6.7e-82	310.8	Lactobacillaceae				ko:K15051					ko00000				Bacteria	1TR37@1239,3FC9U@33958,4HK7D@91061,COG2169@1,COG2169@2	NA|NA|NA	F	DNA/RNA non-specific endonuclease
PAPOILPD_01425	353496.LBU_1601	1.2e-39	169.5	Lactobacillaceae													Bacteria	1U7NT@1239,29Q86@1,30B77@2,3F9YK@33958,4IHK3@91061	NA|NA|NA		
PAPOILPD_01426	353496.LBU_1602	2.4e-54	218.0	Bacteria													Bacteria	COG1476@1,COG1476@2	NA|NA|NA	K	sequence-specific DNA binding
PAPOILPD_01427	390333.Ldb1959	1.3e-182	645.6	Lactobacillaceae	gpsA	GO:0003674,GO:0003824,GO:0004367,GO:0006072,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0046167,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901576	1.1.1.94	ko:K00057	ko00564,ko01110,map00564,map01110		R00842,R00844	RC00029	ko00000,ko00001,ko01000				Bacteria	1TQ5P@1239,3F9D1@33958,4HAXW@91061,COG0240@1,COG0240@2	NA|NA|NA	I	Rossmann-like domain
PAPOILPD_01428	353496.LBU_1290	2.6e-236	824.3	Lactobacillaceae				ko:K06921					ko00000				Bacteria	1TR21@1239,3F57U@33958,4HF7F@91061,COG1672@1,COG1672@2	NA|NA|NA	S	Archaea bacterial proteins of unknown function
PAPOILPD_01429	353496.LBU_1288	7.6e-86	323.2	Lactobacillaceae	infC	GO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767		ko:K02520					ko00000,ko03012,ko03029				Bacteria	1V1RC@1239,3F4MS@33958,4HFUS@91061,COG0290@1,COG0290@2	NA|NA|NA	J	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PAPOILPD_01430	1293597.BN147_05330	1.8e-27	127.9	Lactobacillaceae	rpmI	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904		ko:K02916	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1VF5W@1239,3F7CQ@33958,4HNIQ@91061,COG0291@1,COG0291@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL35 family
PAPOILPD_01431	1293597.BN147_05325	1.1e-56	225.7	Lactobacillaceae	rplT	GO:0000027,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006355,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2000113,GO:2001141		ko:K02887	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	1V6DB@1239,3F6HZ@33958,4HH2W@91061,COG0292@1,COG0292@2	NA|NA|NA	J	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PAPOILPD_01432	353496.LBU_1285	5e-212	743.4	Lactobacillaceae	yqeH	GO:0003674,GO:0003824,GO:0003924,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019222,GO:0022613,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0042254,GO:0044085,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0060255,GO:0065007,GO:0071840,GO:0080090,GO:0090329,GO:2000104,GO:2000112,GO:2000113		ko:K06948					ko00000,ko03009				Bacteria	1TPM2@1239,3F4JU@33958,4HAAF@91061,COG1161@1,COG1161@2	NA|NA|NA	S	Ribosome biogenesis GTPase YqeH
PAPOILPD_01433	353496.LBU_1284	4.3e-115	420.6	Lactobacillaceae	nadD	GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	2.7.7.18,3.6.1.55	ko:K00969,ko:K03574	ko00760,ko01100,map00760,map01100	M00115	R00137,R03005	RC00002	ko00000,ko00001,ko00002,ko01000,ko03400				Bacteria	1V3SK@1239,3F4D6@33958,4HGXK@91061,COG1057@1,COG1057@2	NA|NA|NA	H	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PAPOILPD_01434	353496.LBU_1283	2.1e-108	398.3	Lactobacillaceae	nadD		2.7.6.3,2.7.7.18	ko:K00950,ko:K00969,ko:K06950	ko00760,ko00790,ko01100,map00760,map00790,map01100	M00115,M00126,M00841	R00137,R03005,R03503	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1V6Y1@1239,3F47C@33958,4HHRY@91061,COG1713@1,COG1713@2	NA|NA|NA	H	Hydrolase, HD family
PAPOILPD_01435	353496.LBU_1282	1.2e-58	232.3	Lactobacillaceae	rsfS	GO:0003674,GO:0005488,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0044087,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113		ko:K09710					ko00000,ko03009				Bacteria	1VA2Z@1239,3F7QN@33958,4HKEJ@91061,COG0799@1,COG0799@2	NA|NA|NA	J	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
PAPOILPD_01436	353496.LBU_1281	8.1e-213	746.1	Lactobacillaceae	ylbM												Bacteria	1TPP2@1239,3F3QC@33958,4HAZJ@91061,COG1323@1,COG1323@2	NA|NA|NA	S	Belongs to the UPF0348 family
PAPOILPD_01437	390333.Ldb1494	7.9e-100	369.8	Lactobacillaceae	yceD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464		ko:K07040					ko00000				Bacteria	1VB08@1239,3F61Z@33958,4HME9@91061,COG1399@1,COG1399@2	NA|NA|NA	S	Uncharacterized ACR, COG1399
PAPOILPD_01438	353496.LBU_1279	2.5e-127	461.5	Lactobacillaceae													Bacteria	1TS81@1239,3F421@33958,4H9NE@91061,COG0745@1,COG0745@2	NA|NA|NA	K	response regulator
PAPOILPD_01439	353496.LBU_1278	2.7e-283	980.7	Lactobacillaceae	arlS	GO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564	2.7.13.3	ko:K18940	ko02020,map02020	M00716,M00717			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1TPSK@1239,3F3NU@33958,4HAH5@91061,COG5002@1,COG5002@2	NA|NA|NA	T	Histidine kinase
PAPOILPD_01440	353496.LBU_1277	5.1e-152	543.9	Lactobacillaceae	yidC			ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9			Bacteria	1TSDN@1239,3F3P3@33958,4HCC8@91061,COG0706@1,COG0706@2	NA|NA|NA	U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PAPOILPD_01441	353496.LBU_1276	2.2e-44	184.5	Bacteria	acyP	GO:0003674,GO:0003824,GO:0003998,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016787,GO:0016817,GO:0016818,GO:0050896	3.6.1.7	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120		R00317,R01421,R01515	RC00043	ko00000,ko00001,ko01000			iSB619.SA_RS07020,iSBO_1134.SBO_2263,iSF_1195.SF0969,iSFxv_1172.SFxv_1053,iS_1188.S1036	Bacteria	COG1254@1,COG1254@2	NA|NA|NA	C	Belongs to the acylphosphatase family
PAPOILPD_01442	353496.LBU_1275	6e-132	476.9	Lactobacillaceae	spoU		2.1.1.185	ko:K03218,ko:K03437					ko00000,ko01000,ko03009,ko03016				Bacteria	1V3JP@1239,3F3NF@33958,4HCF5@91061,COG0566@1,COG0566@2	NA|NA|NA	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAPOILPD_01443	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01446	353496.LBU_1708	4.6e-263	913.3	Lactobacillaceae	fumC	GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	4.2.1.2	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	M00009,M00011,M00173,M00376	R01082	RC00443	ko00000,ko00001,ko00002,ko01000				Bacteria	1UHPH@1239,3F3K0@33958,4HA6P@91061,COG0114@1,COG0114@2	NA|NA|NA	C	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
PAPOILPD_01447	353496.LBU_1707	4.4e-253	880.2	Lactobacillaceae				ko:K03319					ko00000	2.A.47			Bacteria	1TSGE@1239,3F4RH@33958,4HDE4@91061,COG0471@1,COG0471@2	NA|NA|NA	P	Sodium:sulfate symporter transmembrane region
PAPOILPD_01448	353496.LBU_1705	4.5e-09	67.4	Lactobacillaceae	pipD			ko:K08659					ko00000,ko01000,ko01002				Bacteria	1TQ0F@1239,3F57Y@33958,4HC3G@91061,COG4690@1,COG4690@2	NA|NA|NA	M	Peptidase family C69
PAPOILPD_01449	353496.LBU_1705	6.7e-155	553.5	Lactobacillaceae	pipD			ko:K08659					ko00000,ko01000,ko01002				Bacteria	1TQ0F@1239,3F57Y@33958,4HC3G@91061,COG4690@1,COG4690@2	NA|NA|NA	M	Peptidase family C69
PAPOILPD_01450	390333.Ldb2082	4.5e-169	600.5	Lactobacillaceae	citR												Bacteria	1VSYQ@1239,3FCBZ@33958,4HU6A@91061,COG2390@1,COG2390@2	NA|NA|NA	K	Putative sugar-binding domain
PAPOILPD_01451	353496.LBU_1703	7.8e-35	154.5	Lactobacillaceae	lysM												Bacteria	1U5V5@1239,3F6J1@33958,4IFIT@91061,COG1388@1,COG1388@2	NA|NA|NA	M	LysM domain
PAPOILPD_01452	353496.LBU_1702	0.0	1681.8	Lactobacillaceae	pepN	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.4.11.2	ko:K01256,ko:K08776	ko00480,ko01100,map00480,map01100		R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002				Bacteria	1TR43@1239,3F3UH@33958,4HA20@91061,COG0308@1,COG0308@2	NA|NA|NA	E	aminopeptidase
PAPOILPD_01453	324831.LGAS_1071	2e-72	278.9	Lactobacillaceae	drgA												Bacteria	1V4FN@1239,3FCB5@33958,4HGT1@91061,COG0778@1,COG0778@2	NA|NA|NA	C	nitroreductase
PAPOILPD_01454	353496.LBU_1258	1.1e-26	125.9	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01455	1293597.BN147_01360	2.3e-42	177.9	Lactobacillaceae	rpiB		5.3.1.6	ko:K01808	ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01056,R09030	RC00376,RC00434	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1604	Bacteria	1V1W8@1239,3F6TK@33958,4HH3W@91061,COG0698@1,COG0698@2	NA|NA|NA	G	Ribose/Galactose Isomerase
PAPOILPD_01456	353496.LBU_1406	2.1e-39	167.9	Lactobacillaceae	hup			ko:K03530					ko00000,ko03032,ko03036,ko03400				Bacteria	1V9XQ@1239,3F8KW@33958,4HKF2@91061,COG0776@1,COG0776@2	NA|NA|NA	L	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
PAPOILPD_01457	390333.Ldb1645	4.2e-206	723.8	Lactobacillaceae	pbpX1												Bacteria	1V4BS@1239,3F3QN@33958,4HJRT@91061,COG1680@1,COG1680@2	NA|NA|NA	V	Beta-lactamase
PAPOILPD_01458	353496.LBU_1404	1.3e-202	712.2	Lactobacillaceae	pbpX1												Bacteria	1V4BS@1239,3F3QN@33958,4HJRT@91061,COG1680@1,COG1680@2	NA|NA|NA	V	Beta-lactamase
PAPOILPD_01459	1293597.BN147_09580	4.3e-70	271.2	Lactobacillaceae	nagZ		3.2.1.52	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP63@1239,3F4B7@33958,4HBDB@91061,COG1472@1,COG1472@2	NA|NA|NA	G	Glycosyl hydrolase family 3 N terminal domain
PAPOILPD_01462	353496.LBU_1401	1e-44	185.7	Lactobacillaceae													Bacteria	1U7ZK@1239,29QEU@1,30BE6@2,3FACZ@33958,4IHX0@91061	NA|NA|NA		
PAPOILPD_01463	1463926.JOCA01000002_gene5833	2e-172	613.2	Actinobacteria													Bacteria	2AK7G@1,2GKN3@201174,31AXN@2	NA|NA|NA		
PAPOILPD_01464	353496.LBU_1399	3.8e-85	320.9	Lactobacillaceae	pyrR		2.4.2.9	ko:K02825	ko00240,ko01100,map00240,map01100		R00966	RC00063	ko00000,ko00001,ko01000,ko03000				Bacteria	1V3GV@1239,3F4MT@33958,4HGYE@91061,COG2065@1,COG2065@2	NA|NA|NA	F	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PAPOILPD_01465	353496.LBU_1398	6.3e-108	396.7	Lactobacillaceae	rsmC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464	2.1.1.172	ko:K00564			R07234	RC00003	ko00000,ko01000,ko03009				Bacteria	1V1BG@1239,3F4NU@33958,4HHCA@91061,COG2813@1,COG2813@2	NA|NA|NA	J	Methyltransferase
PAPOILPD_01466	353496.LBU_1397	1.9e-84	318.5	Lactobacillaceae	tadA	GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360	3.5.4.33	ko:K11991			R10223	RC00477	ko00000,ko01000,ko03016				Bacteria	1V3HZ@1239,3F6IS@33958,4HH7S@91061,COG0590@1,COG0590@2	NA|NA|NA	F	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
PAPOILPD_01467	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01468	1262449.CP6013_1319	2.9e-17	94.4	Clostridiaceae	malL	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.2.1.10	ko:K01182	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00801,R01718,R01791,R06199	RC00028,RC00059,RC00077,RC00451	ko00000,ko00001,ko01000		GH13		Bacteria	1TP53@1239,247XR@186801,36DTW@31979,COG0366@1,COG0366@2	NA|NA|NA	G	PFAM alpha amylase, catalytic
PAPOILPD_01469	353496.LBU_0145	3.6e-30	136.7	Lactobacillaceae													Bacteria	1V212@1239,3FBE2@33958,4HGWT@91061,COG0657@1,COG0657@2	NA|NA|NA	I	alpha/beta hydrolase fold
PAPOILPD_01470	390333.Ldb0191	6.3e-125	453.4	Lactobacillaceae													Bacteria	1V212@1239,3FBE2@33958,4HGWT@91061,COG0657@1,COG0657@2	NA|NA|NA	I	alpha/beta hydrolase fold
PAPOILPD_01471	353496.LBU_0144	1.3e-129	469.2	Lactobacillaceae	yibF												Bacteria	1TSWX@1239,3F3S6@33958,4HBKX@91061,COG5438@1,COG5438@2	NA|NA|NA	S	overlaps another CDS with the same product name
PAPOILPD_01472	353496.LBU_0143	4.6e-181	640.6	Lactobacillaceae	yibE												Bacteria	1TPEV@1239,3F3M9@33958,4HCP3@91061,COG5438@1,COG5438@2	NA|NA|NA	S	overlaps another CDS with the same product name
PAPOILPD_01473	1293597.BN147_07580	1.5e-43	183.0	Lactobacillaceae													Bacteria	1VN62@1239,2EIZT@1,33CQY@2,3F5GU@33958,4HRPP@91061	NA|NA|NA		
PAPOILPD_01474	353496.LBU_0141	1.4e-203	715.3	Lactobacillaceae	ddl		6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502		R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	1TP2Y@1239,3F41Z@33958,4H9KB@91061,COG1181@1,COG1181@2	NA|NA|NA	F	Belongs to the D-alanine--D-alanine ligase family
PAPOILPD_01475	390333.Ldb0184	5.7e-193	680.2	Lactobacillaceae													Bacteria	1V1IM@1239,3F3QG@33958,4HRX1@91061,COG2340@1,COG2340@2	NA|NA|NA	S	Cysteine-rich secretory protein family
PAPOILPD_01476	1235799.C818_00021	2.5e-49	201.8	unclassified Lachnospiraceae													Bacteria	1V3AV@1239,24G92@186801,27NQ5@186928,COG3415@1,COG3415@2	NA|NA|NA	L	Winged helix-turn helix
PAPOILPD_01477	887325.HMPREF0381_1558	2e-93	348.6	Clostridia													Bacteria	1UZI4@1239,24BY8@186801,COG3335@1,COG3335@2	NA|NA|NA	L	Psort location Cytoplasmic, score 8.87
PAPOILPD_01478	390333.Ldb0183	5.3e-113	413.7	Lactobacillaceae	flpA		4.1.99.16,4.2.3.22,4.2.3.75	ko:K10187,ko:K21562	ko00909,ko01100,ko01110,map00909,map01100,map01110		R07647,R07648,R08543,R09487	RC01832,RC02159,RC02160,RC02183,RC02425,RC02552	ko00000,ko00001,ko01000,ko03000				Bacteria	1TVBM@1239,3F4PI@33958,4HEJG@91061,COG0664@1,COG0664@2	NA|NA|NA	K	helix_turn_helix, cAMP Regulatory protein
PAPOILPD_01479	353496.LBU_0138	2.4e-134	485.0	Lactobacillaceae													Bacteria	1U516@1239,2CCK0@1,309GI@2,3F3YE@33958,4IESZ@91061	NA|NA|NA		
PAPOILPD_01480	353496.LBU_0137	1.5e-121	442.2	Lactobacillaceae	luxT												Bacteria	1VZKY@1239,3F43G@33958,4HM1C@91061,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
PAPOILPD_01481	390333.Ldb1803	1.5e-144	518.8	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01482	525309.HMPREF0494_1998	2.5e-11	75.1	Lactobacillaceae													Bacteria	1TTKV@1239,3F7IS@33958,4IG35@91061,COG1846@1,COG1846@2	NA|NA|NA	K	Winged helix DNA-binding domain
PAPOILPD_01483	353496.LBU_0835	5.7e-149	533.5	Lactobacillaceae	supH												Bacteria	1UYU8@1239,3F3ZW@33958,4HE0K@91061,COG0561@1,COG0561@2	NA|NA|NA	G	Sucrose-6F-phosphate phosphohydrolase
PAPOILPD_01484	353496.LBU_0834	1.1e-101	375.9	Lactobacillaceae													Bacteria	1U7IG@1239,29Q5C@1,30B4A@2,3F9RK@33958,4IHF5@91061	NA|NA|NA		
PAPOILPD_01485	353496.LBU_0833	1.6e-183	648.7	Lactobacillaceae			2.7.7.65	ko:K18968	ko02026,map02026				ko00000,ko00001,ko01000,ko02000	9.B.34.1.2			Bacteria	1TSW8@1239,3F4R9@33958,4HBT1@91061,COG2199@1,COG3706@2	NA|NA|NA	T	diguanylate cyclase
PAPOILPD_01486	353496.LBU_0832	3.9e-156	557.8	Lactobacillaceae	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	1TS8B@1239,3F9T0@33958,4ISKA@91061,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
PAPOILPD_01487	353496.LBU_0831	2.9e-84	318.2	Lactobacillaceae			2.7.7.65	ko:K16923,ko:K18967		M00582			ko00000,ko00002,ko01000,ko02000	3.A.1.28,9.B.34.1.1			Bacteria	1UZUT@1239,3F4G1@33958,4HMC0@91061,COG3275@1,COG3275@2	NA|NA|NA	T	phosphorelay sensor kinase activity
PAPOILPD_01488	353496.LBU_0830	2e-130	471.9	Lactobacillaceae	cbiQ			ko:K02008,ko:K16785	ko02010,map02010	M00245,M00246,M00582			ko00000,ko00001,ko00002,ko02000	3.A.1.18,3.A.1.22,3.A.1.23,3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1UYQQ@1239,3F5GJ@33958,4HFDP@91061,COG0619@1,COG0619@2	NA|NA|NA	P	Cobalt transport protein
PAPOILPD_01489	390333.Ldb0974	2.1e-146	525.0	Lactobacillaceae				ko:K16786,ko:K16787	ko02010,map02010	M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1VTBJ@1239,3F4XB@33958,4HVE5@91061,COG1122@1,COG1122@2	NA|NA|NA	P	ABC transporter
PAPOILPD_01490	353496.LBU_0828	4.3e-138	497.3	Lactobacillaceae	cbiO2			ko:K16786,ko:K16787	ko02010,map02010	M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1TQAV@1239,3F5M4@33958,4HCMA@91061,COG1122@1,COG1122@2	NA|NA|NA	P	ABC transporter
PAPOILPD_01491	1423790.BN53_00980	9.2e-136	490.0	Lactobacillaceae													Bacteria	1TQJ0@1239,3F4C3@33958,4H9P7@91061,COG1288@1,COG1288@2	NA|NA|NA	S	C4-dicarboxylate anaerobic carrier
PAPOILPD_01492	353496.LBU_0826	3.3e-103	380.9	Lactobacillaceae													Bacteria	1V6SB@1239,3F7FV@33958,4HJ2T@91061,COG1443@1,COG1443@2	NA|NA|NA	I	NUDIX domain
PAPOILPD_01493	353496.LBU_1582	1.9e-09	67.0	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01494	390333.Ldb1523	1e-119	436.0	Lactobacillaceae	pheT	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890,ko:K06878	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1V7QA@1239,3FBJ0@33958,4HJBD@91061,COG0073@1,COG0073@2	NA|NA|NA	J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PAPOILPD_01495	353496.LBU_1306	1.6e-54	218.4	Lactobacillaceae	ytpP	GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748	2.7.1.180,5.3.4.1	ko:K01829,ko:K03671,ko:K03734,ko:K06196	ko04621,ko05418,map04621,map05418				ko00000,ko00001,ko01000,ko02000,ko03110	5.A.1.2			Bacteria	1VAS6@1239,3F72K@33958,4HKGM@91061,COG0526@1,COG0526@2	NA|NA|NA	CO	Thioredoxin
PAPOILPD_01496	353496.LBU_1307	2.2e-122	444.9	Lactobacillaceae	trmB	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0040007,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234	2.1.1.297,2.1.1.33	ko:K02493,ko:K03439			R10806	RC00003,RC03279	ko00000,ko01000,ko03012,ko03016				Bacteria	1TQCA@1239,3F3QM@33958,4HC08@91061,COG0220@1,COG0220@2	NA|NA|NA	J	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
PAPOILPD_01497	353496.LBU_1308	3.7e-216	757.3	Lactobacillaceae	ecsB			ko:K01992		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1V1VG@1239,3F4HH@33958,4HG1K@91061,COG4473@1,COG4473@2	NA|NA|NA	U	ABC transporter
PAPOILPD_01498	390333.Ldb1527	1.8e-136	491.9	Lactobacillaceae	ecsA			ko:K01990		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TQIH@1239,3F444@33958,4HA2B@91061,COG1131@1,COG1131@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_01499	390333.Ldb1528	2.4e-77	294.7	Lactobacillaceae	hit			ko:K02503					ko00000,ko04147				Bacteria	1V9ZJ@1239,3FCD7@33958,4HJ19@91061,COG0537@1,COG0537@2	NA|NA|NA	FG	Scavenger mRNA decapping enzyme C-term binding
PAPOILPD_01500	353496.LBU_1311	1.2e-53	215.7	Lactobacillaceae													Bacteria	1U65N@1239,29P5R@1,30A3W@2,3F74E@33958,4IFVH@91061	NA|NA|NA		
PAPOILPD_01501	353496.LBU_1312	1.4e-162	578.9	Lactobacillaceae	pyrD	GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	1.3.1.14,1.3.98.1	ko:K00226,ko:K02823,ko:K17828	ko00240,ko01100,map00240,map01100	M00051	R01867,R01869	RC00051	ko00000,ko00001,ko00002,ko01000			iYO844.BSU15540	Bacteria	1TPFV@1239,3F4PJ@33958,4HA5H@91061,COG0167@1,COG0167@2	NA|NA|NA	F	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
PAPOILPD_01502	390333.Ldb1531	1.7e-131	475.3	Lactobacillaceae	pyrF	GO:0003674,GO:0003824,GO:0004590,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.1.23	ko:K01591	ko00240,ko01100,map00240,map01100	M00051	R00965	RC00409	ko00000,ko00001,ko00002,ko01000			iECO103_1326.ECO103_1444,iECSF_1327.ECSF_1264,iSFV_1184.SFV_1294,iSF_1195.SF1285,iSFxv_1172.SFxv_1457,iS_1188.S1368,ic_1306.c1750	Bacteria	1TPPH@1239,3F47Y@33958,4HAJ2@91061,COG0284@1,COG0284@2	NA|NA|NA	F	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
PAPOILPD_01503	353496.LBU_1314	2.8e-111	407.9	Lactobacillaceae	pyrE		2.4.2.10,4.1.1.23	ko:K00762,ko:K01591,ko:K13421	ko00240,ko00983,ko01100,map00240,map00983,map01100	M00051	R00965,R01870,R08231	RC00063,RC00409,RC00611	ko00000,ko00001,ko00002,ko01000			iYO844.BSU15560	Bacteria	1V1BZ@1239,3F487@33958,4HFV7@91061,COG0461@1,COG0461@2	NA|NA|NA	F	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PAPOILPD_01504	353496.LBU_1315	5e-149	533.9	Lactobacillaceae	prsA		5.2.1.8	ko:K02597,ko:K07533					ko00000,ko01000,ko03110				Bacteria	1TX3R@1239,3FB3Y@33958,4HC85@91061,COG0760@1,COG0760@2	NA|NA|NA	M	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
PAPOILPD_01505	1423780.LOT_0648	4.7e-36	158.3	Lactobacillaceae	aroC	GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016491,GO:0016651,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	4.2.3.5	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R01714	RC00586	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_0976,iNJ661.Rv2540c	Bacteria	1TQ40@1239,3F502@33958,4HA0H@91061,COG0082@1,COG0082@2	NA|NA|NA	E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PAPOILPD_01506	353496.LBU_1318	1.5e-42	178.3	Bacteria	aroK	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019438,GO:0019632,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0046872,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615	1.1.1.25,2.7.1.71,4.2.1.10,4.2.3.4	ko:K00014,ko:K00891,ko:K03785,ko:K03786,ko:K13829,ko:K15546	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412,R02413,R03083,R03084	RC00002,RC00078,RC00206,RC00847,RC00848	ko00000,ko00001,ko00002,ko01000,ko03000			iAPECO1_1312.APECO1_1620,iECOK1_1307.ECOK1_0367,iECS88_1305.ECS88_0383,iUMN146_1321.UM146_15425,iUTI89_1310.UTI89_C0407,iYL1228.KPN_00332	Bacteria	COG0703@1,COG0703@2	NA|NA|NA	F	shikimate kinase activity
PAPOILPD_01507	353496.LBU_1022	2.6e-70	271.2	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01508	1293597.BN147_01990	1.1e-33	148.7	Lactobacillaceae				ko:K07484					ko00000				Bacteria	1VZPC@1239,3FBX3@33958,4H9WS@91061,COG3316@1,COG3316@2	NA|NA|NA	L	Transposase and inactivated derivatives
PAPOILPD_01509	390333.Ldb1504	2.7e-32	144.4	Lactobacillaceae													Bacteria	1U77F@1239,29PYB@1,30AWR@2,3F92I@33958,4IH28@91061	NA|NA|NA		
PAPOILPD_01510	353496.LBU_1291	0.0	1273.5	Lactobacillaceae	thrS	GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TP78@1239,3F3TC@33958,4HABZ@91061,COG0441@1,COG0441@2	NA|NA|NA	J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PAPOILPD_01511	353496.LBU_1292	7e-167	593.2	Lactobacillaceae	dnaI	GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837		ko:K11144					ko00000,ko03032				Bacteria	1TPZX@1239,3F4JK@33958,4HABS@91061,COG1484@1,COG1484@2	NA|NA|NA	L	Primosomal protein DnaI
PAPOILPD_01512	353496.LBU_1293	8.9e-240	835.9	Lactobacillaceae	dnaB			ko:K03346					ko00000,ko03032				Bacteria	1TSBB@1239,3FB6I@33958,4HE63@91061,COG3611@1,COG3611@2	NA|NA|NA	L	Replication initiation and membrane attachment
PAPOILPD_01513	353496.LBU_1294	2.7e-82	311.2	Lactobacillaceae	nrdR	GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141		ko:K07738					ko00000,ko03000				Bacteria	1V3JA@1239,3F65S@33958,4HGXA@91061,COG1327@1,COG1327@2	NA|NA|NA	K	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PAPOILPD_01514	353496.LBU_1295	4.7e-100	370.5	Lactobacillaceae	coaE		2.7.1.24	ko:K00859	ko00770,ko01100,map00770,map01100	M00120	R00130	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000				Bacteria	1V6FS@1239,3F6WF@33958,4HII3@91061,COG0237@1,COG0237@2	NA|NA|NA	F	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PAPOILPD_01515	390333.Ldb1511	5.5e-155	553.5	Lactobacillaceae	fpg		3.2.2.23,4.2.99.18	ko:K10563	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	1TPM9@1239,3F43E@33958,4H9Q7@91061,COG0266@1,COG0266@2	NA|NA|NA	L	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
PAPOILPD_01516	353496.LBU_1297	0.0	1708.3	Lactobacillaceae	polA	GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0030312,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440		R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400				Bacteria	1TPKJ@1239,3F3ZA@33958,4H9S7@91061,COG0258@1,COG0258@2,COG0749@1,COG0749@2	NA|NA|NA	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PAPOILPD_01517	353496.LBU_1755	3.1e-223	780.8	Lactobacillaceae	ywhK												Bacteria	1V841@1239,3F50M@33958,4HITC@91061,COG3391@1,COG3391@2	NA|NA|NA	S	Membrane
PAPOILPD_01518	390333.Ldb2157	9e-78	296.2	Lactobacillaceae	ykuL												Bacteria	1V9HN@1239,3F678@33958,4HH3X@91061,COG0517@1,COG0517@2	NA|NA|NA	S	(CBS) domain
PAPOILPD_01519	353496.LBU_1757	2.5e-311	1074.7	Lactobacillaceae	cadA												Bacteria	1TQ07@1239,3F4JI@33958,4H9SP@91061,COG2217@1,COG2217@2	NA|NA|NA	P	P-type ATPase
PAPOILPD_01520	390333.Ldb2159	4.8e-197	693.7	Lactobacillaceae	napA	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008150,GO:0008324,GO:0009847,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015297,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032502,GO:0034220,GO:0035725,GO:0044425,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0098655,GO:0098660,GO:0098662											Bacteria	1TS32@1239,3FCEG@33958,4HP0X@91061,COG0475@1,COG0475@2	NA|NA|NA	P	Sodium/hydrogen exchanger family
PAPOILPD_01521	353496.LBU_1759	5.4e-121	440.3	Lactobacillaceae				ko:K07052					ko00000				Bacteria	1VFRX@1239,3F4Q0@33958,4HRQQ@91061,COG1266@1,COG1266@2	NA|NA|NA	S	CAAX protease self-immunity
PAPOILPD_01522	390333.Ldb2161	2.2e-199	701.4	Lactobacillaceae													Bacteria	1V8H4@1239,3FC81@33958,4HI4B@91061,COG1434@1,COG1434@2	NA|NA|NA	S	DUF218 domain
PAPOILPD_01523	353496.LBU_1762	4.3e-192	677.2	Lactobacillaceae	tcsA			ko:K02058,ko:K07335		M00221			ko00000,ko00002,ko02000	3.A.1.2			Bacteria	1TPEU@1239,3F3MZ@33958,4HANH@91061,COG1744@1,COG1744@2	NA|NA|NA	S	ABC transporter substrate-binding protein PnrA-like
PAPOILPD_01527	390333.Ldb1187	2.3e-34	151.0	Lactobacillaceae			4.4.1.8	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230		R00782,R01286,R02408,R04941	RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303	ko00000,ko00001,ko01000,ko01007				Bacteria	1TP5G@1239,3F4JX@33958,4H9PE@91061,COG1168@1,COG1168@2	NA|NA|NA	E	Aminotransferase, class I
PAPOILPD_01528	353496.LBU_1013	6.1e-130	470.7	Lactobacillaceae	htpX			ko:K03799		M00743			ko00000,ko00002,ko01000,ko01002				Bacteria	1TP23@1239,3F55C@33958,4HB11@91061,COG0501@1,COG0501@2	NA|NA|NA	O	Peptidase family M48
PAPOILPD_01529	353496.LBU_1012	6.1e-92	343.6	Lactobacillaceae			1.6.5.2	ko:K19267	ko00130,ko01110,map00130,map01110		R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000				Bacteria	1TT90@1239,3F4UU@33958,4HC1K@91061,COG0702@1,COG0702@2	NA|NA|NA	GM	NmrA-like family
PAPOILPD_01530	390333.Ldb1181	1.2e-163	582.4	Lactobacillaceae				ko:K05847	ko02010,map02010	M00209			ko00000,ko00001,ko00002,ko02000	3.A.1.12			Bacteria	1TPV8@1239,3F55H@33958,4H9SI@91061,COG1125@1,COG1125@2	NA|NA|NA	E	ABC transporter, ATP-binding protein
PAPOILPD_01531	353496.LBU_1009	2e-267	927.9	Lactobacillaceae	proWX			ko:K05845,ko:K05846	ko02010,map02010	M00209			ko00000,ko00001,ko00002,ko02000	3.A.1.12			Bacteria	1TQ7D@1239,3F44S@33958,4HBDR@91061,COG1174@1,COG1174@2,COG1732@1,COG1732@2	NA|NA|NA	EM	Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
PAPOILPD_01532	390333.Ldb1179	1.5e-264	918.3	Lactobacillaceae	gapN	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0043891,GO:0047100,GO:0055114	1.2.1.9	ko:K00131	ko00010,ko00030,ko01100,ko01120,ko01200,map00010,map00030,map01100,map01120,map01200	M00308,M00633	R01058	RC00242	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP4S@1239,3F47F@33958,4H9MF@91061,COG1012@1,COG1012@2	NA|NA|NA	C	Belongs to the aldehyde dehydrogenase family
PAPOILPD_01533	1293597.BN147_00515	3e-146	524.6	Lactobacillaceae	metA	GO:0003674,GO:0003824,GO:0008374,GO:0008899,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016750	2.3.1.46	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	M00017	R01777	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQVR@1239,3F5CA@33958,4H9W4@91061,COG1897@1,COG1897@2	NA|NA|NA	E	Transfers an acetyl group from acetyl-CoA to
PAPOILPD_01534	353496.LBU_1005	2.2e-134	485.0	Bacilli	prsW												Bacteria	1UZGQ@1239,4HCGD@91061,COG2339@1,COG2339@2	NA|NA|NA	S	Involved in the degradation of specific anti-sigma factors
PAPOILPD_01535	390333.Ldb1175	3.1e-110	404.4	Lactobacillaceae	pcp	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0071704,GO:1901564	3.4.19.3	ko:K01304					ko00000,ko01000,ko01002				Bacteria	1TRRX@1239,3F46I@33958,4HCIJ@91061,COG2039@1,COG2039@2	NA|NA|NA	O	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
PAPOILPD_01536	353496.LBU_1003	1.3e-25	121.7	Lactobacillaceae													Bacteria	1U8D1@1239,2ATEM@1,31IY3@2,3FAUN@33958,4IIB0@91061	NA|NA|NA		
PAPOILPD_01537	390333.Ldb2186	9.1e-170	602.8	Lactobacillaceae	yufQ			ko:K02057		M00221			ko00000,ko00002,ko02000	3.A.1.2			Bacteria	1TP8Y@1239,3F4AJ@33958,4HAX4@91061,COG1079@1,COG1079@2	NA|NA|NA	S	Belongs to the binding-protein-dependent transport system permease family
PAPOILPD_01538	353496.LBU_1770	3.4e-203	714.1	Lactobacillaceae	yufP	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0015144,GO:0015145,GO:0015749,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0044425,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944		ko:K02057		M00221			ko00000,ko00002,ko02000	3.A.1.2			Bacteria	1TP1F@1239,3F59X@33958,4H9VE@91061,COG4603@1,COG4603@2	NA|NA|NA	S	Belongs to the binding-protein-dependent transport system permease family
PAPOILPD_01539	390333.Ldb2184	2e-283	981.1	Lactobacillaceae	xylG		3.6.3.17	ko:K02056,ko:K06400		M00221			ko00000,ko00002,ko01000,ko02000	3.A.1.2			Bacteria	1UYQA@1239,3F50N@33958,4HVSH@91061,COG3845@1,COG3845@2	NA|NA|NA	S	ABC transporter
PAPOILPD_01540	390333.Ldb2183	3.8e-180	637.5	Lactobacillaceae	tcsA			ko:K02058,ko:K07335		M00221			ko00000,ko00002,ko02000	3.A.1.2			Bacteria	1TPEU@1239,3F3MZ@33958,4HANH@91061,COG1744@1,COG1744@2	NA|NA|NA	S	ABC transporter substrate-binding protein PnrA-like
PAPOILPD_01541	353496.LBU_1766	2.3e-70	271.9	Lactobacillaceae													Bacteria	1VE35@1239,2DPC1@1,331GC@2,3F66X@33958,4HMP3@91061	NA|NA|NA	S	Domain of unknown function (DUF4352)
PAPOILPD_01542	353496.LBU_1765	2e-186	658.3	Lactobacillaceae													Bacteria	1V7U3@1239,3F5QP@33958,4HKIZ@91061,COG0515@1,COG0515@2	NA|NA|NA	KLT	Protein tyrosine kinase
PAPOILPD_01543	390333.Ldb2164	1.8e-66	258.5	Lactobacillaceae													Bacteria	1VJ79@1239,2E529@1,32ZVG@2,3FBN0@33958,4HRTV@91061	NA|NA|NA	S	Psort location Cytoplasmic, score
PAPOILPD_01545	525365.HMPREF0548_1535	3.1e-36	158.7	Lactobacillaceae			2.7.13.3	ko:K07706	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1V1ET@1239,3F71I@33958,4HGNA@91061,COG3290@1,COG3290@2	NA|NA|NA	T	GHKL domain
PAPOILPD_01546	1605.Lani381_0264	2.8e-14	84.7	Lactobacillaceae				ko:K07707	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko02022				Bacteria	1VYF7@1239,3FCFC@33958,4HX3P@91061,COG3279@1,COG3279@2	NA|NA|NA	K	LytTr DNA-binding domain
PAPOILPD_01547	525365.HMPREF0548_1536	3.1e-25	121.3	Lactobacillaceae				ko:K07707	ko02020,ko02024,map02020,map02024	M00495			ko00000,ko00001,ko00002,ko02022				Bacteria	1V392@1239,3F6AD@33958,4HHAI@91061,COG3279@1,COG3279@2	NA|NA|NA	K	LytTr DNA-binding domain
PAPOILPD_01549	326425.lhe_1092	3.9e-19	99.8	Lactobacillaceae	magIII			ko:K07457					ko00000				Bacteria	1V4SG@1239,3F62T@33958,4HI5U@91061,COG2231@1,COG2231@2	NA|NA|NA	L	Base excision DNA repair protein, HhH-GPD family
PAPOILPD_01550	326425.lhe_1094	6.5e-57	226.5	Lactobacillaceae	folB		1.13.11.81,2.5.1.15,2.7.6.3,4.1.2.25,5.1.99.8	ko:K00796,ko:K00950,ko:K01633,ko:K13940	ko00790,ko01100,map00790,map01100	M00126,M00840,M00841	R03066,R03067,R03503,R03504,R11037,R11073	RC00002,RC00017,RC00121,RC00721,RC00842,RC00943,RC01479,RC03333,RC03334	ko00000,ko00001,ko00002,ko01000				Bacteria	1VA0I@1239,3F7N6@33958,4HKKK@91061,COG1539@1,COG1539@2	NA|NA|NA	H	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PAPOILPD_01551	353496.LBU_0193	2.3e-201	708.0	Lactobacillaceae	folE	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006082,GO:0006139,GO:0006575,GO:0006725,GO:0006729,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008616,GO:0009058,GO:0009108,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0019752,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0042455,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901657,GO:1901659	1.13.11.81,2.5.1.15,2.7.6.3,3.5.4.16,4.1.2.25,5.1.99.8	ko:K00796,ko:K00950,ko:K01495,ko:K01633,ko:K13940	ko00790,ko01100,map00790,map01100	M00126,M00840,M00841,M00842,M00843	R00428,R03066,R03067,R03503,R03504,R04639,R05046,R05048,R11037,R11073	RC00002,RC00017,RC00121,RC00263,RC00294,RC00323,RC00721,RC00842,RC00943,RC00945,RC01188,RC01479,RC03333,RC03334	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv3609c	Bacteria	1TRNM@1239,3F4A0@33958,4HAXS@91061,COG0302@1,COG0302@2,COG0801@1,COG0801@2	NA|NA|NA	F	GTP cyclohydrolase 1
PAPOILPD_01552	353496.LBU_0194	2.4e-248	864.4	Lactobacillaceae	folC		6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000			iLJ478.TM0166	Bacteria	1TPX5@1239,3F3ZR@33958,4HBJM@91061,COG0285@1,COG0285@2	NA|NA|NA	H	Belongs to the folylpolyglutamate synthase family
PAPOILPD_01553	390333.Ldb0249	1.5e-200	705.3	Lactobacillaceae	folP	GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.15	ko:K00796,ko:K18824,ko:K18974	ko00790,ko01100,map00790,map01100	M00126,M00841	R03066,R03067	RC00121,RC00842	ko00000,ko00001,ko00002,ko01000,ko01504				Bacteria	1TPKT@1239,3F4SS@33958,4H9SY@91061,COG0294@1,COG0294@2	NA|NA|NA	H	dihydropteroate synthase
PAPOILPD_01554	1423743.JCM14108_352	2.2e-96	358.2	Lactobacillaceae			3.6.1.55,3.6.1.67	ko:K03207,ko:K03574,ko:K19965	ko00790,map00790	M00126	R04638	RC00002	ko00000,ko00001,ko00002,ko01000,ko03400				Bacteria	1VFNI@1239,3F4CG@33958,4HQPJ@91061,COG1051@1,COG1051@2	NA|NA|NA	F	NUDIX domain
PAPOILPD_01555	326425.lhe_1101	4.6e-70	270.4	Lactobacillaceae	adhR												Bacteria	1VAAP@1239,3F6JI@33958,4HKZ9@91061,COG0789@1,COG0789@2	NA|NA|NA	K	helix_turn_helix, mercury resistance
PAPOILPD_01556	1033837.WANG_1274	1.3e-111	409.1	Lactobacillaceae	papP			ko:K02029		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	1TRU3@1239,3F3XD@33958,4HGE1@91061,COG0765@1,COG0765@2	NA|NA|NA	P	ABC transporter, permease protein
PAPOILPD_01557	326425.lhe_1103	2.6e-78	298.5	Lactobacillaceae				ko:K02029,ko:K10040	ko02010,map02010	M00228,M00236			ko00000,ko00001,ko00002,ko02000	3.A.1.3			Bacteria	1TR7R@1239,3F45E@33958,4HGVA@91061,COG0765@1,COG0765@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_01558	1033837.WANG_1272	2.4e-133	481.5	Lactobacillaceae	glnQ		3.6.3.21	ko:K02028		M00236			ko00000,ko00002,ko01000,ko02000	3.A.1.3			Bacteria	1TNYD@1239,3FC3P@33958,4HDK7@91061,COG1126@1,COG1126@2	NA|NA|NA	E	ABC transporter, ATP-binding protein
PAPOILPD_01559	326425.lhe_1105	9.1e-161	572.8	Lactobacillaceae	cjaA			ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	1TT11@1239,3F54P@33958,4HFBQ@91061,COG0834@1,COG0834@2	NA|NA|NA	ET	ABC transporter substrate-binding protein
PAPOILPD_01560	353496.LBU_1289	4.4e-15	87.4	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01561	1293597.BN147_03520	5e-100	370.5	Lactobacillaceae	baeR												Bacteria	1TQ1U@1239,3F4DN@33958,4HA4B@91061,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
PAPOILPD_01562	1293597.BN147_03515	1e-139	503.4	Lactobacillaceae				ko:K02027		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	1TPX9@1239,3F579@33958,4HI13@91061,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
PAPOILPD_01564	353496.LBU_0893	2.6e-72	278.1	Lactobacillaceae													Bacteria	1V66T@1239,3FAHE@33958,4I2KD@91061,COG2199@1,COG2199@2	NA|NA|NA	T	Diguanylate cyclase, GGDEF domain
PAPOILPD_01565	353496.LBU_0892	1e-67	263.1	Lactobacillaceae				ko:K07126					ko00000				Bacteria	1UVA4@1239,3F77E@33958,4IFX4@91061,COG0790@1,COG0790@2	NA|NA|NA	S	Sel1-like repeats.
PAPOILPD_01566	353496.LBU_0891	5.5e-193	680.2	Lactobacillaceae													Bacteria	1VK4A@1239,2EM25@1,33ERN@2,3F53P@33958,4HRGD@91061	NA|NA|NA	S	Uncharacterized protein conserved in bacteria (DUF2325)
PAPOILPD_01567	390333.Ldb1044	1.1e-206	725.7	Lactobacillaceae	glxK		2.7.1.165	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130		R08572	RC00002,RC00428	ko00000,ko00001,ko01000				Bacteria	1TPSI@1239,3F3V2@33958,4HA91@91061,COG1929@1,COG1929@2	NA|NA|NA	G	Belongs to the glycerate kinase type-1 family
PAPOILPD_01568	353496.LBU_0889	2.8e-199	701.0	Lactobacillaceae	xerS	GO:0000150,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008907,GO:0009009,GO:0009037,GO:0009987,GO:0015074,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140097,GO:1901360		ko:K04763					ko00000,ko03036				Bacteria	1TPQB@1239,3F3P9@33958,4HANE@91061,COG4974@1,COG4974@2	NA|NA|NA	L	Belongs to the 'phage' integrase family
PAPOILPD_01570	908339.HMPREF9265_1198	5.8e-146	523.5	Lactobacillaceae				ko:K03496					ko00000,ko03036,ko04812				Bacteria	1V6Q6@1239,3F477@33958,4HINH@91061,COG1192@1,COG1192@2	NA|NA|NA	D	CobQ CobB MinD ParA nucleotide binding domain protein
PAPOILPD_01571	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01574	353496.LBU_0814	7.9e-152	543.1	Lactobacillaceae	pstS			ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	M00222			ko00000,ko00001,ko00002,ko02000	3.A.1.7			Bacteria	1TQ5X@1239,3F4ER@33958,4HBEB@91061,COG0226@1,COG0226@2	NA|NA|NA	P	Phosphate
PAPOILPD_01575	353496.LBU_0815	1.6e-160	572.0	Lactobacillaceae	pstC			ko:K02037	ko02010,map02010	M00222			ko00000,ko00001,ko00002,ko02000	3.A.1.7			Bacteria	1TSPP@1239,3F3NI@33958,4HC9H@91061,COG0573@1,COG0573@2	NA|NA|NA	P	probably responsible for the translocation of the substrate across the membrane
PAPOILPD_01576	353496.LBU_0816	4.8e-157	560.5	Lactobacillaceae	pstA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K02038	ko02010,map02010	M00222			ko00000,ko00001,ko00002,ko02000	3.A.1.7			Bacteria	1TP74@1239,3F412@33958,4HAKF@91061,COG0581@1,COG0581@2	NA|NA|NA	P	Phosphate transport system permease protein PstA
PAPOILPD_01577	353496.LBU_0817	5.4e-141	506.9	Lactobacillaceae	pstB	GO:0003674,GO:0003824,GO:0005215,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015114,GO:0015318,GO:0015399,GO:0015405,GO:0015415,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0034220,GO:0035435,GO:0042623,GO:0042626,GO:0043225,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0098660,GO:0098661,GO:0099133	3.6.3.27	ko:K02036	ko02010,map02010	M00222			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.7			Bacteria	1TP1M@1239,3F3SY@33958,4HAB1@91061,COG1117@1,COG1117@2	NA|NA|NA	P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PAPOILPD_01578	353496.LBU_0818	2.1e-109	401.7	Lactobacillaceae	phoU			ko:K02039					ko00000				Bacteria	1URN3@1239,3F46W@33958,4HEU9@91061,COG0704@1,COG0704@2	NA|NA|NA	P	Plays a role in the regulation of phosphate uptake
PAPOILPD_01579	353496.LBU_0819	4.1e-124	450.7	Lactobacillaceae													Bacteria	1TQY9@1239,3F5D4@33958,4HJMI@91061,COG0745@1,COG0745@2	NA|NA|NA	T	Transcriptional regulatory protein, C terminal
PAPOILPD_01580	353496.LBU_0820	4.7e-299	1033.1	Lactobacillaceae	phoR		2.7.13.3	ko:K07636	ko02020,map02020	M00434			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	1TQ1H@1239,3F3W2@33958,4HB1B@91061,COG5002@1,COG5002@2	NA|NA|NA	T	Histidine kinase
PAPOILPD_01581	353496.LBU_0822	6.7e-31	139.4	Lactobacillaceae	lsa			ko:K06158,ko:K19350	ko02010,map02010				ko00000,ko00001,ko01504,ko02000,ko03012	3.A.1.121			Bacteria	1TNYS@1239,3F53D@33958,4HBFK@91061,COG0488@1,COG0488@2	NA|NA|NA	S	ABC transporter
PAPOILPD_01583	353496.LBU_0823	1.1e-118	432.6	Firmicutes			3.6.1.13	ko:K01515	ko00230,map00230		R01054	RC00002	ko00000,ko00001,ko01000				Bacteria	1V42T@1239,COG0494@1,COG0494@2	NA|NA|NA	L	NUDIX domain
PAPOILPD_01584	390333.Ldb0795	1e-262	912.1	Lactobacillaceae	frdC		1.3.5.4	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	M00009,M00011,M00150,M00173	R02164	RC00045	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPAR@1239,3F3KJ@33958,4HAXN@91061,COG1053@1,COG1053@2	NA|NA|NA	C	FAD binding domain
PAPOILPD_01585	353496.LBU_0684	5.9e-113	413.7	Lactobacillaceae	metI			ko:K02072	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	1TRSY@1239,3F48A@33958,4HBEV@91061,COG2011@1,COG2011@2	NA|NA|NA	P	ABC transporter permease
PAPOILPD_01586	353496.LBU_0683	1.3e-185	655.6	Lactobacillaceae	metN			ko:K02071	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	1TPPN@1239,3F3U5@33958,4H9VX@91061,COG1135@1,COG1135@2	NA|NA|NA	P	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PAPOILPD_01587	353496.LBU_0682	1.1e-118	433.0	Lactobacillaceae	metQ2			ko:K02073	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	1TQAS@1239,3F3WP@33958,4HCTA@91061,COG1464@1,COG1464@2	NA|NA|NA	P	Belongs to the nlpA lipoprotein family
PAPOILPD_01588	353496.LBU_0681	0.0	1474.5	Lactobacillaceae	aha1			ko:K12952					ko00000,ko01000	3.A.3.23			Bacteria	1TPF5@1239,3F4Y1@33958,4H9ZI@91061,COG0474@1,COG0474@2	NA|NA|NA	P	E1-E2 ATPase
PAPOILPD_01589	353496.LBU_0680	4.5e-88	330.5	Lactobacillaceae	folA		1.5.1.3	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	M00126,M00840	R00936,R00937,R00939,R00940,R02235,R02236,R11765	RC00109,RC00110,RC00158	ko00000,ko00001,ko00002,ko01000				Bacteria	1VB80@1239,3F6Y4@33958,4HIGJ@91061,COG0262@1,COG0262@2	NA|NA|NA	H	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PAPOILPD_01590	353496.LBU_0679	9.7e-188	662.5	Lactobacillaceae	thyA	GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009125,GO:0009129,GO:0009130,GO:0009131,GO:0009157,GO:0009159,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009178,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0032259,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042083,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046073,GO:0046078,GO:0046079,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	2.1.1.45	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	M00053	R02101	RC00219,RC00332	ko00000,ko00001,ko00002,ko01000				Bacteria	1TSIR@1239,3F3SB@33958,4H9QS@91061,COG0207@1,COG0207@2	NA|NA|NA	F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PAPOILPD_01591	1293597.BN147_09705	1.1e-146	526.2	Lactobacillaceae			1.1.1.28	ko:K03778	ko00620,ko01120,map00620,map01120		R00704	RC00044	ko00000,ko00001,ko01000				Bacteria	1U7FE@1239,3F9IZ@33958,4IHBE@91061,COG1052@1,COG1052@2	NA|NA|NA	CH	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
PAPOILPD_01592	390333.Ldb0111	6.4e-54	216.5	Lactobacillaceae													Bacteria	1TSRV@1239,3F46B@33958,4HCIZ@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC-type multidrug transport system, ATPase and permease components
PAPOILPD_01593	390333.Ldb0110	1e-279	968.8	Lactobacillaceae													Bacteria	1TSRV@1239,3F46B@33958,4HCIZ@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC-type multidrug transport system, ATPase and permease components
PAPOILPD_01594	1293597.BN147_02740	1.4e-228	798.9	Lactobacillaceae	mmgC		1.3.8.1	ko:K00248,ko:K18244	ko00071,ko00280,ko00650,ko01100,ko01110,ko01120,ko01200,ko01212,map00071,map00280,map00650,map01100,map01110,map01120,map01200,map01212		R01175,R01178,R02661,R03172,R04751	RC00052,RC00068,RC00076,RC00120,RC00148	ko00000,ko00001,ko01000				Bacteria	1TP57@1239,3F40U@33958,4HA2A@91061,COG1960@1,COG1960@2	NA|NA|NA	I	Acyl-CoA dehydrogenase, C-terminal domain
PAPOILPD_01596	353496.LBU_0071	4.2e-91	340.5	Lactobacillaceae	luxS	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0007154,GO:0007267,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009116,GO:0009119,GO:0009372,GO:0009987,GO:0010699,GO:0016053,GO:0016829,GO:0016846,GO:0017144,GO:0019284,GO:0019752,GO:0023052,GO:0033353,GO:0034641,GO:0042278,GO:0043094,GO:0043102,GO:0043436,GO:0043768,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0046128,GO:0046394,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0051704,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657	4.4.1.21	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	M00609	R01291	RC00069,RC01929	ko00000,ko00001,ko00002,ko01000			iECIAI39_1322.ECIAI39_2877,iPC815.YPO3300	Bacteria	1V1CH@1239,3F4W2@33958,4HFPR@91061,COG1854@1,COG1854@2	NA|NA|NA	H	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
PAPOILPD_01597	353496.LBU_0070	5e-71	273.9	Lactobacillaceae	metQ_4			ko:K02073	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	1V0Z6@1239,3FC6K@33958,4HBBW@91061,COG1464@1,COG1464@2	NA|NA|NA	P	Belongs to the nlpA lipoprotein family
PAPOILPD_01598	353496.LBU_0069	4.7e-73	280.4	Lactobacillaceae	def		3.5.1.31,3.5.1.88	ko:K01450,ko:K01462	ko00270,ko00630,map00270,map00630		R00653	RC00165,RC00323	ko00000,ko00001,ko01000				Bacteria	1V73T@1239,3F6ZA@33958,4HISW@91061,COG0242@1,COG0242@2	NA|NA|NA	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins
PAPOILPD_01600	390333.Ldb0102	7.3e-225	786.2	Lactobacillaceae			1.1.3.15	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130		R00475	RC00042	ko00000,ko00001,ko01000				Bacteria	1TPBC@1239,3F4AD@33958,4H9UU@91061,COG0277@1,COG0277@2	NA|NA|NA	C	FAD linked oxidases, C-terminal domain
PAPOILPD_01601	353496.LBU_0066	5.1e-187	660.2	Lactobacillaceae	ldhA		1.1.1.28	ko:K03778	ko00620,ko01120,map00620,map01120		R00704	RC00044	ko00000,ko00001,ko01000				Bacteria	1TSZ6@1239,3FB6C@33958,4HH0S@91061,COG1052@1,COG1052@2	NA|NA|NA	C	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAPOILPD_01602	353496.LBU_1458	2.4e-142	511.5	Lactobacillaceae	cbiQ			ko:K16785,ko:K16786,ko:K16787	ko02010,map02010	M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35		iSB619.SA_RS14165	Bacteria	1TPMV@1239,3F3Y9@33958,4HBTW@91061,COG0619@1,COG0619@2	NA|NA|NA	P	cobalt transport
PAPOILPD_01603	390333.Ldb1709	0.0	1106.7	Lactobacillaceae	ykoD	GO:0003674,GO:0003824,GO:0005215,GO:0006810,GO:0008150,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085		ko:K02006,ko:K16786,ko:K16787	ko02010,map02010	M00245,M00246,M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.18,3.A.1.22,3.A.1.23,3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	1TPH8@1239,3F4XP@33958,4HAJM@91061,COG1122@1,COG1122@2	NA|NA|NA	P	ABC transporter, ATP-binding protein
PAPOILPD_01604	390333.Ldb1710	1.6e-97	362.1	Lactobacillaceae				ko:K16924,ko:K16927		M00582			ko00000,ko00002,ko02000	3.A.1.29,3.A.1.32			Bacteria	1V1GT@1239,3F5A7@33958,4HGAE@91061,COG4720@1,COG4720@2	NA|NA|NA	S	UPF0397 protein
PAPOILPD_01605	390333.Ldb1711	2.7e-157	561.2	Lactobacillaceae	salL	GO:0003674,GO:0003824,GO:0016740,GO:0016765	2.5.1.63,2.5.1.94	ko:K09134,ko:K21153,ko:K22205					ko00000,ko01000				Bacteria	1TSR3@1239,3F3JD@33958,4HAW6@91061,COG1912@1,COG1912@2	NA|NA|NA	K	S-adenosyl-l-methionine hydroxide adenosyltransferase
PAPOILPD_01606	390333.Ldb1712	3.3e-245	854.0	Lactobacillaceae	cycA	GO:0001761,GO:0001762,GO:0003333,GO:0003674,GO:0005215,GO:0005326,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015180,GO:0015187,GO:0015238,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015808,GO:0015816,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0022858,GO:0022889,GO:0032328,GO:0032329,GO:0034220,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0042940,GO:0042941,GO:0042942,GO:0042943,GO:0042944,GO:0042945,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903825,GO:1905039		ko:K03293,ko:K11737					ko00000,ko02000	2.A.3.1,2.A.3.1.7		iECO111_1330.ECO111_5093,iECO26_1355.ECO26_5376,iEcHS_1320.EcHS_A4458,iSbBS512_1146.SbBS512_E4749,iYL1228.KPN_04601	Bacteria	1TP97@1239,3F3YD@33958,4H9QX@91061,COG1113@1,COG1113@2	NA|NA|NA	E	Amino acid permease
PAPOILPD_01607	390333.Ldb1713	0.0	1139.4	Lactobacillaceae				ko:K01992		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1U2KS@1239,3F9M9@33958,4IHCQ@91061,COG1277@1,COG1277@2	NA|NA|NA	S	ABC-type transport system involved in multi-copper enzyme maturation permease component
PAPOILPD_01608	390333.Ldb1714	1.2e-166	592.4	Lactobacillaceae	ytrB			ko:K01990		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TPQW@1239,3FC3A@33958,4HA3P@91061,COG1131@1,COG1131@2	NA|NA|NA	V	ABC transporter
PAPOILPD_01609	353496.LBU_1465	1.5e-59	235.3	Lactobacillaceae	ytrA			ko:K07979					ko00000,ko03000				Bacteria	1V9ZC@1239,3F78Z@33958,4HKSY@91061,COG1725@1,COG1725@2	NA|NA|NA	K	helix_turn_helix gluconate operon transcriptional repressor
PAPOILPD_01617	353496.LBU_0785	2.3e-215	754.6	Lactobacillaceae	mgs	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006629,GO:0006643,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046872,GO:0071704,GO:1901576	2.4.1.337	ko:K19002	ko00561,ko01100,map00561,map01100		R10850	RC00005,RC00059	ko00000,ko00001,ko01000,ko01003		GT4		Bacteria	1TPTA@1239,3FC1E@33958,4IPQK@91061,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyl transferase 4-like domain
PAPOILPD_01618	353496.LBU_0786	1.1e-200	705.7	Lactobacillaceae	cpoA	GO:0003674,GO:0003824,GO:0006629,GO:0006643,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901576		ko:K13678			R10865	RC00005,RC00049	ko00000,ko01000,ko01003		GT4		Bacteria	1TPSS@1239,3F47X@33958,4HB9F@91061,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyltransferase, group 1 family protein
PAPOILPD_01619	353496.LBU_0787	9e-176	622.9	Lactobacillaceae	mprF			ko:K07027					ko00000,ko02000	4.D.2			Bacteria	1TR9T@1239,3FBJD@33958,4IQVI@91061,COG0392@1,COG0392@2	NA|NA|NA	S	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PAPOILPD_01620	353496.LBU_0788	0.0	1356.3	Lactobacillaceae	ltaS	GO:0005575,GO:0005576	2.7.8.20	ko:K01138,ko:K19005	ko00561,ko01100,map00561,map01100		R05081,R10849	RC00017	ko00000,ko00001,ko01000				Bacteria	1TRMA@1239,3F3R7@33958,4H9S0@91061,COG1368@1,COG1368@2	NA|NA|NA	M	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
PAPOILPD_01621	353496.LBU_0789	3.1e-23	114.0	Lactobacillaceae	secG	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680		ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2			Bacteria	1VEQR@1239,3F7IQ@33958,4HNKC@91061,COG1314@1,COG1314@2	NA|NA|NA	U	Preprotein translocase
PAPOILPD_01622	390333.Ldb1833	0.0	1490.3	Lactobacillaceae	rnr			ko:K12573,ko:K12585	ko03018,map03018	M00391			ko00000,ko00001,ko00002,ko01000,ko03016,ko03019				Bacteria	1TQ1G@1239,3F4EC@33958,4HBBH@91061,COG0557@1,COG0557@2	NA|NA|NA	J	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
PAPOILPD_01623	353496.LBU_0791	8e-79	299.7	Lactobacillaceae	smpB	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070930,GO:0071704,GO:0097159,GO:1901363,GO:1901564		ko:K03664					ko00000				Bacteria	1V3IJ@1239,3F65B@33958,4HGZX@91061,COG0691@1,COG0691@2	NA|NA|NA	J	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
PAPOILPD_01624	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01625	390333.Ldb0116	1.1e-198	699.1	Lactobacillaceae			2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPDQ@1239,3F49P@33958,4HADW@91061,COG0620@1,COG0620@2	NA|NA|NA	E	methionine synthase, vitamin-B12 independent
PAPOILPD_01626	390333.Ldb0119	1.7e-168	598.6	Lactobacillaceae	glk	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.7.1.2	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R01600,R01786	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS07790	Bacteria	1TPKW@1239,3F4F0@33958,4HBAU@91061,COG1940@1,COG1940@2	NA|NA|NA	G	Glucokinase
PAPOILPD_01627	353496.LBU_0084	1.8e-162	578.6	Lactobacillaceae	ldh		1.1.1.27	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922		R00703,R01000,R03104	RC00031,RC00044	ko00000,ko00001,ko01000,ko04147				Bacteria	1TPSY@1239,3F3RM@33958,4HB0Z@91061,COG0039@1,COG0039@2	NA|NA|NA	C	Belongs to the LDH MDH superfamily. LDH family
PAPOILPD_01628	390333.Ldb0121	4.5e-214	750.4	Lactobacillaceae	naiP												Bacteria	1TQM0@1239,3F3SE@33958,4HATA@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_01629	353496.LBU_0087	1e-31	142.5	Bacteria	ydiN			ko:K03762					ko00000,ko02000	2.A.1.6.4			Bacteria	COG0477@1,COG0477@2,COG1053@1,COG1053@2	NA|NA|NA	C	succinate dehydrogenase
PAPOILPD_01630	353496.LBU_0088	3e-162	577.8	Lactobacillaceae													Bacteria	1TRVX@1239,3F48I@33958,4HFSV@91061,COG0583@1,COG0583@2	NA|NA|NA	K	Transcriptional regulator, LysR family
PAPOILPD_01631	390333.Ldb0125	1.2e-77	295.8	Lactobacillaceae	aroE	GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0030266,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0051287,GO:0052734,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25,1.1.1.282,1.3.5.4	ko:K00014,ko:K00244,ko:K05887	ko00020,ko00190,ko00400,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko02020,map00020,map00190,map00400,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map01230,map02020	M00009,M00011,M00022,M00150,M00173	R01872,R02164,R02413,R06846,R06847	RC00045,RC00154,RC00206	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS14185,iSFxv_1172.SFxv_1929,iS_1188.S1854	Bacteria	1TPAR@1239,3F53U@33958,4HAXN@91061,COG0169@1,COG0169@2,COG1053@1,COG1053@2	NA|NA|NA	C	FAD binding domain
PAPOILPD_01632	1293597.BN147_07545	1.9e-87	328.6	Lactobacillaceae	aroD	GO:0000166,GO:0003674,GO:0003824,GO:0003855,GO:0004764,GO:0005488,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25,4.2.1.10	ko:K03785,ko:K13832	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413,R03084	RC00206,RC00848	ko00000,ko00001,ko00002,ko01000				Bacteria	1TSPN@1239,3F4TX@33958,4HDMG@91061,COG0710@1,COG0710@2	NA|NA|NA	E	Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate
PAPOILPD_01633	1288.SXYLSMQ121_2427	4.5e-49	201.4	Staphylococcaceae													Bacteria	1VX3S@1239,2DWBX@1,33ZIJ@2,4H14A@90964,4IHXM@91061	NA|NA|NA		
PAPOILPD_01635	1293597.BN147_00190	1.5e-256	891.7	Lactobacillaceae				ko:K03758					ko00000,ko02000	2.A.3.2			Bacteria	1TSSB@1239,3F3P5@33958,4HA92@91061,COG0531@1,COG0531@2	NA|NA|NA	E	Arginine ornithine antiporter
PAPOILPD_01636	1293597.BN147_00185	1.9e-220	771.5	Lactobacillaceae	arcA	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006464,GO:0006520,GO:0006525,GO:0006527,GO:0006807,GO:0008150,GO:0008152,GO:0008218,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016020,GO:0016054,GO:0016787,GO:0016810,GO:0016813,GO:0016990,GO:0018101,GO:0018193,GO:0018195,GO:0019538,GO:0019752,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044464,GO:0046395,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	3.5.3.6	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130		R00552	RC00177	ko00000,ko00001,ko01000				Bacteria	1TQWS@1239,3F4VJ@33958,4HCMG@91061,COG2235@1,COG2235@2	NA|NA|NA	E	Arginine
PAPOILPD_01637	1293597.BN147_00180	1.9e-167	595.1	Lactobacillaceae	arcC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008804,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019546,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	2.7.2.2	ko:K00926	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200		R00150,R01395	RC00002,RC00043,RC02803,RC02804	ko00000,ko00001,ko01000				Bacteria	1TP9H@1239,3F3T4@33958,4H9QD@91061,COG0549@1,COG0549@2	NA|NA|NA	E	Belongs to the carbamate kinase family
PAPOILPD_01638	1293597.BN147_00175	8.3e-190	669.5	Lactobacillaceae	argF	GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0033554,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.1.3.3	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	M00029,M00844	R01398	RC00096	ko00000,ko00001,ko00002,ko01000			iAF1260.b0273,iECDH10B_1368.ECDH10B_0261,iECS88_1305.ECS88_4841,iHN637.CLJU_RS12430,iJO1366.b0273,iJR904.b0273,iY75_1357.Y75_RS01410	Bacteria	1TPF2@1239,3F48K@33958,4H9X8@91061,COG0078@1,COG0078@2	NA|NA|NA	E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PAPOILPD_01639	1293597.BN147_00170	1e-159	569.3	Lactobacillaceae				ko:K03413,ko:K07719	ko02020,ko02030,map02020,map02030	M00506,M00518			ko00000,ko00001,ko00002,ko02022,ko02035				Bacteria	1UHR2@1239,3F61D@33958,4HIGR@91061,COG2197@1,COG2197@2	NA|NA|NA	KT	YcbB domain
PAPOILPD_01640	1293597.BN147_00165	1.3e-131	475.7	Lactobacillaceae	XK27_07210		6.1.1.6	ko:K04567	ko00970,map00970	M00359,M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	1TT38@1239,3F4C9@33958,4HCE2@91061,COG3382@1,COG3382@2	NA|NA|NA	S	B3 4 domain
PAPOILPD_01641	1293597.BN147_00160	5e-298	1029.6	Lactobacillaceae													Bacteria	1TQ6G@1239,3F4DW@33958,4HC54@91061,COG1574@1,COG1574@2	NA|NA|NA	S	amidohydrolase
PAPOILPD_01642	353496.LBU_1712	3.8e-149	534.3	Lactobacillaceae													Bacteria	1U59F@1239,29NN9@1,309K7@2,3F59C@33958,4IF0Q@91061	NA|NA|NA		
PAPOILPD_01643	390333.Ldb2091	1.4e-34	151.8	Lactobacillaceae													Bacteria	1U869@1239,29QIX@1,30BIF@2,3FAKK@33958,4II3T@91061	NA|NA|NA		
PAPOILPD_01644	390333.Ldb2092	3.7e-90	337.4	Lactobacillaceae	ymdB												Bacteria	1TPCU@1239,3F6GV@33958,4HIHC@91061,COG2110@1,COG2110@2	NA|NA|NA	S	Macro domain protein
PAPOILPD_01645	390333.Ldb2093	2.4e-144	518.1	Lactobacillaceae	ptp2		3.1.3.48	ko:K01104					ko00000,ko01000				Bacteria	1W78R@1239,3F4QQ@33958,4IEVA@91061,COG2365@1,COG2365@2	NA|NA|NA	T	Tyrosine phosphatase family
PAPOILPD_01646	353496.LBU_1718	5.4e-141	506.9	Lactobacillaceae	ptp2		3.1.3.48	ko:K01104					ko00000,ko01000				Bacteria	1W78R@1239,3F4QQ@33958,4IEVA@91061,COG2365@1,COG2365@2	NA|NA|NA	T	Tyrosine phosphatase family
PAPOILPD_01647	1293597.BN147_03915	7.2e-246	856.3	Lactobacillaceae	glpK	GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615	2.7.1.30	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626		R00847	RC00002,RC00017	ko00000,ko00001,ko01000,ko04147				Bacteria	1TPX3@1239,3F3WI@33958,4H9ZF@91061,COG0554@1,COG0554@2	NA|NA|NA	F	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
PAPOILPD_01648	353496.LBU_1720	1.8e-127	461.8	Lactobacillaceae	cobQ			ko:K07009					ko00000				Bacteria	1U7I9@1239,3F4CH@33958,4HD1P@91061,COG3442@1,COG3442@2	NA|NA|NA	S	glutamine amidotransferase
PAPOILPD_01649	353496.LBU_1721	1.2e-36	158.7	Lactobacillaceae													Bacteria	1VZ0G@1239,2BZQ9@1,3490W@2,3F7PN@33958,4HY72@91061	NA|NA|NA		
PAPOILPD_01650	390333.Ldb2102	0.0	1238.4	Lactobacillaceae	clpL			ko:K04086					ko00000,ko03110				Bacteria	1TRHP@1239,3FC3Z@33958,4HAHZ@91061,COG0542@1,COG0542@2	NA|NA|NA	O	C-terminal, D2-small domain, of ClpB protein
PAPOILPD_01651	353496.LBU_1022	1.2e-63	248.8	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01652	353496.LBU_1051	2.4e-136	491.5	Lactobacillaceae													Bacteria	1VDUD@1239,28NAA@1,2ZBE4@2,3FA14@33958,4HJT9@91061	NA|NA|NA		
PAPOILPD_01654	575605.ACQN01000038_gene1126	8.8e-30	136.7	Lactobacillaceae													Bacteria	1TPAT@1239,3F51D@33958,4HBR3@91061,COG1479@1,COG1479@2	NA|NA|NA	S	Protein of unknown function DUF262
PAPOILPD_01655	390333.Ldb1232	0.0	2119.4	Lactobacillaceae													Bacteria	1TQH0@1239,3F4Z9@33958,4HAQK@91061,COG0553@1,COG0553@2	NA|NA|NA	L	helicase superfamily c-terminal domain
PAPOILPD_01656	390333.Ldb1231	1.8e-97	362.1	Bacilli	tmp1												Bacteria	1UPWW@1239,28XY7@1,2ZJU4@2,4HYD7@91061	NA|NA|NA	S	Domain of unknown function (DUF4391)
PAPOILPD_01657	641112.ACOK01000113_gene2049	2.4e-262	911.4	Ruminococcaceae	mod		2.1.1.72	ko:K07316					ko00000,ko01000,ko02048				Bacteria	1TR8A@1239,249A1@186801,3WGWT@541000,COG2189@1,COG2189@2	NA|NA|NA	L	PFAM DNA methylase
PAPOILPD_01658	796942.HMPREF9623_01740	2.6e-68	265.0	Clostridia	res		3.1.21.5	ko:K01156					ko00000,ko01000,ko02048				Bacteria	1TPRR@1239,2488I@186801,COG3587@1,COG3587@2	NA|NA|NA	L	Type III restriction
PAPOILPD_01659	1293597.BN147_04615	3.9e-212	743.8	Lactobacillaceae													Bacteria	1V9G8@1239,3F6TB@33958,4HVRM@91061,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyl transferases group 1
PAPOILPD_01661	1293597.BN147_04625	1.4e-158	565.5	Lactobacillaceae	cps1D												Bacteria	1U6EG@1239,3F539@33958,4HG4F@91061,COG1442@1,COG1442@2	NA|NA|NA	M	Domain of unknown function (DUF4422)
PAPOILPD_01662	1293597.BN147_04630	4.8e-174	617.1	Lactobacillaceae													Bacteria	1VATJ@1239,3FBZR@33958,4IV2Q@91061,COG1216@1,COG1216@2	NA|NA|NA	S	Glycosyltransferase like family 2
PAPOILPD_01663	1293597.BN147_04635	1.7e-187	661.8	Bacilli													Bacteria	1VV6P@1239,4IT94@91061,COG1216@1,COG1216@2	NA|NA|NA	M	Glycosyl transferase family 2
PAPOILPD_01664	1293597.BN147_04640	1.1e-223	782.3	Lactobacillaceae	cps3F												Bacteria	1VDRM@1239,2DN9M@1,32W9S@2,3F6CA@33958,4HRQ0@91061	NA|NA|NA		
PAPOILPD_01665	1293597.BN147_04645	6.1e-169	600.1	Lactobacillaceae		GO:0003674,GO:0003824,GO:0006629,GO:0006643,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901576	2.4.1.315	ko:K19004	ko00561,ko01100,map00561,map01100		R02689,R04377	RC00005,RC00059	ko00000,ko00001,ko01000,ko01003		GT2		Bacteria	1W2XN@1239,3FAFU@33958,4I0ZS@91061,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyltransferase like family 2
PAPOILPD_01666	1293597.BN147_04650	1.6e-188	665.2	Lactobacillaceae	sacB			ko:K20444					ko00000,ko01000,ko01005,ko02000	4.D.1.3	GT2,GT4		Bacteria	1TPG9@1239,3F683@33958,4HGEP@91061,COG0438@1,COG0438@2	NA|NA|NA	M	Stealth protein CR2, conserved region 2
PAPOILPD_01667	353496.LBU_1022	2.5e-112	411.4	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01669	353496.LBU_0040	7.3e-83	313.2	Lactobacillaceae													Bacteria	1U6KG@1239,3F83H@33958,4IGD9@91061,COG1595@1,COG1595@2	NA|NA|NA	K	DNA-templated transcription, initiation
PAPOILPD_01670	257314.LJ_1019	6.2e-07	61.6	Lactobacillaceae													Bacteria	1U6DR@1239,29PBT@1,30AA0@2,3F7P3@33958,4IG5G@91061	NA|NA|NA		
PAPOILPD_01671	353496.LBU_0038	5.5e-133	480.3	Lactobacillaceae													Bacteria	1U827@1239,2AIHC@1,318Z7@2,3FAFW@33958,4IHZK@91061	NA|NA|NA		
PAPOILPD_01673	97137.C821_01172	7.2e-116	424.1	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TRNY@1239,3F55P@33958,4HBKP@91061,COG0675@1,COG0675@2	NA|NA|NA	L	transposase, IS605 OrfB family
PAPOILPD_01674	500635.MITSMUL_03299	1.2e-34	152.9	Negativicutes	tlpA2			ko:K07491					ko00000				Bacteria	1TSQ0@1239,4H5NK@909932,COG1943@1,COG1943@2	NA|NA|NA	L	COGs COG1943 Transposase and inactivated derivatives
PAPOILPD_01675	1293597.BN147_00460	1.7e-102	378.6	Lactobacillaceae	scrK		2.7.1.2,2.7.1.4	ko:K00845,ko:K00847	ko00010,ko00051,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00051,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R00760,R00867,R01600,R01786,R03920	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQU4@1239,3F3K8@33958,4HA1C@91061,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
PAPOILPD_01676	1293597.BN147_00460	4.8e-38	163.7	Lactobacillaceae	scrK		2.7.1.2,2.7.1.4	ko:K00845,ko:K00847	ko00010,ko00051,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00051,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R00760,R00867,R01600,R01786,R03920	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQU4@1239,3F3K8@33958,4HA1C@91061,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
PAPOILPD_01677	353496.LBU_0034	2e-188	664.8	Lactobacillaceae	manA		5.3.1.8	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	M00114	R01819	RC00376	ko00000,ko00001,ko00002,ko01000				Bacteria	1VRGI@1239,3F40I@33958,4HBFW@91061,COG1482@1,COG1482@2	NA|NA|NA	G	mannose-6-phosphate isomerase
PAPOILPD_01678	353496.LBU_0033	1.2e-24	118.2	Bacteria	bgl		3.2.1.21,3.2.1.86	ko:K01223,ko:K05350	ko00010,ko00460,ko00500,ko00940,ko01100,ko01110,map00010,map00460,map00500,map00940,map01100,map01110		R00026,R00839,R02558,R02887,R02985,R03527,R04949,R04998,R05133,R05134,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000		GT1		Bacteria	COG2723@1,COG2723@2	NA|NA|NA	G	beta-glucosidase activity
PAPOILPD_01684	1215915.BN193_05825	2.2e-106	392.5	Lactococcus			3.1.21.3	ko:K01154					ko00000,ko01000,ko02048				Bacteria	1TP5N@1239,1YCB0@1357,4I4FS@91061,COG0732@1,COG0732@2	NA|NA|NA	V	Type I restriction modification DNA specificity domain
PAPOILPD_01685	1423743.JCM14108_3042	9.3e-87	328.2	Lactobacillaceae			3.6.4.12	ko:K02314,ko:K02316,ko:K17680	ko03030,ko04112,map03030,map04112				ko00000,ko00001,ko01000,ko03029,ko03032				Bacteria	1V1I5@1239,3F7KN@33958,4IG43@91061,COG0305@1,COG0305@2,COG0358@1,COG0358@2	NA|NA|NA	L	DnaB-like helicase C terminal domain
PAPOILPD_01686	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01687	1035184.HMPREF1042_1257	5.3e-43	180.6	Bacilli			4.1.1.86	ko:K13745	ko00260,ko01120,map00260,map01120		R07650	RC00299	ko00000,ko00001,ko01000				Bacteria	1TSK0@1239,4HEW5@91061,COG0076@1,COG0076@2	NA|NA|NA	E	Pyridoxal-dependent decarboxylase conserved domain
PAPOILPD_01688	353496.LBU_1022	2.2e-201	708.0	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01689	353496.LBU_1250	0.0	1573.1	Lactobacillaceae	pepX		3.4.14.11	ko:K01281					ko00000,ko01000,ko01002				Bacteria	1TT78@1239,3F44E@33958,4HBA0@91061,COG2936@1,COG2936@2	NA|NA|NA	E	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
PAPOILPD_01690	353496.LBU_1251	3.3e-44	184.5	Lactobacillaceae				ko:K18926		M00715			ko00000,ko00002,ko02000	2.A.1.3.30			Bacteria	1UYQB@1239,3F3NG@33958,4HE3Y@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_01691	390333.Ldb1456	7.3e-82	310.1	Lactobacillaceae				ko:K18926		M00715			ko00000,ko00002,ko02000	2.A.1.3.30			Bacteria	1UYQB@1239,3F3NG@33958,4HE3Y@91061,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
PAPOILPD_01692	353496.LBU_1252	2.1e-148	531.6	Lactobacillaceae	metAA	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0008899,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016750,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.46	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	M00017	R01777	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS11970	Bacteria	1TQVR@1239,3F5CA@33958,4H9W4@91061,COG1897@1,COG1897@2	NA|NA|NA	E	Transfers an acetyl group from acetyl-CoA to
PAPOILPD_01693	390333.Ldb1458	3.5e-129	467.6	Lactobacillaceae	cysK	GO:0000096,GO:0000097,GO:0000098,GO:0003674,GO:0003824,GO:0004122,GO:0004124,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009087,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016740,GO:0016765,GO:0016829,GO:0016835,GO:0016836,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0032991,GO:0032993,GO:0036094,GO:0042127,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043388,GO:0043436,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046395,GO:0046983,GO:0048037,GO:0048518,GO:0048522,GO:0050662,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051101,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051291,GO:0065003,GO:0065007,GO:0065009,GO:0070279,GO:0071704,GO:0071840,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1904796,GO:1904798,GO:2000677,GO:2000679	2.5.1.47	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R03601,R04859	RC00020,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP30@1239,3F4VD@33958,4HAMU@91061,COG0031@1,COG0031@2	NA|NA|NA	E	Belongs to the cysteine synthase cystathionine beta- synthase family
PAPOILPD_01694	390333.Ldb2123	1.1e-226	792.3	Lactobacillaceae	pts13C			ko:K02761	ko00500,ko02060,map00500,map02060	M00275	R11170,R11172	RC00017,RC03206	ko00000,ko00001,ko00002,ko02000	4.A.3.2			Bacteria	1V5SI@1239,3F3Z5@33958,4HJTK@91061,COG1455@1,COG1455@2	NA|NA|NA	G	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
PAPOILPD_01695	353496.LBU_1737	5.1e-159	567.0	Lactobacillaceae													Bacteria	1V8NG@1239,3F41V@33958,4HJ22@91061,COG4814@1,COG4814@2	NA|NA|NA	S	Alpha/beta hydrolase of unknown function (DUF915)
PAPOILPD_01696	353496.LBU_1736	1.2e-146	525.8	Lactobacillaceae													Bacteria	1U68T@1239,3F7BP@33958,4IFZY@91061,COG0561@1,COG0561@2	NA|NA|NA	S	Sucrose-6F-phosphate phosphohydrolase
PAPOILPD_01697	353496.LBU_1735	4e-50	203.8	Lactobacillaceae	puuD			ko:K07010					ko00000,ko01002				Bacteria	1V1KC@1239,3F4PK@33958,4HI59@91061,COG2071@1,COG2071@2	NA|NA|NA	S	peptidase C26
PAPOILPD_01698	353496.LBU_1735	6.5e-78	296.6	Lactobacillaceae	puuD			ko:K07010					ko00000,ko01002				Bacteria	1V1KC@1239,3F4PK@33958,4HI59@91061,COG2071@1,COG2071@2	NA|NA|NA	S	peptidase C26
PAPOILPD_01699	353496.LBU_1734	1.1e-122	446.0	Lactobacillaceae	yicL												Bacteria	1TR6G@1239,3F5NA@33958,4HAMD@91061,COG0697@1,COG0697@2	NA|NA|NA	EG	EamA-like transporter family
PAPOILPD_01700	1423748.BALB01000017_gene1490	3.3e-08	63.5	Lactobacillaceae				ko:K07483					ko00000				Bacteria	1U6UP@1239,3F8IG@33958,4IGNH@91061,COG2963@1,COG2963@2	NA|NA|NA	L	transposase activity
PAPOILPD_01701	405566.lhv_0576	1.5e-30	138.3	Lactobacillaceae	tnp2												Bacteria	1TQ93@1239,3F4RB@33958,4HC0Q@91061,COG3464@1,COG3464@2	NA|NA|NA	L	PFAM Transposase, IS204 IS1001 IS1096 IS1165
PAPOILPD_01703	565653.EGBG_02353	4.6e-20	105.5	Enterococcaceae				ko:K06919					ko00000				Bacteria	1VJU9@1239,4B2J3@81852,4HQHR@91061,COG3378@1,COG3378@2	NA|NA|NA	S	Primase alpha helix C-terminal domain protein
PAPOILPD_01707	1423743.JCM14108_3045	1.4e-54	219.9	Lactobacillaceae				ko:K03496					ko00000,ko03036,ko04812				Bacteria	1TP8S@1239,3F9XU@33958,4HAYM@91061,COG1192@1,COG1192@2	NA|NA|NA	D	Cellulose biosynthesis protein BcsQ
PAPOILPD_01708	1033837.WANG_p1073	1.4e-56	226.9	Lactobacillaceae	xerC			ko:K03733,ko:K04763					ko00000,ko03036				Bacteria	1V98H@1239,3F5YH@33958,4HM0P@91061,COG4974@1,COG4974@2	NA|NA|NA	L	Phage integrase, N-terminal SAM-like domain
PAPOILPD_01709	314315.LCA_0595	3.6e-57	229.2	Lactobacillaceae				ko:K06919					ko00000				Bacteria	1UYQ2@1239,3FBJ7@33958,4IQUT@91061,COG3378@1,COG3378@2	NA|NA|NA	S	D5 N terminal like
PAPOILPD_01710	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01711	353496.LBU_1688	2.4e-116	424.9	Lactobacillaceae	devA		3.6.3.25	ko:K02003,ko:K06020,ko:K09810	ko02010,map02010	M00255,M00258			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.125			Bacteria	1TQP5@1239,3F4RP@33958,4HBXK@91061,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_01712	353496.LBU_1689	4.5e-186	657.1	Lactobacillaceae	hrtB			ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TWFZ@1239,3F3K5@33958,4H9RQ@91061,COG0577@1,COG0577@2	NA|NA|NA	V	ABC transporter permease
PAPOILPD_01713	390333.Ldb2071	2.2e-85	321.6	Lactobacillaceae	ygfC												Bacteria	1VXZV@1239,3FCEI@33958,4HXIZ@91061,COG1309@1,COG1309@2	NA|NA|NA	K	transcriptional regulator (TetR family)
PAPOILPD_01714	1293597.BN147_00235	1.7e-249	868.2	Lactobacillaceae	glcD2		1.1.3.15	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130		R00475	RC00042	ko00000,ko00001,ko01000				Bacteria	1TPBC@1239,3F4AD@33958,4H9UU@91061,COG0277@1,COG0277@2	NA|NA|NA	C	FAD linked oxidases, C-terminal domain
PAPOILPD_01715	390333.Ldb2075	9.6e-135	486.1	Lactobacillaceae				ko:K09861					ko00000				Bacteria	1TR33@1239,3F4KR@33958,4HFN2@91061,COG3022@1,COG3022@2	NA|NA|NA	S	Belongs to the UPF0246 family
PAPOILPD_01716	353496.LBU_1695	1e-116	426.0	Lactobacillaceae													Bacteria	1U59M@1239,2CBCD@1,309KB@2,3F5A8@33958,4IF11@91061	NA|NA|NA		
PAPOILPD_01717	353496.LBU_1696	9.9e-187	659.4	Lactobacillaceae													Bacteria	1TQMA@1239,3F3QW@33958,4HDTN@91061,COG1376@1,COG1376@2	NA|NA|NA	S	Putative peptidoglycan binding domain
PAPOILPD_01718	796942.HMPREF9623_01740	0.0	1268.8	Clostridia	res		3.1.21.5	ko:K01156					ko00000,ko01000,ko02048				Bacteria	1TPRR@1239,2488I@186801,COG3587@1,COG3587@2	NA|NA|NA	L	Type III restriction
PAPOILPD_01719	390333.Ldb1226	3.8e-54	217.2	Lactobacillaceae													Bacteria	1U7WA@1239,2BN37@1,32GPV@2,3FA95@33958,4IHTP@91061	NA|NA|NA		
PAPOILPD_01720	353496.LBU_1043	5.8e-53	213.4	Firmicutes													Bacteria	1UHBN@1239,COG5421@1,COG5421@2	NA|NA|NA	L	Psort location Cytoplasmic, score
PAPOILPD_01721	353496.LBU_1041	5.8e-125	454.1	Lactobacillaceae	ogt		2.1.1.63	ko:K00567					ko00000,ko01000,ko03400				Bacteria	1VA03@1239,3FC2Q@33958,4HKC0@91061,COG0350@1,COG0350@2	NA|NA|NA	L	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PAPOILPD_01722	1280681.AUJZ01000004_gene2842	1.7e-105	389.8	Butyrivibrio													Bacteria	1UTR4@1239,24CFF@186801,4BYWZ@830,COG3385@1,COG3385@2	NA|NA|NA	L	Transposase DDE domain
PAPOILPD_01723	353496.LBU_0688	1.4e-09	67.4	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01724	1293597.BN147_01925	0.0	1152.5	Lactobacillaceae	mycA	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005504,GO:0005515,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0008289,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0031406,GO:0032787,GO:0033293,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0046983,GO:0048037,GO:0050151,GO:0050660,GO:0050662,GO:0071704,GO:0071949,GO:0097159,GO:1901265,GO:1901363	4.2.1.53	ko:K10254					ko00000,ko01000				Bacteria	1TQZ6@1239,3F3QX@33958,4HAYH@91061,COG4716@1,COG4716@2	NA|NA|NA	S	Myosin-crossreactive antigen
PAPOILPD_01725	1293597.BN147_01945	9.6e-17	92.8	Lactobacillaceae	yxjG		2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPDQ@1239,3F49P@33958,4HADW@91061,COG0620@1,COG0620@2	NA|NA|NA	E	methionine synthase, vitamin-B12 independent
PAPOILPD_01726	1293597.BN147_01945	2.7e-135	488.0	Lactobacillaceae	yxjG		2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPDQ@1239,3F49P@33958,4HADW@91061,COG0620@1,COG0620@2	NA|NA|NA	E	methionine synthase, vitamin-B12 independent
PAPOILPD_01727	1293597.BN147_01950	3.5e-150	537.7	Lactobacillaceae	degV												Bacteria	1V289@1239,3F4D9@33958,4I3AR@91061,COG1307@1,COG1307@2	NA|NA|NA	S	DegV family
PAPOILPD_01728	353496.LBU_1257	2.9e-57	227.6	Lactobacillaceae													Bacteria	1VGQU@1239,330YI@2,3F80I@33958,4IGBG@91061,arCOG12654@1	NA|NA|NA		
PAPOILPD_01729	1293597.BN147_00420	3.2e-43	181.0	Lactobacillaceae	lacF		2.7.1.196,2.7.1.205,2.7.1.207	ko:K02759,ko:K02786	ko00052,ko00500,ko01100,ko02060,map00052,map00500,map01100,map02060	M00275,M00281	R04393,R11170,R11172	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.3.1,4.A.3.2			Bacteria	1V9Z6@1239,3F7Q7@33958,4HKFE@91061,COG1447@1,COG1447@2	NA|NA|NA	G	PTS system, Lactose/Cellobiose specific IIA subunit
PAPOILPD_01730	1293597.BN147_00365	3.1e-139	501.5	Lactobacillaceae	galM		5.1.3.3	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	M00632	R01602,R10619	RC00563	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQGJ@1239,3F48R@33958,4HADZ@91061,COG2017@1,COG2017@2	NA|NA|NA	G	Catalyzes the interconversion of alpha and beta anomers of maltose
PAPOILPD_01731	1293597.BN147_00370	1.5e-190	672.2	Lactobacillaceae	galK	GO:0005975,GO:0005996,GO:0006012,GO:0008150,GO:0008152,GO:0019318,GO:0044238,GO:0044281,GO:0071704	2.7.1.6	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00554,M00632	R01092	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1TPD0@1239,3F3Q9@33958,4HARP@91061,COG0153@1,COG0153@2	NA|NA|NA	F	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
PAPOILPD_01732	1293597.BN147_00375	5.2e-225	786.9	Lactobacillaceae	galT		2.7.7.12	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	M00362,M00554,M00632	R00955	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPBN@1239,3F4D8@33958,4HAYJ@91061,COG4468@1,COG4468@2	NA|NA|NA	G	UDP-glucose--hexose-1-phosphate uridylyltransferase
PAPOILPD_01733	353496.LBU_1492	1.7e-246	858.2	Lactobacillaceae	aspA		4.2.1.2,4.3.1.1	ko:K01679,ko:K01744	ko00020,ko00250,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00250,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	M00009,M00011,M00173,M00376	R00490,R01082	RC00316,RC00443,RC02799	ko00000,ko00001,ko00002,ko01000				Bacteria	1TP3U@1239,3FBTC@33958,4HFM9@91061,COG1027@1,COG1027@2	NA|NA|NA	E	Fumarase C C-terminus
PAPOILPD_01734	353496.LBU_1038	3e-122	444.5	Lactobacillaceae	trmK	GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016426,GO:0016429,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.217	ko:K06967					ko00000,ko01000,ko03016				Bacteria	1V3I4@1239,3F4GT@33958,4HHIM@91061,COG2384@1,COG2384@2	NA|NA|NA	S	SAM-dependent methyltransferase
PAPOILPD_01735	390333.Ldb1218	3.2e-152	544.3	Lactobacillaceae	yqfO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.5.4.16	ko:K22391	ko00790,ko01100,map00790,map01100	M00126	R00428,R04639,R05046,R05048	RC00263,RC00294,RC00323,RC00945,RC01188	ko00000,ko00001,ko00002,ko01000				Bacteria	1TQ27@1239,3F3ZD@33958,4H9NY@91061,COG0327@1,COG0327@2	NA|NA|NA	S	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PAPOILPD_01736	390333.Ldb1217	1.6e-243	848.2	Lactobacillaceae	pepT	GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0034701,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045148,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.11.4	ko:K01258					ko00000,ko01000,ko01002				Bacteria	1TP3A@1239,3F45V@33958,4HAZE@91061,COG2195@1,COG2195@2	NA|NA|NA	E	Cleaves the N-terminal amino acid of tripeptides
PAPOILPD_01737	1033837.WANG_0286	1.3e-61	242.7	Lactobacillaceae				ko:K07497					ko00000				Bacteria	1TQQY@1239,3FCFA@33958,4HC8M@91061,COG2801@1,COG2801@2	NA|NA|NA	L	COG2963 Transposase and inactivated derivatives
PAPOILPD_01738	390333.Ldb1987	0.0	1109.4	Lactobacillaceae													Bacteria	1UHBN@1239,3F9JN@33958,4IRVC@91061,COG5421@1,COG5421@2	NA|NA|NA	L	Transposase DDE domain
PAPOILPD_01739	405566.lhv_1171	2.2e-229	801.2	Lactobacillaceae	amd		3.5.1.47	ko:K01436,ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	M00525	R02733	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000,ko01002				Bacteria	1TPD7@1239,3FC42@33958,4H9WQ@91061,COG1473@1,COG1473@2	NA|NA|NA	E	Peptidase family M20/M25/M40
PAPOILPD_01740	326425.lhe_1069	1.3e-91	342.8	Lactobacillaceae	steT	GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039		ko:K03294					ko00000	2.A.3.2			Bacteria	1TQ48@1239,3F3YJ@33958,4HBGT@91061,COG0531@1,COG0531@2	NA|NA|NA	E	amino acid
PAPOILPD_01741	1423748.BALB01000038_gene2002	3.1e-37	160.6	Lactobacillaceae	pdxH			ko:K07006					ko00000				Bacteria	1VW4G@1239,3F6IW@33958,4HW37@91061,COG3576@1,COG3576@2	NA|NA|NA	S	Pyridoxamine 5'-phosphate oxidase
PAPOILPD_01743	353496.LBU_0204	5.3e-242	843.2	Lactobacillaceae	tyrS	GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.1	ko:K01866	ko00970,map00970	M00359,M00360	R02918	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029			iAF1260.b1637,iBWG_1329.BWG_1452,iECDH10B_1368.ECDH10B_1771,iECDH1ME8569_1439.ECDH1ME8569_1581,iECH74115_1262.ECH74115_2349,iECIAI39_1322.ECIAI39_1418,iECNA114_1301.ECNA114_1685,iECO103_1326.ECO103_1778,iECO111_1330.ECO111_2107,iECO26_1355.ECO26_2366,iECSE_1348.ECSE_1760,iECSF_1327.ECSF_1500,iECSP_1301.ECSP_2202,iECUMN_1333.ECUMN_1928,iECW_1372.ECW_m1805,iECs_1301.ECs2346,iEKO11_1354.EKO11_2137,iETEC_1333.ETEC_1672,iEcDH1_1363.EcDH1_2003,iEcE24377_1341.EcE24377A_1847,iEcHS_1320.EcHS_A1713,iEcSMS35_1347.EcSMS35_1562,iEcolC_1368.EcolC_1992,iJO1366.b1637,iSFV_1184.SFV_1654,iSF_1195.SF1662,iSSON_1240.SSON_1519,iSbBS512_1146.SbBS512_E1829,iUMNK88_1353.UMNK88_2097,iWFL_1372.ECW_m1805,iY75_1357.Y75_RS08585	Bacteria	1TPGN@1239,3F48J@33958,4H9YV@91061,COG0162@1,COG0162@2	NA|NA|NA	J	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PAPOILPD_01744	1423758.BN55_07375	3.8e-29	135.6	Lactobacillaceae													Bacteria	1V0QX@1239,3F60P@33958,4HFH3@91061,COG3274@1,COG3274@2	NA|NA|NA	S	Acyltransferase family
PAPOILPD_01746	353496.LBU_1024	1.5e-111	409.5	Lactobacillaceae	galR			ko:K02529					ko00000,ko03000				Bacteria	1TPZJ@1239,3F3PB@33958,4HC9Z@91061,COG1609@1,COG1609@2	NA|NA|NA	K	Transcriptional regulator
PAPOILPD_01747	390333.Ldb1201	0.0	1968.0	Lactobacillaceae	lacL		3.2.1.23	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100		R01105,R01678,R03355,R04783,R06114	RC00049,RC00452	ko00000,ko00001,ko01000				Bacteria	1TPDC@1239,3F4EI@33958,4HANW@91061,COG3250@1,COG3250@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 2 family
PAPOILPD_01748	353496.LBU_1027	0.0	1159.4	Lactobacillaceae	lacS	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03292,ko:K11104,ko:K16209					ko00000,ko02000	2.A.2,2.A.2.1,2.A.2.2			Bacteria	1TRA5@1239,3F3P7@33958,4HCDS@91061,COG2190@1,COG2190@2,COG2211@1,COG2211@2	NA|NA|NA	G	Transporter
PAPOILPD_01749	1293597.BN147_02070	7.4e-99	367.1	Lactobacillaceae	lysR7												Bacteria	1V09D@1239,3F6R1@33958,4IQPY@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_01750	1293597.BN147_02075	2.3e-85	322.4	Lactobacillaceae	lysR7												Bacteria	1UXP9@1239,3F77K@33958,4IFX8@91061,COG0583@1,COG0583@2	NA|NA|NA	K	Bacterial regulatory helix-turn-helix protein, lysR family
PAPOILPD_01751	353496.LBU_0738	2.3e-69	268.1	Lactobacillaceae													Bacteria	1U7RH@1239,29Q9Y@1,30B92@2,3FA2G@33958,4IHNU@91061	NA|NA|NA		
PAPOILPD_01752	353496.LBU_0737	0.0	1469.5	Lactobacillaceae				ko:K06131,ko:K06915	ko00564,ko01100,map00564,map01100		R07390	RC00017	ko00000,ko00001,ko01000				Bacteria	1V3AR@1239,3F5UT@33958,4ISZR@91061,COG1502@1,COG1502@2	NA|NA|NA	I	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAPOILPD_01753	353496.LBU_0736	6.7e-13	79.3	Lactobacillaceae													Bacteria	1U8JW@1239,2BUXX@1,32QA9@2,3FB29@33958,4IIHV@91061	NA|NA|NA		
PAPOILPD_01754	353496.LBU_0735	4.5e-110	404.4	Bacteria				ko:K13928					ko00000,ko03000				Bacteria	COG0583@1,COG0583@2	NA|NA|NA	K	DNA-binding transcription factor activity
PAPOILPD_01755	390333.Ldb0807	1.2e-219	768.8	Lactobacillaceae													Bacteria	1TPS5@1239,3F4AH@33958,4H9M3@91061,COG1167@1,COG1167@2	NA|NA|NA	EK	Aminotransferase, class I
PAPOILPD_01756	390333.Ldb0808	3.4e-166	590.9	Bacilli													Bacteria	1V275@1239,4IQPS@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_01757	390333.Ldb0809	0.0	1111.7	Lactobacillaceae	argS	GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.19	ko:K01887	ko00970,map00970	M00359,M00360	R03646	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029				Bacteria	1TPEZ@1239,3F4DE@33958,4HAR3@91061,COG0018@1,COG0018@2	NA|NA|NA	J	Arginyl-tRNA synthetase
PAPOILPD_01758	353496.LBU_0693	3.8e-76	290.8	Lactobacillaceae	argR	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141		ko:K03402					ko00000,ko03000				Bacteria	1VA3U@1239,3F65K@33958,4HPCQ@91061,COG1438@1,COG1438@2	NA|NA|NA	K	Regulates arginine biosynthesis genes
PAPOILPD_01759	353496.LBU_0694	4.7e-216	756.9	Lactobacillaceae	coaBC		4.1.1.36,6.3.2.5	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	M00120	R03269,R04231	RC00064,RC00090,RC00822	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPP3@1239,3F3XX@33958,4HAK8@91061,COG0452@1,COG0452@2	NA|NA|NA	H	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PAPOILPD_01760	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01761	353496.LBU_0080	1.2e-163	582.4	Lactobacillaceae	cpsY												Bacteria	1TP3E@1239,3F4VM@33958,4HC5J@91061,COG0583@1,COG0583@2	NA|NA|NA	K	Transcriptional regulator, LysR family
PAPOILPD_01762	353496.LBU_0079	9.2e-127	459.5	Lactobacillaceae													Bacteria	1U7HJ@1239,2BINI@1,32CVM@2,3F9PZ@33958,4IHE7@91061	NA|NA|NA		
PAPOILPD_01763	353496.LBU_0078	0.0	1179.9	Lactobacillaceae	mutS2	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391		ko:K07456	ko03430,map03430				ko00000,ko00001,ko03400				Bacteria	1TQWB@1239,3F47G@33958,4HAHW@91061,COG1193@1,COG1193@2	NA|NA|NA	L	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
PAPOILPD_01764	353496.LBU_0076	1.7e-188	665.2	Lactobacillaceae													Bacteria	1TSRV@1239,3F46B@33958,4HCIZ@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC-type multidrug transport system, ATPase and permease components
PAPOILPD_01765	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01766	390333.Ldb2027	2.6e-78	298.1	Lactobacillaceae													Bacteria	1UFZH@1239,29V33@1,30GGE@2,3F5BQ@33958,4IF1H@91061	NA|NA|NA		
PAPOILPD_01767	353496.LBU_1642	2.2e-108	398.3	Lactobacillaceae													Bacteria	1U55V@1239,29DQI@1,300NC@2,3F4UQ@33958,4IEX6@91061	NA|NA|NA		
PAPOILPD_01768	353496.LBU_1641	3.3e-286	990.3	Lactobacillaceae													Bacteria	1V7RP@1239,2EZVI@1,33T01@2,3F4QD@33958,4IEWB@91061	NA|NA|NA	S	O-antigen ligase like membrane protein
PAPOILPD_01769	353496.LBU_1640	6.2e-41	173.3	Lactobacillaceae													Bacteria	1U6CF@1239,2DKPT@1,30A91@2,3F7KP@33958,4IG44@91061	NA|NA|NA		
PAPOILPD_01770	353496.LBU_1639	1.4e-95	355.5	Lactobacillaceae	gmk2		2.7.4.8	ko:K00942	ko00230,ko01100,map00230,map01100	M00050	R00332,R02090	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	1VGNR@1239,3FBPU@33958,4IRT6@91061,COG0194@1,COG0194@2	NA|NA|NA	F	Guanylate kinase homologues.
PAPOILPD_01771	353496.LBU_1638	4e-81	307.4	Lactobacillaceae				ko:K21471					ko00000,ko01000,ko01002,ko01011				Bacteria	1V9ZW@1239,3F6NS@33958,4HH84@91061,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC P60 family
PAPOILPD_01772	353496.LBU_1637	3.3e-197	694.1	Lactobacillaceae	ldhA		1.1.1.28	ko:K03778	ko00620,ko01120,map00620,map01120		R00704	RC00044	ko00000,ko00001,ko01000				Bacteria	1TSZ6@1239,3FB6E@33958,4HBWS@91061,COG1052@1,COG1052@2	NA|NA|NA	CH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAPOILPD_01773	390333.Ldb0276	3.5e-254	884.0	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01775	1293597.BN147_08935	5.1e-46	190.3	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01776	1293597.BN147_08935	1.3e-17	94.7	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01777	390333.Ldb0281	7.3e-300	1035.8	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F5SJ@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter
PAPOILPD_01778	353496.LBU_0885	5.6e-89	333.6	Lactobacillaceae													Bacteria	1UYXM@1239,3F8C2@33958,4HD96@91061,COG0778@1,COG0778@2	NA|NA|NA	C	Nitroreductase family
PAPOILPD_01779	1122152.AUEI01000007_gene216	1.7e-07	60.8	Lactobacillaceae	XK27_06780			ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	1TPHU@1239,3F4HF@33958,4HA2C@91061,COG0577@1,COG0577@2	NA|NA|NA	V	ABC transporter permease
PAPOILPD_01780	353496.LBU_0883	3.7e-111	407.5	Lactobacillaceae			3.1.3.73	ko:K02226	ko00860,ko01100,map00860,map01100	M00122	R04594,R11173	RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	1V6ES@1239,3F5SD@33958,4HGZI@91061,COG0406@1,COG0406@2	NA|NA|NA	G	phosphoglycerate mutase
PAPOILPD_01781	353496.LBU_0882	6.5e-180	636.7	Lactobacillaceae	serC	GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.6.1.52	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	M00020,M00124	R04173,R05085	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	1TP6Y@1239,3F4IU@33958,4HATT@91061,COG1932@1,COG1932@2	NA|NA|NA	E	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PAPOILPD_01782	1293597.BN147_08020	2.7e-192	677.9	Lactobacillaceae	serA		1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	1V410@1239,3F4JJ@33958,4H9PH@91061,COG0111@1,COG0111@2	NA|NA|NA	EH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAPOILPD_01783	353496.LBU_0879	3.2e-164	584.3	Lactobacillaceae													Bacteria	1TR6G@1239,3F423@33958,4HAMD@91061,COG0697@1,COG0697@2	NA|NA|NA	EG	EamA-like transporter family
PAPOILPD_01784	353496.LBU_1055	0.0	1308.1	Firmicutes													Bacteria	1UJNX@1239,COG0210@1,COG0210@2	NA|NA|NA	L	DNA helicase
PAPOILPD_01785	1293597.BN147_09985	2.7e-29	134.0	Lactobacillaceae				ko:K03319					ko00000	2.A.47			Bacteria	1TSGE@1239,3F4RH@33958,4HDE4@91061,COG0471@1,COG0471@2	NA|NA|NA	P	Sodium:sulfate symporter transmembrane region
PAPOILPD_01786	1293597.BN147_09995	1.3e-13	81.3	Lactobacillaceae													Bacteria	1V5VW@1239,3F5D2@33958,4HHDY@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR family
PAPOILPD_01787	353496.LBU_1740	2.5e-23	114.0	Lactobacillaceae													Bacteria	1V5VW@1239,3F5D2@33958,4HHDY@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR family
PAPOILPD_01788	353496.LBU_1741	8.3e-76	289.7	Lactobacillaceae	ribH	GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.78	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R04457	RC00960	ko00000,ko00001,ko00002,ko01000			iLJ478.TM1825,iSB619.SA_RS08940,iSFV_1184.SFV_0380	Bacteria	1V1DA@1239,3F70X@33958,4HFRA@91061,COG0054@1,COG0054@2	NA|NA|NA	H	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin
PAPOILPD_01789	353496.LBU_1742	2.8e-192	677.9	Lactobacillaceae	ribBA	GO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	3.5.4.25,4.1.99.12	ko:K02858,ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	M00125,M00840	R00425,R07281	RC00293,RC01792,RC01815,RC02504	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS10830,iSB619.SA_RS08945	Bacteria	1TPH9@1239,3F4EB@33958,4H9PW@91061,COG0108@1,COG0108@2,COG0807@1,COG0807@2	NA|NA|NA	H	Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate
PAPOILPD_01790	1293597.BN147_01115	3.2e-67	261.5	Lactobacillaceae	ribE	GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.9,3.5.4.25,4.1.99.12	ko:K00793,ko:K02858,ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	M00125,M00840	R00066,R00425,R07281	RC00293,RC00958,RC00960,RC01792,RC01815,RC02504	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS08950,iYO844.BSU23270	Bacteria	1V1EP@1239,3F6M0@33958,4HC7B@91061,COG0307@1,COG0307@2	NA|NA|NA	H	Riboflavin synthase
PAPOILPD_01791	1293597.BN147_01110	5.2e-76	291.2	Lactobacillaceae	ribD	GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360	1.1.1.193,3.5.4.26	ko:K00082,ko:K01498,ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1624,iLJ478.TM1828	Bacteria	1TP4F@1239,3F4X5@33958,4HBNA@91061,COG0117@1,COG0117@2,COG1985@1,COG1985@2	NA|NA|NA	H	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PAPOILPD_01792	334390.LAF_0776	5.2e-17	93.6	Lactobacillaceae	ribD	GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360	1.1.1.193,3.5.4.26	ko:K00082,ko:K01498,ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1624,iLJ478.TM1828	Bacteria	1TP4F@1239,3F4X5@33958,4HBNA@91061,COG0117@1,COG0117@2,COG1985@1,COG1985@2	NA|NA|NA	H	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PAPOILPD_01793	2754.EH55_00485	6e-49	199.9	Synergistetes	yphJ		4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220		R03470	RC00938	ko00000,ko00001,ko01000				Bacteria	3TBAX@508458,COG0599@1,COG0599@2,COG1917@1,COG1917@2	NA|NA|NA	S	Cupin domain
PAPOILPD_01795	1449050.JNLE01000003_gene648	2.8e-16	92.4	Clostridia													Bacteria	1W2CJ@1239,24V48@186801,2DDH7@1,2ZI32@2	NA|NA|NA		
PAPOILPD_01796	1133569.AHYZ01000136_gene1608	2.6e-161	575.1	Lactobacillaceae	trpB	GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.1.20	ko:K01696	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPI3@1239,3F4DT@33958,4H9WC@91061,COG0133@1,COG0133@2	NA|NA|NA	E	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
PAPOILPD_01797	767029.HMPREF9154_1815	1.1e-66	259.6	Actinobacteria													Bacteria	2IJXM@201174,COG2852@1,COG2852@2	NA|NA|NA	S	Protein conserved in bacteria
PAPOILPD_01798	353496.LBU_0894	7.2e-97	360.5	Lactobacillaceae													Bacteria	1UJSC@1239,3F4ZZ@33958,4HCVT@91061,COG0702@1,COG0702@2	NA|NA|NA	GM	NmrA-like family
PAPOILPD_01799	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01801	478749.BRYFOR_06409	5.4e-48	198.4	Clostridia													Bacteria	1VATJ@1239,24H9J@186801,COG1216@1,COG1216@2	NA|NA|NA	M	Glycosyltransferase, group 2 family protein
PAPOILPD_01802	585524.HMPREF0493_0581	1.1e-20	105.5	Lactobacillaceae				ko:K07493					ko00000				Bacteria	1TP4C@1239,3F4RA@33958,4HAXJ@91061,COG3328@1,COG3328@2	NA|NA|NA	L	Transposase
PAPOILPD_01803	1291743.LOSG293_120190	2.2e-119	436.0	Lactobacillaceae													Bacteria	1TP7R@1239,3F48Q@33958,4HC84@91061,COG2244@1,COG2244@2	NA|NA|NA	S	Membrane protein involved in the export of O-antigen and teichoic acid
PAPOILPD_01804	862969.SCI_1171	0.0	1357.0	Streptococcus anginosus group			6.1.1.13	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	M00725	R02718	RC00037,RC00094	ko00000,ko00001,ko00002,ko01000,ko01504				Bacteria	1TPTH@1239,42CWH@671232,4HAHU@91061,COG1020@1,COG1020@2	NA|NA|NA	Q	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAPOILPD_01805	1035184.HMPREF1042_1257	1e-36	159.5	Bacilli			4.1.1.86	ko:K13745	ko00260,ko01120,map00260,map01120		R07650	RC00299	ko00000,ko00001,ko01000				Bacteria	1TSK0@1239,4HEW5@91061,COG0076@1,COG0076@2	NA|NA|NA	E	Pyridoxal-dependent decarboxylase conserved domain
PAPOILPD_01806	353496.LBU_1022	3e-164	584.3	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01807	353496.LBU_0734	1.4e-167	595.5	Lactobacillaceae													Bacteria	1U35Y@1239,3FBI9@33958,4HCXK@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_01808	390333.Ldb0855	0.0	1807.7	Lactobacillaceae													Bacteria	1TPVY@1239,3F4AK@33958,4HD9X@91061,COG4485@1,COG4485@2	NA|NA|NA	S	Bacterial membrane protein YfhO
PAPOILPD_01809	353496.LBU_0240	8.4e-132	476.5	Lactobacillaceae	tcyA			ko:K02424,ko:K10009	ko02010,map02010	M00234			ko00000,ko00001,ko00002,ko02000,ko02035	3.A.1.3.10,3.A.1.3.14			Bacteria	1UFZS@1239,3FC54@33958,4HD9I@91061,COG0834@1,COG0834@2	NA|NA|NA	ET	Belongs to the bacterial solute-binding protein 3 family
PAPOILPD_01810	353496.LBU_0241	1.2e-132	479.2	Lactobacillaceae	glnQ		3.6.3.21	ko:K02028,ko:K10010	ko02010,map02010	M00234,M00236			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.10,3.A.1.3.14			Bacteria	1TNYD@1239,3F4YF@33958,4HUHS@91061,COG1126@1,COG1126@2	NA|NA|NA	E	ABC transporter, ATP-binding protein
PAPOILPD_01811	353496.LBU_0242	4.4e-127	460.7	Lactobacillaceae	tcyB	GO:0000099,GO:0000101,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015184,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015811,GO:0015849,GO:0016020,GO:0022857,GO:0033229,GO:0034220,GO:0042883,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0072348,GO:0072349,GO:0098655,GO:0098656,GO:1901682,GO:1902475,GO:1903712,GO:1903825,GO:1905039		ko:K02424,ko:K10009	ko02010,map02010	M00234			ko00000,ko00001,ko00002,ko02000,ko02035	3.A.1.3.10,3.A.1.3.14		iYO844.BSU03600	Bacteria	1TPQ8@1239,3F4QR@33958,4H9N1@91061,COG0765@1,COG0765@2	NA|NA|NA	E	ABC transporter
PAPOILPD_01813	353496.LBU_0243	3.7e-129	467.6	Lactobacillaceae			2.4.2.3	ko:K00757	ko00240,ko00983,ko01100,map00240,map00983,map01100		R01876,R02484,R08229	RC00063	ko00000,ko00001,ko01000				Bacteria	1TQ71@1239,3F3UX@33958,4IRA8@91061,COG2820@1,COG2820@2	NA|NA|NA	F	Phosphorylase superfamily
PAPOILPD_01814	353496.LBU_0244	5.3e-250	869.8	Lactobacillaceae	yxbA		6.3.1.12	ko:K17810					ko00000,ko01000				Bacteria	1TQPN@1239,3F3S7@33958,4HAB0@91061,COG3919@1,COG3919@2	NA|NA|NA	S	ATP-grasp enzyme
PAPOILPD_01815	1293597.BN147_07555	7.1e-127	460.3	Lactobacillaceae	aroE	GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0030266,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0051287,GO:0052734,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25,1.1.1.282,1.3.5.4	ko:K00014,ko:K00244,ko:K05887	ko00020,ko00190,ko00400,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko02020,map00020,map00190,map00400,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map01230,map02020	M00009,M00011,M00022,M00150,M00173	R01872,R02164,R02413,R06846,R06847	RC00045,RC00154,RC00206	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS14185,iSFxv_1172.SFxv_1929,iS_1188.S1854	Bacteria	1TQRY@1239,3F4WM@33958,4HD4R@91061,COG0169@1,COG0169@2	NA|NA|NA	E	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PAPOILPD_01816	1293597.BN147_07530	5.1e-109	401.0	Lactobacillaceae													Bacteria	1V3HS@1239,3F4HP@33958,4IQPW@91061,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain
PAPOILPD_01817	1293597.BN147_07525	6.4e-38	163.3	Lactobacillaceae			1.3.5.4	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	M00009,M00011,M00150,M00173	R02164	RC00045	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPAR@1239,3F53U@33958,4HAXN@91061,COG1053@1,COG1053@2,COG3976@1,COG3976@2	NA|NA|NA	C	FAD binding domain
PAPOILPD_01818	1293597.BN147_07525	5.9e-270	936.4	Lactobacillaceae			1.3.5.4	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	M00009,M00011,M00150,M00173	R02164	RC00045	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPAR@1239,3F53U@33958,4HAXN@91061,COG1053@1,COG1053@2,COG3976@1,COG3976@2	NA|NA|NA	C	FAD binding domain
PAPOILPD_01819	1293597.BN147_07520	7.6e-77	293.1	Lactobacillaceae													Bacteria	1U6CX@1239,29PB7@1,30A9E@2,3F7MM@33958,4IG4N@91061	NA|NA|NA		
PAPOILPD_01821	353496.LBU_1053	3.5e-169	602.1	Lactobacillaceae				ko:K07458					ko00000,ko01000,ko03400				Bacteria	1UFHM@1239,3FA34@33958,4HA81@91061,COG3727@1,COG3727@2	NA|NA|NA	L	T/G mismatch-specific endonuclease activity
PAPOILPD_01822	353496.LBU_1052	5.1e-131	473.8	Lactobacillaceae													Bacteria	1U4SB@1239,2BZDU@1,2ZB95@2,3F9WR@33958,4IHIQ@91061	NA|NA|NA		
PAPOILPD_01823	913848.AELK01000011_gene1159	0.0	1230.7	Lactobacillaceae	copB		3.6.3.4	ko:K01533			R00086	RC00002	ko00000,ko01000	3.A.3.5			Bacteria	1TP5S@1239,3F4IX@33958,4HAI0@91061,COG2217@1,COG2217@2	NA|NA|NA	P	P-type ATPase
PAPOILPD_01824	1423790.BN53_01690	1.5e-36	158.3	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01825	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01826	353496.LBU_0219	2.6e-145	521.5	Lactobacillaceae	oppB			ko:K02033,ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TP1S@1239,3F42T@33958,4HA2S@91061,COG0601@1,COG0601@2	NA|NA|NA	P	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PAPOILPD_01827	353496.LBU_0220	1.7e-177	628.6	Lactobacillaceae	oppC			ko:K02034,ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TP4R@1239,3F3W3@33958,4H9PZ@91061,COG1173@1,COG1173@2	NA|NA|NA	EP	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PAPOILPD_01828	353496.LBU_0221	8.7e-198	696.0	Lactobacillaceae	oppD			ko:K02031,ko:K02032,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TP6E@1239,3F41T@33958,4HA4E@91061,COG0444@1,COG0444@2	NA|NA|NA	P	Belongs to the ABC transporter superfamily
PAPOILPD_01829	353496.LBU_0222	4.1e-178	630.6	Lactobacillaceae	oppF			ko:K02032,ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1V36J@1239,3F4GM@33958,4H9YB@91061,COG4608@1,COG4608@2	NA|NA|NA	P	Belongs to the ABC transporter superfamily
PAPOILPD_01830	1291743.LOSG293_480040	2.7e-51	208.4	Lactobacillaceae	yvcC			ko:K07114					ko00000,ko02000	1.A.13.2.2,1.A.13.2.3			Bacteria	1V87P@1239,3F3PM@33958,4HA8Y@91061,COG2304@1,COG2304@2,COG4932@1,COG4932@2	NA|NA|NA	M	Cna protein B-type domain
PAPOILPD_01831	1291743.LOSG293_480030	3.3e-172	610.9	Lactobacillaceae													Bacteria	1VSXA@1239,3F4SG@33958,4HTS0@91061,COG4932@1,COG4932@2	NA|NA|NA	M	domain protein
PAPOILPD_01832	1291743.LOSG293_480020	8.4e-242	842.8	Lactobacillaceae													Bacteria	1V9N0@1239,3FC2C@33958,4HJ5N@91061,COG4932@1,COG4932@2	NA|NA|NA	M	LPXTG cell wall anchor motif
PAPOILPD_01833	1291743.LOSG293_480010	1.5e-101	375.6	Lactobacillaceae			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	1UN9R@1239,3F6TV@33958,4HGDU@91061,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
PAPOILPD_01834	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01836	353496.LBU_1335	4.2e-226	790.4	Lactobacillaceae	dacA	GO:0003674,GO:0003824,GO:0004175,GO:0004180,GO:0004185,GO:0005575,GO:0005618,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0009002,GO:0016787,GO:0017171,GO:0019538,GO:0030312,GO:0043170,GO:0044238,GO:0044464,GO:0070008,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564	3.4.16.4	ko:K01286,ko:K07258	ko00550,ko01100,map00550,map01100				ko00000,ko00001,ko01000,ko01002,ko01011				Bacteria	1TQN0@1239,3F43S@33958,4HBD4@91061,COG1686@1,COG1686@2	NA|NA|NA	M	Belongs to the peptidase S11 family
PAPOILPD_01837	353496.LBU_1334	1.4e-153	548.9	Lactobacillaceae	nnrD		4.2.1.136,5.1.99.6	ko:K17758,ko:K17759					ko00000,ko01000				Bacteria	1TNZE@1239,3F480@33958,4HBZC@91061,COG0063@1,COG0063@2	NA|NA|NA	H	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PAPOILPD_01838	390333.Ldb1553	5.3e-228	797.0	Lactobacillaceae				ko:K20276	ko02024,map02024				ko00000,ko00001				Bacteria	1V4KP@1239,3F6PH@33958,4HIBF@91061,COG1376@1,COG1376@2,COG3064@1,COG3064@2	NA|NA|NA	M	ErfK YbiS YcfS YnhG
PAPOILPD_01841	353496.LBU_1747	2.3e-63	248.1	Lactobacillaceae													Bacteria	1VY7K@1239,2F916@1,341CT@2,3F70S@33958,4HX4B@91061	NA|NA|NA	S	Iron-sulphur cluster biosynthesis
PAPOILPD_01842	353496.LBU_1746	0.0	1164.4	Lactobacillaceae	yhcA			ko:K02003,ko:K02004,ko:K05685	ko02010,map02010	M00258,M00709			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.122.1,3.A.1.122.12			Bacteria	1TPBJ@1239,3F44P@33958,4HBK7@91061,COG0577@1,COG0577@2,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
PAPOILPD_01843	353496.LBU_1745	2.5e-115	421.4	Lactobacillaceae													Bacteria	1V4D3@1239,3F6ZM@33958,4HJ8Z@91061,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
PAPOILPD_01844	390333.Ldb0096	0.0	1481.8	Lactobacillaceae	rtpR		1.1.98.6,1.17.4.1,1.17.4.2	ko:K00525,ko:K00527,ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02014,R02017,R02018,R02019,R02020,R02022,R02023,R02024,R04315,R11633,R11634,R11635,R11636	RC00013,RC00613	ko00000,ko00001,ko00002,ko01000,ko03400				Bacteria	1TT3U@1239,3F3VU@33958,4HFF1@91061,COG0209@1,COG0209@2	NA|NA|NA	F	ribonucleoside-triphosphate reductase activity
PAPOILPD_01845	1423775.BAMN01000005_gene1397	2.1e-11	75.9	Lactobacillaceae													Bacteria	1VF26@1239,2DNM7@1,32Y2X@2,3F6AM@33958,4HP82@91061	NA|NA|NA	S	Domain of unknown function (DUF4430)
PAPOILPD_01846	353496.LBU_0063	6.8e-93	346.7	Lactobacillaceae				ko:K16924,ko:K16927		M00582			ko00000,ko00002,ko02000	3.A.1.29,3.A.1.32			Bacteria	1V5GD@1239,3F5H7@33958,4HI8Y@91061,COG4720@1,COG4720@2	NA|NA|NA	S	ECF transporter, substrate-specific component
PAPOILPD_01847	353496.LBU_0064	7.2e-98	363.2	Lactobacillaceae	yvqK	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	1.2.1.88,1.5.5.2,2.5.1.17	ko:K00798,ko:K13821	ko00250,ko00330,ko00860,ko01100,ko01110,ko01130,map00250,map00330,map00860,map01100,map01110,map01130	M00122	R00245,R00707,R00708,R01253,R01492,R04444,R04445,R05051,R05220,R07268	RC00080,RC00083,RC00216,RC00242,RC00255,RC00533	ko00000,ko00001,ko00002,ko01000,ko03000				Bacteria	1UZ2W@1239,3F6MY@33958,4HF48@91061,COG2096@1,COG2096@2	NA|NA|NA	S	cob(I)alamin adenosyltransferase
PAPOILPD_01858	1293597.BN147_06665	3.2e-167	595.1	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01859	390333.Ldb0952	2e-36	157.9	Lactobacillaceae													Bacteria	1U71Y@1239,29PUF@1,30ASK@2,3F8VI@33958,4IGWE@91061	NA|NA|NA		
PAPOILPD_01860	353496.LBU_0811	2.3e-69	268.1	Bacilli	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	1TS8B@1239,4ISKA@91061,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
PAPOILPD_01861	353496.LBU_1289	4.4e-15	87.4	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01862	1293597.BN147_10190	1.8e-63	249.2	Lactobacillaceae	guaB2												Bacteria	1TQNJ@1239,3F67A@33958,4HPRA@91061,COG2452@1,COG2452@2	NA|NA|NA	L	Resolvase, N terminal domain
PAPOILPD_01863	353496.LBU_1723	3.3e-69	268.1	Lactobacillaceae			5.99.1.2	ko:K03168					ko00000,ko01000,ko03032,ko03400				Bacteria	1TSW8@1239,3F4R9@33958,4HBT1@91061,COG2199@1,COG3706@2	NA|NA|NA	T	diguanylate cyclase
PAPOILPD_01864	1293597.BN147_01505	1.3e-62	246.1	Lactobacillaceae	brnQ	GO:0003333,GO:0003674,GO:0005215,GO:0005304,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015188,GO:0015190,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015803,GO:0015804,GO:0015807,GO:0015818,GO:0015820,GO:0015829,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0034220,GO:0042221,GO:0042493,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903785,GO:1903825,GO:1905039		ko:K03311					ko00000	2.A.26			Bacteria	1TQIS@1239,3F3KC@33958,4HAKA@91061,COG1114@1,COG1114@2	NA|NA|NA	U	Component of the transport system for branched-chain amino acids
PAPOILPD_01865	353496.LBU_1258	5.2e-21	107.1	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01866	353496.LBU_1289	8e-70	269.6	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01867	353496.LBU_0677	5.4e-65	253.4	Lactobacillaceae													Bacteria	1U6DW@1239,2A5X0@1,30UP0@2,3F7P8@33958,4IG5K@91061	NA|NA|NA		
PAPOILPD_01868	390333.Ldb0784	9.1e-311	1072.0	Lactobacillaceae				ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01870	390333.Ldb0783	9e-124	449.5	Lactobacillaceae	pnb												Bacteria	1V6AG@1239,3F6YM@33958,4HN5N@91061,COG0778@1,COG0778@2	NA|NA|NA	C	nitroreductase
PAPOILPD_01872	877414.ATWA01000019_gene2063	7.5e-104	384.4	Clostridia													Bacteria	1TQK6@1239,24AHH@186801,28ISM@1,2Z8RR@2	NA|NA|NA		
PAPOILPD_01875	326425.lhe_1059	5.7e-144	516.9	Lactobacillaceae													Bacteria	1VX75@1239,3F5WJ@33958,4HH0B@91061,COG1215@1,COG1215@2	NA|NA|NA	M	Glycosyl transferase family group 2
PAPOILPD_01876	353496.LBU_0806	4.6e-160	570.5	Lactobacillaceae	spoU		2.1.1.185	ko:K03218,ko:K03437					ko00000,ko01000,ko03009,ko03016				Bacteria	1TSUW@1239,3F598@33958,4HVQM@91061,COG0566@1,COG0566@2	NA|NA|NA	J	Methyltransferase
PAPOILPD_01877	1293597.BN147_08655	9.5e-289	998.8	Lactobacillaceae	asnB	GO:0000166,GO:0003674,GO:0003824,GO:0004066,GO:0004071,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006541,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016054,GO:0016211,GO:0016597,GO:0016874,GO:0016879,GO:0016880,GO:0016884,GO:0017076,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034641,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0071704,GO:0072330,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607	6.3.5.4	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110		R00578	RC00010	ko00000,ko00001,ko01000,ko01002			iB21_1397.B21_00622,iECBD_1354.ECBD_2988,iECB_1328.ECB_00631,iECD_1391.ECD_00631,iEcHS_1320.EcHS_A0717,iEcolC_1368.EcolC_2982,iSF_1195.SF0619	Bacteria	1TRPB@1239,3F5CH@33958,4HAIP@91061,COG0367@1,COG0367@2	NA|NA|NA	E	Aluminium induced protein
PAPOILPD_01884	1293597.BN147_08645	9.4e-145	520.0	Lactobacillaceae	adhE		1.1.1.1,1.2.1.10	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220		R00228,R00623,R00754,R01172,R04880,R05233,R05234,R06917,R06927	RC00004,RC00050,RC00088,RC00099,RC00116,RC00184,RC00649,RC01195	ko00000,ko00001,ko01000				Bacteria	1TPB4@1239,3F3RN@33958,4HAN8@91061,COG1012@1,COG1012@2,COG1454@1,COG1454@2	NA|NA|NA	C	belongs to the iron- containing alcohol dehydrogenase family
PAPOILPD_01885	1293597.BN147_08620	4.8e-13	80.1	Firmicutes													Bacteria	1TS97@1239,COG0726@1,COG0726@2	NA|NA|NA	G	Polysaccharide deacetylase
PAPOILPD_01886	1293597.BN147_08610	1.2e-48	199.9	Lactobacillaceae													Bacteria	1VDPT@1239,2DMIQ@1,32RV1@2,3F6VC@33958,4HKU5@91061	NA|NA|NA	S	Domain of Unknown Function with PDB structure (DUF3862)
PAPOILPD_01887	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01888	862969.SCI_1171	5.1e-30	136.7	Streptococcus anginosus group			6.1.1.13	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	M00725	R02718	RC00037,RC00094	ko00000,ko00001,ko00002,ko01000,ko01504				Bacteria	1TPTH@1239,42CWH@671232,4HAHU@91061,COG1020@1,COG1020@2	NA|NA|NA	Q	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAPOILPD_01889	1314.HKU360_00473	8.8e-127	460.3	Bacilli													Bacteria	1UHQE@1239,4IS66@91061,COG0477@1,COG0477@2	NA|NA|NA	EGP	Transmembrane secretion effector
PAPOILPD_01890	1280679.ATVX01000005_gene989	5.7e-39	166.8	Butyrivibrio			1.14.99.57	ko:K06996,ko:K21481					ko00000,ko01000				Bacteria	1V9X0@1239,251FK@186801,4C26E@830,COG1359@1,COG1359@2	NA|NA|NA	S	Antibiotic biosynthesis monooxygenase
PAPOILPD_01893	575605.ACQN01000044_gene1087	3e-213	748.4	Lactobacillaceae	ybfG												Bacteria	1TPV1@1239,3F5J4@33958,4HCRA@91061,COG3409@1,COG3409@2	NA|NA|NA	M	peptidoglycan-binding domain-containing protein
PAPOILPD_01895	353496.LBU_0043	0.0	1208.0	Lactobacillaceae													Bacteria	1UZCF@1239,3F48H@33958,4HDPY@91061,COG4485@1,COG4485@2	NA|NA|NA	S	Bacterial membrane protein, YfhO
PAPOILPD_01896	353496.LBU_0044	5e-176	623.6	Lactobacillaceae	yfdH			ko:K12999,ko:K20534					ko00000,ko01000,ko01003,ko01005,ko02000	4.D.2.1.9	GT2		Bacteria	1TPR3@1239,3FBT4@33958,4HC2Z@91061,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyltransferase like family 2
PAPOILPD_01897	353496.LBU_1258	7.9e-70	269.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01898	326425.lhe_1288	7.1e-106	389.8	Lactobacillaceae	pepO		3.4.24.71	ko:K01415,ko:K07386					ko00000,ko01000,ko01002,ko04147				Bacteria	1TQTA@1239,3F4CX@33958,4HDSF@91061,COG3590@1,COG3590@2	NA|NA|NA	O	Peptidase family M13
PAPOILPD_01899	353496.LBU_1254	2.6e-230	804.3	Lactobacillaceae	cfa		2.1.1.317,2.1.1.79	ko:K00574,ko:K20238					ko00000,ko01000				Bacteria	1TSG4@1239,3F3PA@33958,4HDKI@91061,COG2230@1,COG2230@2	NA|NA|NA	M	cyclopropane-fatty-acyl-phospholipid synthase
PAPOILPD_01900	390333.Ldb1803	1.5e-144	518.8	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01901	353496.LBU_0696	2.3e-173	614.8	Lactobacillaceae	gyaR		1.1.1.26,2.7.1.165	ko:K00015,ko:K11529,ko:K15893	ko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01110,map01120,map01130,map01200	M00346,M00532	R00717,R01388,R08572	RC00002,RC00031,RC00042,RC00428	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPCX@1239,3F4Z6@33958,4HASY@91061,COG1052@1,COG1052@2	NA|NA|NA	CH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAPOILPD_01902	353496.LBU_0695	9.3e-186	656.0	Lactobacillaceae				ko:K07045					ko00000				Bacteria	1V4YS@1239,3F4TK@33958,4IEX1@91061,COG3618@1,COG3618@2	NA|NA|NA	S	Amidohydrolase
PAPOILPD_01903	1293597.BN147_02000	1.3e-62	245.4	Lactobacillaceae	XK27_01125			ko:K07484					ko00000				Bacteria	1V7U9@1239,3F6PQ@33958,4IR8Z@91061,COG3436@1,COG3436@2	NA|NA|NA	L	IS66 Orf2 like protein
PAPOILPD_01904	1293597.BN147_01995	5.7e-33	146.4	Lactobacillaceae													Bacteria	1W58V@1239,2DEEV@1,2ZMQ9@2,3F7PV@33958,4I00W@91061	NA|NA|NA	S	Transposase C of IS166 homeodomain
PAPOILPD_01905	1293597.BN147_01990	9.6e-258	895.6	Lactobacillaceae				ko:K07484					ko00000				Bacteria	1VZPC@1239,3FBX3@33958,4H9WS@91061,COG3316@1,COG3316@2	NA|NA|NA	L	Transposase and inactivated derivatives
PAPOILPD_01906	353496.LBU_1022	4.9e-78	297.0	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01907	1302286.BAOT01000085_gene2226	1.7e-193	681.8	Lactobacillaceae													Bacteria	1TRSF@1239,3F3YG@33958,4HADR@91061,COG2826@1,COG2826@2	NA|NA|NA	L	Transposase and inactivated derivatives, IS30 family
PAPOILPD_01908	1291743.LOSG293_480010	1.2e-67	262.7	Lactobacillaceae			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	1UN9R@1239,3F6TV@33958,4HGDU@91061,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
PAPOILPD_01909	1008453.HMPREF9957_1030	2.3e-58	231.9	Streptococcus mitis				ko:K20374	ko02024,map02024				ko00000,ko00001,ko03000				Bacteria	1UZI0@1239,2TPP8@28037,4HC2C@91061,COG1396@1,COG1396@2	NA|NA|NA	K	Helix-turn-helix XRE-family like proteins
PAPOILPD_01911	1282887.AUJG01000012_gene2266	7.7e-10	69.7	Bacteria													Bacteria	COG1309@1,COG1309@2	NA|NA|NA	K	transcriptional regulator
PAPOILPD_01912	1282887.AUJG01000012_gene2266	6.8e-20	103.2	Bacteria													Bacteria	COG1309@1,COG1309@2	NA|NA|NA	K	transcriptional regulator
PAPOILPD_01913	1282887.AUJG01000012_gene2267	3.5e-103	381.3	Bacteria													Bacteria	2CANS@1,33QAQ@2	NA|NA|NA		
PAPOILPD_01914	353496.LBU_0213	5.9e-121	440.3	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01915	353496.LBU_0213	3.2e-68	264.2	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01917	353496.LBU_0211	2.9e-119	434.5	Lactobacillaceae	ypgQ			ko:K06950					ko00000				Bacteria	1V7IZ@1239,3F3PN@33958,4HIVB@91061,COG1418@1,COG1418@2	NA|NA|NA	S	Metal dependent phosphohydrolases with conserved 'HD' motif.
PAPOILPD_01918	353496.LBU_1349	3.7e-182	644.0	Lactobacillaceae	yumC	GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0042221,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071281	1.18.1.2,1.19.1.1,1.8.1.9	ko:K00384,ko:K21567	ko00450,map00450		R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000			iYO844.BSU32110	Bacteria	1TRPN@1239,3F3NQ@33958,4H9V7@91061,COG0492@1,COG0492@2	NA|NA|NA	C	Ferredoxin--NADP reductase
PAPOILPD_01919	390333.Ldb1587	1.7e-114	418.7	Lactobacillaceae	dedA			ko:K03975					ko00000				Bacteria	1UZ4P@1239,3F4KG@33958,4HG3F@91061,COG0586@1,COG0586@2	NA|NA|NA	S	SNARE-like domain protein
PAPOILPD_01920	353496.LBU_0481	2.5e-68	264.6	Lactobacillaceae	spxA		1.20.4.1	ko:K00537,ko:K16509					ko00000,ko01000				Bacteria	1V3QC@1239,3F6HJ@33958,4HH0I@91061,COG1393@1,COG1393@2	NA|NA|NA	K	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
PAPOILPD_01921	353496.LBU_0482	4.4e-135	487.3	Lactobacillaceae	mecA	GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141		ko:K16511					ko00000				Bacteria	1UZ7D@1239,3F5G4@33958,4HID6@91061,COG4862@1,COG4862@2	NA|NA|NA	NOT	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
PAPOILPD_01922	353496.LBU_1022	6.4e-78	296.6	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01923	353496.LBU_1032	1.2e-157	562.4	Lactobacillaceae	xerD			ko:K04763					ko00000,ko03036				Bacteria	1UFH8@1239,3F3KV@33958,4IES1@91061,COG4974@1,COG4974@2	NA|NA|NA	L	Phage integrase, N-terminal SAM-like domain
PAPOILPD_01924	353496.LBU_1033	3.1e-101	374.4	Lactobacillaceae	lepB		3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060				ko00000,ko00001,ko01000,ko01002				Bacteria	1V7H9@1239,3F4SM@33958,4HIQ4@91061,COG0681@1,COG0681@2	NA|NA|NA	U	Belongs to the peptidase S26 family
PAPOILPD_01925	390333.Ldb0276	7.7e-286	989.2	Lactobacillaceae	oppA			ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	1TNYQ@1239,3F3JE@33958,4HAMK@91061,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substratebinding protein
PAPOILPD_01926	1293597.BN147_02000	6.7e-62	243.0	Lactobacillaceae	XK27_01125			ko:K07484					ko00000				Bacteria	1V7U9@1239,3F6PQ@33958,4IR8Z@91061,COG3436@1,COG3436@2	NA|NA|NA	L	IS66 Orf2 like protein
PAPOILPD_01927	1293597.BN147_01995	9.1e-31	139.0	Lactobacillaceae													Bacteria	1W58V@1239,2DEEV@1,2ZMQ9@2,3F7PV@33958,4I00W@91061	NA|NA|NA	S	Transposase C of IS166 homeodomain
PAPOILPD_01928	1293597.BN147_01990	2.7e-260	904.0	Lactobacillaceae				ko:K07484					ko00000				Bacteria	1VZPC@1239,3FBX3@33958,4H9WS@91061,COG3316@1,COG3316@2	NA|NA|NA	L	Transposase and inactivated derivatives
PAPOILPD_01929	1293597.BN147_08055	6.2e-206	723.4	Lactobacillaceae	pyrC	GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPQM@1239,3F3S3@33958,4HA90@91061,COG0044@1,COG0044@2	NA|NA|NA	F	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
PAPOILPD_01930	1293597.BN147_08050	1.1e-69	269.2	Lactobacillaceae	pyrB	GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.3.2	ko:K00608,ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R01397	RC00064,RC02850	ko00000,ko00001,ko00002,ko01000			iYO844.BSU15490	Bacteria	1TQ96@1239,3F4BQ@33958,4H9M6@91061,COG0540@1,COG0540@2	NA|NA|NA	F	Belongs to the ATCase OTCase family
PAPOILPD_01931	1293597.BN147_10190	7.8e-65	253.1	Lactobacillaceae	guaB2												Bacteria	1TQNJ@1239,3F67A@33958,4HPRA@91061,COG2452@1,COG2452@2	NA|NA|NA	L	Resolvase, N terminal domain
PAPOILPD_01932	353496.LBU_1289	1.3e-100	372.5	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01933	353496.LBU_0551	9.9e-149	532.7	Lactobacillaceae													Bacteria	1TR16@1239,3F55S@33958,4HCZ6@91061,COG0561@1,COG0561@2	NA|NA|NA	S	hydrolase
PAPOILPD_01934	353496.LBU_1022	1.4e-130	472.2	Lactobacillaceae													Bacteria	1TRSF@1239,3FB5V@33958,4HAYI@91061,COG2826@1,COG2826@2	NA|NA|NA	L	COG2826 Transposase and inactivated derivatives, IS30 family
PAPOILPD_01935	353496.LBU_1304	1.2e-249	868.6	Lactobacillaceae	mpl	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0016874,GO:0016879,GO:0016881,GO:0042802,GO:0044424,GO:0044464	6.3.2.4,6.3.2.45,6.3.2.8	ko:K01921,ko:K01924,ko:K02558	ko00471,ko00473,ko00550,ko01100,ko01502,map00471,map00473,map00550,map01100,map01502		R01150,R03193	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011			iSDY_1059.SDY_4251	Bacteria	1TQ5H@1239,3F49J@33958,4HAR4@91061,COG0773@1,COG0773@2	NA|NA|NA	M	Belongs to the MurCDEF family
PAPOILPD_01936	353496.LBU_0686	3.7e-67	260.8	Lactobacillaceae	pckA		4.1.1.49	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00170	R00341	RC00002,RC02741	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPXB@1239,3F4N4@33958,4IS6N@91061,COG1866@1,COG1866@2	NA|NA|NA	H	Phosphoenolpyruvate carboxykinase
PAPOILPD_01937	353496.LBU_0686	8e-56	223.0	Lactobacillaceae	pckA		4.1.1.49	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00170	R00341	RC00002,RC02741	ko00000,ko00001,ko00002,ko01000				Bacteria	1TPXB@1239,3F4N4@33958,4IS6N@91061,COG1866@1,COG1866@2	NA|NA|NA	H	Phosphoenolpyruvate carboxykinase
PAPOILPD_01938	1293597.BN147_10190	2.2e-82	311.6	Lactobacillaceae	guaB2												Bacteria	1TQNJ@1239,3F67A@33958,4HPRA@91061,COG2452@1,COG2452@2	NA|NA|NA	L	Resolvase, N terminal domain
PAPOILPD_01939	353496.LBU_1256	2e-183	648.3	Lactobacillaceae	add		3.5.4.4	ko:K01488	ko00230,ko01100,ko05340,map00230,map01100,map05340		R01560,R02556	RC00477	ko00000,ko00001,ko01000			iHN637.CLJU_RS13960	Bacteria	1U44B@1239,3F5RC@33958,4HCES@91061,COG1816@1,COG1816@2	NA|NA|NA	F	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
PAPOILPD_01940	353496.LBU_1258	2.1e-70	271.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01955	1293597.BN147_08050	1.1e-99	369.4	Lactobacillaceae	pyrB	GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.3.2	ko:K00608,ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R01397	RC00064,RC02850	ko00000,ko00001,ko00002,ko01000			iYO844.BSU15490	Bacteria	1TQ96@1239,3F4BQ@33958,4H9M6@91061,COG0540@1,COG0540@2	NA|NA|NA	F	Belongs to the ATCase OTCase family
PAPOILPD_01956	390333.Ldb1803	3.4e-144	517.7	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01957	353496.LBU_1029	1e-44	185.7	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01958	390333.Ldb1803	1.2e-144	519.2	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01959	353496.LBU_1029	2.6e-45	187.6	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01960	1033837.WANG_0286	2.9e-139	501.9	Lactobacillaceae				ko:K07497					ko00000				Bacteria	1TQQY@1239,3FCFA@33958,4HC8M@91061,COG2801@1,COG2801@2	NA|NA|NA	L	COG2963 Transposase and inactivated derivatives
PAPOILPD_01961	748671.LCRIS_00547	6.8e-35	154.1	Lactobacillaceae				ko:K07496					ko00000				Bacteria	1TQAH@1239,3FBNH@33958,4IRBD@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Probable transposase
PAPOILPD_01962	1293597.BN147_10180	5.4e-102	377.1	Lactobacillaceae	brpA												Bacteria	1TR1B@1239,3F3MQ@33958,4HA09@91061,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-like function transcriptional attenuator common domain protein
PAPOILPD_01963	748671.LCRIS_00118	7.5e-16	89.0	Lactobacillaceae				ko:K07493					ko00000				Bacteria	1TP4C@1239,3F4RA@33958,4HAXJ@91061,COG3328@1,COG3328@2	NA|NA|NA	L	Transposase
PAPOILPD_01964	390333.Ldb0300	5.8e-64	250.0	Lactobacillaceae				ko:K18843					ko00000,ko02048				Bacteria	1VAII@1239,3F8YB@33958,4HM80@91061,COG1598@1,COG1598@2	NA|NA|NA	S	HicB family
PAPOILPD_01965	748671.LCRIS_01911	3.2e-87	328.6	Lactobacillaceae													Bacteria	1UFUT@1239,29NJE@1,30GE4@2,3F51E@33958,4IEZ0@91061	NA|NA|NA	K	Helix-turn-helix XRE-family like proteins
PAPOILPD_01966	545243.BAEV01000112_gene12	7.2e-13	79.7	Clostridiaceae													Bacteria	1VU05@1239,25ECQ@186801,36UKF@31979,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyltransferase like family 2
PAPOILPD_01967	353496.LBU_0106	1.8e-82	312.0	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01968	1423748.BALB01000054_gene2078	3.6e-22	110.2	Lactobacillaceae													Bacteria	1U6P1@1239,29PJ9@1,30AHE@2,3F88A@33958,4IGFZ@91061	NA|NA|NA		
PAPOILPD_01969	1293597.BN147_02000	1.7e-51	208.4	Lactobacillaceae	XK27_01125			ko:K07484					ko00000				Bacteria	1V7U9@1239,3F6PQ@33958,4IR8Z@91061,COG3436@1,COG3436@2	NA|NA|NA	L	IS66 Orf2 like protein
PAPOILPD_01970	353496.LBU_1523	2.8e-25	121.3	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01971	405566.lhv_1906	1.4e-66	258.8	Lactobacillaceae													Bacteria	1UZVH@1239,2BVJW@1,32QXP@2,3F54U@33958,4HFK6@91061	NA|NA|NA	S	Uncharacterised protein family (UPF0236)
PAPOILPD_01972	525309.HMPREF0494_1996	2.1e-26	124.4	Lactobacillaceae	yfiC			ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	1TP0B@1239,3F3PD@33958,4HA3S@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
PAPOILPD_01973	353496.LBU_0841	1.8e-34	151.4	Lactobacillaceae	yfiC			ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	1TP0B@1239,3F3PD@33958,4HA3S@91061,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
PAPOILPD_01974	1293597.BN147_05025	6.2e-22	109.4	Lactobacillaceae				ko:K07483					ko00000				Bacteria	1V35U@1239,3F3ZK@33958,4HHRN@91061,COG2963@1,COG2963@2	NA|NA|NA	L	Helix-turn-helix domain
PAPOILPD_01976	1293597.BN147_10195	1.5e-44	186.4	Lactobacillaceae													Bacteria	1U7T5@1239,3F51F@33958,4HNFV@91061,COG0675@1,COG0675@2	NA|NA|NA	L	Putative transposase DNA-binding domain
PAPOILPD_01977	1293597.BN147_01990	3.3e-80	304.3	Lactobacillaceae				ko:K07484					ko00000				Bacteria	1VZPC@1239,3FBX3@33958,4H9WS@91061,COG3316@1,COG3316@2	NA|NA|NA	L	Transposase and inactivated derivatives
PAPOILPD_01978	390333.Ldb1221	4.5e-125	454.1	Lactobacillaceae													Bacteria	1UI90@1239,2DVJ8@1,33W59@2,3F3K4@33958,4HD3X@91061	NA|NA|NA	S	Peptidase family M23
PAPOILPD_01979	390333.Ldb1803	3.4e-144	517.7	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01980	353496.LBU_0689	1e-51	209.1	Bacilli													Bacteria	1TPDQ@1239,4HADW@91061,COG0620@1,COG0620@2	NA|NA|NA	E	Methionine synthase
PAPOILPD_01981	349123.Lreu23DRAFT_4790	3.2e-65	254.6	Lactobacillaceae	akr5f		1.1.1.346	ko:K06221			R08878	RC00089	ko00000,ko01000				Bacteria	1TPM1@1239,3FB4Q@33958,4H9XJ@91061,COG0656@1,COG0656@2	NA|NA|NA	S	reductase
PAPOILPD_01982	353496.LBU_0688	1.4e-09	67.4	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
PAPOILPD_01983	353496.LBU_1039	4.9e-36	157.1	Lactobacillaceae	mutT		3.6.1.55	ko:K03574					ko00000,ko01000,ko03400				Bacteria	1V6PF@1239,3F66W@33958,4HKTF@91061,COG1051@1,COG1051@2	NA|NA|NA	F	NUDIX domain
PAPOILPD_01984	353496.LBU_1029	1.3e-44	185.3	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01985	1423790.BN53_01690	3.1e-29	133.7	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01986	585524.HMPREF0493_0599	1e-13	82.0	Firmicutes	cspC			ko:K03704					ko00000,ko03000				Bacteria	1VBBH@1239,COG1278@1,COG1278@2	NA|NA|NA	K	Probable zinc-ribbon domain
PAPOILPD_01993	353496.LBU_0106	8.2e-102	376.3	Firmicutes													Bacteria	1UY2W@1239,COG3464@1,COG3464@2	NA|NA|NA	L	Transposase
PAPOILPD_01994	1423790.BN53_01690	2.1e-97	361.7	Lactobacillaceae													Bacteria	1TSH6@1239,3F5HM@33958,4HCB9@91061,COG3385@1,COG3385@2	NA|NA|NA	L	DDE superfamily endonuclease
PAPOILPD_01997	353496.LBU_0688	4.2e-09	65.9	Lactobacillaceae													Bacteria	1TP4A@1239,3F40X@33958,4HDAB@91061,COG3547@1,COG3547@2	NA|NA|NA	L	COG3547 Transposase and inactivated derivatives
# 1804 queries scanned
# Total time (seconds): 4.51760411263
# Rate: 399.33 q/s