Select genomic region:
Overview
1.1
11.1
33.1

### Identified primary metabolite regions

QFDL01000010.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | pdu | SCFA-other | 27,357 | 64,035 | Propanediol degradation S. enterica | PDU | 70%

QFDL01000001.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 11.1 | OD_aldehydes_related | Putative | 91,422 | 122,434 |

QFDL01000003.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 33.1 | Arginine2_Hcarbonate | Other | 169,717 | 195,604 | Arginine to hydrogen carbonate P. aeruginosa | ARG | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 1.1 | pdu | SCFA-other | 27,357 | 64,035 | Propanediol degradation S. enterica | PDU | 70%
Region 11.1 | OD_aldehydes_related | Putative | 91,422 | 122,434 |
Region 33.1 | Arginine2_Hcarbonate | Other | 169,717 | 195,604 | Arginine to hydrogen carbonate P. aeruginosa | ARG | 100%

No primary metabolite regions were found in these records:
  QFDL01000011.1
  QFDL01000012.1
  QFDL01000013.1
  QFDL01000014.1
  QFDL01000015.1
  QFDL01000016.1
  QFDL01000017.1
  QFDL01000018.1
  QFDL01000019.1
  QFDL01000020.1
  QFDL01000021.1
  QFDL01000022.1
  QFDL01000023.1
  QFDL01000024.1
  QFDL01000025.1
  QFDL01000026.1
  QFDL01000027.1
  QFDL01000028.1
  QFDL01000029.1
  QFDL01000002.1
  QFDL01000030.1
  QFDL01000031.1
  QFDL01000032.1
  QFDL01000033.1
  QFDL01000034.1
  QFDL01000035.1
  QFDL01000036.1
  QFDL01000037.1
  QFDL01000038.1
  QFDL01000039.1
  QFDL01000004.1
  QFDL01000005.1
  QFDL01000006.1
  QFDL01000007.1
  QFDL01000008.1
  QFDL01000009.1

Compact view
QFDL01000010.1 - Region 1 - pdu
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 27,357 - 64,035 nt. (total: 36,679 nt) Show pHMM detection rules used
pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
QFDL01000001.1 - Region 1 - OD_aldehydes_related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 91,422 - 122,434 nt. (total: 31,013 nt) Show pHMM detection rules used
OD_aldehydes_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(1, [AFOR_C, AFOR_N, Aldedh]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

QFDL01000003.1 - Region 1 - Arginine2_Hcarbonate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 169,717 - 195,604 nt. (total: 25,888 nt) Show pHMM detection rules used
Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.