GCA_007666235.1 - 12 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

VDOU01000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T3PKS	1	29,347

VDOU01000013.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	terpene	22,152	44,050

VDOU01000015.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NRPS-like,betalactone,NRPS	15,714	66,714	fengycin	NRP	93%

VDOU01000023.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	NRPS	33,480	59,672	surfactin	NRP:Lipopeptide	43%

VDOU01000002.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	glycocin	44,804	64,974	sublancin 168	RiPP:Lanthipeptide	100%

VDOU01000003.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	terpene	5,062	25,868

VDOU01000047.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS	1	17,510	surfactin	NRP:Lipopeptide	39%

VDOU01000004.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	NRPS	45,460	92,596	bacillibactin	NRP	100%

VDOU01000058.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	NRPS	1	8,974	surfactin	NRP:Lipopeptide	8%

VDOU01000006.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 66.1	other	57,794	99,212	bacilysin	Other	100%
Region 66.2	sactipeptide	102,213	123,824	subtilosin A	RiPP:Thiopeptide	100%

VDOU01000009.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 71.1	CDPS	97,746	113,770

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	T3PKS	1	29,347
Region 4.1	terpene	22,152	44,050
Region 6.1	NRPS-like,betalactone,NRPS	15,714	66,714	fengycin	NRP	93%
Region 15.1	NRPS	33,480	59,672	surfactin	NRP:Lipopeptide	43%
Region 22.1	glycocin	44,804	64,974	sublancin 168	RiPP:Lanthipeptide	100%
Region 33.1	terpene	5,062	25,868
Region 41.1	NRPS	1	17,510	surfactin	NRP:Lipopeptide	39%
Region 44.1	NRPS	45,460	92,596	bacillibactin	NRP	100%
Region 53.1	NRPS	1	8,974	surfactin	NRP:Lipopeptide	8%
Region 66.1	other	57,794	99,212	bacilysin	Other	100%
Region 66.2	sactipeptide	102,213	123,824	subtilosin A	RiPP:Thiopeptide	100%
Region 71.1	CDPS	97,746	113,770

No secondary metabolite regions were found in these records:: VDOU01000010.1; VDOU01000011.1; VDOU01000014.1; VDOU01000016.1; VDOU01000017.1; VDOU01000018.1; VDOU01000019.1; VDOU01000001.1; VDOU01000020.1; VDOU01000021.1; VDOU01000022.1; VDOU01000024.1; VDOU01000025.1; VDOU01000026.1; VDOU01000027.1; VDOU01000028.1; VDOU01000029.1; VDOU01000030.1; VDOU01000031.1; VDOU01000032.1; VDOU01000033.1; VDOU01000034.1; VDOU01000035.1; VDOU01000036.1; VDOU01000037.1; VDOU01000038.1; VDOU01000039.1; VDOU01000040.1; VDOU01000041.1; VDOU01000042.1; VDOU01000043.1; VDOU01000044.1; VDOU01000045.1; VDOU01000046.1; VDOU01000048.1; VDOU01000049.1; VDOU01000050.1; VDOU01000051.1; VDOU01000052.1; VDOU01000053.1; VDOU01000054.1; VDOU01000055.1; VDOU01000056.1; VDOU01000057.1; VDOU01000059.1; VDOU01000005.1; VDOU01000060.1; VDOU01000061.1; VDOU01000062.1; VDOU01000063.1; VDOU01000064.1; VDOU01000065.1; VDOU01000066.1; VDOU01000067.1; VDOU01000068.1; VDOU01000069.1; VDOU01000070.1; VDOU01000071.1; VDOU01000007.1; VDOU01000008.1

Compact view

VDOU01000012.1 - Region 1 - T3PKS

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Location: 1 - 29,347 nt. (total: 29,347 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDOU01000013.1 - Region 1 - terpene

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Location: 22,152 - 44,050 nt. (total: 21,899 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDOU01000015.1 - Region 1 - NRPS,NRPS-like,betalactone

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Location: 15,714 - 66,714 nt. (total: 51,001 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
betalactone: (HMGL-like and AMP-binding)
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 15713 - 66714:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 15713 - 56210:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 20585 - 66714:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_34

Search NORINE for peptide: strict or relaxed

AMP-binding (13..445): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gclhIAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg6_40

Search NORINE for peptide: strict or relaxed

AMP-binding (1..293): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

ctg6_43

Search NORINE for peptide: strict or relaxed

AMP-binding (463..864): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1502..1896): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

VDOU01000023.1 - Region 1 - NRPS

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Location: 33,480 - 59,672 nt. (total: 26,193 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 33479 - 59672:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg15_56

Search NORINE for peptide: strict or relaxed

AMP-binding (469..867): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

VDOU01000002.1 - Region 1 - glycocin

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Location: 44,804 - 64,974 nt. (total: 20,171 nt) Show pHMM detection rules used

glycocin: (glycocin or sublancin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

VDOU01000003.1 - Region 1 - terpene

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Location: 5,062 - 25,868 nt. (total: 20,807 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDOU01000047.1 - Region 1 - NRPS

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Location: 1 - 17,510 nt. (total: 17,510 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 17510:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg41_1

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1908): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFMMGMVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

VDOU01000004.1 - Region 1 - NRPS

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Location: 45,460 - 92,596 nt. (total: 47,137 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 45459 - 92596:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg44_66

Search NORINE for peptide: strict or relaxed

AMP-binding (31..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

ctg44_68

Search NORINE for peptide: strict or relaxed

AMP-binding (463..861): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1519..1935): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

VDOU01000058.1 - Region 1 - NRPS

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Location: 1 - 8,974 nt. (total: 8,974 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 8974:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg53_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..864): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1501..1904): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

VDOU01000006.1 - Region 1 - other

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Location: 57,794 - 99,212 nt. (total: 41,419 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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KnownClusterBlast

Similar known gene clusters

VDOU01000006.1 - Region 2 - sactipeptide

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Location: 102,213 - 123,824 nt. (total: 21,612 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Putative Sactipeptide(s)

ctg66_115 leader / core peptide: MKKAVIVENK - GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

Sactipeptides

Core peptide predictions

ctg66_115: Putative sactipeptide; RODEO score: 32.0; Core sequence, approximate: GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

VDOU01000009.1 - Region 1 - CDPS

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Location: 97,746 - 113,770 nt. (total: 16,025 nt) Show pHMM detection rules used

Region on contig edge.

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.