GCA_007666315.1 - 6 region(s)

Identified primary metabolite regions

VDOZ01000010.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	72,467	95,703	Acetate to butyrate C. sporogenes	BUT	50%

VDOZ01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	134,092	157,383
Region 11.2	Fumarate2succinate	SCFA	189,580	212,104	Acetate to butyrate C. sporogenes	BUT	33%

VDOZ01000023.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	hydroxybenzoate2phenol	Aromatic	31,262	53,300	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

VDOZ01000041.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	fatty_acids-unassigned	Putative	1	21,932	Acetate to butyrate C. sporogenes	BUT	33%

VDOZ01000007.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 68.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	3,125	49,195	Nitrate reductase E. coli	NIR	60%

No primary metabolite regions were found in these records:: VDOZ01000011.1; VDOZ01000012.1; VDOZ01000013.1; VDOZ01000014.1; VDOZ01000015.1; VDOZ01000016.1; VDOZ01000017.1; VDOZ01000018.1; VDOZ01000019.1; VDOZ01000020.1; VDOZ01000021.1; VDOZ01000022.1; VDOZ01000024.1; VDOZ01000025.1; VDOZ01000026.1; VDOZ01000027.1; VDOZ01000028.1; VDOZ01000029.1; VDOZ01000002.1; VDOZ01000030.1; VDOZ01000031.1; VDOZ01000032.1; VDOZ01000033.1; VDOZ01000034.1; VDOZ01000035.1; VDOZ01000036.1; VDOZ01000037.1; VDOZ01000038.1; VDOZ01000039.1; VDOZ01000003.1; VDOZ01000040.1; VDOZ01000042.1; VDOZ01000043.1; VDOZ01000044.1; VDOZ01000045.1; VDOZ01000046.1; VDOZ01000047.1; VDOZ01000048.1; VDOZ01000049.1; VDOZ01000004.1; VDOZ01000050.1; VDOZ01000051.1; VDOZ01000052.1; VDOZ01000053.1; VDOZ01000054.1; VDOZ01000055.1; VDOZ01000056.1; VDOZ01000057.1; VDOZ01000058.1; VDOZ01000059.1; VDOZ01000005.1; VDOZ01000060.1; VDOZ01000061.1; VDOZ01000062.1; VDOZ01000063.1; VDOZ01000064.1; VDOZ01000065.1; VDOZ01000066.1; VDOZ01000067.1; VDOZ01000068.1; VDOZ01000069.1; VDOZ01000006.1; VDOZ01000070.1; VDOZ01000008.1; VDOZ01000009.1

Compact view

VDOZ01000010.1 - Region 1 - fatty_acids-unassigned

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Location: 72,467 - 95,703 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

VDOZ01000001.1 - Region 1 - TPP_AA_metabolism

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Location: 134,092 - 157,383 nt. (total: 23,292 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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resistance genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDOZ01000001.1 - Region 2 - Fumarate2succinate

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Location: 189,580 - 212,104 nt. (total: 22,525 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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resistance genes

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VDOZ01000023.1 - Region 1 - hydroxybenzoate2phenol

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Location: 31,262 - 53,300 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

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VDOZ01000041.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 21,932 nt. (total: 21,932 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

VDOZ01000007.1 - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 3,125 - 49,195 nt. (total: 46,071 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters