GCA_007666735.1 - 12 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

VDPT01000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T3PKS	74,684	104,030

VDPT01000013.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	terpene	22,153	44,051

VDPT01000015.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NRPS-like,betalactone,NRPS	15,714	66,714	fengycin	NRP	93%

VDPT01000023.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	NRPS	33,480	59,672	surfactin	NRP:Lipopeptide	43%

VDPT01000002.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	glycocin	260,560	280,730	sublancin 168	RiPP:Lanthipeptide	100%

VDPT01000003.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	terpene	5,062	25,868

VDPT01000047.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS	1	17,510	surfactin	NRP:Lipopeptide	39%

VDPT01000004.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	NRPS	72,713	119,849	bacillibactin	NRP	100%

VDPT01000057.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	NRPS	1	8,974	surfactin	NRP:Lipopeptide	8%

VDPT01000007.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 68.1	other	57,794	99,212	bacilysin	Other	100%
Region 68.2	sactipeptide	102,213	123,824	subtilosin A	RiPP:Thiopeptide	100%

VDPT01000009.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	CDPS	1	16,025

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	T3PKS	74,684	104,030
Region 4.1	terpene	22,153	44,051
Region 6.1	NRPS-like,betalactone,NRPS	15,714	66,714	fengycin	NRP	93%
Region 15.1	NRPS	33,480	59,672	surfactin	NRP:Lipopeptide	43%
Region 22.1	glycocin	260,560	280,730	sublancin 168	RiPP:Lanthipeptide	100%
Region 33.1	terpene	5,062	25,868
Region 41.1	NRPS	1	17,510	surfactin	NRP:Lipopeptide	39%
Region 44.1	NRPS	72,713	119,849	bacillibactin	NRP	100%
Region 52.1	NRPS	1	8,974	surfactin	NRP:Lipopeptide	8%
Region 68.1	other	57,794	99,212	bacilysin	Other	100%
Region 68.2	sactipeptide	102,213	123,824	subtilosin A	RiPP:Thiopeptide	100%
Region 70.1	CDPS	1	16,025

No secondary metabolite regions were found in these records:: VDPT01000010.1; VDPT01000011.1; VDPT01000014.1; VDPT01000016.1; VDPT01000017.1; VDPT01000018.1; VDPT01000019.1; VDPT01000001.1; VDPT01000020.1; VDPT01000021.1; VDPT01000022.1; VDPT01000024.1; VDPT01000025.1; VDPT01000026.1; VDPT01000027.1; VDPT01000028.1; VDPT01000029.1; VDPT01000030.1; VDPT01000031.1; VDPT01000032.1; VDPT01000033.1; VDPT01000034.1; VDPT01000035.1; VDPT01000036.1; VDPT01000037.1; VDPT01000038.1; VDPT01000039.1; VDPT01000040.1; VDPT01000041.1; VDPT01000042.1; VDPT01000043.1; VDPT01000044.1; VDPT01000045.1; VDPT01000046.1; VDPT01000048.1; VDPT01000049.1; VDPT01000050.1; VDPT01000051.1; VDPT01000052.1; VDPT01000053.1; VDPT01000054.1; VDPT01000055.1; VDPT01000056.1; VDPT01000058.1; VDPT01000059.1; VDPT01000005.1; VDPT01000060.1; VDPT01000061.1; VDPT01000062.1; VDPT01000063.1; VDPT01000064.1; VDPT01000065.1; VDPT01000066.1; VDPT01000067.1; VDPT01000068.1; VDPT01000069.1; VDPT01000006.1; VDPT01000070.1; VDPT01000008.1

Compact view

VDPT01000012.1 - Region 1 - T3PKS

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Location: 74,684 - 104,030 nt. (total: 29,347 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDPT01000013.1 - Region 1 - terpene

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Location: 22,153 - 44,051 nt. (total: 21,899 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDPT01000015.1 - Region 1 - NRPS,NRPS-like,betalactone

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Location: 15,714 - 66,714 nt. (total: 51,001 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
betalactone: (HMGL-like and AMP-binding)
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 15713 - 66714:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 15713 - 56210:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 20585 - 66714:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_34

Search NORINE for peptide: strict or relaxed

AMP-binding (13..445): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gclhIAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg6_40

Search NORINE for peptide: strict or relaxed

AMP-binding (1..293): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

ctg6_43

Search NORINE for peptide: strict or relaxed

AMP-binding (463..864): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1502..1896): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

VDPT01000023.1 - Region 1 - NRPS

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Location: 33,480 - 59,672 nt. (total: 26,193 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 33479 - 59672:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg15_56

Search NORINE for peptide: strict or relaxed

AMP-binding (469..867): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

VDPT01000002.1 - Region 1 - glycocin

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Location: 260,560 - 280,730 nt. (total: 20,171 nt) Show pHMM detection rules used

glycocin: (glycocin or sublancin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

VDPT01000003.1 - Region 1 - terpene

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Location: 5,062 - 25,868 nt. (total: 20,807 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

VDPT01000047.1 - Region 1 - NRPS

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Location: 1 - 17,510 nt. (total: 17,510 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 17510:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg41_1

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1908): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFMMGMVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

VDPT01000004.1 - Region 1 - NRPS

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Location: 72,713 - 119,849 nt. (total: 47,137 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 72712 - 119849:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg44_95

Search NORINE for peptide: strict or relaxed

AMP-binding (463..861): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1519..1935): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg44_97

Search NORINE for peptide: strict or relaxed

AMP-binding (31..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

VDPT01000057.1 - Region 1 - NRPS

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Location: 1 - 8,974 nt. (total: 8,974 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 8974:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg52_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..864): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1501..1904): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

VDPT01000007.1 - Region 1 - other

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Location: 57,794 - 99,212 nt. (total: 41,419 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

VDPT01000007.1 - Region 2 - sactipeptide

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Location: 102,213 - 123,824 nt. (total: 21,612 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Putative Sactipeptide(s)

ctg68_115 leader / core peptide: MKKAVIVENK - GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

Sactipeptides

Core peptide predictions

ctg68_115: Putative sactipeptide; RODEO score: 32.0; Core sequence, approximate: GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

VDPT01000009.1 - Region 1 - CDPS

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Location: 1 - 16,025 nt. (total: 16,025 nt) Show pHMM detection rules used

Region on contig edge.

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.