GCA_007666795.1 - 12 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

VDPU01000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T3PKS	1	29,347

VDPU01000013.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	terpene	59,087	80,985

VDPU01000015.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NRPS-like,betalactone,NRPS	15,714	66,714	fengycin	NRP	93%

VDPU01000023.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	NRPS	1	26,193	surfactin	NRP:Lipopeptide	43%

VDPU01000002.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	glycocin	260,560	280,730	sublancin 168	RiPP:Lanthipeptide	100%

VDPU01000003.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	terpene	195,906	216,712

VDPU01000047.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS	1	17,510	surfactin	NRP:Lipopeptide	39%

VDPU01000004.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	NRPS	72,713	119,849	bacillibactin	NRP	100%

VDPU01000057.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	NRPS	1	8,974	surfactin	NRP:Lipopeptide	8%

VDPU01000007.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 68.1	other	57,794	99,212	bacilysin	Other	100%
Region 68.2	sactipeptide	102,213	123,824	subtilosin A	RiPP:Thiopeptide	100%

VDPU01000009.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	CDPS	1	16,025

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T3PKS	1	29,347
Region 4.1	terpene	59,087	80,985
Region 6.1	NRPS-like,betalactone,NRPS	15,714	66,714	fengycin	NRP	93%
Region 15.1	NRPS	1	26,193	surfactin	NRP:Lipopeptide	43%
Region 22.1	glycocin	260,560	280,730	sublancin 168	RiPP:Lanthipeptide	100%
Region 33.1	terpene	195,906	216,712
Region 41.1	NRPS	1	17,510	surfactin	NRP:Lipopeptide	39%
Region 44.1	NRPS	72,713	119,849	bacillibactin	NRP	100%
Region 52.1	NRPS	1	8,974	surfactin	NRP:Lipopeptide	8%
Region 68.1	other	57,794	99,212	bacilysin	Other	100%
Region 68.2	sactipeptide	102,213	123,824	subtilosin A	RiPP:Thiopeptide	100%
Region 70.1	CDPS	1	16,025

Compact view

VDPU01000012.1 - Region 1 - T3PKS

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Location: 1 - 29,347 nt. (total: 29,347 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDPU01000013.1 - Region 1 - terpene

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Location: 59,087 - 80,985 nt. (total: 21,899 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VDPU01000015.1 - Region 1 - NRPS,NRPS-like,betalactone

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Location: 15,714 - 66,714 nt. (total: 51,001 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
betalactone: (HMGL-like and AMP-binding)
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 15713 - 66714:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 15713 - 56210:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 20585 - 66714:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

VDPU01000023.1 - Region 1 - NRPS

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Location: 1 - 26,193 nt. (total: 26,193 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 26193:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

VDPU01000002.1 - Region 1 - glycocin

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Location: 260,560 - 280,730 nt. (total: 20,171 nt) Show pHMM detection rules used

glycocin: (glycocin or sublancin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

VDPU01000003.1 - Region 1 - terpene

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Location: 195,906 - 216,712 nt. (total: 20,807 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

VDPU01000047.1 - Region 1 - NRPS

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Location: 1 - 17,510 nt. (total: 17,510 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 17510:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

VDPU01000004.1 - Region 1 - NRPS

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Location: 72,713 - 119,849 nt. (total: 47,137 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 72712 - 119849:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

VDPU01000057.1 - Region 1 - NRPS

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Location: 1 - 8,974 nt. (total: 8,974 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 8974:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

VDPU01000007.1 - Region 1 - other

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Location: 57,794 - 99,212 nt. (total: 41,419 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

VDPU01000007.1 - Region 2 - sactipeptide

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Location: 102,213 - 123,824 nt. (total: 21,612 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Sactipeptides

Sactipeptide predictions

Putative Sactipeptide(s)

ctg68_115 leader / core peptide: MKKAVIVENK - GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

Sactipeptides

Core peptide predictions

ctg68_115: Putative sactipeptide; RODEO score: 32.0; Core sequence, approximate: GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

VDPU01000009.1 - Region 1 - CDPS

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Location: 1 - 16,025 nt. (total: 16,025 nt) Show pHMM detection rules used

Region on contig edge.

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.