GCA_008670815.1 - 2 region(s)

Identified primary metabolite regions

RQBC01000050.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate,Fumarate2succinate	SCFA	1	42,892	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

RQBC01000061.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Others_HGD_unassigned	Putative	1	16,444

No primary metabolite regions were found in these records:: RQBC01000012.1; RQBC01000033.1; RQBC01000020.1; RQBC01000038.1; RQBC01000018.1; RQBC01000035.1; RQBC01000028.1; RQBC01000011.1; RQBC01000004.1; RQBC01000005.1; RQBC01000059.1; RQBC01000051.1; RQBC01000056.1; RQBC01000037.1; RQBC01000042.1; RQBC01000047.1; RQBC01000014.1; RQBC01000003.1; RQBC01000069.1; RQBC01000053.1; RQBC01000019.1; RQBC01000001.1; RQBC01000064.1; RQBC01000010.1; RQBC01000040.1; RQBC01000070.1; RQBC01000023.1; RQBC01000006.1; RQBC01000075.1; RQBC01000043.1; RQBC01000025.1; RQBC01000068.1; RQBC01000034.1; RQBC01000029.1; RQBC01000058.1; RQBC01000015.1; RQBC01000055.1; RQBC01000024.1; RQBC01000078.1; RQBC01000009.1; RQBC01000008.1; RQBC01000077.1; RQBC01000076.1; RQBC01000044.1; RQBC01000030.1; RQBC01000007.1; RQBC01000027.1; RQBC01000071.1; RQBC01000002.1; RQBC01000022.1; RQBC01000021.1; RQBC01000065.1; RQBC01000057.1; RQBC01000031.1; RQBC01000032.1; RQBC01000046.1; RQBC01000039.1; RQBC01000062.1; RQBC01000016.1; RQBC01000054.1; RQBC01000045.1; RQBC01000048.1; RQBC01000066.1; RQBC01000041.1; RQBC01000060.1; RQBC01000072.1; RQBC01000074.1; RQBC01000036.1; RQBC01000013.1; RQBC01000049.1; RQBC01000067.1; RQBC01000073.1; RQBC01000017.1; RQBC01000052.1; RQBC01000063.1; RQBC01000026.1

Compact view

RQBC01000050.1 - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 42,892 nt. (total: 42,892 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

RQBC01000061.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 1 - 16,444 nt. (total: 16,444 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.