# emapper version: emapper-2.0.1b-2-g816e190 emapper DB: 2.0
# command: ./emapper.py  -i Bifidobacterium_pseudocatenulatum/1.contigAnn/FFN/A00000073.ffn --translate --temp_dir Bifidobacterium_pseudocatenulatum/4.eggNOG_mapper --output_dir Bifidobacterium_pseudocatenulatum/4.eggNOG_mapper --output A00000073 --cpu 36 --keep_mapping_files -m diamond
# time: Sun Jun  5 19:43:53 2022
#query_name	seed_eggNOG_ortholog	seed_ortholog_evalue	seed_ortholog_score	best_tax_level	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	taxonomic scope	eggNOG OGs	best eggNOG OG	COG Functional cat.	eggNOG free text desc.
DNDENEON_00001	547043.BIFPSEUDO_03578	1.7e-93	348.6	Bifidobacteriales				ko:K06199					ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3			Bacteria	2IJGQ@201174,4D11I@85004,COG0239@1,COG0239@2	NA|NA|NA	D	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DNDENEON_00002	547043.BIFPSEUDO_03579	3.2e-54	217.6	Bifidobacteriales	crcB	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425		ko:K06199					ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3			Bacteria	2IC26@201174,4D14T@85004,COG0239@1,COG0239@2	NA|NA|NA	U	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DNDENEON_00003	547043.BIFPSEUDO_03580	2.3e-58	231.5	Bifidobacteriales													Bacteria	2I2G2@201174,4D0RY@85004,COG0454@1,COG0454@2	NA|NA|NA	K	Acetyltransferase (GNAT) domain
DNDENEON_00005	547043.BIFPSEUDO_03582	7.3e-227	792.7	Bifidobacteriales	ilvE	GO:0000082,GO:0000278,GO:0003674,GO:0003824,GO:0004084,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006573,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008283,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009081,GO:0009082,GO:0009083,GO:0009098,GO:0009099,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0022402,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607,GO:1903047	2.6.1.42	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R10991	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	2GKJ1@201174,4CZD9@85004,COG0115@1,COG0115@2	NA|NA|NA	E	Amino-transferase class IV
DNDENEON_00006	547043.BIFPSEUDO_03584	1.1e-133	482.6	Bifidobacteriales		GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944											Bacteria	2GMI4@201174,4CZ51@85004,COG2860@1,COG2860@2	NA|NA|NA	S	UPF0126 domain
DNDENEON_00007	547043.BIFPSEUDO_03585	2.9e-33	147.5	Bifidobacteriales	rpsT	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030234,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0042979,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0065003,GO:0065007,GO:0065009,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02968	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQ73@201174,4D18U@85004,COG0268@1,COG0268@2	NA|NA|NA	J	Binds directly to 16S ribosomal RNA
DNDENEON_00008	547043.BIFPSEUDO_03586	0.0	1240.7	Bifidobacteriales	lepA	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944		ko:K03596	ko05134,map05134				ko00000,ko00001				Bacteria	2GJAB@201174,4CYWI@85004,COG0481@1,COG0481@2	NA|NA|NA	M	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
DNDENEON_00009	547043.BIFPSEUDO_03588	3e-234	817.4	Bifidobacteriales	hemN	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576										iNJ661.Rv2388c	Bacteria	2GJXX@201174,4CZ81@85004,COG0635@1,COG0635@2	NA|NA|NA	H	Involved in the biosynthesis of porphyrin-containing compound
DNDENEON_00010	547043.BIFPSEUDO_03589	5e-145	520.4	Bifidobacteriales													Bacteria	2GIX2@201174,4D0FH@85004,COG1028@1,COG1028@2	NA|NA|NA	IQ	Oxidoreductase, short chain dehydrogenase reductase family protein
DNDENEON_00011	547043.BIFPSEUDO_03590	7.6e-288	995.7	Bifidobacteriales	luxC		1.2.1.50	ko:K03400	ko02020,ko02024,map02020,map02024		R10549	RC00004,RC00184	ko00000,ko00001,ko01000				Bacteria	2HZAQ@201174,4CZDA@85004,COG1012@1,COG1012@2	NA|NA|NA	C	Acyl-CoA reductase (LuxC)
DNDENEON_00012	547043.BIFPSEUDO_03591	2.1e-218	764.6	Bifidobacteriales	luxE		6.2.1.19	ko:K06046	ko02020,ko02024,map02020,map02024				ko00000,ko00001,ko01000				Bacteria	2HZHX@201174,4D0HV@85004,COG1541@1,COG1541@2	NA|NA|NA	H	long-chain-fatty-acid--luciferin-component ligase, acyl-protein synthase
DNDENEON_00013	547043.BIFPSEUDO_03592	8.7e-235	819.3	Bifidobacteriales				ko:K03458					ko00000	2.A.40			Bacteria	2GV9H@201174,4CZYX@85004,COG2233@1,COG2233@2	NA|NA|NA	F	Psort location CytoplasmicMembrane, score 10.00
DNDENEON_00014	547043.BIFPSEUDO_03593	0.0	3061.9	Bifidobacteriales	gltB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.4.1.13,1.4.1.14,1.4.7.1	ko:K00265,ko:K00284	ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230		R00021,R00093,R00114,R00248,R10086	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000				Bacteria	2GN09@201174,4CZB8@85004,COG0067@1,COG0067@2,COG0069@1,COG0069@2,COG0070@1,COG0070@2	NA|NA|NA	E	glutamate synthase NADPH large subunit
DNDENEON_00015	547043.BIFPSEUDO_03594	2.2e-306	1057.4	Bifidobacteriales	gltD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944	1.4.1.13,1.4.1.14	ko:K00266	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230		R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000			iJN678.gltD,iNJ661.Rv3858c,iSB619.SA_RS02450	Bacteria	2GJ0A@201174,4CZ7B@85004,COG0493@1,COG0493@2	NA|NA|NA	C	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
DNDENEON_00016	401473.BDP_1080	2e-74	285.0	Bifidobacteriales													Bacteria	2BI32@1,2IDD6@201174,32C84@2,4D0PC@85004	NA|NA|NA		
DNDENEON_00017	547043.BIFPSEUDO_03596	2.2e-248	864.4	Bifidobacteriales	glgA	GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0071704,GO:1901576	2.4.1.342	ko:K16148	ko00500,ko01100,map00500,map01100		R02421,R11530	RC00005,RC00049,RC02748	ko00000,ko00001,ko01000,ko01003		GT4		Bacteria	2I2EE@201174,4CZKY@85004,COG0297@1,COG0297@2	NA|NA|NA	G	Starch synthase catalytic domain
DNDENEON_00018	547043.BIFPSEUDO_03598	4.2e-158	563.9	Bifidobacteriales	modF	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363	3.6.3.21,3.6.3.34	ko:K02013,ko:K02028,ko:K05776	ko02010,map02010	M00189,M00236,M00240			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.14,3.A.1.3			Bacteria	2GIXX@201174,4CZDS@85004,COG1119@1,COG1119@2	NA|NA|NA	P	ATPases associated with a variety of cellular activities
DNDENEON_00019	547043.BIFPSEUDO_03599	1.8e-198	698.4	Bifidobacteriales	trmI	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016426,GO:0016429,GO:0016740,GO:0016741,GO:0030488,GO:0031515,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234	2.1.1.219,2.1.1.220	ko:K07442					ko00000,ko01000,ko03016				Bacteria	2GJPD@201174,4CYUG@85004,COG2519@1,COG2519@2	NA|NA|NA	J	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
DNDENEON_00020	547043.BIFPSEUDO_03600	4.5e-100	370.5	Bifidobacteriales	sixA		3.6.1.55	ko:K03574,ko:K08296					ko00000,ko01000,ko03400				Bacteria	2GJ0I@201174,4D05N@85004,COG2062@1,COG2062@2	NA|NA|NA	T	Phosphoglycerate mutase family
DNDENEON_00021	547043.BIFPSEUDO_03601	0.0	1535.0	Bifidobacteriales	metE	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003871,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0030312,GO:0032259,GO:0034641,GO:0035999,GO:0036211,GO:0040007,GO:0042084,GO:0042085,GO:0042558,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0050667,GO:0051186,GO:0071704,GO:0071944,GO:0140096,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000			iE2348C_1286.E2348C_4130,iECO103_1326.ECO103_4334,iECO111_1330.ECO111_4657,iECO26_1355.ECO26_4756,iECW_1372.ECW_m4131,iEKO11_1354.EKO11_4528,iPC815.YPO3788,iWFL_1372.ECW_m4131	Bacteria	2GIXA@201174,4CYWM@85004,COG0620@1,COG0620@2	NA|NA|NA	E	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DNDENEON_00022	547043.BIFPSEUDO_03602	1.6e-157	562.0	Bifidobacteriales	metF	GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	1.5.1.20	ko:K00297,ko:K21010	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,ko02025,map00670,map00720,map01100,map01120,map01200,map01523,map02025	M00377	R01224,R07168	RC00081	ko00000,ko00001,ko00002,ko01000			iPC815.YPO0117,iSBO_1134.SBO_3961	Bacteria	2GJTN@201174,4CZ22@85004,COG0685@1,COG0685@2	NA|NA|NA	E	Methylenetetrahydrofolate reductase
DNDENEON_00023	566552.BIFCAT_00848	0.0	2002.3	Bifidobacteriales	glnE	GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698	2.7.7.42,2.7.7.89	ko:K00982					ko00000,ko01000				Bacteria	2GJ91@201174,4CYQE@85004,COG1391@1,COG1391@2	NA|NA|NA	H	Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell
DNDENEON_00024	547043.BIFPSEUDO_03604	3e-187	661.0	Bifidobacteriales	pyrB	GO:0003674,GO:0003824,GO:0004070,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.3.2	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R01397	RC00064,RC02850	ko00000,ko00001,ko00002,ko01000			iZ_1308.Z5856	Bacteria	2GKNA@201174,4CYZR@85004,COG0540@1,COG0540@2	NA|NA|NA	F	Belongs to the ATCase OTCase family
DNDENEON_00025	547043.BIFPSEUDO_03605	4.2e-74	283.9	Bifidobacteriales	pyrI	GO:0003674,GO:0003824,GO:0004070,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.3.2	ko:K00608,ko:K00610	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R01397	RC00064,RC02850	ko00000,ko00001,ko00002,ko01000				Bacteria	2IFDF@201174,4D0QN@85004,COG1781@1,COG1781@2	NA|NA|NA	F	Aspartate carbamoyltransferase regulatory chain, allosteric domain protein
DNDENEON_00026	547043.BIFPSEUDO_03606	1.5e-277	961.4	Bifidobacteriales	pyrC	GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ0T@201174,4CZIW@85004,COG0044@1,COG0044@2	NA|NA|NA	F	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
DNDENEON_00027	547043.BIFPSEUDO_03607	1.6e-177	628.6	Bifidobacteriales	pyrF	GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.4.2.10,4.1.1.23	ko:K01591,ko:K13421	ko00240,ko00983,ko01100,map00240,map00983,map01100	M00051	R00965,R01870,R08231	RC00063,RC00409,RC00611	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS17585	Bacteria	2GKWK@201174,4CZAK@85004,COG0284@1,COG0284@2	NA|NA|NA	F	Belongs to the OMP decarboxylase family. Type 2 subfamily
DNDENEON_00028	547043.BIFPSEUDO_03608	9.3e-155	552.7	Bifidobacteriales	pyrK		1.18.1.2,1.19.1.1,1.4.1.13,1.4.1.14	ko:K00266,ko:K00528,ko:K02823	ko00240,ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00240,map00250,map00910,map01100,map01110,map01120,map01130,map01230		R00093,R00114,R00248,R10159	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000				Bacteria	2HQ24@201174,4CZC1@85004,COG0543@1,COG0543@2	NA|NA|NA	C	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
DNDENEON_00029	547043.BIFPSEUDO_03609	6.6e-179	633.3	Bifidobacteriales	pyrD		1.3.1.14,1.3.98.1	ko:K00226,ko:K02823,ko:K17828	ko00240,ko01100,map00240,map01100	M00051	R01867,R01869	RC00051	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKC6@201174,4CYU2@85004,COG0167@1,COG0167@2	NA|NA|NA	F	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
DNDENEON_00030	547043.BIFPSEUDO_03610	2.7e-123	448.0	Bifidobacteriales	pyrE		2.4.2.10	ko:K00762	ko00240,ko01100,map00240,map01100	M00051	R01870	RC00611	ko00000,ko00001,ko00002,ko01000				Bacteria	2GM5A@201174,4CZHB@85004,COG0461@1,COG0461@2	NA|NA|NA	F	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DNDENEON_00031	547043.BIFPSEUDO_03611	2.9e-162	577.8	Bifidobacteriales	cpsY												Bacteria	2HZCU@201174,4CZT8@85004,COG0583@1,COG0583@2	NA|NA|NA	K	Bacterial regulatory helix-turn-helix protein, lysR family
DNDENEON_00032	547043.BIFPSEUDO_03613	0.0	1766.1	Bifidobacteriales	thiC	GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016020,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0040007,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.3,2.7.1.49,2.7.4.7,4.1.99.17	ko:K00788,ko:K03147,ko:K14153	ko00730,ko01100,map00730,map01100	M00127	R03223,R03471,R03472,R04509,R10712	RC00002,RC00017,RC00224,RC03251,RC03252,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000			iYO844.BSU08790,iYO844.BSU38290	Bacteria	2GJ3Y@201174,4D2W5@85004,COG0352@1,COG0352@2,COG0422@1,COG0422@2	NA|NA|NA	H	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DNDENEON_00033	547043.BIFPSEUDO_03614	8.8e-109	399.4	Bifidobacteriales													Bacteria	2HZBU@201174,4CZN2@85004,COG1670@1,COG1670@2	NA|NA|NA	J	Acetyltransferase (GNAT) domain
DNDENEON_00034	547043.BIFPSEUDO_03615	6.1e-69	266.5	Bifidobacteriales	arsC		1.20.4.1	ko:K03741					ko00000,ko01000				Bacteria	2IHR3@201174,4D1A6@85004,COG0394@1,COG0394@2	NA|NA|NA	T	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DNDENEON_00035	547043.BIFPSEUDO_03616	2.5e-219	767.7	Bifidobacteriales	yxjG_1												Bacteria	2I9RI@201174,4CZKN@85004,COG0620@1,COG0620@2	NA|NA|NA	E	Psort location Cytoplasmic, score 8.87
DNDENEON_00036	547043.BIFPSEUDO_03617	6.1e-122	443.4	Bifidobacteriales	maa		2.3.1.18,2.3.1.79	ko:K00633,ko:K00661					ko00000,ko01000				Bacteria	2GNUB@201174,4CZ5H@85004,COG0110@1,COG0110@2	NA|NA|NA	S	Maltose acetyltransferase
DNDENEON_00037	547043.BIFPSEUDO_03618	1.8e-50	204.9	Bifidobacteriales	sdpR	GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044212,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141		ko:K03892					ko00000,ko03000				Bacteria	2IM1K@201174,4D14N@85004,COG0640@1,COG0640@2	NA|NA|NA	K	helix_turn_helix, Arsenical Resistance Operon Repressor
DNDENEON_00038	547043.BIFPSEUDO_03619	1.4e-139	502.3	Bifidobacteriales													Bacteria	2ID8C@201174,4D18Z@85004,COG5658@1,COG5658@2	NA|NA|NA	S	SdpI/YhfL protein family
DNDENEON_00039	547043.BIFPSEUDO_03620	2.1e-109	401.7	Bifidobacteriales			3.8.1.2	ko:K01560,ko:K07025	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120		R05287	RC00697	ko00000,ko00001,ko01000				Bacteria	2I8XE@201174,4D00B@85004,COG1011@1,COG1011@2	NA|NA|NA	S	Haloacid dehalogenase-like hydrolase
DNDENEON_00040	547043.BIFPSEUDO_03621	0.0	1147.9	Bifidobacteriales	nnrD	GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0052855,GO:0052856,GO:0052857	4.2.1.136,5.1.99.6	ko:K17758,ko:K17759					ko00000,ko01000				Bacteria	2GJHB@201174,4CZC5@85004,COG0062@1,COG0062@2,COG0063@1,COG0063@2	NA|NA|NA	H	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DNDENEON_00041	547043.BIFPSEUDO_03622	5e-125	453.8	Bifidobacteriales	XK27_06785			ko:K02003,ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GJQV@201174,4CYT2@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter
DNDENEON_00043	547043.BIFPSEUDO_03625	1.6e-61	241.9	Bifidobacteriales													Bacteria	2A3Y6@1,2IM76@201174,30SGI@2,4D10Z@85004	NA|NA|NA		
DNDENEON_00044	566552.BIFCAT_00825	3.3e-96	357.8	Bifidobacteriales													Bacteria	2IQ64@201174,4D199@85004,COG0739@1,COG0739@2	NA|NA|NA	M	Peptidase family M23
DNDENEON_00045	547043.BIFPSEUDO_03627	0.0	1199.1	Bifidobacteriales	fadD1		6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1			Bacteria	2GIXQ@201174,4CYYC@85004,COG1022@1,COG1022@2	NA|NA|NA	I	AMP-binding enzyme
DNDENEON_00046	547043.BIFPSEUDO_03628	1.1e-268	932.2	Bifidobacteriales				ko:K10439,ko:K10546	ko02010,ko02030,map02010,map02030	M00212,M00216			ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19,3.A.1.2.5			Bacteria	2HZAK@201174,4CZCR@85004,COG4213@1,COG4213@2	NA|NA|NA	G	ABC transporter substrate-binding protein
DNDENEON_00047	547043.BIFPSEUDO_03629	5.3e-231	806.6	Bifidobacteriales	icd	GO:0000287,GO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006081,GO:0006082,GO:0006091,GO:0006097,GO:0006099,GO:0006101,GO:0006102,GO:0008150,GO:0008152,GO:0008270,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044464,GO:0045333,GO:0046487,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:0071944,GO:0072350	1.1.1.42	ko:K00031	ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146	M00009,M00010,M00173,M00740	R00267,R00268,R01899	RC00001,RC00084,RC00114,RC00626,RC02801	br01601,ko00000,ko00001,ko00002,ko01000				Bacteria	2GM3D@201174,4CZ8V@85004,COG0538@1,COG0538@2	NA|NA|NA	C	Belongs to the isocitrate and isopropylmalate dehydrogenases family
DNDENEON_00048	547043.BIFPSEUDO_03630	8.1e-210	736.1	Bifidobacteriales	guaB	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	1.1.1.205	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	M00050	R01130,R08240	RC00143,RC02207	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GKVS@201174,4CZDK@85004,COG0516@1,COG0516@2	NA|NA|NA	F	IMP dehydrogenase family protein
DNDENEON_00049	547043.BIFPSEUDO_03631	6.1e-108	396.7	Bifidobacteriales	dnaQ		2.7.7.7	ko:K02342,ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2I2FU@201174,4D10C@85004,COG2176@1,COG2176@2	NA|NA|NA	L	Exonuclease, DNA polymerase III, epsilon subunit family
DNDENEON_00050	547043.BIFPSEUDO_03634	9e-72	276.2	Bifidobacteriales				ko:K06956					ko00000				Bacteria	2I862@201174,4D08P@85004,COG1823@1,COG1823@2	NA|NA|NA	U	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
DNDENEON_00051	547043.BIFPSEUDO_03635	2.6e-242	844.3	Bifidobacteriales	glmU	GO:0000270,GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0003977,GO:0005488,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006629,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0019134,GO:0022610,GO:0030203,GO:0030260,GO:0033692,GO:0034637,GO:0034645,GO:0035635,GO:0040007,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044650,GO:0046872,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509	2.3.1.157,2.7.7.23	ko:K04042,ko:K11528,ko:K16203	ko00520,ko01100,ko01130,map00520,map01100,map01130	M00362	R00416,R05332	RC00002,RC00004,RC00166	ko00000,ko00001,ko00002,ko01000,ko01002	3.A.1.5.2		iJN678.glmU,iLJ478.TM1629	Bacteria	2GJS1@201174,4CZ4C@85004,COG1207@1,COG1207@2	NA|NA|NA	M	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DNDENEON_00052	547043.BIFPSEUDO_03636	6.2e-67	260.0	Bifidobacteriales	rsfS	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113	2.7.7.18	ko:K00969,ko:K09710	ko00760,ko01100,map00760,map01100	M00115	R00137,R03005	RC00002	ko00000,ko00001,ko00002,ko01000,ko03009				Bacteria	2IKZ3@201174,4D11U@85004,COG0799@1,COG0799@2	NA|NA|NA	J	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
DNDENEON_00053	547043.BIFPSEUDO_03637	9.5e-143	512.7	Bifidobacteriales			3.1.3.85,5.4.2.11,5.4.2.12	ko:K01834,ko:K15634,ko:K22306	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147				Bacteria	2GJYU@201174,4CYXK@85004,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
DNDENEON_00054	547043.BIFPSEUDO_03638	2.1e-117	429.1	Bifidobacteriales													Bacteria	2DQFC@1,2I8B6@201174,336HV@2,4D309@85004	NA|NA|NA		
DNDENEON_00056	547043.BIFPSEUDO_03641	6.5e-232	809.7	Bifidobacteriales	XK27_00240												Bacteria	2HZGJ@201174,4D0D3@85004,COG1510@1,COG1510@2,COG3177@1,COG3177@2	NA|NA|NA	K	Fic/DOC family
DNDENEON_00057	547043.BIFPSEUDO_03644	2.7e-70	271.2	Bifidobacteriales	pdxH			ko:K07006					ko00000				Bacteria	2IJK2@201174,4D0W8@85004,COG3576@1,COG3576@2	NA|NA|NA	S	Pfam:Pyridox_oxidase
DNDENEON_00058	547043.BIFPSEUDO_03646	2.7e-302	1043.9	Bifidobacteriales													Bacteria	2HVUZ@201174,4CZTB@85004,COG4932@1,COG4932@2	NA|NA|NA	M	domain protein
DNDENEON_00059	547043.BIFPSEUDO_03647	5.6e-83	313.5	Bifidobacteriales			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	2GNWT@201174,4D223@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_00060	547043.BIFPSEUDO_03647	5.2e-65	253.4	Bifidobacteriales			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	2GNWT@201174,4D223@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_00061	547043.BIFPSEUDO_03648	1.5e-163	582.0	Bifidobacteriales			3.1.3.85,5.4.2.11,5.4.2.12	ko:K01834,ko:K15634,ko:K22306	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147				Bacteria	2GJYU@201174,4CZI8@85004,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
DNDENEON_00062	547043.BIFPSEUDO_03649	5.7e-172	610.1	Bifidobacteriales	corA			ko:K03284					ko00000,ko02000	1.A.35.1,1.A.35.3			Bacteria	2HZ8V@201174,4CYWX@85004,COG0598@1,COG0598@2	NA|NA|NA	P	CorA-like Mg2+ transporter protein
DNDENEON_00063	566552.BIFCAT_00803	1.5e-142	512.3	Bifidobacteriales				ko:K10005	ko02010,map02010	M00233			ko00000,ko00001,ko00002,ko02000	3.A.1.3.9			Bacteria	2I9PU@201174,4D09U@85004,COG0834@1,COG0834@2	NA|NA|NA	ET	Bacterial periplasmic substrate-binding proteins
DNDENEON_00064	547043.BIFPSEUDO_03651	0.0	2062.3	Bifidobacteriales	leuS	GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.4	ko:K01869	ko00970,map00970	M00359,M00360	R03657	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029				Bacteria	2GJI1@201174,4CZHV@85004,COG0495@1,COG0495@2	NA|NA|NA	J	Belongs to the class-I aminoacyl-tRNA synthetase family
DNDENEON_00065	547043.BIFPSEUDO_03652	3.7e-92	344.7	Bifidobacteriales	comEA		2.4.1.21	ko:K00703,ko:K02237,ko:K02238	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	M00429,M00565	R02421	RC00005	ko00000,ko00001,ko00002,ko01000,ko01003,ko02044	3.A.11.1,3.A.11.2	GT5		Bacteria	2IQDC@201174,4D176@85004,COG1555@1,COG1555@2	NA|NA|NA	L	Helix-hairpin-helix motif
DNDENEON_00066	547043.BIFPSEUDO_03653	0.0	1123.2	Bifidobacteriales	comE			ko:K02238		M00429			ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2			Bacteria	2GJGR@201174,4CZ6X@85004,COG0658@1,COG0658@2	NA|NA|NA	S	Competence protein
DNDENEON_00067	547043.BIFPSEUDO_03654	6.5e-179	633.3	Bifidobacteriales	holA		2.7.7.7	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2GNMZ@201174,4CZ07@85004,COG1466@1,COG1466@2	NA|NA|NA	L	DNA polymerase III delta subunit
DNDENEON_00068	566552.BIFCAT_00798	9.2e-94	349.7	Bifidobacteriales	ydiB	GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360	2.7.1.221,5.1.1.1	ko:K01775,ko:K06925,ko:K07102	ko00473,ko00520,ko01100,ko01502,map00473,map00520,map01100,map01502		R00401,R08968,R11024	RC00002,RC00078,RC00285	ko00000,ko00001,ko01000,ko01011,ko03016				Bacteria	2IKV2@201174,4D0PH@85004,COG0802@1,COG0802@2	NA|NA|NA	S	Threonylcarbamoyl adenosine biosynthesis protein TsaE
DNDENEON_00069	547043.BIFPSEUDO_03657	1.3e-148	532.3	Bifidobacteriales	yeaZ	GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0071944,GO:0090304,GO:0140096,GO:1901360,GO:1901564	2.3.1.234	ko:K01409,ko:K14742			R10648	RC00070,RC00416	ko00000,ko01000,ko03016				Bacteria	2GMTM@201174,4D0A2@85004,COG1214@1,COG1214@2	NA|NA|NA	O	Glycoprotease family
DNDENEON_00070	547043.BIFPSEUDO_03658	2.6e-103	381.3	Bifidobacteriales	rimI	GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008999,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017189,GO:0018193,GO:0018194,GO:0019538,GO:0031365,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564	2.3.1.128,2.3.1.234	ko:K01409,ko:K03789,ko:K14742			R10648	RC00070,RC00416	ko00000,ko01000,ko03009,ko03016				Bacteria	2IM9R@201174,4D0Q0@85004,COG0454@1,COG0456@2	NA|NA|NA	K	FR47-like protein
DNDENEON_00071	547043.BIFPSEUDO_03659	3.1e-195	687.6	Bifidobacteriales	tsaD	GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564	2.3.1.234	ko:K01409,ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	R10648	RC00070,RC00416	ko00000,ko00001,ko00002,ko01000,ko02044,ko03016	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4			Bacteria	2GJ98@201174,4CZ0K@85004,COG0533@1,COG0533@2	NA|NA|NA	O	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DNDENEON_00073	657322.FPR_07630	2.6e-119	434.9	Ruminococcaceae	yoaP												Bacteria	1TRN6@1239,2484V@186801,3WGHV@541000,COG1246@1,COG1246@2	NA|NA|NA	E	YoaP-like
DNDENEON_00074	547043.BIFPSEUDO_03662	4.5e-185	653.7	Bifidobacteriales	cbh		3.5.1.24	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100		R02797,R03975,R03977,R04486,R04487,R05835	RC00090,RC00096	ko00000,ko00001,ko01000				Bacteria	2GK9Z@201174,4CZNU@85004,COG3049@1,COG3049@2	NA|NA|NA	M	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
DNDENEON_00075	547043.BIFPSEUDO_03663	5.3e-119	433.7	Bifidobacteriales	ykoE			ko:K16925		M00582			ko00000,ko00002,ko02000	3.A.1.30			Bacteria	2H5VZ@201174,4CZ6M@85004,COG4721@1,COG4721@2	NA|NA|NA	S	ABC-type cobalt transport system, permease component
DNDENEON_00076	547043.BIFPSEUDO_03666	6.7e-72	276.6	Bifidobacteriales													Bacteria	2HZK3@201174,4D0RM@85004,COG0789@1,COG0789@2	NA|NA|NA	K	MerR family regulatory protein
DNDENEON_00077	547043.BIFPSEUDO_03667	4.6e-199	700.3	Bifidobacteriales	adhB		1.1.1.1,1.1.1.14	ko:K00001,ko:K00008	ko00010,ko00040,ko00051,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00040,map00051,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	M00014	R00623,R00754,R00875,R01896,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00085,RC00087,RC00088,RC00099,RC00102,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko00002,ko01000				Bacteria	2GISW@201174,4CZJY@85004,COG1063@1,COG1063@2	NA|NA|NA	C	Zinc-binding dehydrogenase
DNDENEON_00078	547043.BIFPSEUDO_03668	2.4e-144	518.1	Bifidobacteriales			4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220		R03470	RC00938	ko00000,ko00001,ko01000				Bacteria	2GITB@201174,4CZBK@85004,COG0599@1,COG0599@2	NA|NA|NA	S	Carboxymuconolactone decarboxylase family
DNDENEON_00079	547043.BIFPSEUDO_03669	6e-221	773.1	Bifidobacteriales	yxjG_1												Bacteria	2I9RI@201174,4CZKN@85004,COG0620@1,COG0620@2	NA|NA|NA	E	Psort location Cytoplasmic, score 8.87
DNDENEON_00080	547043.BIFPSEUDO_03670	3.6e-76	290.8	Bifidobacteriales													Bacteria	2II4Y@201174,4D0YG@85004,COG2246@1,COG2246@2	NA|NA|NA	S	Psort location CytoplasmicMembrane, score
DNDENEON_00081	547043.BIFPSEUDO_03671	1e-182	646.0	Bifidobacteriales	cat												Bacteria	2GKSG@201174,4D05T@85004,COG0053@1,COG0053@2	NA|NA|NA	P	Cation efflux family
DNDENEON_00084	547043.BIFPSEUDO_03674	1e-98	366.7	Bifidobacteriales				ko:K03646					ko00000,ko02000	2.C.1.2			Bacteria	2DDMI@1,2ICIR@201174,2ZIJN@2,4D112@85004	NA|NA|NA		
DNDENEON_00085	547043.BIFPSEUDO_03675	2.9e-130	471.5	Bifidobacteriales													Bacteria	2BAGB@1,2H8N0@201174,323WV@2,4D2EW@85004	NA|NA|NA		
DNDENEON_00086	547043.BIFPSEUDO_03676	5.7e-146	523.5	Bifidobacteriales	mazG	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0022607,GO:0030312,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0035539,GO:0042454,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044464,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0047693,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658	3.6.1.66	ko:K02428	ko00230,map00230		R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000				Bacteria	2GNKC@201174,4CZ9U@85004,COG1694@1,COG3956@2	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00087	547043.BIFPSEUDO_03678	6.7e-278	962.6	Bifidobacteriales	pepC	GO:0000096,GO:0000098,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006508,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009063,GO:0009636,GO:0009987,GO:0016054,GO:0016787,GO:0019538,GO:0019752,GO:0042221,GO:0043170,GO:0043418,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0050667,GO:0050896,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	3.4.22.40	ko:K01372					ko00000,ko01000,ko01002				Bacteria	2HCVR@201174,4CZD8@85004,COG3579@1,COG3579@2	NA|NA|NA	E	Peptidase C1-like family
DNDENEON_00088	547043.BIFPSEUDO_03679	1e-173	615.9	Bifidobacteriales				ko:K02806	ko02060,map02060				ko00000,ko00001,ko01000,ko02000				Bacteria	2HZMJ@201174,4D0Y3@85004,COG0517@1,COG0517@2	NA|NA|NA	S	IMP dehydrogenase activity
DNDENEON_00089	547043.BIFPSEUDO_03680	1.3e-298	1031.6	Bifidobacteriales	ybiT												Bacteria	2GKQ4@201174,4CYS2@85004,COG0488@1,COG0488@2	NA|NA|NA	S	ABC transporter
DNDENEON_00090	547043.BIFPSEUDO_03681	4.7e-111	407.1	Bifidobacteriales	pncA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008936,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0018130,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043094,GO:0043173,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.11.1,3.5.1.19	ko:K08281,ko:K12132	ko00760,ko01100,map00760,map01100		R01268	RC00100	ko00000,ko00001,ko01000,ko01001			iE2348C_1286.E2348C_1895,iECs_1301.ECs2475,iZ_1308.Z2802	Bacteria	2IFQW@201174,4CYTT@85004,COG1335@1,COG1335@2	NA|NA|NA	Q	Isochorismatase family
DNDENEON_00091	547043.BIFPSEUDO_03682	2.8e-66	257.7	Bifidobacteriales	ogt		2.1.1.63	ko:K00567,ko:K07443,ko:K07452					ko00000,ko01000,ko02048,ko03400				Bacteria	2IHXW@201174,4D10F@85004,COG0350@1,COG0350@2	NA|NA|NA	L	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DNDENEON_00093	547043.BIFPSEUDO_03685	2e-13	80.5	Bifidobacteriales													Bacteria	2B5HZ@1,2H0JJ@201174,31YCP@2,4D1QQ@85004	NA|NA|NA		
DNDENEON_00094	547043.BIFPSEUDO_03686	7.6e-273	946.0	Bifidobacteriales													Bacteria	2ETEZ@1,2HXGA@201174,33KYW@2,4CZSC@85004	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00095	547043.BIFPSEUDO_03687	4.7e-140	503.8	Bifidobacteriales													Bacteria	2APK1@1,2IEAB@201174,31EP8@2,4D0C3@85004	NA|NA|NA	S	Domain of unknown function (DUF4194)
DNDENEON_00096	547043.BIFPSEUDO_03688	0.0	1832.4	Bifidobacteriales													Bacteria	2GMIP@201174,4CYWR@85004,COG4913@1,COG4913@2	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00097	547043.BIFPSEUDO_03689	1e-218	765.8	Bifidobacteriales													Bacteria	2IB33@201174,4D02A@85004,COG4924@1,COG4924@2	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00098	547043.BIFPSEUDO_03690	0.0	2009.2	Bifidobacteriales	uvrA	GO:0000018,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009892,GO:0009987,GO:0010605,GO:0016020,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031324,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0045910,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051716,GO:0060255,GO:0060542,GO:0060543,GO:0065007,GO:0071944,GO:0080090		ko:K03701	ko03420,map03420				ko00000,ko00001,ko03400				Bacteria	2GJUV@201174,4CYRU@85004,COG0178@1,COG0178@2	NA|NA|NA	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
DNDENEON_00099	547043.BIFPSEUDO_03691	0.0	1499.2	Bifidobacteriales	uvrC	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009380,GO:0009381,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016787,GO:0016788,GO:0030312,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902494,GO:1905347,GO:1905348,GO:1990391		ko:K03703	ko03420,map03420				ko00000,ko00001,ko03400				Bacteria	2GIS4@201174,4CYVX@85004,COG0322@1,COG0322@2	NA|NA|NA	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
DNDENEON_00100	547043.BIFPSEUDO_03692	6e-182	643.3	Bifidobacteriales	aroE	GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413	RC00206	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv2552c	Bacteria	2GPQQ@201174,4CZCM@85004,COG0169@1,COG0169@2	NA|NA|NA	E	Shikimate dehydrogenase substrate binding domain
DNDENEON_00101	547043.BIFPSEUDO_03693	1.1e-170	605.9	Bifidobacteriales	rapZ	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0034641,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363		ko:K06958					ko00000,ko03019				Bacteria	2GMWB@201174,4CZ70@85004,COG1660@1,COG1660@2	NA|NA|NA	S	Displays ATPase and GTPase activities
DNDENEON_00102	547043.BIFPSEUDO_03694	1.3e-171	609.0	Bifidobacteriales	whiA	GO:0008150,GO:0043937,GO:0050789,GO:0050793,GO:0065007		ko:K09762					ko00000				Bacteria	2GJZU@201174,4CYTD@85004,COG1481@1,COG1481@2	NA|NA|NA	K	May be required for sporulation
DNDENEON_00103	547043.BIFPSEUDO_03695	1.9e-220	771.5	Bifidobacteriales	pgk	GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.2.3,5.3.1.1	ko:K00927,ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01015,R01512	RC00002,RC00043,RC00423	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GJC6@201174,4CZJ3@85004,COG0126@1,COG0126@2	NA|NA|NA	F	Phosphoglycerate kinase
DNDENEON_00104	547043.BIFPSEUDO_03696	9.6e-149	532.7	Bifidobacteriales	tpiA	GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616	2.7.2.3,5.3.1.1	ko:K00927,ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01015,R01512	RC00002,RC00043,RC00423	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GJXZ@201174,4CYSG@85004,COG0149@1,COG0149@2	NA|NA|NA	G	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
DNDENEON_00105	547043.BIFPSEUDO_03697	2.4e-32	144.4	Bifidobacteriales	secG	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680		ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2			Bacteria	2GR31@201174,4D16U@85004,COG1314@1,COG1314@2	NA|NA|NA	U	Preprotein translocase SecG subunit
DNDENEON_00106	547043.BIFPSEUDO_03698	3.3e-163	580.9	Bifidobacteriales													Bacteria	2HZYB@201174,4CZQW@85004,COG0561@1,COG0561@2	NA|NA|NA	S	Sucrose-6F-phosphate phosphohydrolase
DNDENEON_00107	547043.BIFPSEUDO_03699	8e-301	1038.9	Bifidobacteriales	alaA	GO:0003674,GO:0003824,GO:0004021,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006090,GO:0006520,GO:0006522,GO:0006523,GO:0006807,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009078,GO:0009079,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016769,GO:0019272,GO:0019752,GO:0019842,GO:0030170,GO:0030632,GO:0032787,GO:0033554,GO:0036094,GO:0040007,GO:0042221,GO:0042851,GO:0042852,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046144,GO:0046145,GO:0046394,GO:0046416,GO:0046436,GO:0046437,GO:0046677,GO:0047635,GO:0048037,GO:0050662,GO:0050896,GO:0051716,GO:0070279,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.6.1.2,2.6.1.66	ko:K00814,ko:K14260	ko00220,ko00250,ko00290,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00220,map00250,map00290,map00710,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00171	R00258,R01215	RC00006,RC00008,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007			iNJ661.Rv0337c	Bacteria	2GJ7R@201174,4CZVJ@85004,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase, class I II
DNDENEON_00108	1437608.BBIA_1518	7.1e-09	66.2	Bifidobacteriales	pnuC			ko:K03811					ko00000,ko02000	4.B.1.1			Bacteria	2IBT8@201174,4D03Z@85004,COG3201@1,COG3201@2	NA|NA|NA	H	Nicotinamide mononucleotide transporter
DNDENEON_00109	547043.BIFPSEUDO_03701	1.2e-29	135.6	Bifidobacteriales	pnuC			ko:K03811					ko00000,ko02000	4.B.1.1			Bacteria	2IBT8@201174,4D03Z@85004,COG3201@1,COG3201@2	NA|NA|NA	H	Nicotinamide mononucleotide transporter
DNDENEON_00110	547043.BIFPSEUDO_03701	2.7e-67	261.2	Bifidobacteriales	pnuC			ko:K03811					ko00000,ko02000	4.B.1.1			Bacteria	2IBT8@201174,4D03Z@85004,COG3201@1,COG3201@2	NA|NA|NA	H	Nicotinamide mononucleotide transporter
DNDENEON_00111	1437608.BBIA_1517	2.5e-49	201.4	Bifidobacteriales	nadD		2.7.1.22,2.7.7.1,2.7.7.18,3.6.1.55	ko:K00969,ko:K03574,ko:K06211	ko00760,ko01100,map00760,map01100	M00115	R00137,R02324,R03005	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000,ko03000,ko03400			iIT341.HP1337	Bacteria	2HZW3@201174,4D1ZG@85004,COG1057@1,COG1057@2,COG3172@1,COG3172@2	NA|NA|NA	H	ATPase kinase involved in NAD metabolism
DNDENEON_00112	547043.BIFPSEUDO_03704	2.2e-41	174.5	Bifidobacteriales	nadR												Bacteria	2HZW3@201174,4D1ZG@85004,COG3172@1,COG3172@2	NA|NA|NA	H	ATPase kinase involved in NAD metabolism
DNDENEON_00113	547043.BIFPSEUDO_03705	4.2e-203	713.8	Bifidobacteriales	tal	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016829,GO:0016830,GO:0016832,GO:0044424,GO:0044464,GO:0097023	2.2.1.2	ko:K00616,ko:K08313,ko:K08314	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01827	RC00439,RC00604	ko00000,ko00001,ko00002,ko01000			iB21_1397.B21_03781,iEC042_1314.EC042_0914,iECBD_1354.ECBD_4077,iECB_1328.ECB_03832,iECD_1391.ECD_03832,iECH74115_1262.ECH74115_5407,iECSP_1301.ECSP_5016,iECs_1301.ECs4875,iEcHS_1320.EcHS_A4181,iG2583_1286.G2583_4758,iSBO_1134.SBO_0715,iSF_1195.SF0775,iSFxv_1172.SFxv_0845,iS_1188.S0818,iZ_1308.Z5501	Bacteria	2GMF9@201174,4CZ3J@85004,COG0176@1,COG0176@2	NA|NA|NA	H	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DNDENEON_00114	547043.BIFPSEUDO_03706	0.0	1416.7	Bifidobacteriales	tkt	GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ1K@201174,4CZ64@85004,COG0021@1,COG0021@2	NA|NA|NA	H	Belongs to the transketolase family
DNDENEON_00115	547043.BIFPSEUDO_03707	4.7e-197	693.7	Bifidobacteriales	hrcA	GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141		ko:K03705					ko00000,ko03000				Bacteria	2GKF5@201174,4CZK3@85004,COG1420@1,COG1420@2	NA|NA|NA	K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
DNDENEON_00116	547043.BIFPSEUDO_03708	4.7e-189	667.2	Bifidobacteriales	dnaJ	GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0030312,GO:0040007,GO:0044464,GO:0071944		ko:K03686					ko00000,ko03029,ko03110				Bacteria	2GK69@201174,4D03K@85004,COG0484@1,COG0484@2	NA|NA|NA	O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
DNDENEON_00117	547043.BIFPSEUDO_03709	5.1e-158	563.5	Bifidobacteriales													Bacteria	2GW7W@201174,4CZ4W@85004,COG3001@1,COG3001@2	NA|NA|NA	G	Fructosamine kinase
DNDENEON_00118	547043.BIFPSEUDO_03710	6.9e-156	556.6	Bifidobacteriales	uppP		3.6.1.27	ko:K06153	ko00550,map00550		R05627	RC00002	ko00000,ko00001,ko01000,ko01011				Bacteria	2GJVG@201174,4CZ83@85004,COG1968@1,COG1968@2	NA|NA|NA	V	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
DNDENEON_00119	547043.BIFPSEUDO_03711	1.6e-156	558.5	Bifidobacteriales				ko:K07184					ko00000				Bacteria	2GK10@201174,4CYSJ@85004,COG1938@1,COG1938@2	NA|NA|NA	S	PAC2 family
DNDENEON_00127	547043.BIFPSEUDO_03719	5.4e-36	156.4	Bifidobacteriales													Bacteria	2B2IQ@1,2GUXU@201174,31V3U@2,4D1EY@85004	NA|NA|NA		
DNDENEON_00128	547043.BIFPSEUDO_03720	4.7e-76	290.4	Bifidobacteriales	garA												Bacteria	2GK99@201174,4D0R3@85004,COG1716@1,COG1716@2	NA|NA|NA	T	Inner membrane component of T3SS, cytoplasmic domain
DNDENEON_00129	547043.BIFPSEUDO_03721	9.7e-112	409.5	Bifidobacteriales													Bacteria	2GM67@201174,4CZ0X@85004,COG0789@1,COG0789@2	NA|NA|NA	K	helix_turn_helix, mercury resistance
DNDENEON_00130	547043.BIFPSEUDO_03722	4.6e-61	240.4	Bifidobacteriales													Bacteria	29TZI@1,2ISJH@201174,30F8H@2,4D0Z6@85004	NA|NA|NA		
DNDENEON_00131	547043.BIFPSEUDO_03723	4.4e-140	503.8	Bifidobacteriales	pgp	GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046777,GO:0071704,GO:0140096,GO:1901564	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130		R01334	RC00017	ko00000,ko00001,ko01000				Bacteria	2HFGX@201174,4CYSF@85004,COG0546@1,COG0546@2	NA|NA|NA	S	HAD-hyrolase-like
DNDENEON_00132	547043.BIFPSEUDO_03724	3.9e-62	243.8	Bifidobacteriales	rbpA	GO:0001000,GO:0001098,GO:0001108,GO:0003674,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0008270,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042221,GO:0043167,GO:0043169,GO:0043175,GO:0045893,GO:0045935,GO:0046677,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070063,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141											Bacteria	2CNY9@1,2IMK6@201174,32SI2@2,4D0V5@85004	NA|NA|NA	K	Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters
DNDENEON_00133	547043.BIFPSEUDO_03725	0.0	1713.4	Bifidobacteriales	helY	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019439,GO:0030312,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360,GO:1901361,GO:1901575		ko:K03727					ko00000,ko01000				Bacteria	2GJEX@201174,4CZEC@85004,COG4581@1,COG4581@2	NA|NA|NA	L	DEAD DEAH box helicase
DNDENEON_00134	547043.BIFPSEUDO_03726	2.1e-54	218.0	Bifidobacteriales													Bacteria	2B5BE@1,2IQT5@201174,31Y5K@2,4D17A@85004	NA|NA|NA		
DNDENEON_00135	547043.BIFPSEUDO_03727	0.0	1236.9	Bifidobacteriales	pafB			ko:K13573					ko00000,ko03051				Bacteria	2I8M5@201174,4CZWF@85004,COG2378@1,COG2378@2	NA|NA|NA	K	WYL domain
DNDENEON_00136	566552.BIFCAT_00732	1.4e-264	918.3	Bifidobacteriales	ugpA		2.7.7.9	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	M00129,M00361,M00362,M00549	R00289	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	2I2G3@201174,4CYTQ@85004,COG4284@1,COG4284@2	NA|NA|NA	G	UTP-glucose-1-phosphate uridylyltransferase
DNDENEON_00138	547043.BIFPSEUDO_03731	1.1e-69	269.2	Bifidobacteriales													Bacteria	2AXTZ@1,2IMJI@201174,31PV0@2,4D12E@85004	NA|NA|NA		
DNDENEON_00139	547043.BIFPSEUDO_03732	0.0	1378.2	Bifidobacteriales	der	GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0030312,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0040007,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	1.1.1.399,1.1.1.95,2.7.4.25	ko:K00058,ko:K00945,ko:K03977	ko00240,ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00240,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020,M00052	R00158,R00512,R01513,R01665	RC00002,RC00031	ko00000,ko00001,ko00002,ko01000,ko03009,ko04147				Bacteria	2GJ8J@201174,4CYSE@85004,COG0283@1,COG0283@2,COG1160@1,COG1160@2	NA|NA|NA	F	GTPase that plays an essential role in the late steps of ribosome biogenesis
DNDENEON_00140	547043.BIFPSEUDO_03733	9.1e-144	516.2	Bifidobacteriales	rluB	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.19,5.4.99.22	ko:K06178,ko:K06183					ko00000,ko01000,ko03009				Bacteria	2GJ4N@201174,4CZGG@85004,COG1187@1,COG1187@2	NA|NA|NA	J	Belongs to the pseudouridine synthase RsuA family
DNDENEON_00141	547043.BIFPSEUDO_03734	6.4e-160	570.1	Bifidobacteriales	glpF			ko:K02440,ko:K06188					ko00000,ko02000	1.A.8,1.A.8.1,1.A.8.2			Bacteria	2HZ9W@201174,4CZ5Q@85004,COG0580@1,COG0580@2	NA|NA|NA	U	Belongs to the MIP aquaporin (TC 1.A.8) family
DNDENEON_00142	78346.BRUM_1030	8.2e-34	149.4	Bifidobacteriales													Bacteria	2AXAE@1,2IQKC@201174,31P9H@2,4D18B@85004	NA|NA|NA		
DNDENEON_00143	547043.BIFPSEUDO_03735	0.0	1077.4	Bifidobacteriales	purH	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	2.1.2.3,3.5.4.10	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	M00048	R01127,R04560	RC00026,RC00263,RC00456	ko00000,ko00001,ko00002,ko01000,ko04147			iHN637.CLJU_RS04230,iJN678.purH	Bacteria	2GJWU@201174,4CZ3P@85004,COG0138@1,COG0138@2	NA|NA|NA	F	Bifunctional purine biosynthesis protein PurH
DNDENEON_00144	547043.BIFPSEUDO_03736	1.8e-246	858.2	Bifidobacteriales		GO:0008150,GO:0040007											Bacteria	2EKVE@1,2HZ8H@201174,33EIZ@2,4CYRN@85004	NA|NA|NA		
DNDENEON_00145	566552.BIFCAT_00724	7.5e-161	573.2	Bifidobacteriales	sucD	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944	6.2.1.5	ko:K01902	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000				Bacteria	2GK00@201174,4CYX1@85004,COG0074@1,COG0074@2	NA|NA|NA	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DNDENEON_00146	547043.BIFPSEUDO_03738	2.2e-221	774.6	Bifidobacteriales	sucC		6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKSB@201174,4CZCQ@85004,COG0045@1,COG0045@2	NA|NA|NA	F	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
DNDENEON_00147	547043.BIFPSEUDO_03739	1.8e-99	368.6	Bifidobacteriales	apt	GO:0003674,GO:0003824,GO:0003999,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006144,GO:0006168,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009113,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044464,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.4.2.22,2.4.2.7	ko:K00759,ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110		R00190,R01229,R02142,R04378	RC00063,RC00122	ko00000,ko00001,ko01000,ko04147				Bacteria	2IM7C@201174,4CZ9H@85004,COG0503@1,COG0503@2	NA|NA|NA	F	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DNDENEON_00148	547043.BIFPSEUDO_03740	1.8e-50	205.3	Bifidobacteriales	yajC	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031522,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0071944		ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2			Bacteria	2IKUJ@201174,4D139@85004,COG1862@1,COG1862@2	NA|NA|NA	U	Preprotein translocase subunit
DNDENEON_00149	547043.BIFPSEUDO_03741	5.6e-200	703.4	Bifidobacteriales	ruvB	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03551	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJZF@201174,4CZGU@85004,COG2255@1,COG2255@2	NA|NA|NA	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
DNDENEON_00150	547043.BIFPSEUDO_03742	1e-105	389.4	Bifidobacteriales	ruvA	GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009378,GO:0009379,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0031668,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051276,GO:0051289,GO:0051716,GO:0065003,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494	3.6.4.12	ko:K03550	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	2GN17@201174,4CZCE@85004,COG0632@1,COG0632@2	NA|NA|NA	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
DNDENEON_00151	547043.BIFPSEUDO_03743	1e-99	369.4	Bifidobacteriales	ruvC	GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576	3.1.22.4	ko:K01159	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJI5@201174,4CZ79@85004,COG0817@1,COG0817@2	NA|NA|NA	L	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DNDENEON_00152	547043.BIFPSEUDO_03744	5.2e-128	463.8	Bifidobacteriales	yebC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464											Bacteria	2GJ4G@201174,4CZ9X@85004,COG0217@1,COG0217@2	NA|NA|NA	K	transcriptional regulatory protein
DNDENEON_00153	547043.BIFPSEUDO_03745	3.5e-112	411.0	Bifidobacteriales	pgsA1	GO:0003674,GO:0003824,GO:0003881,GO:0003882,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576	2.7.8.11,2.7.8.5	ko:K00995,ko:K00999	ko00562,ko00564,ko01100,ko04070,map00562,map00564,map01100,map04070		R01801,R01802	RC00002,RC00017,RC00078,RC02795	ko00000,ko00001,ko01000				Bacteria	2GYKW@201174,4D0NB@85004,COG0558@1,COG0558@2	NA|NA|NA	I	CDP-alcohol phosphatidyltransferase
DNDENEON_00154	547043.BIFPSEUDO_03746	0.0	1372.5	Bifidobacteriales	thrS	GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GKTC@201174,4CZD3@85004,COG0441@1,COG0441@2	NA|NA|NA	J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DNDENEON_00155	547043.BIFPSEUDO_03747	1.6e-141	508.8	Bifidobacteriales		GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944											Bacteria	2GJ3C@201174,4CYYH@85004,COG3879@1,COG3879@2	NA|NA|NA	S	Bacterial protein of unknown function (DUF881)
DNDENEON_00156	547043.BIFPSEUDO_03748	4.2e-45	187.2	Bifidobacteriales	sbp												Bacteria	2IKJW@201174,4D12G@85004,COG3856@1,COG3856@2	NA|NA|NA	S	Protein of unknown function (DUF1290)
DNDENEON_00157	547043.BIFPSEUDO_03749	2.6e-172	611.3	Bifidobacteriales		GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944											Bacteria	2GMS5@201174,4CZ72@85004,COG3879@1,COG3879@2	NA|NA|NA	S	Bacterial protein of unknown function (DUF881)
DNDENEON_00158	547043.BIFPSEUDO_03750	1e-102	379.4	Bifidobacteriales	pgsA	GO:0003674,GO:0003824,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576	2.7.8.41,2.7.8.5	ko:K00995,ko:K08744	ko00564,ko01100,map00564,map01100		R01801,R02030	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000				Bacteria	2GM3F@201174,4CZGD@85004,COG0558@1,COG0558@2	NA|NA|NA	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DNDENEON_00159	547043.BIFPSEUDO_03751	1.1e-155	555.8	Bifidobacteriales	hisG	GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.4.2.17	ko:K00765	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01071	RC02819,RC03200	ko00000,ko00001,ko00002,ko01000				Bacteria	2GNAX@201174,4CZ66@85004,COG0040@1,COG0040@2	NA|NA|NA	F	ATP phosphoribosyltransferase
DNDENEON_00160	547043.BIFPSEUDO_03752	1.9e-40	171.4	Bifidobacteriales	hisE	GO:0000105,GO:0000287,GO:0003674,GO:0003824,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0052803,GO:0071704,GO:0071944,GO:0075136,GO:0075139,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	3.5.4.19,3.6.1.31,5.3.1.16	ko:K01523,ko:K01814,ko:K11755	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04035,R04037,R04640	RC00002,RC00945,RC01055	ko00000,ko00001,ko00002,ko01000			iECNA114_1301.ECNA114_0880,iECW_1372.ECW_m2186,iEKO11_1354.EKO11_1768,iSB619.SA_RS14110,iUMN146_1321.UM146_06665,iWFL_1372.ECW_m2186,iYO844.BSU34860	Bacteria	2IQ4D@201174,4D108@85004,COG0140@1,COG0140@2	NA|NA|NA	E	Phosphoribosyl-ATP pyrophosphohydrolase
DNDENEON_00161	566552.BIFCAT_00708	4.2e-97	360.9	Bifidobacteriales	rpe	GO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575	5.1.3.1	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01529	RC00540	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJZ9@201174,4CYX0@85004,COG0036@1,COG0036@2	NA|NA|NA	G	Ribulose-phosphate 3-epimerase
DNDENEON_00162	566552.BIFCAT_00707	4.6e-180	637.1	Bifidobacteriales	lgt	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008961,GO:0009058,GO:0009059,GO:0009249,GO:0009898,GO:0009987,GO:0010467,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0031224,GO:0031226,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0051604,GO:0071704,GO:0071944,GO:0098552,GO:0098562,GO:0140096,GO:1901564,GO:1901566,GO:1901576	2.1.1.199	ko:K03438,ko:K13292					ko00000,ko01000,ko03009				Bacteria	2GKSS@201174,4CYV8@85004,COG0682@1,COG0682@2	NA|NA|NA	M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DNDENEON_00163	547043.BIFPSEUDO_03756	9.3e-161	572.8	Bifidobacteriales	trpA	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	4.2.1.20	ko:K01695	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000				Bacteria	2GN6T@201174,4D0A3@85004,COG0159@1,COG0159@2	NA|NA|NA	E	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
DNDENEON_00164	547043.BIFPSEUDO_03757	0.0	1372.1	Bifidobacteriales	trpB	GO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.1.1.48,4.2.1.20	ko:K01609,ko:K01696	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722,R03508	RC00209,RC00210,RC00700,RC00701,RC00944,RC02868	ko00000,ko00001,ko00002,ko01000				Bacteria	2GM7Z@201174,4CZJW@85004,COG0133@1,COG0133@2,COG0134@1,COG0134@2	NA|NA|NA	E	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
DNDENEON_00165	547043.BIFPSEUDO_03758	2.1e-293	1014.2	Bifidobacteriales	trpE		4.1.3.27	ko:K01657	ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025	M00023	R00985,R00986	RC00010,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKJT@201174,4CZHW@85004,COG0147@1,COG0147@2	NA|NA|NA	E	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DNDENEON_00166	547043.BIFPSEUDO_03759	3.1e-71	274.2	Bifidobacteriales	hisI	GO:0008150,GO:0040007	3.5.4.19,3.6.1.31	ko:K01496,ko:K11755	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04035,R04037	RC00002,RC01055	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv1606	Bacteria	2IKKU@201174,4D0WW@85004,COG0139@1,COG0139@2	NA|NA|NA	E	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DNDENEON_00167	547043.BIFPSEUDO_03760	3e-139	501.1	Bifidobacteriales	hisF	GO:0000107,GO:0003674,GO:0003824,GO:0008150,GO:0016740,GO:0016757,GO:0016763,GO:0040007	4.1.3.27	ko:K01657,ko:K02500	ko00340,ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00340,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025	M00023,M00026	R00985,R00986,R04558	RC00010,RC01190,RC01943,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000				Bacteria	2GIRP@201174,4CZ8Z@85004,COG0107@1,COG0107@2	NA|NA|NA	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
DNDENEON_00168	547043.BIFPSEUDO_03761	3.2e-225	787.3	Bifidobacteriales	rlmN	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030312,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360	2.1.1.192	ko:K06941					ko00000,ko01000,ko03009				Bacteria	2GJ48@201174,4CZG2@85004,COG0820@1,COG0820@2	NA|NA|NA	J	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs
DNDENEON_00169	547043.BIFPSEUDO_03762	2.3e-176	624.8	Bifidobacteriales	cdsA	GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.7.41,2.7.7.67	ko:K00981,ko:K07098,ko:K19664	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	M00093	R01799,R08966	RC00002	ko00000,ko00001,ko00002,ko01000			iLJ478.TM1397	Bacteria	2I7ZA@201174,4CYZM@85004,COG0575@1,COG0575@2	NA|NA|NA	I	Cytidylyltransferase family
DNDENEON_00170	547043.BIFPSEUDO_03763	5.8e-92	343.6	Bifidobacteriales	frr	GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0030312,GO:0032984,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02838					ko00000,ko03012				Bacteria	2GJ9J@201174,4CYTF@85004,COG0233@1,COG0233@2	NA|NA|NA	J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
DNDENEON_00171	547043.BIFPSEUDO_03764	2.6e-135	488.0	Bifidobacteriales	pyrH	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006225,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009163,GO:0009165,GO:0009185,GO:0009188,GO:0009193,GO:0009194,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042455,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046048,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046872,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.7.4.22	ko:K09903	ko00240,ko01100,map00240,map01100		R00158	RC00002	ko00000,ko00001,ko01000			iSB619.SA_RS06240	Bacteria	2GKWQ@201174,4CZEK@85004,COG0528@1,COG0528@2	NA|NA|NA	F	Catalyzes the reversible phosphorylation of UMP to UDP
DNDENEON_00173	547043.BIFPSEUDO_03766	5e-143	513.8	Bifidobacteriales	tsf	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02357					ko00000,ko03012,ko03029				Bacteria	2GK4M@201174,4CYVQ@85004,COG0264@1,COG0264@2	NA|NA|NA	J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DNDENEON_00174	547043.BIFPSEUDO_03767	1.9e-139	501.9	Bifidobacteriales	rpsB	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02967	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GMYC@201174,4CZ96@85004,COG0052@1,COG0052@2	NA|NA|NA	J	Belongs to the universal ribosomal protein uS2 family
DNDENEON_00175	78346.BRUM_0998	1.1e-83	315.8	Bifidobacteriales	def		3.5.1.88	ko:K01462					ko00000,ko01000				Bacteria	2GJ87@201174,4CZ63@85004,COG0242@1,COG0242@2	NA|NA|NA	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
DNDENEON_00176	547043.BIFPSEUDO_03769	0.0	1301.6	Bifidobacteriales	fadD3		6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1			Bacteria	2GIXQ@201174,4CYVD@85004,COG1022@1,COG1022@2	NA|NA|NA	I	long-chain-fatty acid CoA ligase
DNDENEON_00177	547043.BIFPSEUDO_03770	1.8e-121	441.8	Bifidobacteriales													Bacteria	2BGJW@1,2IR97@201174,32AI7@2,4D19G@85004	NA|NA|NA		
DNDENEON_00178	356829.BITS_1144	1.5e-15	88.6	Bifidobacteriales				ko:K08369					ko00000,ko02000	2.A.1			Bacteria	2GJF6@201174,4CZW6@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00179	1437609.BCAL_0039	8.5e-79	299.7	Bifidobacteriales	ulaE	GO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019324,GO:0019752,GO:0019852,GO:0034015,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0051186,GO:0071704	5.1.3.22	ko:K03079	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	M00550	R03244	RC00540	ko00000,ko00001,ko00002,ko01000			iEC55989_1330.EC55989_4754,iECSE_1348.ECSE_4495,iEcHS_1320.EcHS_A4441,iEcSMS35_1347.EcSMS35_4668,iYL1228.KPN_04590	Bacteria	2GQYR@201174,4D0CH@85004,COG3623@1,COG3623@2	NA|NA|NA	G	Xylose isomerase-like TIM barrel
DNDENEON_00180	547043.BIFPSEUDO_04247	3.6e-77	294.3	Bifidobacteriales	araD		4.1.2.17,5.1.3.4	ko:K01628,ko:K03077	ko00040,ko00051,ko00053,ko01100,ko01120,map00040,map00051,map00053,map01100,map01120	M00550	R02262,R05850	RC00603,RC00604,RC01479	ko00000,ko00001,ko00002,ko01000				Bacteria	2GNI6@201174,4CZXX@85004,COG0235@1,COG0235@2	NA|NA|NA	G	Class II Aldolase and Adducin N-terminal domain
DNDENEON_00181	547043.BIFPSEUDO_04249	0.0	1192.6	Bifidobacteriales	fadD		6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1			Bacteria	2GIXQ@201174,4CZZP@85004,COG1022@1,COG1022@2	NA|NA|NA	I	AMP-binding enzyme
DNDENEON_00182	547043.BIFPSEUDO_04251	0.0	2301.9	Bifidobacteriales	cydD	GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0071702		ko:K06147,ko:K06148,ko:K16013	ko02010,map02010				ko00000,ko00001,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.129,3.A.1.21			Bacteria	2GITR@201174,4CYSB@85004,COG1132@1,COG1132@2,COG4988@1,COG4988@2	NA|NA|NA	V	ABC transporter transmembrane region
DNDENEON_00183	547043.BIFPSEUDO_04254	2e-155	555.1	Bifidobacteriales	pdxS	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016020,GO:0016829,GO:0016840,GO:0016843,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0040007,GO:0042364,GO:0042802,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617	4.3.3.6	ko:K06215	ko00750,map00750		R07456	RC00010,RC01783,RC03043	ko00000,ko00001,ko01000				Bacteria	2GK1T@201174,4CZ5P@85004,COG0214@1,COG0214@2	NA|NA|NA	H	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
DNDENEON_00184	547043.BIFPSEUDO_04255	1e-128	466.1	Bifidobacteriales	pdxT	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0008614,GO:0009058,GO:0009108,GO:0009110,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016829,GO:0016840,GO:0016843,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0040007,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046184,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0071496,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1903600	4.3.3.6	ko:K08681	ko00750,map00750		R07456	RC00010,RC01783,RC03043	ko00000,ko00001,ko01000			iHN637.CLJU_RS19495	Bacteria	2GNYG@201174,4CYUS@85004,COG0311@1,COG0311@2	NA|NA|NA	H	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
DNDENEON_00185	547043.BIFPSEUDO_04256	9.1e-240	835.9	Bifidobacteriales				ko:K02027		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GJIP@201174,4CZU2@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_00186	547043.BIFPSEUDO_02422	6.2e-155	553.5	Bifidobacteriales				ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GMTW@201174,4CZX2@85004,COG1175@1,COG1175@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00187	547043.BIFPSEUDO_02421	4.5e-167	594.0	Bifidobacteriales				ko:K02026		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GJPZ@201174,4CYV5@85004,COG0395@1,COG0395@2	NA|NA|NA	G	ABC transporter permease
DNDENEON_00188	547043.BIFPSEUDO_03235	0.0	1460.3	Bifidobacteriales	bga1		3.2.1.23	ko:K12308	ko00052,map00052		R01105	RC00452	ko00000,ko00001,ko01000				Bacteria	2GMDT@201174,4CZ38@85004,COG1874@1,COG1874@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_00189	547043.BIFPSEUDO_03236	8.9e-198	696.0	Bifidobacteriales													Bacteria	2GJ5Q@201174,4D040@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00190	547043.BIFPSEUDO_03238	2.1e-241	841.3	Bifidobacteriales	mntH	GO:0000041,GO:0003674,GO:0005215,GO:0005384,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006826,GO:0006828,GO:0006829,GO:0008150,GO:0008324,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0015075,GO:0015077,GO:0015078,GO:0015086,GO:0015291,GO:0015292,GO:0015293,GO:0015318,GO:0015672,GO:0015684,GO:0015691,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0034755,GO:0042221,GO:0044425,GO:0044464,GO:0046873,GO:0046915,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070574,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071421,GO:0071577,GO:0071578,GO:0071944,GO:0072511,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098739,GO:0099587,GO:1902600		ko:K03322					ko00000,ko02000	2.A.55.2.6,2.A.55.3		iSF_1195.SF2457,iYO844.BSU04360	Bacteria	2GJSM@201174,4CZZB@85004,COG1914@1,COG1914@2	NA|NA|NA	P	H( )-stimulated, divalent metal cation uptake system
DNDENEON_00191	547043.BIFPSEUDO_03240	9.3e-166	589.3	Bifidobacteriales	dkgA	GO:0003674,GO:0003824,GO:0004033,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0008106,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0042180,GO:0042182,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0055114,GO:0071704,GO:1901575	1.1.1.346	ko:K06221			R08878	RC00089	ko00000,ko01000			iECH74115_1262.ECH74115_4323,iECSP_1301.ECSP_3988	Bacteria	2GJQ7@201174,4CYUN@85004,COG0656@1,COG0656@2	NA|NA|NA	S	Oxidoreductase, aldo keto reductase family protein
DNDENEON_00192	547043.BIFPSEUDO_03241	2.3e-115	421.8	Bifidobacteriales													Bacteria	2GJ38@201174,4CZCY@85004,COG2356@1,COG2356@2	NA|NA|NA	L	Protein of unknown function (DUF1524)
DNDENEON_00193	547043.BIFPSEUDO_03242	1.3e-243	848.6	Bifidobacteriales													Bacteria	2HZW6@201174,4D20A@85004,COG5001@1,COG5001@2	NA|NA|NA	T	Diguanylate cyclase (GGDEF) domain protein
DNDENEON_00194	547043.BIFPSEUDO_03243	2.3e-284	984.2	Bifidobacteriales													Bacteria	2GIZX@201174,4CZWX@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00195	547043.BIFPSEUDO_03244	2.5e-47	194.5	Bifidobacteriales													Bacteria	2AVIH@1,2IMY2@201174,31MB1@2,4D12K@85004	NA|NA|NA		
DNDENEON_00196	547043.BIFPSEUDO_03245	9.3e-189	666.0	Bifidobacteriales													Bacteria	2GKXC@201174,4CZVK@85004,COG3021@1,COG3021@2	NA|NA|NA	S	Endonuclease/Exonuclease/phosphatase family
DNDENEON_00197	547043.BIFPSEUDO_03246	0.0	1152.1	Bifidobacteriales			2.1.1.107,2.1.1.294,2.7.1.181,2.7.11.1	ko:K02496,ko:K05802,ko:K08884,ko:K18827	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03194,R10657,R10658	RC00002,RC00003,RC00078,RC00871,RC03220	ko00000,ko00001,ko00002,ko01000,ko01001,ko01005,ko02000	1.A.23.1.1			Bacteria	2I2HI@201174,4CYVN@85004,COG2959@1,COG2959@2	NA|NA|NA	H	Protein of unknown function (DUF4012)
DNDENEON_00198	547043.BIFPSEUDO_03247	0.0	1089.3	Bifidobacteriales	rfbP												Bacteria	2GK0M@201174,4CZ4J@85004,COG2148@1,COG2148@2	NA|NA|NA	M	Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
DNDENEON_00199	547043.BIFPSEUDO_03248	2.2e-177	628.6	Bifidobacteriales													Bacteria	2AZ7Y@1,2GPBK@201174,31REU@2,4D1AQ@85004	NA|NA|NA		
DNDENEON_00200	78344.BIGA_0787	1.5e-31	142.1	Bifidobacteriales													Bacteria	2GNU1@201174,4D1H2@85004,COG1404@1,COG1404@2	NA|NA|NA	O	Subtilase family
DNDENEON_00201	547043.BIFPSEUDO_03251	1.4e-17	94.7	Bifidobacteriales													Bacteria	2GITX@201174,4D0JX@85004,COG3274@1,COG3274@2	NA|NA|NA	S	enterobacterial common antigen metabolic process
DNDENEON_00202	547043.BIFPSEUDO_03251	4.6e-114	417.5	Bifidobacteriales													Bacteria	2GITX@201174,4D0JX@85004,COG3274@1,COG3274@2	NA|NA|NA	S	enterobacterial common antigen metabolic process
DNDENEON_00203	279010.BL01187	3.1e-28	132.9	Bacillus	pslL			ko:K21005	ko02025,map02025				ko00000,ko00001				Bacteria	1VECK@1239,1ZCGU@1386,4HNBZ@91061,COG3594@1,COG3594@2	NA|NA|NA	G	Acyltransferase family
DNDENEON_00204	327277.JHAL01000001_gene1652	1.8e-85	323.2	Bacteria													Bacteria	2F2KD@1,33VH7@2	NA|NA|NA		
DNDENEON_00205	1415775.U729_522	8.1e-69	267.7	Clostridiaceae													Bacteria	1TRCM@1239,24B86@186801,36IK4@31979,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyltransferase, group 1 family protein
DNDENEON_00206	326426.Bbr_0446	4.3e-79	301.2	Bifidobacteriales													Bacteria	2IKA9@201174,4D1Y9@85004,COG0110@1,COG0110@2	NA|NA|NA	H	Hexapeptide repeat of succinyl-transferase
DNDENEON_00207	326426.Bbr_0445	3.5e-90	338.6	Bifidobacteriales			2.4.1.166	ko:K00745					ko00000,ko01000		GT2		Bacteria	2I2GT@201174,4D2Y3@85004,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyltransferase like family 2
DNDENEON_00208	547043.BIFPSEUDO_03260	7.5e-175	619.8	Bifidobacteriales	cps2J												Bacteria	2I9QU@201174,4D0AU@85004,COG2244@1,COG2244@2	NA|NA|NA	S	Polysaccharide biosynthesis protein
DNDENEON_00209	547043.BIFPSEUDO_04310	1.4e-135	488.8	Bifidobacteriales	lacL		3.2.1.23	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100		R01105,R01678,R03355,R04783,R06114	RC00049,RC00452	ko00000,ko00001,ko01000				Bacteria	2GMAT@201174,4CYYS@85004,COG3250@1,COG3250@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_00210	547043.BIFPSEUDO_04309	1.1e-262	912.1	Bifidobacteriales	lacS			ko:K03292,ko:K11104,ko:K16209					ko00000,ko02000	2.A.2,2.A.2.1,2.A.2.2			Bacteria	2HD4Y@201174,4CZRA@85004,COG2211@1,COG2211@2	NA|NA|NA	G	Psort location CytoplasmicMembrane, score 10.00
DNDENEON_00211	547043.BIFPSEUDO_04308	3.6e-210	737.3	Bifidobacteriales													Bacteria	2GKMZ@201174,4CZUF@85004,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
DNDENEON_00212	547043.BIFPSEUDO_04306	4.2e-242	843.6	Bifidobacteriales				ko:K02027		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GJIP@201174,4CZ88@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_00213	547043.BIFPSEUDO_04305	2.9e-146	524.6	Bifidobacteriales				ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GMTW@201174,4CZX2@85004,COG1175@1,COG1175@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00214	547043.BIFPSEUDO_04304	4.4e-164	583.9	Bifidobacteriales				ko:K02026		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GJPZ@201174,4CYV5@85004,COG0395@1,COG0395@2	NA|NA|NA	G	ABC transporter permease
DNDENEON_00215	547043.BIFPSEUDO_04303	6.6e-173	613.2	Bifidobacteriales			2.7.1.2	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R01600,R01786	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2GZ27@201174,4CZII@85004,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
DNDENEON_00216	547043.BIFPSEUDO_04302	0.0	1319.3	Bifidobacteriales													Bacteria	2HZCI@201174,4CZS1@85004,COG3525@1,COG3525@2	NA|NA|NA	G	Glycosyl hydrolase family 20, domain 2
DNDENEON_00217	547043.BIFPSEUDO_04300	1.2e-149	535.8	Bifidobacteriales	nagB		3.1.1.31,3.5.99.6	ko:K01057,ko:K02564	ko00030,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00520,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R00765,R02035	RC00163,RC00537	ko00000,ko00001,ko00002,ko01000				Bacteria	2GK7F@201174,4CYYE@85004,COG0363@1,COG0363@2	NA|NA|NA	G	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
DNDENEON_00218	547043.BIFPSEUDO_04298	4.6e-228	797.0	Bifidobacteriales	nagA		3.5.1.25	ko:K01443	ko00520,ko01130,map00520,map01130		R02059	RC00166,RC00300	ko00000,ko00001,ko01000				Bacteria	2GK1E@201174,4CZKB@85004,COG1820@1,COG1820@2	NA|NA|NA	G	Amidohydrolase family
DNDENEON_00219	547043.BIFPSEUDO_04297	1.9e-186	658.3	Bifidobacteriales	lacR			ko:K02529					ko00000,ko03000				Bacteria	2H5ZG@201174,4CZ8A@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Transcriptional regulator, LacI family
DNDENEON_00220	547043.BIFPSEUDO_04296	0.0	1546.6	Bifidobacteriales													Bacteria	2GIZF@201174,4D0M7@85004,COG5001@1,COG5001@2	NA|NA|NA	T	Diguanylate cyclase, GGDEF domain
DNDENEON_00221	547043.BIFPSEUDO_04295	1.7e-251	874.8	Bifidobacteriales			3.2.1.14	ko:K01183	ko00520,ko01100,map00520,map01100		R01206,R02334	RC00467	ko00000,ko00001,ko01000		GH18		Bacteria	2I2XD@201174,4CZW2@85004,COG3979@1,COG3979@2	NA|NA|NA	S	Carbohydrate binding domain
DNDENEON_00222	547043.BIFPSEUDO_04294	0.0	1500.3	Bifidobacteriales													Bacteria	2GN8M@201174,4D042@85004,COG1215@1,COG1215@2	NA|NA|NA	M	probably involved in cell wall
DNDENEON_00223	566552.BIFCAT_00237	8.5e-234	815.8	Bifidobacteriales													Bacteria	2GJFD@201174,4CZ06@85004,COG1215@1,COG1215@2,COG4030@1,COG4030@2	NA|NA|NA	M	Protein of unknown function (DUF2961)
DNDENEON_00224	547043.BIFPSEUDO_04286	3.8e-156	557.4	Bifidobacteriales													Bacteria	2HZCA@201174,4CZQE@85004,COG0657@1,COG0657@2	NA|NA|NA	I	alpha/beta hydrolase fold
DNDENEON_00225	547043.BIFPSEUDO_04287	5e-27	126.3	Bifidobacteriales													Bacteria	2AISH@1,2HAX1@201174,3199B@2,4D2JR@85004	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00226	547043.BIFPSEUDO_04284	3.1e-214	750.7	Bifidobacteriales	lipA												Bacteria	2HGIX@201174,4CZUK@85004,COG0657@1,COG0657@2	NA|NA|NA	I	Hydrolase, alpha beta domain protein
DNDENEON_00227	547043.BIFPSEUDO_04282	0.0	1174.5	Bifidobacteriales	mdlA2			ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	2GITR@201174,4D028@85004,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
DNDENEON_00228	547043.BIFPSEUDO_04281	0.0	1111.3	Bifidobacteriales	yknV			ko:K02021,ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21			Bacteria	2GITR@201174,4CZ32@85004,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter
DNDENEON_00229	547043.BIFPSEUDO_04280	8e-126	456.4	Bifidobacteriales													Bacteria	2AU3T@1,2IJQ7@201174,31JQA@2,4D0VX@85004	NA|NA|NA		
DNDENEON_00230	547043.BIFPSEUDO_04279	0.0	1658.7	Bifidobacteriales	rafA		3.2.1.22	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603		R01101,R01103,R01104,R01194,R01329,R02926,R03634,R04019,R04470,R05549,R05961,R06091	RC00049,RC00059,RC00451	ko00000,ko00001,ko01000				Bacteria	2GJJ1@201174,4CZDM@85004,COG3345@1,COG3345@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_00231	547043.BIFPSEUDO_04278	1.4e-223	781.9	Bifidobacteriales													Bacteria	2GJ5Q@201174,4D041@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00232	78344.BIGA_1176	2.3e-233	814.7	Bifidobacteriales													Bacteria	2I4RN@201174,4D07N@85004,COG1501@1,COG1501@2	NA|NA|NA	G	Alpha galactosidase A
DNDENEON_00233	547043.BIFPSEUDO_04275	0.0	1623.2	Bifidobacteriales													Bacteria	2HZF4@201174,4D06Z@85004,COG3534@1,COG3534@2	NA|NA|NA	G	Alpha-L-arabinofuranosidase C-terminus
DNDENEON_00234	547043.BIFPSEUDO_04274	2.2e-184	651.4	Bifidobacteriales	tatD			ko:K03424					ko00000,ko01000				Bacteria	2GMJJ@201174,4CYZI@85004,COG0084@1,COG0084@2	NA|NA|NA	L	TatD related DNase
DNDENEON_00235	547043.BIFPSEUDO_04273	0.0	1428.3	Bifidobacteriales	kup	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662		ko:K03549					ko00000,ko02000	2.A.72			Bacteria	2GMPQ@201174,4CZM3@85004,COG3158@1,COG3158@2	NA|NA|NA	P	Transport of potassium into the cell
DNDENEON_00236	547043.BIFPSEUDO_04271	1e-167	595.9	Bifidobacteriales													Bacteria	2IBFV@201174,4CYX2@85004,COG0121@1,COG0121@2	NA|NA|NA	S	Glutamine amidotransferase domain
DNDENEON_00237	547043.BIFPSEUDO_04270	3.3e-149	534.3	Bifidobacteriales				ko:K02030,ko:K06950		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GNQR@201174,4CYT9@85004,COG2206@1,COG2206@2	NA|NA|NA	T	HD domain
DNDENEON_00238	547043.BIFPSEUDO_04269	1.6e-155	555.8	Bifidobacteriales				ko:K02003,ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GNFW@201174,4CZAW@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter
DNDENEON_00239	547043.BIFPSEUDO_04268	1.8e-240	838.2	Bifidobacteriales				ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GMGJ@201174,4CZBN@85004,COG0577@1,COG0577@2	NA|NA|NA	V	ABC transporter permease
DNDENEON_00240	547043.BIFPSEUDO_04267	0.0	1222.2	Bifidobacteriales													Bacteria	2HKW0@201174,4D00J@85004,COG5617@1,COG5617@2	NA|NA|NA	S	Psort location CytoplasmicMembrane, score 9.99
DNDENEON_00241	553184.ATORI0001_1162	3.1e-11	75.1	Bacteria													Bacteria	COG2944@1,COG2944@2	NA|NA|NA	K	sequence-specific DNA binding
DNDENEON_00246	1394176.AWUO01000014_gene645	8.2e-61	240.7	Actinobacteria				ko:K04763					ko00000,ko03036				Bacteria	2ID5W@201174,COG4974@1,COG4974@2	NA|NA|NA	L	Belongs to the 'phage' integrase family
DNDENEON_00247	1394176.AWUO01000014_gene644	3.6e-64	251.9	Bifidobacteriales													Bacteria	2BWS4@1,2GR3P@201174,32XQ0@2,4D1S1@85004	NA|NA|NA		
DNDENEON_00248	1304866.K413DRAFT_4686	6.8e-10	69.3	Bacteria													Bacteria	29154@1,2ZNSE@2	NA|NA|NA		
DNDENEON_00250	1435051.BMOU_0754	3.4e-14	85.1	Bifidobacteriales													Bacteria	2DR0D@1,2GXFZ@201174,339ND@2,4D1Q4@85004	NA|NA|NA		
DNDENEON_00252	903814.ELI_0201	6.8e-26	123.6	Eubacteriaceae													Bacteria	1VCY1@1239,24FA0@186801,25ZFZ@186806,COG4734@1,COG4734@2	NA|NA|NA	S	Domain of unknown function (DUF3846)
DNDENEON_00253	547043.BIFPSEUDO_04372	8.7e-290	1002.3	Bifidobacteriales	groL	GO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006458,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016020,GO:0016465,GO:0022610,GO:0030112,GO:0030312,GO:0030313,GO:0031975,GO:0032991,GO:0036293,GO:0040007,GO:0042026,GO:0042603,GO:0043388,GO:0044093,GO:0044183,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0050896,GO:0051082,GO:0051098,GO:0051099,GO:0051101,GO:0051704,GO:0061077,GO:0065007,GO:0065009,GO:0070482,GO:0071944,GO:0101031,GO:1990220,GO:2000677,GO:2000679		ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152				ko00000,ko00001,ko03019,ko03029,ko03110,ko04147				Bacteria	2GKC9@201174,4CZJK@85004,COG0459@1,COG0459@2	NA|NA|NA	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
DNDENEON_00255	547043.BIFPSEUDO_04374	6.6e-124	450.3	Bifidobacteriales													Bacteria	2B59T@1,2HZNR@201174,31Y3Y@2,4D12Q@85004	NA|NA|NA		
DNDENEON_00256	566552.BIFCAT_01871	2.6e-132	478.0	Bifidobacteriales													Bacteria	2GIZB@201174,4CYPS@85004,COG0745@1,COG0745@2	NA|NA|NA	KT	Response regulator receiver domain protein
DNDENEON_00257	547043.BIFPSEUDO_04377	0.0	1167.5	Bifidobacteriales			2.7.13.3	ko:K02484,ko:K07653,ko:K07768	ko02020,map02020	M00443,M00460			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	2I2DU@201174,4CZNF@85004,COG3850@1,COG3850@2,COG5002@1,COG5002@2	NA|NA|NA	T	ATPase histidine kinase DNA gyrase B HSP90 domain protein
DNDENEON_00258	547043.BIFPSEUDO_04378	4.5e-67	260.4	Bifidobacteriales	cspB			ko:K03704					ko00000,ko03000				Bacteria	2IKXN@201174,4D0V4@85004,COG1278@1,COG1278@2	NA|NA|NA	K	'Cold-shock' DNA-binding domain
DNDENEON_00259	547043.BIFPSEUDO_04379	1.2e-182	646.0	Bifidobacteriales													Bacteria	28NWB@1,2GJ74@201174,2ZBU7@2,4CYW9@85004	NA|NA|NA	S	Protein of unknown function (DUF3027)
DNDENEON_00260	547043.BIFPSEUDO_04380	4.6e-188	663.7	Bifidobacteriales	uspA												Bacteria	2IA7S@201174,4CZZ0@85004,COG0589@1,COG0589@2	NA|NA|NA	T	Belongs to the universal stress protein A family
DNDENEON_00261	547043.BIFPSEUDO_04381	0.0	1591.6	Bifidobacteriales	clpC			ko:K03696	ko01100,map01100				ko00000,ko03110				Bacteria	2GJ77@201174,4CZCH@85004,COG0542@1,COG0542@2	NA|NA|NA	O	ATPase family associated with various cellular activities (AAA)
DNDENEON_00262	547043.BIFPSEUDO_04382	1.3e-254	885.2	Bifidobacteriales	codA		3.5.4.1,3.5.4.21	ko:K01485,ko:K03365	ko00240,ko00330,ko01100,map00240,map00330,map01100		R00974,R01411,R02922	RC00074,RC00514,RC00809	ko00000,ko00001,ko01000				Bacteria	2GKKM@201174,4D07T@85004,COG0402@1,COG0402@2	NA|NA|NA	F	Amidohydrolase family
DNDENEON_00263	547043.BIFPSEUDO_04383	1.6e-285	988.0	Bifidobacteriales	purR			ko:K09684					ko00000,ko03000				Bacteria	2HPPC@201174,4D0FM@85004,COG2508@1,COG2508@2	NA|NA|NA	QT	Purine catabolism regulatory protein-like family
DNDENEON_00264	547043.BIFPSEUDO_04384	4.2e-245	853.6	Bifidobacteriales	proP			ko:K03762					ko00000,ko02000	2.A.1.6.4			Bacteria	2GIYR@201174,4CYY8@85004,COG0477@1,COG0477@2	NA|NA|NA	EGP	Sugar (and other) transporter
DNDENEON_00265	547043.BIFPSEUDO_04385	4.6e-140	503.8	Bifidobacteriales			3.5.2.10	ko:K01470	ko00330,map00330		R01884	RC00615	ko00000,ko00001,ko01000				Bacteria	2HCRK@201174,4CZW9@85004,COG1402@1,COG1402@2	NA|NA|NA	S	Creatinine amidohydrolase
DNDENEON_00266	547043.BIFPSEUDO_04386	2.6e-216	758.1	Bifidobacteriales			3.1.26.12,3.2.1.8	ko:K01181,ko:K08300,ko:K08301	ko03018,map03018	M00394			ko00000,ko00001,ko00002,ko01000,ko03009,ko03019				Bacteria	2I2EC@201174,4CYYM@85004,COG3266@1,COG3266@2	NA|NA|NA	S	Domain of Unknown Function (DUF349)
DNDENEON_00267	1680.BADO_0588	5.3e-251	873.2	Bifidobacteriales	hisS		6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GIYJ@201174,4CYR9@85004,COG0124@1,COG0124@2	NA|NA|NA	J	Histidyl-tRNA synthetase
DNDENEON_00268	547043.BIFPSEUDO_04389	0.0	1197.2	Bifidobacteriales	aspS	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	6.1.1.12	ko:K01876	ko00970,map00970	M00359,M00360	R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029				Bacteria	2GJHU@201174,4CYWQ@85004,COG0173@1,COG0173@2	NA|NA|NA	J	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DNDENEON_00269	566552.BIFCAT_01881	1.3e-274	951.8	Bifidobacteriales	glnP			ko:K02029,ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GJJ9@201174,4CZIX@85004,COG0765@1,COG0765@2,COG0834@1,COG0834@2	NA|NA|NA	E	Binding-protein-dependent transport system inner membrane component
DNDENEON_00270	566552.BIFCAT_01882	6.2e-137	493.4	Bifidobacteriales	glnQ		3.6.3.21	ko:K02028,ko:K10038	ko02010,map02010	M00227,M00236			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.2			Bacteria	2GIZW@201174,4CZ3R@85004,COG1126@1,COG1126@2	NA|NA|NA	E	ATPases associated with a variety of cellular activities
DNDENEON_00271	547043.BIFPSEUDO_04393	6.2e-137	493.4	Bifidobacteriales	gluA		3.6.3.21	ko:K02028,ko:K10008	ko02010,map02010	M00233,M00236			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.9			Bacteria	2GIZW@201174,4CYXE@85004,COG1126@1,COG1126@2	NA|NA|NA	E	ATP-binding protein of ABC transporter for glutamate K02028
DNDENEON_00272	566552.BIFCAT_01886	4e-153	547.4	Bifidobacteriales	gluB			ko:K10005	ko02010,map02010	M00233			ko00000,ko00001,ko00002,ko02000	3.A.1.3.9			Bacteria	2GJH8@201174,4CZA4@85004,COG0834@1,COG0834@2	NA|NA|NA	ET	Belongs to the bacterial solute-binding protein 3 family
DNDENEON_00273	566552.BIFCAT_01887	6.8e-111	406.8	Bifidobacteriales	gluC	GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1903825,GO:1905039		ko:K10006,ko:K10040	ko02010,map02010	M00228,M00233			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.9			Bacteria	2GNUR@201174,4CZ5M@85004,COG0765@1,COG0765@2	NA|NA|NA	E	Binding-protein-dependent transport system inner membrane component
DNDENEON_00274	566552.BIFCAT_01888	1.5e-195	688.7	Bifidobacteriales	gluD			ko:K02029,ko:K10007	ko02010,map02010	M00233,M00236			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.9			Bacteria	2GNBH@201174,4CZB4@85004,COG0765@1,COG0765@2	NA|NA|NA	E	Binding-protein-dependent transport system inner membrane component
DNDENEON_00275	566552.BIFCAT_01889	4.2e-186	657.1	Bifidobacteriales			2.7.4.1	ko:K00937	ko00190,ko03018,map00190,map03018				ko00000,ko00001,ko01000,ko03019				Bacteria	2GKRN@201174,4CZZU@85004,COG2326@1,COG2326@2	NA|NA|NA	S	Polyphosphate kinase 2 (PPK2)
DNDENEON_00276	547043.BIFPSEUDO_04398	0.0	1706.0	Bifidobacteriales				ko:K03727					ko00000,ko01000				Bacteria	2GJSV@201174,4CZVX@85004,COG4581@1,COG4581@2	NA|NA|NA	L	DEAD DEAH box helicase
DNDENEON_00277	547043.BIFPSEUDO_04399	1.4e-248	865.1	Bifidobacteriales	rarA			ko:K07478					ko00000				Bacteria	2GKDP@201174,4CZ2K@85004,COG2256@1,COG2256@2	NA|NA|NA	L	Recombination factor protein RarA
DNDENEON_00278	547043.BIFPSEUDO_04400	4.8e-134	483.8	Bifidobacteriales													Bacteria	2GJE6@201174,4D2SY@85004,COG0745@1,COG0745@2	NA|NA|NA	KT	Transcriptional regulatory protein, C terminal
DNDENEON_00279	547043.BIFPSEUDO_04401	7.1e-287	992.6	Bifidobacteriales	mtrB	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464	2.7.13.3	ko:K02484,ko:K07653,ko:K07654	ko02020,map02020	M00460,M00461			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	2GJ2D@201174,4D03C@85004,COG5002@1,COG5002@2	NA|NA|NA	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
DNDENEON_00280	547043.BIFPSEUDO_04402	0.0	1129.4	Bifidobacteriales	lpqB												Bacteria	2GJ5Y@201174,4D0HJ@85004,COG5401@1,COG5401@2	NA|NA|NA	S	Lipoprotein LpqB beta-propeller domain
DNDENEON_00281	547043.BIFPSEUDO_04403	2.4e-165	588.2	Bifidobacteriales				ko:K02058		M00221			ko00000,ko00002,ko02000	3.A.1.2			Bacteria	2GJ0Z@201174,4D2SP@85004,COG1879@1,COG1879@2	NA|NA|NA	G	Periplasmic binding protein domain
DNDENEON_00282	547043.BIFPSEUDO_04404	6e-288	996.1	Bifidobacteriales	ytfR		3.6.3.17	ko:K02056		M00221			ko00000,ko00002,ko01000,ko02000	3.A.1.2		iECED1_1282.ECED1_5085	Bacteria	2GJ3F@201174,4CZ8Y@85004,COG1129@1,COG1129@2	NA|NA|NA	G	ATPases associated with a variety of cellular activities
DNDENEON_00283	547043.BIFPSEUDO_04405	1.5e-181	642.1	Bifidobacteriales	ytfT	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0008643,GO:0015144,GO:0015145,GO:0015146,GO:0015591,GO:0015749,GO:0015750,GO:0015752,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0032991,GO:0034219,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351		ko:K02057		M00221			ko00000,ko00002,ko02000	3.A.1.2		iAPECO1_1312.APECO1_2162,iECH74115_1262.ECH74115_5749,iECOK1_1307.ECOK1_4745,iECSF_1327.ECSF_4119,iLF82_1304.LF82_3716,iUTI89_1310.UTI89_C4834,ic_1306.c5327	Bacteria	2HB45@201174,4D0BE@85004,COG1172@1,COG1172@2	NA|NA|NA	U	Branched-chain amino acid transport system / permease component
DNDENEON_00284	547043.BIFPSEUDO_04406	1.2e-172	612.5	Bifidobacteriales	yjfF	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944		ko:K02057		M00221			ko00000,ko00002,ko02000	3.A.1.2		iECW_1372.ECW_m4592,iEKO11_1354.EKO11_4080,iWFL_1372.ECW_m4592	Bacteria	2GJDW@201174,4CZMU@85004,COG1172@1,COG1172@2	NA|NA|NA	U	Branched-chain amino acid transport system / permease component
DNDENEON_00285	547043.BIFPSEUDO_04407	2.6e-251	874.4	Bifidobacteriales				ko:K18926		M00715			ko00000,ko00002,ko02000	2.A.1.3.30			Bacteria	2GIZX@201174,4CZ0R@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00286	547043.BIFPSEUDO_04408	0.0	1079.7	Bifidobacteriales				ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GIUH@201174,4CZFK@85004,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substrate-binding protein, family 5
DNDENEON_00287	1435051.BMOU_2043	1e-113	416.0	Bifidobacteriales	clpP		3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212				ko00000,ko00001,ko01000,ko01002				Bacteria	2GK5C@201174,4CYUU@85004,COG0740@1,COG0740@2	NA|NA|NA	O	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
DNDENEON_00288	547043.BIFPSEUDO_04410	8.6e-125	453.0	Bifidobacteriales	clpP	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212				ko00000,ko00001,ko01000,ko01002				Bacteria	2GKNK@201174,4CZVF@85004,COG0740@1,COG0740@2	NA|NA|NA	O	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
DNDENEON_00289	547043.BIFPSEUDO_04411	6.1e-241	839.7	Bifidobacteriales	clpX	GO:0000166,GO:0000502,GO:0002020,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009376,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019899,GO:0019904,GO:0030163,GO:0030164,GO:0030312,GO:0030554,GO:0031333,GO:0031597,GO:0032271,GO:0032272,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043254,GO:0043335,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051301,GO:0051704,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0097718,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904949,GO:1905368,GO:1905369		ko:K03544	ko04112,map04112				ko00000,ko00001,ko03110				Bacteria	2GJXQ@201174,4CYT6@85004,COG1219@1,COG1219@2	NA|NA|NA	O	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DNDENEON_00291	1680.BADO_0384	7.1e-71	273.1	Bifidobacteriales	gpmA	GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016020,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031323,GO:0031329,GO:0032787,GO:0032991,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0060255,GO:0062012,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031	5.4.2.11	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147				Bacteria	2GK8F@201174,4CZMF@85004,COG0588@1,COG0588@2	NA|NA|NA	G	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DNDENEON_00292	547043.BIFPSEUDO_02547	0.0	1294.3	Bifidobacteriales			4.2.1.53	ko:K10254					ko00000,ko01000				Bacteria	2GKZ8@201174,4CYZK@85004,COG4716@1,COG4716@2	NA|NA|NA	S	MCRA family
DNDENEON_00293	547043.BIFPSEUDO_02546	3.3e-89	334.7	Bifidobacteriales	phoU			ko:K02039					ko00000				Bacteria	2GKAD@201174,4CZ9B@85004,COG0704@1,COG0704@2	NA|NA|NA	P	Plays a role in the regulation of phosphate uptake
DNDENEON_00294	547043.BIFPSEUDO_02545	1.4e-215	755.4	Bifidobacteriales													Bacteria	2GJY7@201174,4CZIM@85004,COG5002@1,COG5002@2	NA|NA|NA	T	ATPase histidine kinase DNA gyrase B HSP90 domain protein
DNDENEON_00295	1688.BCUN_0551	1.5e-102	382.1	Actinobacteria													Bacteria	2GWJF@201174,COG4886@1,COG4886@2	NA|NA|NA	S	Listeria-Bacteroides repeat domain (List_Bact_rpt)
DNDENEON_00296	1688.BCUN_0550	2e-71	276.2	Bifidobacteriales													Bacteria	2GNWT@201174,4CZMM@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_00297	1688.BCUN_0845	4.2e-38	167.2	Bifidobacteriales													Bacteria	2IR58@201174,4D1AN@85004,COG1196@1,COG1196@2	NA|NA|NA	D	nuclear chromosome segregation
DNDENEON_00300	401473.BDP_0960	4.8e-254	883.6	Bifidobacteriales													Bacteria	2GM5W@201174,4D0A1@85004,COG3451@1,COG3451@2	NA|NA|NA	U	Type IV secretory pathway, VirB4
DNDENEON_00303	401473.BDP_0959	7.6e-288	996.1	Bifidobacteriales													Bacteria	2GNQ7@201174,4D08H@85004,COG3505@1,COG3505@2	NA|NA|NA	U	TraM recognition site of TraD and TraG
DNDENEON_00309	1122228.AQXR01000009_gene1398	4.4e-79	300.8	Bifidobacteriales	bcgIB		2.1.1.72,3.1.21.3	ko:K01154,ko:K03427					ko00000,ko01000,ko02048				Bacteria	2IPXW@201174,4D0XX@85004,COG0732@1,COG0732@2	NA|NA|NA	V	Type I restriction modification DNA specificity domain
DNDENEON_00310	1111121.HMPREF1247_0878	7.9e-279	966.1	Coriobacteriia													Bacteria	2GP6Y@201174,4CXUT@84998,COG0286@1,COG0286@2	NA|NA|NA	V	N-6 DNA Methylase
DNDENEON_00311	78346.BRUM_1707	2.7e-84	318.2	Bifidobacteriales	pin	GO:0000150,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140097,GO:1901360											Bacteria	2HSUX@201174,4CZNP@85004,COG1961@1,COG1961@2	NA|NA|NA	L	Resolvase, N terminal domain
DNDENEON_00312	1688.BCUN_0746	3.4e-61	241.9	Bacteria													Bacteria	COG2253@1,COG2253@2	NA|NA|NA	V	Psort location Cytoplasmic, score
DNDENEON_00313	1688.BCUN_0745	6.1e-38	163.7	Bifidobacteriales													Bacteria	29W78@1,2H8PE@201174,30HSF@2,4D2F1@85004	NA|NA|NA		
DNDENEON_00315	158787.BSCA_0928	3.1e-42	178.3	Bifidobacteriales													Bacteria	2BFV3@1,2IT9I@201174,329QD@2,4D1CE@85004	NA|NA|NA		
DNDENEON_00317	401473.BDP_0920	1.2e-80	306.2	Bifidobacteriales													Bacteria	2E5BJ@1,2IMHH@201174,3303M@2,4D12T@85004	NA|NA|NA		
DNDENEON_00319	479437.Elen_0870	0.0	1395.6	Actinobacteria	XK27_00500												Bacteria	2HCII@201174,COG0553@1,COG0553@2,COG0827@1,COG0827@2,COG4646@1,COG4646@2	NA|NA|NA	KL	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DNDENEON_00322	547043.BIFPSEUDO_03947	1e-19	104.4	Bifidobacteriales													Bacteria	29W77@1,2IKED@201174,30HSE@2,4D0WN@85004	NA|NA|NA		
DNDENEON_00324	1437608.BBIA_2073	3.8e-195	688.3	Bifidobacteriales	topB		5.99.1.2	ko:K03169					ko00000,ko01000,ko03032				Bacteria	2GJU7@201174,4D044@85004,COG0550@1,COG0550@2	NA|NA|NA	L	DNA topoisomerase
DNDENEON_00326	356829.BITS_1856	2.5e-76	292.4	Bifidobacteriales	XK27_08505												Bacteria	2H5GR@201174,4D2P8@85004,COG2184@1,COG2184@2	NA|NA|NA	D	nucleotidyltransferase activity
DNDENEON_00327	78346.BRUM_1258	9.2e-37	159.1	Bifidobacteriales	yoeB			ko:K19158					ko00000,ko01000,ko02048				Bacteria	2IQAJ@201174,4D1D5@85004,COG4115@1,COG4115@2	NA|NA|NA	S	YoeB-like toxin of bacterial type II toxin-antitoxin system
DNDENEON_00328	78346.BRUM_1257	2.7e-31	141.0	Bifidobacteriales	yefM		2.3.1.15	ko:K08591,ko:K19158,ko:K19159	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004,ko02048				Bacteria	2GPZJ@201174,4D19X@85004,COG2161@1,COG2161@2	NA|NA|NA	D	Antitoxin component of a toxin-antitoxin (TA) module
DNDENEON_00329	1437603.BMON_1220	6.6e-32	143.3	Bifidobacteriales													Bacteria	2ATC3@1,2IPQS@201174,31IV4@2,4D15N@85004	NA|NA|NA		
DNDENEON_00330	401473.BDP_0942	0.0	1610.9	Bifidobacteriales	traA		3.1.11.5	ko:K03581	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJRK@201174,4D0HT@85004,COG0507@1,COG0507@2	NA|NA|NA	L	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
DNDENEON_00332	1680.BADO_1498	2.5e-81	308.5	Bifidobacteriales													Bacteria	2ADR2@1,2IDP4@201174,313GD@2,4D0KR@85004	NA|NA|NA		
DNDENEON_00333	216816.GS08_05830	2.8e-76	292.0	Bifidobacteriales													Bacteria	2GW8P@201174,4D1U2@85004,COG3177@1,COG3177@2	NA|NA|NA	S	Fic/DOC family
DNDENEON_00334	401473.BDP_0938	1.5e-54	219.2	Bacteria				ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440				ko00000,ko00001,ko03029,ko03032,ko03400				Bacteria	COG0629@1,COG0629@2	NA|NA|NA	L	single-stranded DNA binding
DNDENEON_00338	401473.BDP_0937	6.6e-100	370.2	Bifidobacteriales	dnaQ		2.7.7.7	ko:K02342,ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2I2FU@201174,4D10C@85004,COG2176@1,COG2176@2	NA|NA|NA	L	Exonuclease, DNA polymerase III, epsilon subunit family
DNDENEON_00339	401473.BDP_0936	1.9e-95	355.5	Bifidobacteriales													Bacteria	29ZAV@1,2HZQ5@201174,30M99@2,4D17Y@85004	NA|NA|NA	S	Protein of unknown function (DUF2786)
DNDENEON_00342	1507.HMPREF0262_02454	1.5e-09	70.1	Clostridia													Bacteria	1VT65@1239,24EJJ@186801,2ECXH@1,336UQ@2	NA|NA|NA		
DNDENEON_00344	1122228.AQXR01000004_gene1206	2.1e-10	72.4	Bifidobacteriales				ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440				ko00000,ko00001,ko03029,ko03032,ko03400				Bacteria	2HCWH@201174,4D2N7@85004,COG0629@1,COG0629@2	NA|NA|NA	L	Single-strand binding protein family
DNDENEON_00345	547043.BIFPSEUDO_03397	7.7e-291	1005.7	Bifidobacteriales	recE	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008309,GO:0008409,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0034641,GO:0035312,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051908,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360	2.7.7.7,3.6.4.12	ko:K02335,ko:K02342,ko:K03654,ko:K03722,ko:K10906	ko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03430,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2IC59@201174,4CZY1@85004,COG0847@1,COG0847@2	NA|NA|NA	L	Psort location Cytoplasmic, score
DNDENEON_00346	566552.BIFCAT_01134	5.2e-116	423.7	Bifidobacteriales	def	GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564	3.5.1.88	ko:K01462					ko00000,ko01000				Bacteria	2GNZ9@201174,4CZ7M@85004,COG0242@1,COG0242@2	NA|NA|NA	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
DNDENEON_00347	547043.BIFPSEUDO_03394	1e-254	885.6	Bifidobacteriales	glmM	GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008966,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019438,GO:0019538,GO:0034641,GO:0034654,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046483,GO:0046777,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901576	5.4.2.10	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130		R02060	RC00408	ko00000,ko00001,ko01000			iAF987.Gmet_1886,iLJ478.TM0184,iSB619.SA_RS11275,iSBO_1134.SBO_3206	Bacteria	2GN87@201174,4CYZX@85004,COG1109@1,COG1109@2	NA|NA|NA	G	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DNDENEON_00348	547043.BIFPSEUDO_03392	0.0	2593.1	Bifidobacteriales	eccCa			ko:K03466					ko00000,ko03036	3.A.12			Bacteria	2GJBR@201174,4D09Y@85004,COG1674@1,COG1674@2	NA|NA|NA	D	FtsK/SpoIIIE family
DNDENEON_00349	547043.BIFPSEUDO_03391	9.6e-157	559.7	Bifidobacteriales													Bacteria	2IDEM@201174,4D0MP@85004,COG1716@1,COG1716@2	NA|NA|NA	T	Forkhead associated domain
DNDENEON_00350	547043.BIFPSEUDO_03390	1e-191	676.0	Bifidobacteriales													Bacteria	28ZMR@1,2IF0B@201174,2ZMCZ@2,4CZME@85004	NA|NA|NA		
DNDENEON_00351	547043.BIFPSEUDO_03388	4.4e-55	220.7	Bifidobacteriales													Bacteria	2BK54@1,2GQ4V@201174,32EIR@2,4D1AS@85004	NA|NA|NA		
DNDENEON_00352	547043.BIFPSEUDO_03387	5.3e-187	660.2	Bifidobacteriales													Bacteria	2AVZD@1,2INKR@201174,31MTS@2,4D15X@85004	NA|NA|NA		
DNDENEON_00353	547043.BIFPSEUDO_03386	1.2e-147	529.6	Bifidobacteriales													Bacteria	2AUDB@1,2IK4S@201174,31K1A@2,4D0XH@85004	NA|NA|NA		
DNDENEON_00354	547043.BIFPSEUDO_03385	1.9e-198	698.7	Bifidobacteriales													Bacteria	2A3NJ@1,2HEVI@201174,30S5Z@2,4D0D8@85004	NA|NA|NA		
DNDENEON_00355	547043.BIFPSEUDO_03384	0.0	1157.1	Bifidobacteriales				ko:K14645	ko02024,map02024				ko00000,ko00001,ko01000,ko01002,ko03110				Bacteria	2GMBS@201174,4CZY0@85004,COG1404@1,COG1404@2	NA|NA|NA	O	Subtilase family
DNDENEON_00357	547043.BIFPSEUDO_03382	1.5e-43	181.8	Bifidobacteriales													Bacteria	2GPU5@201174,4D17T@85004,COG4842@1,COG4842@2	NA|NA|NA	S	Proteins of 100 residues with WXG
DNDENEON_00358	547043.BIFPSEUDO_03381	1.1e-47	195.7	Bifidobacteriales	esxU												Bacteria	2IQV4@201174,4D1BM@85004,COG4842@1,COG4842@2	NA|NA|NA	S	Proteins of 100 residues with WXG
DNDENEON_00359	547043.BIFPSEUDO_03379	1.7e-225	788.5	Bifidobacteriales	snm												Bacteria	28MNM@1,2HZD8@201174,2ZAY5@2,4CZWC@85004	NA|NA|NA	S	WXG100 protein secretion system (Wss), protein YukD
DNDENEON_00360	547043.BIFPSEUDO_03378	0.0	1546.9	Bifidobacteriales				ko:K14645,ko:K14743	ko02024,map02024				ko00000,ko00001,ko01000,ko01002,ko03110				Bacteria	2GIRE@201174,4D026@85004,COG1404@1,COG1404@2	NA|NA|NA	O	Type VII secretion system ESX-1, transport TM domain B
DNDENEON_00361	547043.BIFPSEUDO_03377	5e-169	600.1	Bifidobacteriales													Bacteria	2BAF1@1,2H8KM@201174,323VH@2,4D2H7@85004	NA|NA|NA		
DNDENEON_00362	547043.BIFPSEUDO_03376	0.0	1713.7	Bifidobacteriales	pepN		3.4.11.2	ko:K01256	ko00480,ko01100,map00480,map01100		R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002				Bacteria	2GJJ4@201174,4CZH4@85004,COG0308@1,COG0308@2	NA|NA|NA	E	Peptidase family M1 domain
DNDENEON_00364	547043.BIFPSEUDO_03375	0.0	1164.4	Bifidobacteriales	rnj	GO:0003674,GO:0005488,GO:0005515,GO:0042802		ko:K12574	ko03018,map03018				ko00000,ko00001,ko01000,ko03019				Bacteria	2GIW7@201174,4CZEJ@85004,COG0595@1,COG0595@2	NA|NA|NA	J	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
DNDENEON_00365	566552.BIFCAT_01140	5.2e-173	613.6	Bifidobacteriales	dapA		4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ34@201174,4CZ34@85004,COG0329@1,COG0329@2	NA|NA|NA	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DNDENEON_00366	547043.BIFPSEUDO_03373	0.0	1718.4	Bifidobacteriales	pacS	GO:0000041,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0015677,GO:0016020,GO:0030001,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0051179,GO:0051234,GO:0071944	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016		R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5			Bacteria	2GIRF@201174,4CZ24@85004,COG2217@1,COG2217@2	NA|NA|NA	P	E1-E2 ATPase
DNDENEON_00367	1435051.BMOU_0651	5.7e-38	163.3	Bifidobacteriales	csoR	GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0042221,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0046688,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141		ko:K21600					ko00000,ko03000				Bacteria	2IQAC@201174,4D1A2@85004,COG1937@1,COG1937@2	NA|NA|NA	S	Metal-sensitive transcriptional repressor
DNDENEON_00368	547043.BIFPSEUDO_03371	4.1e-133	480.7	Bifidobacteriales	dapB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576	1.17.1.8	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R04198,R04199	RC00478	ko00000,ko00001,ko00002,ko01000			iJN678.dapB,iYO844.BSU22490	Bacteria	2GM2T@201174,4CZJ5@85004,COG0289@1,COG0289@2	NA|NA|NA	E	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
DNDENEON_00369	547043.BIFPSEUDO_03370	8.8e-243	845.9	Bifidobacteriales													Bacteria	2I2GK@201174,4CZ0T@85004,COG2271@1,COG2271@2	NA|NA|NA	G	Major Facilitator Superfamily
DNDENEON_00370	547043.BIFPSEUDO_03369	0.0	2626.3	Bifidobacteriales	uvrD2		3.6.4.12	ko:K03657,ko:K07465	ko03420,ko03430,map03420,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	2GM2E@201174,4CZ49@85004,COG0210@1,COG0210@2,COG2887@1,COG2887@2	NA|NA|NA	L	Belongs to the helicase family. UvrD subfamily
DNDENEON_00371	547043.BIFPSEUDO_03368	0.0	2621.3	Bifidobacteriales	uvrD		3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJD0@201174,4CYQU@85004,COG0210@1,COG0210@2,COG2887@1,COG2887@2	NA|NA|NA	L	PD-(D/E)XK nuclease superfamily
DNDENEON_00372	547043.BIFPSEUDO_03366	9.2e-259	899.0	Bifidobacteriales													Bacteria	2GIW5@201174,4CZ9N@85004,COG0515@1,COG0515@2	NA|NA|NA	KLT	Protein tyrosine kinase
DNDENEON_00373	547043.BIFPSEUDO_03365	0.0	3732.2	Bifidobacteriales				ko:K20276	ko02024,map02024				ko00000,ko00001				Bacteria	2GMKC@201174,4CZFT@85004,COG4733@1,COG4733@2	NA|NA|NA	S	Fibronectin type 3 domain
DNDENEON_00374	547043.BIFPSEUDO_03364	1.5e-224	785.4	Bifidobacteriales				ko:K03924					ko00000,ko01000				Bacteria	2GK07@201174,4CZ3M@85004,COG0714@1,COG0714@2	NA|NA|NA	S	ATPase family associated with various cellular activities (AAA)
DNDENEON_00375	547043.BIFPSEUDO_03363	6.5e-218	763.1	Bifidobacteriales													Bacteria	2GIWE@201174,4CZWT@85004,COG1721@1,COG1721@2	NA|NA|NA	S	Protein of unknown function DUF58
DNDENEON_00376	547043.BIFPSEUDO_03362	0.0	1508.0	Bifidobacteriales													Bacteria	2HQBB@201174,4CZ3X@85004,COG1305@1,COG1305@2	NA|NA|NA	E	Transglutaminase-like superfamily
DNDENEON_00377	547043.BIFPSEUDO_03361	3.8e-162	577.4	Bifidobacteriales			3.1.3.16	ko:K01090,ko:K20074					ko00000,ko01000,ko01009				Bacteria	2GJ3M@201174,4CZNH@85004,COG0631@1,COG0631@2	NA|NA|NA	T	Sigma factor PP2C-like phosphatases
DNDENEON_00378	547043.BIFPSEUDO_03360	1.1e-102	379.4	Bifidobacteriales													Bacteria	2GRHT@201174,4D0W6@85004,COG5602@1,COG5602@2	NA|NA|NA	B	Belongs to the OprB family
DNDENEON_00379	547043.BIFPSEUDO_03359	1.1e-101	375.9	Bifidobacteriales													Bacteria	2IIXF@201174,4D0UU@85004,COG1716@1,COG1716@2	NA|NA|NA	T	Forkhead associated domain
DNDENEON_00380	547043.BIFPSEUDO_03357	0.0	2534.2	Bifidobacteriales	rpoC	GO:0000428,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0030880,GO:0032991,GO:0040007,GO:0044424,GO:0044464,GO:0061695,GO:0071944,GO:1902494,GO:1990234	2.7.7.6	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	2GKWF@201174,4CZ1D@85004,COG0086@1,COG0086@2	NA|NA|NA	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DNDENEON_00381	547043.BIFPSEUDO_03356	0.0	2352.8	Bifidobacteriales	rpoB	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	2GJ81@201174,4CZ3W@85004,COG0085@1,COG0085@2	NA|NA|NA	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DNDENEON_00382	547043.BIFPSEUDO_03355	6.8e-100	370.2	Bifidobacteriales													Bacteria	2EJHA@1,2I4ZV@201174,33D88@2,4D2XA@85004	NA|NA|NA		
DNDENEON_00383	547043.BIFPSEUDO_03353	3.5e-182	644.0	Bifidobacteriales	mutY		2.1.1.37,2.1.3.15,6.4.1.2	ko:K00558,ko:K01962,ko:K01963,ko:K03575	ko00061,ko00270,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko03410,ko05206,map00061,map00270,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212,map03410,map05206	M00035,M00082,M00376	R00742,R04386,R04858	RC00003,RC00040,RC00253,RC00332,RC00367	ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036,ko03400				Bacteria	2GJD9@201174,4CYRB@85004,COG1194@1,COG1194@2	NA|NA|NA	L	FES
DNDENEON_00384	547043.BIFPSEUDO_03354	1.3e-125	455.7	Bifidobacteriales	trmL	GO:0001510,GO:0002128,GO:0002130,GO:0002131,GO:0002132,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016427,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052665,GO:0052666,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.207	ko:K03216					ko00000,ko01000,ko03016				Bacteria	2IHN9@201174,4CZ0E@85004,COG0219@1,COG0219@2	NA|NA|NA	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
DNDENEON_00385	566552.BIFCAT_01162	1.8e-251	874.8	Bifidobacteriales				ko:K09157					ko00000				Bacteria	2HHMF@201174,4CZGB@85004,COG2848@1,COG2848@2	NA|NA|NA	S	UPF0210 protein
DNDENEON_00386	1680.BADO_1402	7.1e-43	179.5	Bifidobacteriales	gcvR			ko:K07166					ko00000				Bacteria	2IKS1@201174,4D11D@85004,COG3830@1,COG3830@2	NA|NA|NA	T	Belongs to the UPF0237 family
DNDENEON_00387	1680.BADO_1401	0.0	1317.0	Bifidobacteriales	cscA		3.2.1.26	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00801,R00802,R02410,R03635,R03921,R06088	RC00028,RC00077	ko00000,ko00001,ko01000		GH32		Bacteria	2GJ9T@201174,4CZ8W@85004,COG1621@1,COG1621@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 32 family
DNDENEON_00388	1680.BADO_1400	7.9e-194	682.9	Bifidobacteriales				ko:K02529					ko00000,ko03000				Bacteria	2GJY9@201174,4CYU5@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00389	1680.BADO_1399	1.3e-122	445.7	Bifidobacteriales													Bacteria	2H1AM@201174,4CYSQ@85004,COG5578@1,COG5578@2	NA|NA|NA	S	Protein of unknown function, DUF624
DNDENEON_00390	1680.BADO_1398	9e-170	602.8	Bifidobacteriales				ko:K02026,ko:K17320	ko02010,map02010	M00207,M00603			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.29,3.A.1.1.9			Bacteria	2GJPQ@201174,4CYTJ@85004,COG0395@1,COG0395@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00391	1680.BADO_1397	3.2e-178	630.9	Bifidobacteriales				ko:K17319	ko02010,map02010	M00603			ko00000,ko00001,ko00002,ko02000	3.A.1.1.29,3.A.1.1.9			Bacteria	2GKSR@201174,4CZIC@85004,COG4209@1,COG4209@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00392	1680.BADO_1396	2.1e-307	1060.8	Bifidobacteriales				ko:K17318	ko02010,map02010	M00603			ko00000,ko00001,ko00002,ko02000	3.A.1.1.29,3.A.1.1.9			Bacteria	2I8SG@201174,4CZ4S@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_00393	1680.BADO_1395	2.9e-232	810.8	Bifidobacteriales	galK		2.7.1.6,2.7.7.12	ko:K00849,ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	M00362,M00554,M00632	R00955,R01092	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GJXI@201174,4CZNV@85004,COG0153@1,COG0153@2	NA|NA|NA	G	Belongs to the GHMP kinase family. GalK subfamily
DNDENEON_00394	566552.BIFCAT_01165	6.8e-250	869.4	Bifidobacteriales	galT		2.7.7.12	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	M00362,M00554,M00632	R00955	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	2I2DM@201174,4CYXZ@85004,COG1085@1,COG1085@2	NA|NA|NA	C	Galactose-1-phosphate uridyl transferase, N-terminal domain
DNDENEON_00395	1680.BADO_1393	3.4e-141	507.7	Bifidobacteriales	glpR			ko:K02444					ko00000,ko03000				Bacteria	2H5X4@201174,4CZMT@85004,COG1349@1,COG1349@2	NA|NA|NA	K	DeoR C terminal sensor domain
DNDENEON_00396	547043.BIFPSEUDO_03342	8.8e-228	795.8	Bifidobacteriales	pyrD		1.3.1.14,1.3.5.2,1.3.98.1	ko:K00226,ko:K00254,ko:K02823,ko:K17828	ko00240,ko01100,map00240,map01100	M00051	R01867,R01868,R01869	RC00051	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKC6@201174,4CYWW@85004,COG0167@1,COG0167@2	NA|NA|NA	F	Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor
DNDENEON_00397	547043.BIFPSEUDO_03341	3e-220	770.8	Bifidobacteriales	namA		1.6.99.1	ko:K00354			R00282	RC00001	ko00000,ko01000				Bacteria	2GK8E@201174,4CZ9Z@85004,COG1902@1,COG1902@2	NA|NA|NA	C	NADH:flavin oxidoreductase / NADH oxidase family
DNDENEON_00398	547043.BIFPSEUDO_03339	0.0	1427.9	Bifidobacteriales	pon1		2.4.1.129,3.4.16.4	ko:K05365,ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501		R04519	RC00005,RC00049	ko00000,ko00001,ko01000,ko01003,ko01011		GT51		Bacteria	2GK21@201174,4CZAZ@85004,COG0744@1,COG0744@2	NA|NA|NA	M	Transglycosylase
DNDENEON_00399	547043.BIFPSEUDO_03338	5.2e-133	480.3	Bifidobacteriales	glxR	GO:0000166,GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006109,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010675,GO:0016020,GO:0017076,GO:0019219,GO:0019222,GO:0030312,GO:0030551,GO:0030552,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043565,GO:0044212,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0062012,GO:0065007,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000874,GO:2001141		ko:K10914	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111				ko00000,ko00001,ko03000				Bacteria	2GMPN@201174,4CYYW@85004,COG0664@1,COG0664@2	NA|NA|NA	K	helix_turn_helix, cAMP Regulatory protein
DNDENEON_00400	547043.BIFPSEUDO_03337	1.9e-214	751.5	Bifidobacteriales	lplA		6.3.1.20	ko:K03800	ko00785,ko01100,map00785,map01100		R07770,R07771,R11143	RC00043,RC00070,RC00090,RC00992,RC02896	ko00000,ko00001,ko01000				Bacteria	2GJV5@201174,4CZYA@85004,COG0095@1,COG0095@2	NA|NA|NA	H	Biotin/lipoate A/B protein ligase family
DNDENEON_00401	547043.BIFPSEUDO_03336	1.7e-81	309.3	Bifidobacteriales													Bacteria	2IQB3@201174,4D11Z@85004,COG2314@1,COG2314@2	NA|NA|NA	J	TM2 domain
DNDENEON_00402	547043.BIFPSEUDO_03334	2.2e-193	681.4	Bifidobacteriales	leuB		1.1.1.85	ko:K00052	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R00994,R04426,R10052	RC00084,RC00417,RC03036	br01601,ko00000,ko00001,ko00002,ko01000				Bacteria	2GK44@201174,4CZ08@85004,COG0473@1,COG0473@2	NA|NA|NA	CE	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
DNDENEON_00403	547043.BIFPSEUDO_03333	0.0	1736.5	Bifidobacteriales	ptrB		3.4.21.83	ko:K01354	ko05142,ko05143,map05142,map05143				ko00000,ko00001,ko01000,ko01002				Bacteria	2GNA9@201174,4CZ2X@85004,COG1770@1,COG1770@2	NA|NA|NA	E	Peptidase, S9A B C family, catalytic domain protein
DNDENEON_00404	547043.BIFPSEUDO_03332	1.5e-236	825.1	Bifidobacteriales													Bacteria	2GKPS@201174,4CZ13@85004,COG4850@1,COG4850@2	NA|NA|NA	S	Uncharacterized conserved protein (DUF2183)
DNDENEON_00405	547043.BIFPSEUDO_03331	1e-69	269.2	Bifidobacteriales	gcvH			ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	M00532	R01221	RC00022,RC02834	ko00000,ko00001,ko00002				Bacteria	2IKN2@201174,4D0W7@85004,COG0509@1,COG0509@2	NA|NA|NA	E	The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein
DNDENEON_00406	547043.BIFPSEUDO_03330	9.6e-208	729.2	Bifidobacteriales	nudC	GO:0003674,GO:0003824,GO:0004551,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0030145,GO:0033554,GO:0034641,GO:0035529,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360	1.3.7.1,3.6.1.22	ko:K03426,ko:K20449	ko00760,ko01100,ko01120,ko04146,map00760,map01100,map01120,map04146		R00103,R03004,R03164,R11104	RC00002,RC02422	ko00000,ko00001,ko01000			iAF1260.b3996,iB21_1397.B21_03826,iBWG_1329.BWG_3656,iEC55989_1330.EC55989_4481,iECBD_1354.ECBD_4036,iECB_1328.ECB_03873,iECDH10B_1368.ECDH10B_4185,iECDH1ME8569_1439.ECDH1ME8569_3856,iECD_1391.ECD_03873,iECIAI1_1343.ECIAI1_4211,iECO103_1326.ECO103_4745,iECO111_1330.ECO111_4813,iECO26_1355.ECO26_5105,iECSE_1348.ECSE_4284,iECW_1372.ECW_m4355,iEKO11_1354.EKO11_4325,iETEC_1333.ETEC_4256,iEcDH1_1363.EcDH1_3998,iEcE24377_1341.EcE24377A_4539,iEcHS_1320.EcHS_A4230,iEcolC_1368.EcolC_4029,iJO1366.b3996,iPC815.YPO3736,iSSON_1240.SSON_4169,iUMNK88_1353.UMNK88_4837,iWFL_1372.ECW_m4355,iY75_1357.Y75_RS17065,iYL1228.KPN_04378	Bacteria	2GJZY@201174,4CZE5@85004,COG2816@1,COG2816@2	NA|NA|NA	L	NADH pyrophosphatase zinc ribbon domain
DNDENEON_00407	547043.BIFPSEUDO_03329	3.4e-160	570.9	Bifidobacteriales	mhpC												Bacteria	2I2GI@201174,4CYXW@85004,COG2267@1,COG2267@2	NA|NA|NA	I	Alpha/beta hydrolase family
DNDENEON_00408	547043.BIFPSEUDO_03327	1.3e-113	415.6	Bifidobacteriales													Bacteria	2GJGZ@201174,4CYT1@85004,COG1051@1,COG1051@2	NA|NA|NA	F	Domain of unknown function (DUF4916)
DNDENEON_00409	547043.BIFPSEUDO_03326	6e-61	240.0	Bifidobacteriales	trxA	GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748	1.8.1.8,1.8.1.9	ko:K00384,ko:K03671,ko:K03672	ko00450,ko04621,ko05418,map00450,map04621,map05418		R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000,ko03110				Bacteria	2IKP1@201174,4D11J@85004,COG0526@1,COG0526@2	NA|NA|NA	O	Belongs to the thioredoxin family
DNDENEON_00410	547043.BIFPSEUDO_03324	5.6e-170	603.6	Bifidobacteriales													Bacteria	2I2GH@201174,4CYVC@85004,COG3583@1,COG3583@2	NA|NA|NA	S	G5
DNDENEON_00411	547043.BIFPSEUDO_03323	2.1e-88	331.6	Bifidobacteriales													Bacteria	28PY9@1,2INBV@201174,2ZCI0@2,4D13Q@85004	NA|NA|NA		
DNDENEON_00412	547043.BIFPSEUDO_03321	0.0	1993.8	Bifidobacteriales	amyE		3.2.1.1	ko:K01176	ko00500,ko01100,ko04973,map00500,map01100,map04973		R02108,R02112,R11262		ko00000,ko00001,ko01000		GH13		Bacteria	2GM4Q@201174,4CYYI@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 13 family
DNDENEON_00413	547043.BIFPSEUDO_03320	1.3e-223	781.9	Bifidobacteriales													Bacteria	2I42G@201174,4D2WE@85004,COG1143@1,COG1143@2	NA|NA|NA	C	Polysaccharide pyruvyl transferase
DNDENEON_00414	547043.BIFPSEUDO_03319	2.3e-209	734.6	Bifidobacteriales				ko:K19427					ko00000,ko01000		GT2		Bacteria	2IPTK@201174,4D12W@85004,COG1215@1,COG1215@2	NA|NA|NA	M	Glycosyltransferase like family 2
DNDENEON_00415	547043.BIFPSEUDO_03318	1.9e-192	678.3	Bifidobacteriales			1.13.11.79	ko:K04719	ko00740,ko01100,map00740,map01100		R09083	RC00435,RC02413	ko00000,ko00001,ko01000				Bacteria	2IE9H@201174,4CZI3@85004,COG0778@1,COG0778@2	NA|NA|NA	C	Psort location Cytoplasmic, score 8.87
DNDENEON_00416	547043.BIFPSEUDO_03317	3e-206	724.2	Bifidobacteriales	wbbI	GO:0003674,GO:0003824,GO:0008194,GO:0008378,GO:0008921,GO:0016740,GO:0016757,GO:0016758,GO:0035250										iAF1260.b2034,iBWG_1329.BWG_1824,iECDH10B_1368.ECDH10B_2184,iECDH1ME8569_1439.ECDH1ME8569_1971,iECSF_1327.ECSF_1923,iEcDH1_1363.EcDH1_1623,iJO1366.b2034,iY75_1357.Y75_RS10645	Bacteria	2IEFR@201174,4CZQH@85004,COG0438@1,COG0438@2	NA|NA|NA	M	transferase activity, transferring glycosyl groups
DNDENEON_00417	547043.BIFPSEUDO_03316	1.9e-284	984.6	Bifidobacteriales													Bacteria	2IA1K@201174,4D0KU@85004,COG2244@1,COG2244@2	NA|NA|NA	S	Psort location CytoplasmicMembrane, score 9.99
DNDENEON_00418	547043.BIFPSEUDO_03315	4.6e-255	886.7	Bifidobacteriales													Bacteria	2CCRF@1,2H3I4@201174,334T0@2,4D23V@85004	NA|NA|NA	S	Psort location CytoplasmicMembrane, score 9.99
DNDENEON_00419	547043.BIFPSEUDO_03314	2.4e-189	667.9	Bifidobacteriales			2.4.1.166	ko:K00745					ko00000,ko01000		GT2		Bacteria	2I2GT@201174,4D2Y3@85004,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyltransferase like family 2
DNDENEON_00420	547043.BIFPSEUDO_03313	1.8e-158	565.1	Bifidobacteriales	cps1D												Bacteria	2HFT7@201174,4CZBS@85004,COG1442@1,COG1442@2	NA|NA|NA	M	Domain of unknown function (DUF4422)
DNDENEON_00421	547043.BIFPSEUDO_03311	0.0	2692.5	Bifidobacteriales	amyE		3.2.1.1	ko:K01176	ko00500,ko01100,ko04973,map00500,map01100,map04973		R02108,R02112,R11262		ko00000,ko00001,ko01000		GH13		Bacteria	2GM4Q@201174,4CYYI@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 13 family
DNDENEON_00423	547043.BIFPSEUDO_03310	1.5e-71	275.4	Bifidobacteriales													Bacteria	29XRD@1,2IT75@201174,30JH2@2,4D1B3@85004	NA|NA|NA		
DNDENEON_00424	547043.BIFPSEUDO_03309	1.6e-28	131.3	Bifidobacteriales				ko:K07729					ko00000,ko03000				Bacteria	2HZSM@201174,4D1JS@85004,COG1476@1,COG1476@2	NA|NA|NA	K	Cro/C1-type HTH DNA-binding domain
DNDENEON_00425	547043.BIFPSEUDO_03308	6.5e-74	283.5	Bifidobacteriales													Bacteria	2BIKN@1,2IQ4U@201174,32CTH@2,4D19Y@85004	NA|NA|NA		
DNDENEON_00426	547043.BIFPSEUDO_03307	4.1e-95	354.0	Bifidobacteriales			3.1.3.48	ko:K01104					ko00000,ko01000				Bacteria	2GMPR@201174,4D0GD@85004,COG0394@1,COG0394@2	NA|NA|NA	T	Low molecular weight phosphatase family
DNDENEON_00427	547043.BIFPSEUDO_03306	7.2e-246	856.3	Bifidobacteriales	wcoI			ko:K16692					ko00000,ko01000,ko01001				Bacteria	2GJ1Y@201174,4CZKW@85004,COG0489@1,COG0489@2,COG3944@1,COG3944@2	NA|NA|NA	DM	Psort location CytoplasmicMembrane, score
DNDENEON_00428	547043.BIFPSEUDO_03305	0.0	1874.4	Bifidobacteriales			3.2.1.20	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00028,R00801,R00802,R06087,R06088	RC00028,RC00049,RC00077	ko00000,ko00001,ko01000		GH31		Bacteria	2GP4V@201174,4D005@85004,COG1501@1,COG1501@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 31 family
DNDENEON_00429	547043.BIFPSEUDO_03304	6.5e-148	530.0	Bifidobacteriales				ko:K02026		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GK1V@201174,4CZVI@85004,COG0395@1,COG0395@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_00430	547043.BIFPSEUDO_03303	5e-162	577.0	Bifidobacteriales				ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GKJI@201174,4D0GQ@85004,COG1175@1,COG1175@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_00431	547043.BIFPSEUDO_03302	3e-270	937.2	Bifidobacteriales				ko:K02027		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2HZBJ@201174,4CZJJ@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_00432	547043.BIFPSEUDO_03301	1.4e-184	652.1	Bifidobacteriales													Bacteria	2GJBJ@201174,4CZ1Y@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Psort location Cytoplasmic, score
DNDENEON_00433	547043.BIFPSEUDO_03298	9.8e-183	646.0	Bifidobacteriales													Bacteria	2GJDS@201174,4D0SN@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00434	547043.BIFPSEUDO_03297	1.1e-222	778.9	Bifidobacteriales				ko:K02027		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2I3BP@201174,4CZDQ@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_00435	547043.BIFPSEUDO_03296	3.9e-162	577.4	Bifidobacteriales				ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GJGB@201174,4D084@85004,COG1175@1,COG1175@2	NA|NA|NA	G	PFAM binding-protein-dependent transport systems inner membrane component
DNDENEON_00436	547043.BIFPSEUDO_03295	6.6e-145	520.0	Bifidobacteriales				ko:K02026		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GNGG@201174,4CZP2@85004,COG0395@1,COG0395@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00437	547043.BIFPSEUDO_03294	0.0	1448.0	Bifidobacteriales			3.2.1.177	ko:K01811					ko00000,ko01000		GH31		Bacteria	2GP4V@201174,4D005@85004,COG1501@1,COG1501@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 31 family
DNDENEON_00438	566552.BIFCAT_01188	1.7e-55	221.9	Bifidobacteriales	yccF												Bacteria	2IKS5@201174,4D11K@85004,COG3304@1,COG3304@2	NA|NA|NA	S	Inner membrane component domain
DNDENEON_00439	566552.BIFCAT_01244	2e-103	381.7	Bifidobacteriales													Bacteria	2B5KQ@1,2HZXM@201174,31YFR@2,4D25N@85004	NA|NA|NA		
DNDENEON_00440	1680.BADO_1363	2.6e-40	171.0	Bifidobacteriales													Bacteria	2GITX@201174,4D0JX@85004,COG3274@1,COG3274@2	NA|NA|NA	S	enterobacterial common antigen metabolic process
DNDENEON_00441	566552.BIFCAT_01245	3.4e-116	424.5	Bifidobacteriales													Bacteria	2GITX@201174,4D0JX@85004,COG3274@1,COG3274@2	NA|NA|NA	S	enterobacterial common antigen metabolic process
DNDENEON_00442	1680.BADO_1646	8e-194	683.3	Bifidobacteriales			1.12.98.1	ko:K00441	ko00680,ko01100,ko01120,map00680,map01100,map01120		R03025	RC02628	ko00000,ko00001,ko01000				Bacteria	2GM7P@201174,4D0N5@85004,COG1035@1,COG1035@2	NA|NA|NA	C	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
DNDENEON_00443	1437610.BREU_0821	2.4e-83	315.8	Bifidobacteriales			1.13.11.79	ko:K04719	ko00740,ko01100,map00740,map01100		R09083	RC00435,RC02413	ko00000,ko00001,ko01000				Bacteria	2IE9H@201174,4CZI3@85004,COG0778@1,COG0778@2	NA|NA|NA	C	Psort location Cytoplasmic, score 8.87
DNDENEON_00444	509191.AEDB02000099_gene3986	4.6e-107	395.2	Ruminococcaceae													Bacteria	1TR1W@1239,24917@186801,3WJMN@541000,COG2244@1,COG2244@2	NA|NA|NA	S	Psort location CytoplasmicMembrane, score
DNDENEON_00445	931276.Cspa_c11890	2.5e-55	222.6	Clostridiaceae	pssF												Bacteria	1VDVI@1239,24HVA@186801,36MF5@31979,COG1215@1,COG1215@2	NA|NA|NA	M	Glycosyltransferase like family 2
DNDENEON_00446	768706.Desor_5190	2e-10	73.9	Clostridia													Bacteria	1VGVE@1239,24SDV@186801,COG3307@1,COG3307@2	NA|NA|NA	M	Psort location CytoplasmicMembrane, score 9.99
DNDENEON_00447	293826.Amet_0211	1.2e-64	253.8	Clostridiaceae													Bacteria	1V4VX@1239,24C2N@186801,36HW6@31979,COG2327@1,COG2327@2	NA|NA|NA	M	Polysaccharide pyruvyl transferase
DNDENEON_00448	762968.HMPREF9441_01639	4.5e-34	152.1	Bacteroidia	epsJ	GO:0003674,GO:0003824,GO:0016740,GO:0016757		ko:K19427					ko00000,ko01000		GT2		Bacteria	2G2Z8@200643,4NU3S@976,COG1216@1,COG1216@2	NA|NA|NA	S	group 2 family protein
DNDENEON_00449	1693.BMIN_0958	6.3e-129	467.2	Bifidobacteriales	MA20_43635												Bacteria	2ICTC@201174,4D0R2@85004,COG3774@1,COG3774@2	NA|NA|NA	M	Capsular polysaccharide synthesis protein
DNDENEON_00450	547043.BIFPSEUDO_03265	6.3e-204	716.8	Bifidobacteriales													Bacteria	2GM53@201174,4D0F1@85004,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyl transferase 4-like domain
DNDENEON_00451	547043.BIFPSEUDO_03264	2.6e-216	757.7	Bifidobacteriales													Bacteria	2IBM0@201174,4CZE4@85004,COG0438@1,COG0438@2	NA|NA|NA	M	Domain of unknown function (DUF1972)
DNDENEON_00452	547043.BIFPSEUDO_03262	2.1e-194	684.9	Bifidobacteriales				ko:K19424					ko00000,ko01000,ko01003		GT4		Bacteria	2GNR8@201174,4D0M2@85004,COG0438@1,COG0438@2	NA|NA|NA	M	Psort location Cytoplasmic, score 8.87
DNDENEON_00453	547043.BIFPSEUDO_03261	3.2e-239	833.9	Bifidobacteriales	MA20_17390			ko:K03867					ko00000,ko01000,ko01003		GT4		Bacteria	2HZCM@201174,4CZSE@85004,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyl transferases group 1
DNDENEON_00454	547043.BIFPSEUDO_03182	5.7e-85	320.1	Bifidobacteriales													Bacteria	2AWVC@1,2IPYB@201174,31NSP@2,4D15U@85004	NA|NA|NA	K	Cro/C1-type HTH DNA-binding domain
DNDENEON_00455	547043.BIFPSEUDO_03183	0.0	1854.0	Bifidobacteriales	pacL2		3.6.3.8	ko:K01537					ko00000,ko01000	3.A.3.2			Bacteria	2GJJC@201174,4CZ1I@85004,COG0474@1,COG0474@2	NA|NA|NA	P	Cation transporter/ATPase, N-terminus
DNDENEON_00456	547043.BIFPSEUDO_03185	8e-221	772.7	Bifidobacteriales	lacL		3.2.1.23	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100		R01105,R01678,R03355,R04783,R06114	RC00049,RC00452	ko00000,ko00001,ko01000				Bacteria	2GMAT@201174,4CYYS@85004,COG3250@1,COG3250@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_00457	401473.BDP_0984	8.9e-125	453.4	Bifidobacteriales													Bacteria	2GISN@201174,4CZA9@85004,COG0582@1,COG0582@2	NA|NA|NA	L	Phage integrase family
DNDENEON_00458	1688.BCUN_0982	6.3e-38	164.5	Bifidobacteriales													Bacteria	2B5N5@1,2GZBA@201174,31YHE@2,4D2BD@85004	NA|NA|NA		
DNDENEON_00466	561180.BIFGAL_03933	3.5e-11	74.3	Bifidobacteriales													Bacteria	2BFF7@1,2IN83@201174,3298X@2,4D15M@85004	NA|NA|NA		
DNDENEON_00469	1437610.BREU_1841	3.6e-10	71.6	Bifidobacteriales													Bacteria	2DNNA@1,2ISEY@201174,32Y8E@2,4D1A0@85004	NA|NA|NA		
DNDENEON_00471	401473.BDP_0930	8.8e-79	300.4	Bifidobacteriales													Bacteria	2I4ZI@201174,4D0ZY@85004,COG4889@1,COG4889@2	NA|NA|NA	L	helicase
DNDENEON_00473	78346.BRUM_1707	2e-88	332.0	Bifidobacteriales	pin	GO:0000150,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140097,GO:1901360											Bacteria	2HSUX@201174,4CZNP@85004,COG1961@1,COG1961@2	NA|NA|NA	L	Resolvase, N terminal domain
DNDENEON_00474	78346.BRUM_1706	4e-80	303.9	Bifidobacteriales													Bacteria	2ECXV@1,2H0ID@201174,336V0@2,4D2FQ@85004	NA|NA|NA		
DNDENEON_00475	1690.BPSG_1022	1.2e-63	250.4	Bifidobacteriales				ko:K07448,ko:K07452					ko00000,ko01000,ko02048				Bacteria	2HZJP@201174,4D0PY@85004,COG1715@1,COG1715@2	NA|NA|NA	V	Restriction endonuclease
DNDENEON_00478	1688.BCUN_0885	1.7e-55	221.9	Bifidobacteriales			3.1.21.3	ko:K01154					ko00000,ko01000,ko02048				Bacteria	2IPXW@201174,4D0XX@85004,COG0286@1,COG0286@2,COG0732@1,COG0732@2	NA|NA|NA	V	Type I restriction modification DNA specificity domain
DNDENEON_00479	1437608.BBIA_2538	6.4e-137	494.6	Bifidobacteriales	recQ	GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363	3.6.4.12,5.99.1.2	ko:K03169,ko:K03654,ko:K03657,ko:K06877,ko:K07462	ko03018,ko03410,ko03420,ko03430,ko03440,map03018,map03410,map03420,map03430,map03440				ko00000,ko00001,ko01000,ko03032,ko03400				Bacteria	2GJSS@201174,4D01D@85004,COG0514@1,COG0514@2	NA|NA|NA	F	RecQ zinc-binding
DNDENEON_00481	1680.BADO_1497	1e-11	77.0	Bacteria				ko:K06919					ko00000				Bacteria	COG3598@1,COG3598@2	NA|NA|NA	L	Psort location Cytoplasmic, score
DNDENEON_00486	78346.BRUM_0198	3.1e-24	118.6	Bifidobacteriales													Bacteria	2B5AP@1,2IF9M@201174,31Y4U@2,4D15J@85004	NA|NA|NA		
DNDENEON_00488	518635.BIFANG_02039	6.3e-17	92.8	Bifidobacteriales													Bacteria	2H1NZ@201174,4D23P@85004,COG2247@1,COG2247@2	NA|NA|NA	M	cell wall binding repeat
DNDENEON_00490	566552.BIFCAT_00154	3.3e-308	1063.5	Bifidobacteriales	pepD			ko:K08659					ko00000,ko01000,ko01002				Bacteria	2GM80@201174,4CYT0@85004,COG4690@1,COG4690@2	NA|NA|NA	E	Peptidase family C69
DNDENEON_00491	566552.BIFCAT_00156	4e-195	687.2	Bifidobacteriales	XK27_01805												Bacteria	2GMDK@201174,4CZIS@85004,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyltransferase like family 2
DNDENEON_00493	547043.BIFPSEUDO_02895	4.9e-108	397.5	Bifidobacteriales	icaR												Bacteria	2GMBW@201174,4CYUD@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_00495	547043.BIFPSEUDO_02894	8.6e-168	596.7	Bifidobacteriales	ftsY	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944		ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2,3.A.5.7			Bacteria	2GJQH@201174,4CZZX@85004,COG0552@1,COG0552@2	NA|NA|NA	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
DNDENEON_00496	547043.BIFPSEUDO_02893	4.5e-236	823.5	Bifidobacteriales	amt			ko:K03320					ko00000,ko02000	1.A.11			Bacteria	2GIZK@201174,4CZA0@85004,COG0004@1,COG0004@2	NA|NA|NA	U	Ammonium Transporter Family
DNDENEON_00497	158787.BSCA_0063	1e-54	219.2	Bifidobacteriales	glnB			ko:K04751	ko02020,map02020				ko00000,ko00001				Bacteria	2IKN1@201174,4D0VD@85004,COG0347@1,COG0347@2	NA|NA|NA	K	Nitrogen regulatory protein P-II
DNDENEON_00498	547043.BIFPSEUDO_02891	0.0	1204.5	Bifidobacteriales			2.7.7.19,2.7.7.59	ko:K00970,ko:K00990	ko02020,ko03018,map02020,map03018				ko00000,ko00001,ko01000,ko03019				Bacteria	2GMKT@201174,4D07P@85004,COG2844@1,COG2844@2	NA|NA|NA	O	Nucleotidyltransferase domain
DNDENEON_00499	547043.BIFPSEUDO_02890	1.2e-245	855.5	Bifidobacteriales	dnaB	GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0030312,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112				ko00000,ko00001,ko01000,ko03032				Bacteria	2GKXQ@201174,4CYY3@85004,COG0305@1,COG0305@2	NA|NA|NA	L	Participates in initiation and elongation during chromosome replication
DNDENEON_00500	547043.BIFPSEUDO_02889	1.7e-242	845.1	Bifidobacteriales	murD		3.4.21.10,6.3.2.13,6.3.2.9	ko:K01317,ko:K01925,ko:K01928,ko:K01932	ko00300,ko00471,ko00550,ko01100,map00300,map00471,map00550,map01100		R02783,R02788	RC00064,RC00090,RC00141	ko00000,ko00001,ko01000,ko01002,ko01011,ko04131				Bacteria	2GK18@201174,4CYTP@85004,COG0771@1,COG0771@2	NA|NA|NA	M	Domain of unknown function (DUF1727)
DNDENEON_00501	547043.BIFPSEUDO_02888	2.1e-137	495.0	Bifidobacteriales	cobQ			ko:K07009					ko00000			iSB619.SA_RS09800	Bacteria	2GKPV@201174,4CZJ1@85004,COG3442@1,COG3442@2	NA|NA|NA	S	CobB/CobQ-like glutamine amidotransferase domain
DNDENEON_00502	547043.BIFPSEUDO_02886	4.2e-26	123.6	Bifidobacteriales													Bacteria	2GS3M@201174,4D1FE@85004,COG3937@1,COG3937@2	NA|NA|NA	S	granule-associated protein
DNDENEON_00503	547043.BIFPSEUDO_02885	0.0	1103.2	Bifidobacteriales	ubiB			ko:K03688					ko00000				Bacteria	2GJQ6@201174,4CZ45@85004,COG0661@1,COG0661@2	NA|NA|NA	S	ABC1 family
DNDENEON_00504	547043.BIFPSEUDO_02884	4.1e-192	677.2	Bifidobacteriales				ko:K02529					ko00000,ko03000				Bacteria	2GJV7@201174,4CZND@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Periplasmic binding protein domain
DNDENEON_00505	547043.BIFPSEUDO_02883	1.1e-242	845.5	Bifidobacteriales				ko:K02027		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GNYN@201174,4D08X@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_00506	566552.BIFCAT_02007	3e-08	64.3	Bifidobacteriales				ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GMJG@201174,4D0BR@85004,COG1175@1,COG1175@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_00507	547043.BIFPSEUDO_02882	3.1e-167	594.3	Bifidobacteriales				ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GMJG@201174,4D0BR@85004,COG1175@1,COG1175@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_00508	547043.BIFPSEUDO_02880	9.3e-147	526.2	Bifidobacteriales				ko:K02026		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GJNN@201174,4D039@85004,COG0395@1,COG0395@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00509	547043.BIFPSEUDO_02879	0.0	1350.9	Bifidobacteriales			3.2.1.185	ko:K09955,ko:K18205					ko00000,ko01000		GH127		Bacteria	2GM60@201174,4CYSU@85004,COG3533@1,COG3533@2	NA|NA|NA	S	Beta-L-arabinofuranosidase, GH127
DNDENEON_00510	547043.BIFPSEUDO_02878	0.0	3529.2	Bifidobacteriales	sca1		3.2.1.187	ko:K18206,ko:K21449					ko00000,ko01000,ko02000	1.B.40.2	GH121		Bacteria	2H8PD@201174,4D2YI@85004,COG1196@1,COG1196@2,COG3408@1,COG3408@2	NA|NA|NA	DG	Bacterial Ig-like domain (group 4)
DNDENEON_00511	547043.BIFPSEUDO_02877	0.0	2021.1	Bifidobacteriales													Bacteria	2I911@201174,4D2SA@85004,COG3507@1,COG3507@2	NA|NA|NA	G	Bacterial Ig-like domain (group 4)
DNDENEON_00512	547043.BIFPSEUDO_02876	2.7e-207	727.6	Bifidobacteriales	ugpQ		3.1.4.46	ko:K01126	ko00564,map00564		R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000				Bacteria	2GNM5@201174,4CYS4@85004,COG0584@1,COG0584@2	NA|NA|NA	C	Glycerophosphoryl diester phosphodiesterase family
DNDENEON_00513	547043.BIFPSEUDO_02875	2.7e-117	427.9	Bifidobacteriales	upp	GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.2.9	ko:K00761	ko00240,ko01100,map00240,map01100		R00966	RC00063	ko00000,ko00001,ko01000				Bacteria	2GPJE@201174,4CYVS@85004,COG0035@1,COG0035@2	NA|NA|NA	F	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DNDENEON_00514	547043.BIFPSEUDO_02874	3.9e-91	341.3	Bifidobacteriales													Bacteria	28MMU@1,2HAD5@201174,2ZAXG@2,4CZ1Q@85004	NA|NA|NA		
DNDENEON_00515	547043.BIFPSEUDO_02873	1e-223	782.3	Bifidobacteriales	mutT		3.6.1.13,3.6.1.55	ko:K01515,ko:K03574,ko:K08296	ko00230,map00230		R01054	RC00002	ko00000,ko00001,ko01000,ko03400				Bacteria	2GNRV@201174,4CZ90@85004,COG0494@1,COG0494@2,COG2062@1,COG2062@2	NA|NA|NA	LT	Phosphoglycerate mutase family
DNDENEON_00516	547043.BIFPSEUDO_02872	0.0	1466.4	Bifidobacteriales	ppk		2.7.4.1	ko:K00937	ko00190,ko03018,map00190,map03018				ko00000,ko00001,ko01000,ko03019				Bacteria	2GJ0B@201174,4CYXH@85004,COG0855@1,COG0855@2	NA|NA|NA	P	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DNDENEON_00518	547043.BIFPSEUDO_02870	5.5e-141	506.9	Bifidobacteriales	cpaE	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464		ko:K04562					ko00000,ko02035				Bacteria	2HZIH@201174,4D0JG@85004,COG0455@1,COG0455@2	NA|NA|NA	D	bacterial-type flagellum organization
DNDENEON_00519	547043.BIFPSEUDO_02869	2.7e-185	654.4	Bifidobacteriales	cpaF			ko:K02283					ko00000,ko02035,ko02044				Bacteria	2GKKJ@201174,4CZF2@85004,COG4962@1,COG4962@2	NA|NA|NA	U	Type II IV secretion system protein
DNDENEON_00520	547043.BIFPSEUDO_02868	1.4e-125	455.7	Bifidobacteriales				ko:K12510					ko00000,ko02044				Bacteria	2GRXU@201174,4D1A3@85004,COG4965@1,COG4965@2	NA|NA|NA	U	Type ii secretion system
DNDENEON_00521	547043.BIFPSEUDO_02867	1.7e-88	332.0	Bifidobacteriales	gspF			ko:K12510,ko:K12511					ko00000,ko02044				Bacteria	2I2FP@201174,4D16W@85004,COG2064@1,COG2064@2	NA|NA|NA	NU	Type II secretion system (T2SS), protein F
DNDENEON_00522	547043.BIFPSEUDO_02865	1.3e-42	178.7	Bifidobacteriales													Bacteria	2EHCF@1,2GR72@201174,33B4A@2,4D1FR@85004	NA|NA|NA	S	Protein of unknown function (DUF4244)
DNDENEON_00523	547043.BIFPSEUDO_02864	5.1e-60	236.9	Bifidobacteriales				ko:K12513					ko00000,ko02044				Bacteria	2GT3N@201174,4D1E4@85004,COG4961@1,COG4961@2	NA|NA|NA	U	TadE-like protein
DNDENEON_00524	566552.BIFCAT_01987	5.2e-55	220.3	Bifidobacteriales													Bacteria	2DRBM@1,2HZRZ@201174,33B4F@2,4D1G6@85004	NA|NA|NA	S	TIGRFAM helicase secretion neighborhood TadE-like protein
DNDENEON_00525	547043.BIFPSEUDO_02862	1.9e-214	751.5	Bifidobacteriales	dagK	GO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901576,GO:1903509	2.7.1.107	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110		R02240	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	2GK3P@201174,4CZ1S@85004,COG1597@1,COG1597@2	NA|NA|NA	I	Diacylglycerol kinase catalytic domain protein
DNDENEON_00526	547043.BIFPSEUDO_02861	6e-193	679.9	Bifidobacteriales													Bacteria	28H6R@1,2I9RC@201174,2Z7J3@2,4CZ7J@85004	NA|NA|NA	S	Psort location CytoplasmicMembrane, score
DNDENEON_00527	547043.BIFPSEUDO_02860	4.2e-96	357.5	Bifidobacteriales													Bacteria	2GND5@201174,4CZUU@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_00528	547043.BIFPSEUDO_02859	0.0	1362.1	Bifidobacteriales	dnaX	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030234,GO:0030337,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0042575,GO:0042802,GO:0043170,GO:0043846,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050790,GO:0061695,GO:0065007,GO:0065009,GO:0071704,GO:0090304,GO:0098772,GO:1901360,GO:1901576,GO:1902494,GO:1990234	2.7.7.7	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2GJKA@201174,4CZMY@85004,COG2812@1,COG2812@2	NA|NA|NA	L	DNA polymerase III subunit gamma tau
DNDENEON_00529	566552.BIFCAT_01982	2.2e-105	388.3	Bifidobacteriales	recR	GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576		ko:K06187	ko03440,map03440				ko00000,ko00001,ko03400				Bacteria	2GJY0@201174,4CZRI@85004,COG0353@1,COG0353@2	NA|NA|NA	L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DNDENEON_00530	547043.BIFPSEUDO_02856	3.4e-135	487.6	Bifidobacteriales	ask	GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006553,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0019877,GO:0030312,GO:0040007,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.3,2.7.2.4	ko:K00928,ko:K12524	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480,R01773,R01775	RC00002,RC00043,RC00087	ko00000,ko00001,ko00002,ko01000				Bacteria	2GN0G@201174,4CYSD@85004,COG0527@1,COG0527@2	NA|NA|NA	E	Amino acid kinase family
DNDENEON_00531	566552.BIFCAT_01979	1.4e-96	359.0	Bifidobacteriales	askB		1.1.1.3,2.7.2.4	ko:K00928,ko:K12524	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480,R01773,R01775	RC00002,RC00043,RC00087	ko00000,ko00001,ko00002,ko01000				Bacteria	2GN0G@201174,4D00P@85004,COG0527@1,COG0527@2	NA|NA|NA	E	ACT domain
DNDENEON_00532	547043.BIFPSEUDO_02854	1.8e-209	734.9	Bifidobacteriales	asd	GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016620,GO:0016903,GO:0030312,GO:0036094,GO:0040007,GO:0043891,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0071944,GO:0097159,GO:1901265,GO:1901363	1.2.1.11,1.2.1.12	ko:K00133,ko:K00134	ko00010,ko00260,ko00261,ko00270,ko00300,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04066,ko05010,map00010,map00260,map00261,map00270,map00300,map00710,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04066,map05010	M00001,M00002,M00003,M00016,M00017,M00018,M00033,M00165,M00166,M00308,M00525,M00526,M00527,M00552	R01061,R02291	RC00149,RC00684	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147				Bacteria	2GJJ8@201174,4CZPY@85004,COG0136@1,COG0136@2	NA|NA|NA	E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DNDENEON_00533	1680.BADO_0152	9.9e-67	259.2	Bifidobacteriales													Bacteria	2B9TE@1,2H7S8@201174,32369@2,4D2EA@85004	NA|NA|NA		
DNDENEON_00534	1437609.BCAL_0740	4.8e-31	141.4	Bifidobacteriales													Bacteria	2B175@1,2GSNY@201174,31TMG@2,4D1KN@85004	NA|NA|NA		
DNDENEON_00535	1437609.BCAL_0739	4e-45	188.3	Bifidobacteriales													Bacteria	2IAQ5@201174,4D0E3@85004,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
DNDENEON_00536	1437609.BCAL_0738	2.1e-33	150.2	Bacteria			2.7.13.3	ko:K07675,ko:K20263	ko02020,ko02024,map02020,map02024	M00473,M00818			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	COG4585@1,COG4585@2	NA|NA|NA	T	Histidine kinase
DNDENEON_00537	547043.BIFPSEUDO_02853	2.4e-115	421.4	Bifidobacteriales													Bacteria	2C7PT@1,2GM64@201174,2ZXN2@2,4CYPY@85004	NA|NA|NA		
DNDENEON_00538	547043.BIFPSEUDO_02852	1.5e-302	1044.6	Bifidobacteriales													Bacteria	2GNKK@201174,4CZMC@85004,COG1409@1,COG1409@2	NA|NA|NA	S	Calcineurin-like phosphoesterase
DNDENEON_00539	547043.BIFPSEUDO_02851	0.0	1271.1	Bifidobacteriales	leuA	GO:0000287,GO:0003674,GO:0003824,GO:0003852,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016746,GO:0019752,GO:0030145,GO:0030955,GO:0031420,GO:0040007,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046872,GO:0046912,GO:0046914,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.3.13	ko:K01649	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	M00432	R01213	RC00004,RC00470,RC02754	br01601,ko00000,ko00001,ko00002,ko01000				Bacteria	2GISX@201174,4CZYW@85004,COG0119@1,COG0119@2	NA|NA|NA	E	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DNDENEON_00540	547043.BIFPSEUDO_02850	0.0	1164.4	Bifidobacteriales			3.2.1.99	ko:K06113					ko00000,ko01000		GH43		Bacteria	2IECJ@201174,4D07X@85004,COG3507@1,COG3507@2	NA|NA|NA	G	C-terminal of Glycosyl hydrolases family 43
DNDENEON_00541	401473.BDP_0236	7.9e-256	889.4	Bifidobacteriales			3.2.1.99	ko:K06113					ko00000,ko01000		GH43		Bacteria	2IECJ@201174,4CZF0@85004,COG3507@1,COG3507@2	NA|NA|NA	G	C-terminal of Glycosyl hydrolases family 43
DNDENEON_00542	547043.BIFPSEUDO_02849	0.0	1415.6	Bifidobacteriales			3.2.1.97	ko:K17624					ko00000,ko01000		GH101		Bacteria	2GJJP@201174,4CZFV@85004,COG3940@1,COG3940@2	NA|NA|NA	G	Glycosyl hydrolases family 43
DNDENEON_00543	547043.BIFPSEUDO_02847	2.7e-194	684.5	Bifidobacteriales													Bacteria	2GJ5Q@201174,4D040@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00544	547043.BIFPSEUDO_02845	1.3e-203	715.3	Bifidobacteriales	abf												Bacteria	2GJJP@201174,4CZVP@85004,COG3940@1,COG3940@2	NA|NA|NA	G	Glycosyl hydrolases family 43
DNDENEON_00545	401473.BDP_0240	1.1e-292	1011.9	Bifidobacteriales				ko:K17318	ko02010,map02010	M00603			ko00000,ko00001,ko00002,ko02000	3.A.1.1.29,3.A.1.1.9			Bacteria	2I8SG@201174,4D03G@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_00546	401473.BDP_0241	4.6e-169	600.5	Bifidobacteriales				ko:K17319	ko02010,map02010	M00603			ko00000,ko00001,ko00002,ko02000	3.A.1.1.29,3.A.1.1.9			Bacteria	2GKSR@201174,4CZIC@85004,COG4209@1,COG4209@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00547	401473.BDP_0242	1.7e-163	582.0	Bifidobacteriales				ko:K02026,ko:K17320	ko02010,map02010	M00207,M00603			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.29,3.A.1.1.9			Bacteria	2GJPQ@201174,4CYTJ@85004,COG0395@1,COG0395@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_00548	401473.BDP_0243	1.9e-184	651.7	Bifidobacteriales													Bacteria	2I4N1@201174,4D2X4@85004,COG1621@1,COG1621@2	NA|NA|NA	G	beta-fructofuranosidase activity
DNDENEON_00549	1435051.BMOU_0546	8.5e-101	373.2	Bifidobacteriales													Bacteria	2H1AM@201174,4CYSQ@85004,COG5578@1,COG5578@2	NA|NA|NA	S	Protein of unknown function, DUF624
DNDENEON_00550	547043.BIFPSEUDO_02839	1.1e-25	122.5	Bifidobacteriales				ko:K09955					ko00000				Bacteria	2GM60@201174,4D08B@85004,COG3533@1,COG3533@2	NA|NA|NA	S	Beta-L-arabinofuranosidase, GH127
DNDENEON_00551	547043.BIFPSEUDO_02837	0.0	1256.1	Bifidobacteriales	mrcB		2.4.1.129,3.4.16.4	ko:K05365,ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501		R04519	RC00005,RC00049	ko00000,ko00001,ko01000,ko01003,ko01011		GT51		Bacteria	2GK21@201174,4CZQZ@85004,COG0744@1,COG0744@2	NA|NA|NA	M	Transglycosylase
DNDENEON_00552	547043.BIFPSEUDO_02836	2.7e-216	757.7	Bifidobacteriales	ino1	GO:0003674,GO:0003824,GO:0004512,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009405,GO:0009987,GO:0010125,GO:0010126,GO:0016137,GO:0016138,GO:0016853,GO:0016872,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044272,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1901657,GO:1901659	5.5.1.4	ko:K01858	ko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130		R07324	RC01804	ko00000,ko00001,ko01000				Bacteria	2GKHB@201174,4D02Z@85004,COG1260@1,COG1260@2	NA|NA|NA	I	Myo-inositol-1-phosphate synthase
DNDENEON_00553	547043.BIFPSEUDO_02834	1.2e-235	822.0	Bifidobacteriales	glf	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008767,GO:0009273,GO:0009987,GO:0016020,GO:0016853,GO:0016866,GO:0030312,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0071554,GO:0071766,GO:0071840,GO:0071944,GO:0097159,GO:1901265,GO:1901363	5.4.99.9	ko:K01854	ko00052,ko00520,map00052,map00520		R00505,R09009	RC00317,RC02396	ko00000,ko00001,ko01000			iNJ661.Rv3809c	Bacteria	2GK2Z@201174,4CZ2W@85004,COG0562@1,COG0562@2	NA|NA|NA	M	UDP-galactopyranose mutase
DNDENEON_00554	547043.BIFPSEUDO_02833	8.7e-191	672.9	Bifidobacteriales			3.6.1.27	ko:K19302	ko00550,map00550		R05627	RC00002	ko00000,ko00001,ko01000,ko01011				Bacteria	2HIXE@201174,4CYS6@85004,COG0671@1,COG0671@2	NA|NA|NA	I	PAP2 superfamily
DNDENEON_00555	547043.BIFPSEUDO_02832	0.0	1833.2	Bifidobacteriales	topA	GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0009892,GO:0010605,GO:0016020,GO:0016853,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031324,GO:0032069,GO:0032074,GO:0040007,GO:0043086,GO:0043167,GO:0043169,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060700,GO:0060701,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0140097	5.99.1.2	ko:K03168					ko00000,ko01000,ko03032,ko03400				Bacteria	2GJU7@201174,4CZ85@85004,COG0550@1,COG0550@2,COG1754@1,COG1754@2	NA|NA|NA	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DNDENEON_00556	547043.BIFPSEUDO_02831	9.2e-113	412.9	Bifidobacteriales	tmk	GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.4.9	ko:K00943	ko00240,ko01100,map00240,map01100	M00053	R02094,R02098	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	2GNTI@201174,4CYQ8@85004,COG0125@1,COG0125@2	NA|NA|NA	F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DNDENEON_00557	566552.BIFCAT_01732	5.4e-193	680.2	Bifidobacteriales	holB	GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0032991,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234	2.7.7.7	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2GJ8C@201174,4CZ4Y@85004,COG0470@1,COG0470@2	NA|NA|NA	L	DNA polymerase III
DNDENEON_00558	547043.BIFPSEUDO_02829	4.9e-185	653.7	Bifidobacteriales				ko:K02529					ko00000,ko03000				Bacteria	2GJRG@201174,4CZ05@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00559	547043.BIFPSEUDO_02827	6e-39	166.4	Bifidobacteriales	ptsH			ko:K11189					ko00000,ko02000	4.A.2.1			Bacteria	2GQX6@201174,4D19B@85004,COG1925@1,COG1925@2	NA|NA|NA	G	PTS HPr component phosphorylation site
DNDENEON_00560	547043.BIFPSEUDO_02825	4.6e-286	989.9	Bifidobacteriales	ptsI		2.7.3.9	ko:K08483	ko02060,map02060				ko00000,ko00001,ko01000,ko02000	8.A.7			Bacteria	2GIZZ@201174,4CZ52@85004,COG1080@1,COG1080@2	NA|NA|NA	G	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DNDENEON_00561	547043.BIFPSEUDO_02824	1.1e-106	392.5	Bifidobacteriales				ko:K06910					ko00000				Bacteria	2I5K1@201174,4CZSW@85004,COG1881@1,COG1881@2	NA|NA|NA	S	Phosphatidylethanolamine-binding protein
DNDENEON_00562	547043.BIFPSEUDO_02823	0.0	1080.9	Bifidobacteriales	pepD			ko:K08659					ko00000,ko01000,ko01002				Bacteria	2GM80@201174,4CZI5@85004,COG4690@1,COG4690@2	NA|NA|NA	E	Peptidase family C69
DNDENEON_00563	547043.BIFPSEUDO_02822	9.1e-289	998.8	Bifidobacteriales	fhs	GO:0000096,GO:0000097,GO:0000105,GO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006144,GO:0006520,GO:0006547,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009108,GO:0009110,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0052803,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.5.1.5,3.5.4.9,6.3.4.3	ko:K00288,ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00141,M00377	R00943,R01220,R01655	RC00026,RC00111,RC00202,RC00578	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GT0X@201174,4CZ7P@85004,COG2759@1,COG2759@2	NA|NA|NA	F	Formate-tetrahydrofolate ligase
DNDENEON_00564	547043.BIFPSEUDO_02821	6.7e-62	243.0	Bifidobacteriales													Bacteria	2II0W@201174,4D0VC@85004,COG1942@1,COG1942@2	NA|NA|NA	S	Macrophage migration inhibitory factor (MIF)
DNDENEON_00565	547043.BIFPSEUDO_02820	7.1e-95	353.2	Bifidobacteriales													Bacteria	2HZBR@201174,4CZM6@85004,COG2246@1,COG2246@2	NA|NA|NA	S	GtrA-like protein
DNDENEON_00566	547043.BIFPSEUDO_02819	6.1e-263	912.9	Bifidobacteriales													Bacteria	2GKMQ@201174,4CZ6D@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00567	547043.BIFPSEUDO_02818	1.5e-123	448.7	Bifidobacteriales			3.1.3.3,3.1.3.73	ko:K02226,ko:K22305	ko00260,ko00680,ko00860,ko01100,ko01120,ko01130,map00260,map00680,map00860,map01100,map01120,map01130	M00122	R00582,R04594,R11173	RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2GMXF@201174,4CZ0Z@85004,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
DNDENEON_00568	547043.BIFPSEUDO_02816	9.2e-184	649.4	Bifidobacteriales													Bacteria	2BR5C@1,2I8T9@201174,32K3E@2,4CZ8U@85004	NA|NA|NA		
DNDENEON_00569	547043.BIFPSEUDO_02815	5.2e-105	388.3	Bifidobacteriales													Bacteria	2IQHK@201174,4D0Q2@85004,COG3152@1,COG3152@2	NA|NA|NA	S	Protein of unknown function (DUF805)
DNDENEON_00570	547043.BIFPSEUDO_02813	5.5e-297	1026.2	Bifidobacteriales	gltX	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016			iNJ661.Rv2992c	Bacteria	2GJJS@201174,4CZHK@85004,COG0008@1,COG0008@2	NA|NA|NA	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DNDENEON_00573	547043.BIFPSEUDO_02810	3e-268	930.6	Bifidobacteriales													Bacteria	2HRDZ@201174,4CYQR@85004,COG1409@1,COG1409@2	NA|NA|NA	S	Calcineurin-like phosphoesterase
DNDENEON_00574	547043.BIFPSEUDO_02809	1.1e-139	502.7	Bifidobacteriales	ltbR												Bacteria	2GKB0@201174,4CZ9D@85004,COG1414@1,COG1414@2	NA|NA|NA	K	Transcriptional regulator, IclR family, C-terminal domain protein
DNDENEON_00575	547043.BIFPSEUDO_02807	7.1e-272	942.6	Bifidobacteriales	leuC	GO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009316,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494	4.2.1.33,4.2.1.35	ko:K01703	ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170	RC00497,RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000			iEcE24377_1341.EcE24377A_0075,iPC815.YPO0531	Bacteria	2GKT7@201174,4CYUC@85004,COG0065@1,COG0065@2	NA|NA|NA	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DNDENEON_00576	547043.BIFPSEUDO_02806	1.3e-131	475.7	Bifidobacteriales	leuD	GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016020,GO:0016053,GO:0019752,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.1.33,4.2.1.35	ko:K01704	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R10170	RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000			iNJ661.Rv2987c	Bacteria	2GJ8Z@201174,4CZ2F@85004,COG0066@1,COG0066@2	NA|NA|NA	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DNDENEON_00577	547043.BIFPSEUDO_02804	3.6e-200	704.1	Bifidobacteriales	pyrD		1.3.1.14,1.3.98.1	ko:K00226,ko:K02823,ko:K17828	ko00240,ko01100,map00240,map01100	M00051	R01867,R01869	RC00051	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJMN@201174,4CZKM@85004,COG0167@1,COG0167@2	NA|NA|NA	F	Dihydroorotate dehydrogenase
DNDENEON_00578	566552.BIFCAT_01708	1e-256	892.1	Bifidobacteriales	murA		2.5.1.7	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100		R00660	RC00350	ko00000,ko00001,ko01000,ko01011				Bacteria	2GJPW@201174,4CZN7@85004,COG0766@1,COG0766@2	NA|NA|NA	M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DNDENEON_00579	547043.BIFPSEUDO_02801	2.1e-173	614.8	Bifidobacteriales	plsC2		2.3.1.51	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R02241,R09381	RC00004,RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	2GKVA@201174,4CZG0@85004,COG0204@1,COG0204@2	NA|NA|NA	I	Phosphate acyltransferases
DNDENEON_00580	547043.BIFPSEUDO_02800	1.7e-179	635.2	Bifidobacteriales	gpsA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.1.1.94	ko:K00057	ko00564,ko01110,map00564,map01110		R00842,R00844	RC00029	ko00000,ko00001,ko01000				Bacteria	2GJSD@201174,4CZHP@85004,COG0240@1,COG0240@2	NA|NA|NA	I	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
DNDENEON_00581	547043.BIFPSEUDO_02799	3.8e-215	753.8	Bifidobacteriales	ddl	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008716,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016874,GO:0016879,GO:0016881,GO:0044424,GO:0044444,GO:0044464,GO:0050896	6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502		R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011			iAF1260.b0381,iB21_1397.B21_00332,iBWG_1329.BWG_0265,iE2348C_1286.E2348C_0317,iEC042_1314.EC042_0413,iEC55989_1330.EC55989_0386,iECBD_1354.ECBD_3283,iECB_1328.ECB_00328,iECDH10B_1368.ECDH10B_0338,iECDH1ME8569_1439.ECDH1ME8569_0367,iECD_1391.ECD_00328,iECH74115_1262.ECH74115_0453,iECIAI1_1343.ECIAI1_0377,iECIAI39_1322.ECIAI39_0301,iECO103_1326.ECO103_0356,iECO111_1330.ECO111_0411,iECO26_1355.ECO26_0414,iECSE_1348.ECSE_0401,iECSP_1301.ECSP_0441,iECs_1301.ECs0431,iETEC_1333.ETEC_0434,iEcDH1_1363.EcDH1_3227,iEcE24377_1341.EcE24377A_0406,iEcHS_1320.EcHS_A0447,iEcSMS35_1347.EcSMS35_0410,iEcolC_1368.EcolC_3251,iJO1366.b0381,iJR904.b0381,iSF_1195.SF0232,iSFxv_1172.SFxv_0245,iS_1188.S0254,iUMNK88_1353.UMNK88_429,iY75_1357.Y75_RS01965,iZ_1308.Z0477	Bacteria	2GITC@201174,4CZ1R@85004,COG1181@1,COG1181@2	NA|NA|NA	F	Belongs to the D-alanine--D-alanine ligase family
DNDENEON_00582	547043.BIFPSEUDO_02794	5.5e-174	617.1	Bifidobacteriales													Bacteria	2I3DW@201174,4CZJZ@85004,COG1266@1,COG1266@2	NA|NA|NA	S	CAAX protease self-immunity
DNDENEON_00583	547043.BIFPSEUDO_02793	1.7e-137	495.4	Bifidobacteriales													Bacteria	2GZI1@201174,4CZ0A@85004,COG0668@1,COG0668@2	NA|NA|NA	M	Mechanosensitive ion channel
DNDENEON_00584	547043.BIFPSEUDO_02792	5.9e-230	803.1	Bifidobacteriales	MA20_36090												Bacteria	2GMT6@201174,4CZ4Q@85004,COG1073@1,COG1073@2	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00585	547043.BIFPSEUDO_02791	2.4e-228	797.7	Bifidobacteriales	MA20_36090												Bacteria	2GMT6@201174,4CZ4Q@85004,COG1073@1,COG1073@2	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00586	547043.BIFPSEUDO_02790	6.3e-125	453.4	Bifidobacteriales													Bacteria	2I8SX@201174,4CZXQ@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_00587	547043.BIFPSEUDO_02789	7.5e-230	802.7	Bifidobacteriales	yhdR		2.6.1.1	ko:K11358	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230		R00355,R00694,R00734,R00896,R02433,R02619,R05052	RC00006	ko00000,ko00001,ko01000,ko01007				Bacteria	2GPM3@201174,4CZ6T@85004,COG0436@1,COG0436@2	NA|NA|NA	E	Psort location Cytoplasmic, score 8.87
DNDENEON_00588	547043.BIFPSEUDO_02787	5.2e-167	593.6	Bifidobacteriales	gnd		1.1.1.343,1.1.1.44	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	M00004,M00006	R01528,R10221	RC00001,RC00539	ko00000,ko00001,ko00002,ko01000				Bacteria	2I2DH@201174,4CZR5@85004,COG1023@1,COG1023@2	NA|NA|NA	G	6-phosphogluconate dehydrogenase, C-terminal domain
DNDENEON_00590	547043.BIFPSEUDO_02786	1.3e-227	795.4	Bifidobacteriales	gnuT			ko:K03299					ko00000,ko02000	2.A.8			Bacteria	2GITQ@201174,4CZR3@85004,COG2610@1,COG2610@2	NA|NA|NA	EG	GntP family permease
DNDENEON_00591	1435051.BMOU_1584	2.8e-83	314.7	Bifidobacteriales	gntK		2.7.1.12	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200		R01737	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	2GMW2@201174,4D0QX@85004,COG3265@1,COG3265@2	NA|NA|NA	F	Shikimate kinase
DNDENEON_00592	547043.BIFPSEUDO_02783	1.9e-127	461.8	Bifidobacteriales	gntR			ko:K19776					ko00000,ko03000				Bacteria	2GKBM@201174,4CYZS@85004,COG2186@1,COG2186@2	NA|NA|NA	K	FCD
DNDENEON_00593	547043.BIFPSEUDO_02781	4.9e-230	803.5	Bifidobacteriales	yxiO			ko:K06902	ko04138,map04138				ko00000,ko00001,ko02000,ko04131	2.A.1.24,9.A.15.1			Bacteria	2GJCW@201174,4CZU3@85004,COG2270@1,COG2270@2	NA|NA|NA	S	Vacuole effluxer Atg22 like
DNDENEON_00594	547043.BIFPSEUDO_02780	0.0	1331.6	Bifidobacteriales													Bacteria	2I8FI@201174,4CZDI@85004,COG0457@1,COG0457@2	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_00595	1680.BADO_0211	8.4e-30	135.6	Bifidobacteriales	rpmB	GO:0003674,GO:0003735,GO:0005198		ko:K02902	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GQNU@201174,4D17Q@85004,COG0227@1,COG0227@2	NA|NA|NA	J	Ribosomal L28 family
DNDENEON_00596	547043.BIFPSEUDO_02778	0.0	1689.1	Bifidobacteriales	recG	GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494	3.6.4.12	ko:K03655	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	2GKA3@201174,4CYTV@85004,COG1200@1,COG1200@2	NA|NA|NA	L	helicase superfamily c-terminal domain
DNDENEON_00597	78346.BRUM_0599	2.4e-91	341.7	Bifidobacteriales	rsmD		2.1.1.171	ko:K08316			R07234	RC00003	ko00000,ko01000,ko03009				Bacteria	2GQ3G@201174,4D0GU@85004,COG0742@1,COG0742@2	NA|NA|NA	L	Conserved hypothetical protein 95
DNDENEON_00598	1437610.BREU_0543	1.5e-90	339.7	Bifidobacteriales													Bacteria	2I2G7@201174,4D06R@85004,COG2207@1,COG2207@2	NA|NA|NA	K	helix_turn_helix, arabinose operon control protein
DNDENEON_00599	1437610.BREU_0545	3.2e-138	498.4	Bifidobacteriales	uhpT												Bacteria	2GMR4@201174,4D03I@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00600	1437610.BREU_0547	2.1e-148	531.9	Bifidobacteriales													Bacteria	2GNKU@201174,4CZVA@85004,COG0657@1,COG0657@2	NA|NA|NA	I	alpha/beta hydrolase fold
DNDENEON_00601	547043.BIFPSEUDO_02776	1e-147	529.6	Bifidobacteriales	trmD	GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.228,4.6.1.12	ko:K00554,ko:K01770	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R00597,R05637	RC00002,RC00003,RC00334,RC01440	ko00000,ko00001,ko00002,ko01000,ko03016				Bacteria	2GJ1G@201174,4CZ7A@85004,COG0336@1,COG0336@2	NA|NA|NA	J	Belongs to the RNA methyltransferase TrmD family
DNDENEON_00602	547043.BIFPSEUDO_02775	8e-108	396.4	Bifidobacteriales	rimM	GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360		ko:K02860					ko00000,ko03009				Bacteria	2GK4I@201174,4D0C6@85004,COG0806@1,COG0806@2	NA|NA|NA	J	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DNDENEON_00603	1435051.BMOU_1596	1.8e-34	151.4	Bifidobacteriales	CP_0960	GO:0008150,GO:0040007		ko:K06960					ko00000				Bacteria	2IQ4C@201174,4D16Z@85004,COG1837@1,COG1837@2	NA|NA|NA	S	Belongs to the UPF0109 family
DNDENEON_00604	547043.BIFPSEUDO_02773	3.9e-54	217.6	Bifidobacteriales	rpsP	GO:0000028,GO:0000217,GO:0000400,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006259,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016787,GO:0016788,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02959	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011,ko03029				Bacteria	2IKU0@201174,4D0PE@85004,COG0228@1,COG0228@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bS16 family
DNDENEON_00605	547043.BIFPSEUDO_02771	2.6e-178	631.3	Bifidobacteriales													Bacteria	2GK2H@201174,4CYS3@85004,COG3021@1,COG3021@2	NA|NA|NA	S	Endonuclease/Exonuclease/phosphatase family
DNDENEON_00606	547043.BIFPSEUDO_02770	3.5e-270	937.2	Bifidobacteriales	ffh	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0030312,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0034613,GO:0035639,GO:0036094,GO:0040007,GO:0042886,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0048500,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904	3.6.5.4	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko01000,ko02044	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9			Bacteria	2GK4R@201174,4CYY1@85004,COG0541@1,COG0541@2	NA|NA|NA	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DNDENEON_00607	547043.BIFPSEUDO_02769	3.5e-302	1043.5	Bifidobacteriales	cysS	GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576	6.1.1.16	ko:K01883	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GJF2@201174,4CZZ9@85004,COG0215@1,COG0215@2	NA|NA|NA	J	Belongs to the class-I aminoacyl-tRNA synthetase family
DNDENEON_00608	547043.BIFPSEUDO_02768	1.8e-150	538.5	Bifidobacteriales	guaA1		6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002				Bacteria	2GNA6@201174,4CYR4@85004,COG0518@1,COG0518@2	NA|NA|NA	F	Peptidase C26
DNDENEON_00609	547043.BIFPSEUDO_02767	0.0	1245.7	Bifidobacteriales	yjjK			ko:K15738					ko00000,ko02000	3.A.1.120.6			Bacteria	2GJ5M@201174,4CZCU@85004,COG0488@1,COG0488@2	NA|NA|NA	S	ABC transporter
DNDENEON_00610	547043.BIFPSEUDO_02766	4.2e-95	354.0	Bifidobacteriales													Bacteria	2AR06@1,2IF1Q@201174,31G8Z@2,4D090@85004	NA|NA|NA		
DNDENEON_00612	547043.BIFPSEUDO_02765	5.7e-92	343.6	Bifidobacteriales	ilvN	GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0030312,GO:0032991,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234	2.2.1.6	ko:K01653	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000			iECO103_1326.ilvN,iJN678.ilvN	Bacteria	2GJCH@201174,4CYXX@85004,COG0440@1,COG0440@2	NA|NA|NA	E	ACT domain
DNDENEON_00613	547043.BIFPSEUDO_02764	0.0	1272.7	Bifidobacteriales	ilvB		2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKU4@201174,4CYR0@85004,COG0028@1,COG0028@2	NA|NA|NA	H	Thiamine pyrophosphate enzyme, central domain
DNDENEON_00614	547043.BIFPSEUDO_02762	1.7e-135	488.8	Bifidobacteriales	rnc	GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363	3.1.26.3	ko:K03685	ko03008,ko05205,map03008,map05205				ko00000,ko00001,ko01000,ko03009,ko03019,ko03036				Bacteria	2GKER@201174,4CZ98@85004,COG0571@1,COG0571@2	NA|NA|NA	J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
DNDENEON_00615	547043.BIFPSEUDO_02761	1e-19	102.1	Bifidobacteriales	rpmF	GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904		ko:K02911	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011,ko03029				Bacteria	2GQP3@201174,4D18N@85004,COG0333@1,COG0333@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL32 family
DNDENEON_00616	547043.BIFPSEUDO_02760	1.8e-113	415.2	Bifidobacteriales	yceD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464		ko:K07040					ko00000				Bacteria	2GJTS@201174,4CZ0J@85004,COG1399@1,COG1399@2	NA|NA|NA	S	Uncharacterized ACR, COG1399
DNDENEON_00617	547043.BIFPSEUDO_02759	1.9e-133	481.9	Bifidobacteriales													Bacteria	2EKTZ@1,2HZD3@201174,33EHP@2,4CZV9@85004	NA|NA|NA		
DNDENEON_00618	547043.BIFPSEUDO_02758	1e-87	329.3	Bifidobacteriales	coaD		2.7.7.3	ko:K00954	ko00770,ko01100,map00770,map01100	M00120	R03035	RC00002	ko00000,ko00001,ko00002,ko01000				Bacteria	2GN1S@201174,4CYR5@85004,COG0669@1,COG0669@2	NA|NA|NA	H	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DNDENEON_00619	547043.BIFPSEUDO_02757	7.2e-58	229.6	Bifidobacteriales													Bacteria	2CAFG@1,2I800@201174,32ZDZ@2,4D107@85004	NA|NA|NA	S	Protein of unknown function (DUF3039)
DNDENEON_00620	547043.BIFPSEUDO_02756	1.7e-195	688.3	Bifidobacteriales	yghZ			ko:K19265					ko00000,ko01000				Bacteria	2GMT5@201174,4CZ25@85004,COG0667@1,COG0667@2	NA|NA|NA	C	Aldo/keto reductase family
DNDENEON_00621	547043.BIFPSEUDO_02755	3.2e-77	294.3	Bifidobacteriales	soxR												Bacteria	2HZMI@201174,4D0Y1@85004,COG0789@1,COG0789@2	NA|NA|NA	K	MerR, DNA binding
DNDENEON_00622	547043.BIFPSEUDO_02752	1.2e-120	439.1	Bifidobacteriales	rdgB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576	3.6.1.66,5.1.1.3	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100		R00260,R00426,R00720,R01855,R02100,R02720,R03531	RC00002,RC00302	ko00000,ko00001,ko01000,ko01011				Bacteria	2GM2B@201174,4CZ3F@85004,COG0127@1,COG0127@2	NA|NA|NA	F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DNDENEON_00623	566552.BIFCAT_01659	1.9e-138	498.4	Bifidobacteriales	rph	GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360,GO:1901361,GO:1901575	2.7.7.56,3.6.1.66	ko:K00989,ko:K02428	ko00230,map00230		R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000,ko03016				Bacteria	2GJFI@201174,4CZBF@85004,COG0689@1,COG0689@2	NA|NA|NA	J	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
DNDENEON_00624	547043.BIFPSEUDO_02749	1.5e-250	871.7	Bifidobacteriales	pncB	GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0030312,GO:0034355,GO:0034641,GO:0034654,GO:0043094,GO:0043173,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.4.21	ko:K00763	ko00760,ko01100,map00760,map01100		R01724	RC00033	ko00000,ko00001,ko01000				Bacteria	2GJAT@201174,4CYUR@85004,COG1488@1,COG1488@2	NA|NA|NA	F	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DNDENEON_00625	547043.BIFPSEUDO_02748	8.2e-243	845.9	Bifidobacteriales	murN		2.3.2.16	ko:K11693,ko:K12554	ko00550,ko01100,map00550,map01100		R08776,R08780	RC00055,RC00064,RC00096	ko00000,ko00001,ko01000,ko01011				Bacteria	2HZ91@201174,4CYZJ@85004,COG2348@1,COG2348@2	NA|NA|NA	V	Psort location Cytoplasmic, score 8.87
DNDENEON_00626	547043.BIFPSEUDO_02747	3.1e-221	774.2	Bifidobacteriales	murN		2.3.2.16	ko:K11693,ko:K12554	ko00550,ko01100,map00550,map01100		R08776,R08780	RC00055,RC00064,RC00096	ko00000,ko00001,ko01000,ko01011				Bacteria	2HZ91@201174,4CYZJ@85004,COG2348@1,COG2348@2	NA|NA|NA	V	Psort location Cytoplasmic, score 8.87
DNDENEON_00629	547043.BIFPSEUDO_02743	5.4e-181	640.2	Bifidobacteriales				ko:K07088					ko00000				Bacteria	2GN0R@201174,4CZ6C@85004,COG0679@1,COG0679@2	NA|NA|NA	S	Auxin Efflux Carrier
DNDENEON_00630	566552.BIFCAT_01651	0.0	1144.4	Bifidobacteriales	pgi	GO:0003674,GO:0003824,GO:0004347,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	5.3.1.9	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	M00001,M00004,M00114	R02739,R02740,R03321	RC00376,RC00563	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GJG0@201174,4CYVV@85004,COG0166@1,COG0166@2	NA|NA|NA	G	Belongs to the GPI family
DNDENEON_00631	547043.BIFPSEUDO_02738	1.5e-59	235.3	Bifidobacteriales	rplS	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02884	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHRT@201174,4D0V2@85004,COG0335@1,COG0335@2	NA|NA|NA	J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
DNDENEON_00632	547043.BIFPSEUDO_02737	6.7e-116	423.3	Bifidobacteriales	lepB	GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060				ko00000,ko00001,ko01000,ko01002				Bacteria	2GIYN@201174,4CZEY@85004,COG0681@1,COG0681@2	NA|NA|NA	U	Belongs to the peptidase S26 family
DNDENEON_00633	566552.BIFCAT_01647	1.5e-115	422.5	Bifidobacteriales	rnhB	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576	3.1.26.4	ko:K03470	ko03030,map03030				ko00000,ko00001,ko01000,ko03032				Bacteria	2GJFN@201174,4CZ1U@85004,COG0164@1,COG0164@2	NA|NA|NA	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DNDENEON_00634	547043.BIFPSEUDO_02735	5e-128	463.8	Bifidobacteriales				ko:K02003		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GM25@201174,4D0FV@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
DNDENEON_00635	547043.BIFPSEUDO_02734	2.5e-270	937.6	Bifidobacteriales				ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GKF3@201174,4D03X@85004,COG0577@1,COG0577@2	NA|NA|NA	V	Efflux ABC transporter, permease protein
DNDENEON_00636	566552.BIFCAT_01644	2.7e-166	591.3	Bifidobacteriales	mdcF			ko:K07088					ko00000				Bacteria	2GNIA@201174,4CZFX@85004,COG0679@1,COG0679@2	NA|NA|NA	S	Transporter, auxin efflux carrier (AEC) family protein
DNDENEON_00637	547043.BIFPSEUDO_02732	3.1e-231	807.4	Bifidobacteriales	dapE		3.5.1.18	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R02734	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000				Bacteria	2GK09@201174,4CZ9K@85004,COG0624@1,COG0624@2	NA|NA|NA	E	Peptidase dimerisation domain
DNDENEON_00638	1435051.BMOU_1626	4.3e-308	1063.9	Bifidobacteriales	rne	GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	3.1.26.12	ko:K08300,ko:K08301	ko03018,map03018	M00394			ko00000,ko00001,ko00002,ko01000,ko03009,ko03019				Bacteria	2GMM5@201174,4CYQT@85004,COG1530@1,COG1530@2	NA|NA|NA	J	Ribonuclease E/G family
DNDENEON_00639	547043.BIFPSEUDO_02728	2.4e-47	194.5	Bifidobacteriales	rplU	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02888	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQ9A@201174,4D10B@85004,COG0261@1,COG0261@2	NA|NA|NA	J	This protein binds to 23S rRNA in the presence of protein L20
DNDENEON_00640	1435051.BMOU_1628	2.6e-39	167.5	Bifidobacteriales	rpmA	GO:0000027,GO:0001558,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0040008,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048518,GO:0050789,GO:0050794,GO:0051128,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090069,GO:0090070,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904		ko:K02899	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQDI@201174,4D19N@85004,COG0211@1,COG0211@2	NA|NA|NA	J	Ribosomal L27 protein
DNDENEON_00641	547043.BIFPSEUDO_02726	2.3e-311	1074.7	Bifidobacteriales	obg	GO:0000287,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019538,GO:0032991,GO:0036211,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046777,GO:0046872,GO:0071704,GO:0071944,GO:1901564,GO:1990904		ko:K03979					ko00000,ko01000,ko03009				Bacteria	2GISB@201174,4CYWD@85004,COG0536@1,COG0536@2	NA|NA|NA	S	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DNDENEON_00642	547043.BIFPSEUDO_02725	1e-204	719.2	Bifidobacteriales	proB	GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.11	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	M00015	R00239	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000				Bacteria	2GM8U@201174,4CZ2B@85004,COG0263@1,COG0263@2	NA|NA|NA	E	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DNDENEON_00643	547043.BIFPSEUDO_02724	9.7e-233	812.4	Bifidobacteriales	aspC												Bacteria	2GJ7R@201174,4CZFY@85004,COG0436@1,COG0436@2	NA|NA|NA	E	DegT/DnrJ/EryC1/StrS aminotransferase family
DNDENEON_00645	547043.BIFPSEUDO_02722	1.2e-32	145.2	Bifidobacteriales	secE	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944		ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2			Bacteria	2HZQC@201174,4D18K@85004,COG0690@1,COG0690@2	NA|NA|NA	U	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
DNDENEON_00646	547043.BIFPSEUDO_02721	4.2e-128	464.2	Bifidobacteriales	nusG	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030312,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141		ko:K02601					ko00000,ko03009,ko03021				Bacteria	2GJFW@201174,4CYSH@85004,COG0250@1,COG0250@2	NA|NA|NA	K	Participates in transcription elongation, termination and antitermination
DNDENEON_00647	547043.BIFPSEUDO_02720	2.3e-72	278.1	Bifidobacteriales	rplK	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02867	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IFCK@201174,4D0PA@85004,COG0080@1,COG0080@2	NA|NA|NA	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DNDENEON_00648	547043.BIFPSEUDO_02719	3e-122	444.5	Bifidobacteriales	rplA	GO:0000027,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0017148,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045947,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02863	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GM51@201174,4CZFR@85004,COG0081@1,COG0081@2	NA|NA|NA	J	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
DNDENEON_00649	547043.BIFPSEUDO_02718	5.9e-143	513.5	Bifidobacteriales													Bacteria	2GN0S@201174,4CYXU@85004,COG2508@1,COG2508@2	NA|NA|NA	QT	PucR C-terminal helix-turn-helix domain
DNDENEON_00650	547043.BIFPSEUDO_02717	0.0	1444.1	Bifidobacteriales													Bacteria	2DX0J@1,2H683@201174,342TV@2,4CZAG@85004	NA|NA|NA		
DNDENEON_00651	547043.BIFPSEUDO_02716	1.3e-162	578.9	Bifidobacteriales	birA	GO:0000166,GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004077,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0006082,GO:0006464,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009305,GO:0009374,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0017053,GO:0017076,GO:0017144,GO:0018130,GO:0018271,GO:0019538,GO:0019752,GO:0019842,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033218,GO:0033293,GO:0034641,GO:0035639,GO:0036094,GO:0036211,GO:0042364,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046983,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681,GO:1990837	2.7.1.33,6.3.4.15	ko:K01947,ko:K03524	ko00770,ko00780,ko01100,map00770,map00780,map01100	M00120	R01074,R02971,R03018,R04391,R05145	RC00002,RC00017,RC00043,RC00070,RC00096,RC02896	ko00000,ko00001,ko00002,ko01000,ko03000				Bacteria	2GN8Q@201174,4D0R8@85004,COG0340@1,COG0340@2	NA|NA|NA	H	Biotin/lipoate A/B protein ligase family
DNDENEON_00652	547043.BIFPSEUDO_02715	6e-79	300.4	Bifidobacteriales	bioY	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03523	ko02010,map02010	M00581,M00582			ko00000,ko00001,ko00002,ko02000	2.A.88.1,2.A.88.2			Bacteria	2GJ53@201174,4D0BB@85004,COG1268@1,COG1268@2	NA|NA|NA	S	BioY family
DNDENEON_00653	547043.BIFPSEUDO_02714	0.0	1218.0	Bifidobacteriales	accA		6.3.4.14,6.4.1.2,6.4.1.3	ko:K11263	ko00061,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00741	R00742,R01859,R04385	RC00040,RC00097,RC00253,RC00367,RC00609	ko00000,ko00001,ko00002,ko01000				Bacteria	2GIZP@201174,4CYU4@85004,COG4770@1,COG4770@2	NA|NA|NA	I	Carbamoyl-phosphate synthase L chain, ATP binding domain protein
DNDENEON_00654	547043.BIFPSEUDO_02713	0.0	1076.6	Bifidobacteriales	pccB												Bacteria	2GIRU@201174,4CYSI@85004,COG4799@1,COG4799@2	NA|NA|NA	I	Carboxyl transferase domain
DNDENEON_00655	547043.BIFPSEUDO_02712	0.0	5841.9	Bifidobacteriales	fas		2.3.1.179	ko:K09458,ko:K11533	ko00061,ko00780,ko01100,ko01212,ko04931,map00061,map00780,map01100,map01212,map04931	M00082,M00083,M00572	R01624,R01626,R04355,R04428,R04429,R04533,R04534,R04535,R04536,R04537,R04543,R04544,R04566,R04568,R04724,R04726,R04952,R04953,R04954,R04955,R04957,R04958,R04960,R04961,R04963,R04964,R04965,R04966,R04968,R04969,R07762,R07763,R07764,R07765,R10115,R10119,R10700	RC00004,RC00029,RC00039,RC00052,RC00076,RC00117,RC00831,RC01095,RC02727,RC02728,RC02729,RC02857,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	2GIY4@201174,4CYXJ@85004,COG0304@1,COG0304@2,COG0331@1,COG0331@2,COG2030@1,COG2030@2,COG4981@1,COG4981@2	NA|NA|NA	I	Beta-ketoacyl synthase, C-terminal domain
DNDENEON_00657	547043.BIFPSEUDO_02710	1.2e-82	312.4	Bifidobacteriales	acpS	GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008897,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0018070,GO:0018193,GO:0018209,GO:0018215,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576	2.7.8.7,3.2.1.52	ko:K00997,ko:K01207	ko00520,ko00531,ko00770,ko01100,ko01501,map00520,map00531,map00770,map01100,map01501	M00628	R00022,R01625,R05963,R07809,R07810,R10831	RC00002,RC00049	ko00000,ko00001,ko00002,ko01000				Bacteria	2HZNB@201174,4D10J@85004,COG0736@1,COG0736@2	NA|NA|NA	I	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
DNDENEON_00658	547043.BIFPSEUDO_02708	0.0	1241.5	Bifidobacteriales	ams		2.4.1.4,3.2.1.1,5.4.99.16	ko:K05341,ko:K05343	ko00500,ko01100,map00500,map01100		R01557,R01823,R02108,R02112,R11262	RC00028,RC01816	ko00000,ko00001,ko01000		GH13		Bacteria	2GKT9@201174,4CYRW@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Alpha amylase, catalytic domain
DNDENEON_00660	547043.BIFPSEUDO_02706	2.4e-116	424.9	Bifidobacteriales													Bacteria	2B37S@1,2IDBE@201174,31VVT@2,4CZJV@85004	NA|NA|NA		
DNDENEON_00661	1435051.BMOU_1646	1.7e-41	174.9	Bifidobacteriales	rpsO	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031123,GO:0031124,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02956	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQA0@201174,4D10E@85004,COG0184@1,COG0184@2	NA|NA|NA	J	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DNDENEON_00662	547043.BIFPSEUDO_02704	0.0	1437.6	Bifidobacteriales	pnp	GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575	2.7.7.8	ko:K00962	ko00230,ko00240,ko03018,map00230,map00240,map03018	M00394	R00437,R00438,R00439,R00440	RC02795	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019				Bacteria	2GIT2@201174,4CYSW@85004,COG1185@1,COG1185@2	NA|NA|NA	J	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
DNDENEON_00663	566552.BIFCAT_01614	8.5e-91	339.7	Bifidobacteriales	lemA			ko:K03744					ko00000				Bacteria	2GPS4@201174,4CZE2@85004,COG1704@1,COG1704@2	NA|NA|NA	S	LemA family
DNDENEON_00664	547043.BIFPSEUDO_02702	0.0	1105.1	Bifidobacteriales													Bacteria	2HZD2@201174,4CZV5@85004,COG4907@1,COG4907@2	NA|NA|NA	S	Predicted membrane protein (DUF2207)
DNDENEON_00665	547043.BIFPSEUDO_02701	9.7e-171	605.9	Bifidobacteriales			1.1.1.65	ko:K05275	ko00750,ko01100,ko01120,map00750,map01100,map01120		R01708	RC00116	ko00000,ko00001,ko01000				Bacteria	2GJ6R@201174,4CZB6@85004,COG0667@1,COG0667@2	NA|NA|NA	C	Oxidoreductase, aldo keto reductase family protein
DNDENEON_00666	566552.BIFCAT_01611	3.9e-295	1020.0	Bifidobacteriales	yegQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464		ko:K08303	ko05120,map05120				ko00000,ko00001,ko01000,ko01002				Bacteria	2GKTB@201174,4CZA1@85004,COG0826@1,COG0826@2	NA|NA|NA	O	Peptidase family U32 C-terminal domain
DNDENEON_00667	566552.BIFCAT_01610	4.1e-184	650.6	Bifidobacteriales	yfiH	GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016679,GO:0016682,GO:0030312,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0046983,GO:0055114,GO:0071944		ko:K05810					ko00000,ko01000				Bacteria	2GN1M@201174,4CZBI@85004,COG1496@1,COG1496@2	NA|NA|NA	Q	Multi-copper polyphenol oxidoreductase laccase
DNDENEON_00668	547043.BIFPSEUDO_02697	2.5e-144	518.1	Bifidobacteriales	ispD	GO:0000166,GO:0000287,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016020,GO:0016114,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0032787,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044464,GO:0046490,GO:0046872,GO:0046914,GO:0050518,GO:0051483,GO:0051484,GO:0070567,GO:0071704,GO:0071944,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901576	1.1.1.405,2.7.7.40,2.7.7.60,4.6.1.12	ko:K00991,ko:K12506,ko:K21681	ko00040,ko00900,ko01100,ko01110,ko01130,map00040,map00900,map01100,map01110,map01130	M00096	R01525,R02921,R05633,R05637	RC00002,RC00089,RC01440	ko00000,ko00001,ko00002,ko01000				Bacteria	2GNHP@201174,4CYVZ@85004,COG1211@1,COG1211@2	NA|NA|NA	I	Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP)
DNDENEON_00669	566552.BIFCAT_01608	3.4e-126	457.6	Bifidobacteriales	pcp	GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:1901564	3.4.19.3	ko:K01304					ko00000,ko01000,ko01002				Bacteria	2GN39@201174,4CZ57@85004,COG2039@1,COG2039@2	NA|NA|NA	O	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
DNDENEON_00670	547043.BIFPSEUDO_02695	1.3e-58	234.2	Bifidobacteriales													Bacteria	2HZ99@201174,4CZ0S@85004,COG1196@1,COG1196@2	NA|NA|NA	D	nuclear chromosome segregation
DNDENEON_00671	566552.BIFCAT_01606	1.5e-266	924.9	Bifidobacteriales	pepC	GO:0000096,GO:0000098,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006508,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009063,GO:0009636,GO:0009987,GO:0016054,GO:0016787,GO:0019538,GO:0019752,GO:0042221,GO:0043170,GO:0043418,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0050667,GO:0050896,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	3.4.22.40	ko:K01372					ko00000,ko01000,ko01002				Bacteria	2GNYU@201174,4CZDZ@85004,COG3579@1,COG3579@2	NA|NA|NA	E	Peptidase C1-like family
DNDENEON_00672	547043.BIFPSEUDO_02693	3.3e-211	740.7	Bifidobacteriales	aroG	GO:0003674,GO:0003824,GO:0003849,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.54	ko:K01626	ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024	M00022	R01826	RC00435	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_2375,iAPECO1_1312.APECO1_3932,iECNA114_1301.ECNA114_0684,iECOK1_1307.ECOK1_2946,iECS88_1305.ECS88_2787,iECSF_1327.ECSF_0680,iEcSMS35_1347.EcSMS35_0777,iHN637.CLJU_RS07240,iLF82_1304.LF82_0146,iNRG857_1313.NRG857_03335,iSbBS512_1146.SbBS512_E1908,iUMN146_1321.UM146_03705,iUTI89_1310.UTI89_C2934,iYL1228.KPN_00758	Bacteria	2GMVF@201174,4CZMR@85004,COG0722@1,COG0722@2	NA|NA|NA	E	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DNDENEON_00673	547043.BIFPSEUDO_02692	1.3e-221	775.4	Bifidobacteriales	aroG	GO:0003674,GO:0003824,GO:0003849,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.54	ko:K01626	ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024	M00022	R01826	RC00435	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_2375,iAPECO1_1312.APECO1_3932,iECNA114_1301.ECNA114_0684,iECOK1_1307.ECOK1_2946,iECS88_1305.ECS88_2787,iECSF_1327.ECSF_0680,iEcSMS35_1347.EcSMS35_0777,iHN637.CLJU_RS07240,iLF82_1304.LF82_0146,iNRG857_1313.NRG857_03335,iSbBS512_1146.SbBS512_E1908,iUMN146_1321.UM146_03705,iUTI89_1310.UTI89_C2934,iYL1228.KPN_00758	Bacteria	2GMVF@201174,4CZ7I@85004,COG0722@1,COG0722@2	NA|NA|NA	E	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DNDENEON_00674	566552.BIFCAT_01603	1.8e-122	445.3	Bifidobacteriales	mtnN		3.2.2.9	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	M00034,M00609	R00194,R01401	RC00063,RC00318	ko00000,ko00001,ko00002,ko01000				Bacteria	2I8GZ@201174,4CYTM@85004,COG0775@1,COG0775@2	NA|NA|NA	E	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DNDENEON_00675	566552.BIFCAT_01602	5.3e-219	766.9	Bifidobacteriales	senX3	GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009405,GO:0009987,GO:0016020,GO:0016310,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044419,GO:0044464,GO:0046777,GO:0051704,GO:0071704,GO:0071944,GO:1901564	2.7.13.3	ko:K07636,ko:K07768,ko:K11383	ko02020,map02020	M00434,M00443,M00505			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	2GJY7@201174,4CZ42@85004,COG5002@1,COG5002@2	NA|NA|NA	T	His Kinase A (phosphoacceptor) domain
DNDENEON_00676	547043.BIFPSEUDO_02689	3.4e-129	467.6	Bifidobacteriales													Bacteria	2GKFS@201174,4CZTX@85004,COG0745@1,COG0745@2	NA|NA|NA	KT	Transcriptional regulatory protein, C terminal
DNDENEON_00677	566552.BIFCAT_01600	1.6e-197	695.3	Bifidobacteriales	pstS			ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	M00222			ko00000,ko00001,ko00002,ko02000	3.A.1.7			Bacteria	2GJXD@201174,4CYTZ@85004,COG0226@1,COG0226@2	NA|NA|NA	P	Part of the ABC transporter complex PstSACB involved in phosphate import
DNDENEON_00678	547043.BIFPSEUDO_02686	1.3e-163	582.4	Bifidobacteriales	pstC	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0009314,GO:0009628,GO:0010921,GO:0015698,GO:0016020,GO:0016021,GO:0019220,GO:0019222,GO:0031224,GO:0031226,GO:0031323,GO:0034220,GO:0035303,GO:0035435,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0055085,GO:0065007,GO:0065009,GO:0071944,GO:0098656,GO:0098660,GO:0098661		ko:K02037,ko:K02038	ko02010,map02010	M00222			ko00000,ko00001,ko00002,ko02000	3.A.1.7		iAF987.Gmet_2702,ic_1306.c4652	Bacteria	2GJDA@201174,4CYV0@85004,COG0573@1,COG0573@2	NA|NA|NA	P	probably responsible for the translocation of the substrate across the membrane
DNDENEON_00679	547043.BIFPSEUDO_02685	4e-168	597.4	Bifidobacteriales	pstA	GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0010921,GO:0015291,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0019220,GO:0019222,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0031323,GO:0033554,GO:0034220,GO:0035303,GO:0035435,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051716,GO:0055085,GO:0065007,GO:0065009,GO:0071944,GO:0098656,GO:0098660,GO:0098661		ko:K02037,ko:K02038	ko02010,map02010	M00222			ko00000,ko00001,ko00002,ko02000	3.A.1.7		iJN746.PP_2658,iPC815.YPO4115,iYL1228.KPN_04131,iZ_1308.Z5217	Bacteria	2I2F2@201174,4D2UW@85004,COG0581@1,COG0581@2	NA|NA|NA	P	Phosphate transport system permease
DNDENEON_00680	1435051.BMOU_1668	3.6e-148	530.8	Bifidobacteriales	pstB		3.6.3.27	ko:K02036	ko02010,map02010	M00222			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.7			Bacteria	2GJQ3@201174,4CYVE@85004,COG1117@1,COG1117@2	NA|NA|NA	P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
DNDENEON_00681	547043.BIFPSEUDO_02682	1.2e-144	519.2	Bifidobacteriales				ko:K02077		M00244			ko00000,ko00002,ko02000	3.A.1.15			Bacteria	2GM1K@201174,4CZ99@85004,COG0803@1,COG0803@2	NA|NA|NA	P	Zinc-uptake complex component A periplasmic
DNDENEON_00682	547043.BIFPSEUDO_02681	1.3e-246	858.6	Bifidobacteriales	pbuO			ko:K06901					ko00000,ko02000	2.A.1.40			Bacteria	2GKYD@201174,4CZHD@85004,COG2252@1,COG2252@2	NA|NA|NA	S	Permease family
DNDENEON_00683	401473.BDP_0394	1.1e-87	329.3	Bifidobacteriales	rplJ	GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0017148,GO:0019222,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02864,ko:K02935	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GM0V@201174,4CZFP@85004,COG0244@1,COG0244@2	NA|NA|NA	J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DNDENEON_00684	401473.BDP_0395	2.4e-36	158.3	Bifidobacteriales	rplL	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944		ko:K02935	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IKNW@201174,4D0W2@85004,COG0222@1,COG0222@2	NA|NA|NA	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
DNDENEON_00685	547043.BIFPSEUDO_02677	5.6e-176	624.0	Bifidobacteriales													Bacteria	2GIT6@201174,4CYX9@85004,COG1716@1,COG1716@2	NA|NA|NA	T	Forkhead associated domain
DNDENEON_00686	547043.BIFPSEUDO_02676	0.0	2275.0	Bifidobacteriales													Bacteria	2GKJW@201174,4CYY9@85004,COG1112@1,COG1112@2	NA|NA|NA	L	Superfamily I DNA and RNA helicases and helicase subunits
DNDENEON_00687	566552.BIFCAT_01589	4.8e-36	156.8	Bifidobacteriales													Bacteria	2B18D@1,2GSR6@201174,31TNU@2,4D1ET@85004	NA|NA|NA		
DNDENEON_00688	566552.BIFCAT_01588	1.9e-92	345.5	Bifidobacteriales	flgA	GO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0097588		ko:K02279,ko:K02386	ko02040,map02040				ko00000,ko00001,ko02035,ko02044				Bacteria	2IIYF@201174,4D0YD@85004,COG1261@1,COG1261@2	NA|NA|NA	NO	SAF
DNDENEON_00689	547043.BIFPSEUDO_02673	6.1e-30	136.0	Bifidobacteriales	fmdB												Bacteria	2IQHE@201174,4D1ES@85004,COG2331@1,COG2331@2	NA|NA|NA	S	Putative regulatory protein
DNDENEON_00690	547043.BIFPSEUDO_02672	4e-100	370.9	Bifidobacteriales	fthC		6.3.3.2	ko:K01934	ko00670,ko01100,map00670,map01100		R02301	RC00183	ko00000,ko00001,ko01000				Bacteria	2IKWR@201174,4D12B@85004,COG0212@1,COG0212@2	NA|NA|NA	H	5-formyltetrahydrofolate cyclo-ligase family
DNDENEON_00691	566552.BIFCAT_01585	2.9e-122	444.5	Bifidobacteriales	rimJ		2.3.1.128	ko:K03790					ko00000,ko01000,ko03009				Bacteria	2HAFI@201174,4CZRR@85004,COG1670@1,COG1670@2	NA|NA|NA	J	Acetyltransferase (GNAT) domain
DNDENEON_00692	547043.BIFPSEUDO_02670	1.6e-147	529.3	Bifidobacteriales													Bacteria	2E03N@1,2GQE4@201174,32VSG@2,4CYUX@85004	NA|NA|NA		
DNDENEON_00693	1680.BADO_0302	2.5e-46	191.0	Bifidobacteriales	groS	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019899,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0035375,GO:0035966,GO:0040007,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065007,GO:0071944,GO:0080090,GO:1903506,GO:2000112,GO:2001141		ko:K04078					ko00000,ko03029,ko03110				Bacteria	2IKTH@201174,4D101@85004,COG0234@1,COG0234@2	NA|NA|NA	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DNDENEON_00697	1437600.JDUI01000014_gene1019	5.5e-25	119.4	Bifidobacteriales	rpmG			ko:K02913	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GQFG@201174,4D1EA@85004,COG0267@1,COG0267@2	NA|NA|NA	J	Ribosomal protein L33
DNDENEON_00698	566552.BIFCAT_01577	7.6e-206	723.0	Bifidobacteriales	murB	GO:0000166,GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008360,GO:0008762,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0022603,GO:0022604,GO:0030203,GO:0034645,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0048037,GO:0050660,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0055114,GO:0065007,GO:0065008,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576	1.3.1.98	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100		R03191,R03192	RC02639	ko00000,ko00001,ko01000,ko01011			iECED1_1282.ECED1_4683,iECUMN_1333.ECUMN_4498_AT6,iLF82_1304.LF82_1416,iNRG857_1313.NRG857_19845	Bacteria	2GIV2@201174,4CZSJ@85004,COG0812@1,COG0812@2	NA|NA|NA	M	Cell wall formation
DNDENEON_00699	566552.BIFCAT_01576	2.1e-266	924.5	Bifidobacteriales				ko:K03294					ko00000	2.A.3.2			Bacteria	2GJ75@201174,4CYZA@85004,COG0531@1,COG0531@2	NA|NA|NA	E	aromatic amino acid transport protein AroP K03293
DNDENEON_00700	547043.BIFPSEUDO_02660	8.3e-59	232.6	Bifidobacteriales	fdxA			ko:K05524					ko00000				Bacteria	2IKVN@201174,4D11B@85004,COG1146@1,COG1146@2	NA|NA|NA	C	4Fe-4S binding domain
DNDENEON_00701	547043.BIFPSEUDO_02659	8.6e-207	726.1	Bifidobacteriales	dapC												Bacteria	2GJMI@201174,4CZ91@85004,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase class I and II
DNDENEON_00702	1147128.BAST_0233	1.1e-35	156.8	Bifidobacteriales			3.1.1.53	ko:K05970					ko00000,ko01000				Bacteria	2ICNG@201174,4CZQA@85004,COG3250@1,COG3250@2	NA|NA|NA	G	Glycosyl hydrolase family 2, sugar binding domain protein
DNDENEON_00703	566552.BIFCAT_01573	0.0	1120.5	Bifidobacteriales				ko:K02035	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GNKN@201174,4D0JU@85004,COG0747@1,COG0747@2	NA|NA|NA	E	Bacterial extracellular solute-binding proteins, family 5 Middle
DNDENEON_00704	547043.BIFPSEUDO_02657	7.7e-180	636.3	Bifidobacteriales				ko:K02033	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GM72@201174,4D009@85004,COG0601@1,COG0601@2	NA|NA|NA	EP	Binding-protein-dependent transport system inner membrane component
DNDENEON_00705	78344.BIGA_1424	3.9e-141	507.7	Bifidobacteriales				ko:K02034	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2I2WP@201174,4D2RU@85004,COG1173@1,COG1173@2	NA|NA|NA	EP	Binding-protein-dependent transport system inner membrane component
DNDENEON_00706	547043.BIFPSEUDO_02655	6.7e-156	556.6	Bifidobacteriales	oppD			ko:K02031,ko:K02032,ko:K02034	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GIXV@201174,4D0C4@85004,COG0444@1,COG0444@2	NA|NA|NA	EP	Oligopeptide/dipeptide transporter, C-terminal region
DNDENEON_00707	547043.BIFPSEUDO_02654	2.8e-151	541.2	Bifidobacteriales	dppF			ko:K02032	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2H4BW@201174,4CYW7@85004,COG4608@1,COG4608@2	NA|NA|NA	E	ABC transporter
DNDENEON_00708	547043.BIFPSEUDO_02653	0.0	1167.9	Bifidobacteriales	xynB		3.2.1.37	ko:K01198	ko00520,ko01100,map00520,map01100		R01433	RC00467	ko00000,ko00001,ko01000		GH43		Bacteria	2GIW3@201174,4CZ5I@85004,COG3507@1,COG3507@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 43 family
DNDENEON_00709	1680.BADO_0308	0.0	1434.1	Bifidobacteriales													Bacteria	2HT29@201174,4CZ28@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_00710	547043.BIFPSEUDO_02650	4.1e-233	813.5	Bifidobacteriales			3.2.1.156	ko:K15531					ko00000,ko01000		GH8		Bacteria	2IA68@201174,4CZYP@85004,COG3405@1,COG3405@2	NA|NA|NA	G	CBM9 module, glycoside hydrolase family 8 protein and carbohydrate esterase family 4 protein K01238
DNDENEON_00711	566552.BIFCAT_01563	0.0	1122.1	Bifidobacteriales													Bacteria	2GIW3@201174,4D08K@85004,COG3507@1,COG3507@2	NA|NA|NA	G	candidate polyfunctional acetylxylan esterase b-xylosidase A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238
DNDENEON_00712	566552.BIFCAT_01562	1e-292	1011.9	Bifidobacteriales				ko:K03929					ko00000,ko01000		CE10		Bacteria	2GJCN@201174,4D02Y@85004,COG2272@1,COG2272@2	NA|NA|NA	I	Belongs to the type-B carboxylesterase lipase family
DNDENEON_00714	547043.BIFPSEUDO_02645	4.4e-223	780.4	Bifidobacteriales	dinB		2.7.7.7	ko:K02346					ko00000,ko01000,ko03400				Bacteria	2GKBI@201174,4CZHT@85004,COG0389@1,COG0389@2	NA|NA|NA	L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DNDENEON_00715	547043.BIFPSEUDO_02644	5.2e-251	873.2	Bifidobacteriales				ko:K07282					ko00000				Bacteria	2GK15@201174,4D081@85004,COG2843@1,COG2843@2	NA|NA|NA	M	Bacterial capsule synthesis protein PGA_cap
DNDENEON_00716	547043.BIFPSEUDO_02643	3.9e-184	650.6	Bifidobacteriales	MA20_16500		1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GKTT@201174,4CZRS@85004,COG0111@1,COG0111@2	NA|NA|NA	EH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DNDENEON_00717	547043.BIFPSEUDO_02642	2.1e-114	418.3	Bifidobacteriales	yigZ		2.1.1.45,3.4.13.9	ko:K00560,ko:K01271	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	M00053	R02101	RC00219,RC00332	ko00000,ko00001,ko00002,ko01000,ko01002				Bacteria	2GMM4@201174,4CZH8@85004,COG1739@1,COG1739@2	NA|NA|NA	S	Uncharacterized protein family UPF0029
DNDENEON_00718	547043.BIFPSEUDO_02641	6.9e-122	443.4	Bifidobacteriales													Bacteria	2BMRI@1,2GMIA@201174,32GAY@2,4CZFZ@85004	NA|NA|NA		
DNDENEON_00719	547043.BIFPSEUDO_02640	0.0	1467.2	Bifidobacteriales	malQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	2.4.1.18,2.4.1.25,3.2.1.196,5.4.99.15	ko:K00700,ko:K00705,ko:K02438,ko:K06044	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R01824,R02110,R02111,R05196,R09995	RC00049	ko00000,ko00001,ko00002,ko01000,ko04147		CBM48,GH13,GH77	iJN678.malQ	Bacteria	2GM5Z@201174,4CZC7@85004,COG1640@1,COG1640@2	NA|NA|NA	G	4-alpha-glucanotransferase
DNDENEON_00720	547043.BIFPSEUDO_02639	2.4e-80	304.7	Bifidobacteriales	rplM	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070180,GO:0071704,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02871	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IFG1@201174,4D0PV@85004,COG0102@1,COG0102@2	NA|NA|NA	J	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DNDENEON_00721	547043.BIFPSEUDO_02638	3.4e-67	261.2	Bifidobacteriales	rpsI	GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02996	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GNDY@201174,4CZ9Y@85004,COG0103@1,COG0103@2	NA|NA|NA	J	Belongs to the universal ribosomal protein uS9 family
DNDENEON_00722	547043.BIFPSEUDO_02637	0.0	1712.2	Bifidobacteriales	glgX		3.2.1.196,3.2.1.68	ko:K01214,ko:K02438	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02111,R09995,R11261		ko00000,ko00001,ko00002,ko01000		CBM48,GH13		Bacteria	2GJ00@201174,4CYZ1@85004,COG1523@1,COG1523@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 13 family
DNDENEON_00723	547043.BIFPSEUDO_02635	1.4e-76	292.0	Bifidobacteriales			4.4.1.5	ko:K01759	ko00620,map00620		R02530	RC00004,RC00740	ko00000,ko00001,ko01000				Bacteria	2IHBC@201174,4D0P3@85004,COG0346@1,COG0346@2	NA|NA|NA	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
DNDENEON_00724	547043.BIFPSEUDO_02634	2e-216	758.1	Bifidobacteriales			2.7.1.2	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R01600,R01786	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2I7R8@201174,4CZZ7@85004,COG1940@1,COG1940@2	NA|NA|NA	GK	transcriptional repressor of nag (N-acetylglucosamine) operon K02565
DNDENEON_00725	547043.BIFPSEUDO_02633	4.2e-239	833.6	Bifidobacteriales												iYL1228.KPN_02541	Bacteria	2GPRH@201174,4D048@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00726	547043.BIFPSEUDO_02632	9.5e-197	692.6	Bifidobacteriales	Z012_01000		1.1.1.14,1.1.1.9	ko:K00008,ko:K05351	ko00040,ko00051,ko01100,map00040,map00051,map01100	M00014	R00875,R01896	RC00085,RC00102	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKC7@201174,4D04X@85004,COG1063@1,COG1063@2	NA|NA|NA	C	Zinc-binding dehydrogenase
DNDENEON_00727	547043.BIFPSEUDO_02631	1.6e-182	645.2	Bifidobacteriales	rhaR_1												Bacteria	2HZE7@201174,4D00U@85004,COG2207@1,COG2207@2	NA|NA|NA	K	helix_turn_helix, arabinose operon control protein
DNDENEON_00728	547043.BIFPSEUDO_02630	0.0	1802.3	Bifidobacteriales	adhE		1.1.1.1,1.2.1.10	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220		R00228,R00623,R00754,R01172,R04880,R05233,R05234,R06917,R06927	RC00004,RC00050,RC00088,RC00099,RC00116,RC00184,RC00649,RC01195	ko00000,ko00001,ko01000			iSB619.SA_RS00885	Bacteria	2GJI2@201174,4CZ8F@85004,COG1012@1,COG1012@2,COG1454@1,COG1454@2	NA|NA|NA	C	belongs to the iron- containing alcohol dehydrogenase family
DNDENEON_00729	1435051.BMOU_1705	5.2e-50	203.4	Bifidobacteriales	rpsJ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02946	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHRA@201174,4D0UT@85004,COG0051@1,COG0051@2	NA|NA|NA	J	Involved in the binding of tRNA to the ribosomes
DNDENEON_00730	547043.BIFPSEUDO_02627	2.3e-116	424.9	Bifidobacteriales	rplC	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015934,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031325,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090069,GO:0090070,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000232,GO:2000234		ko:K02906	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GJXT@201174,4CYQD@85004,COG0087@1,COG0087@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DNDENEON_00731	547043.BIFPSEUDO_02626	1.4e-116	425.6	Bifidobacteriales	rplD	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02926	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GJYJ@201174,4CZSA@85004,COG0088@1,COG0088@2	NA|NA|NA	J	Forms part of the polypeptide exit tunnel
DNDENEON_00732	1435051.BMOU_1708	6.8e-47	193.0	Bifidobacteriales	rplW	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02892	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQ7V@201174,4D11N@85004,COG0089@1,COG0089@2	NA|NA|NA	J	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
DNDENEON_00733	547043.BIFPSEUDO_02624	6.1e-154	550.1	Bifidobacteriales	rplB	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02886	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GK7R@201174,4CZ5U@85004,COG0090@1,COG0090@2	NA|NA|NA	J	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DNDENEON_00734	1435051.BMOU_1710	1.3e-47	195.3	Bifidobacteriales	rpsS	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02965	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IKMS@201174,4D105@85004,COG0185@1,COG0185@2	NA|NA|NA	J	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DNDENEON_00735	1680.BADO_0333	1.9e-56	224.9	Bifidobacteriales	rplV	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02890	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IM3J@201174,4D0UZ@85004,COG0091@1,COG0091@2	NA|NA|NA	J	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DNDENEON_00736	401473.BDP_0437	1e-97	363.2	Bifidobacteriales	rpsC	GO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02982	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GKF1@201174,4CYQN@85004,COG0092@1,COG0092@2	NA|NA|NA	J	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DNDENEON_00737	1680.BADO_0335	1.7e-75	288.5	Bifidobacteriales	rplP	GO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02878	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IFEI@201174,4D0Q8@85004,COG0197@1,COG0197@2	NA|NA|NA	J	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DNDENEON_00738	547043.BIFPSEUDO_02619	5e-38	163.3	Bifidobacteriales	rpmC	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02904	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQ6V@201174,4D181@85004,COG0255@1,COG0255@2	NA|NA|NA	J	Belongs to the universal ribosomal protein uL29 family
DNDENEON_00739	78346.BRUM_0723	4.9e-41	173.3	Bifidobacteriales	rpsQ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02961	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQ68@201174,4D10N@85004,COG0186@1,COG0186@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DNDENEON_00740	1437600.JDUI01000009_gene353	3e-60	237.7	Bifidobacteriales	rplN	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02874	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHNX@201174,4D0VI@85004,COG0093@1,COG0093@2	NA|NA|NA	J	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DNDENEON_00741	1680.BADO_0339	8.7e-51	206.1	Bifidobacteriales	rplX	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02895	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IKP2@201174,4D10I@85004,COG0198@1,COG0198@2	NA|NA|NA	J	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DNDENEON_00742	547043.BIFPSEUDO_02615	7.5e-103	379.8	Bifidobacteriales	rplE	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02931	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GJW7@201174,4CZCA@85004,COG0094@1,COG0094@2	NA|NA|NA	J	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DNDENEON_00743	1435051.BMOU_1719	2.5e-15	87.4	Bifidobacteriales	rpsN	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02954	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQ8R@201174,4D177@85004,COG0199@1,COG0199@2	NA|NA|NA	J	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DNDENEON_00744	1435051.BMOU_1720	5.5e-68	263.5	Bifidobacteriales	rpsH	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008150,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904		ko:K02994	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHQZ@201174,4D0P6@85004,COG0096@1,COG0096@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DNDENEON_00745	547043.BIFPSEUDO_02612	3.8e-96	357.5	Bifidobacteriales	rplF	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02933	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GK35@201174,4CYQV@85004,COG0097@1,COG0097@2	NA|NA|NA	J	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DNDENEON_00746	547043.BIFPSEUDO_02611	3.3e-59	234.2	Bifidobacteriales	rplR	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02881	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IKTX@201174,4D0WE@85004,COG0256@1,COG0256@2	NA|NA|NA	J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DNDENEON_00747	547043.BIFPSEUDO_02610	1.2e-92	346.3	Bifidobacteriales	rpsE	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904		ko:K02988	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GJW8@201174,4CZCD@85004,COG0098@1,COG0098@2	NA|NA|NA	J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DNDENEON_00748	547043.BIFPSEUDO_02609	3.4e-25	120.2	Bifidobacteriales	rpmD	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02907	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GQV0@201174,4D1EZ@85004,COG1841@1,COG1841@2	NA|NA|NA	J	Ribosomal protein L30p/L7e
DNDENEON_00749	547043.BIFPSEUDO_02608	9.8e-74	282.7	Bifidobacteriales	rplO	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02876	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2II6M@201174,4D0R9@85004,COG0200@1,COG0200@2	NA|NA|NA	J	binds to the 23S rRNA
DNDENEON_00750	547043.BIFPSEUDO_02607	3.8e-238	830.5	Bifidobacteriales	secY	GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944		ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5			Bacteria	2GJ26@201174,4CYWU@85004,COG0201@1,COG0201@2	NA|NA|NA	U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
DNDENEON_00751	547043.BIFPSEUDO_02606	5.5e-98	363.6	Bifidobacteriales	adk		2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GJ7T@201174,4CZ7Z@85004,COG0563@1,COG0563@2	NA|NA|NA	F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
DNDENEON_00752	1435051.BMOU_1728	1.6e-32	144.8	Bifidobacteriales	infA	GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0009986,GO:0016020,GO:0030246,GO:0030247,GO:0030312,GO:0040007,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071944,GO:2001065		ko:K02518					ko00000,ko03012				Bacteria	2IQ4B@201174,4D16H@85004,COG0361@1,COG0361@2	NA|NA|NA	J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DNDENEON_00753	158787.BSCA_1163	8.4e-14	81.6	Bifidobacteriales	rpmJ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02919	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GWMH@201174,4D1NT@85004,COG0257@1,COG0257@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL36 family
DNDENEON_00754	1435051.BMOU_1730	3.3e-62	244.2	Bifidobacteriales	rpsM	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02952	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHPN@201174,4D0PQ@85004,COG0099@1,COG0099@2	NA|NA|NA	J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DNDENEON_00755	1680.BADO_0353	1.9e-65	255.0	Bifidobacteriales	rpsK	GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02948	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IFFC@201174,4D0PJ@85004,COG0100@1,COG0100@2	NA|NA|NA	J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DNDENEON_00756	547043.BIFPSEUDO_02601	4.7e-185	653.7	Bifidobacteriales	rpoA	GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576	2.7.7.6	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	2GJJ5@201174,4CZEN@85004,COG0202@1,COG0202@2	NA|NA|NA	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DNDENEON_00757	1435051.BMOU_1733	1.3e-66	259.2	Bifidobacteriales	rplQ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0015934,GO:0016020,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071944,GO:1990904		ko:K02879	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHV2@201174,4D0PZ@85004,COG0203@1,COG0203@2	NA|NA|NA	J	Ribosomal protein L17
DNDENEON_00758	547043.BIFPSEUDO_02599	1.8e-184	651.7	Bifidobacteriales	truA	GO:0000049,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0030312,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363	5.4.99.12	ko:K06173					ko00000,ko01000,ko03016				Bacteria	2GJ6C@201174,4CZ8H@85004,COG0101@1,COG0101@2	NA|NA|NA	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
DNDENEON_00760	547043.BIFPSEUDO_02594	4.4e-78	297.7	Bifidobacteriales													Bacteria	2B54U@1,2HXKT@201174,31XYD@2,4D0IH@85004	NA|NA|NA		
DNDENEON_00761	547043.BIFPSEUDO_02593	6.1e-191	673.3	Bifidobacteriales	nusA			ko:K02600					ko00000,ko03009,ko03021				Bacteria	2GJDJ@201174,4CYTW@85004,COG0195@1,COG0195@2	NA|NA|NA	K	Participates in both transcription termination and antitermination
DNDENEON_00762	1435051.BMOU_1739	0.0	1221.1	Bifidobacteriales	infB			ko:K02519					ko00000,ko03012,ko03029				Bacteria	2GKPH@201174,4CZ4B@85004,COG0532@1,COG0532@2	NA|NA|NA	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DNDENEON_00763	547043.BIFPSEUDO_02589	2.2e-69	268.5	Bifidobacteriales	rbfA			ko:K02834					ko00000,ko03009				Bacteria	2IKXP@201174,4CZZZ@85004,COG0858@1,COG0858@2	NA|NA|NA	J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DNDENEON_00764	566552.BIFCAT_01504	2.5e-187	661.4	Bifidobacteriales	truB	GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1990481	5.4.99.25	ko:K03177					ko00000,ko01000,ko03016				Bacteria	2GJZK@201174,4CZED@85004,COG0130@1,COG0130@2	NA|NA|NA	J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DNDENEON_00765	547043.BIFPSEUDO_02587	1.8e-218	765.0	Bifidobacteriales	ribF	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008531,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009156,GO:0009161,GO:0009165,GO:0009231,GO:0009259,GO:0009260,GO:0009398,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0034654,GO:0042364,GO:0042726,GO:0042727,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046444,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKQF@201174,4CYXT@85004,COG0196@1,COG0196@2	NA|NA|NA	H	riboflavin kinase
DNDENEON_00766	566552.BIFCAT_01502	4.1e-251	873.6	Bifidobacteriales	radA	GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363		ko:K04485					ko00000,ko03400				Bacteria	2GMQ0@201174,4CZE1@85004,COG1066@1,COG1066@2	NA|NA|NA	O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DNDENEON_00767	547043.BIFPSEUDO_02585	3.8e-108	397.5	Bifidobacteriales													Bacteria	2EHBK@1,2ICD4@201174,33B3F@2,4CZY5@85004	NA|NA|NA		
DNDENEON_00769	547043.BIFPSEUDO_02583	2.4e-127	461.5	Bifidobacteriales	rpiA	GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564	2.7.1.12,5.3.1.6	ko:K00851,ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167,M00580	R01056,R01737	RC00002,RC00017,RC00434	ko00000,ko00001,ko00002,ko01000				Bacteria	2GMHW@201174,4CZDH@85004,COG0120@1,COG0120@2	NA|NA|NA	G	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DNDENEON_00770	547043.BIFPSEUDO_02582	5.1e-213	746.9	Bifidobacteriales	rnhA	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576	3.1.26.4	ko:K03469	ko03030,map03030				ko00000,ko00001,ko01000,ko03032				Bacteria	2GK53@201174,4CZGC@85004,COG0328@1,COG0328@2	NA|NA|NA	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DNDENEON_00771	547043.BIFPSEUDO_02581	7.4e-250	869.4	Bifidobacteriales													Bacteria	2IBRI@201174,4D07Q@85004,COG3290@1,COG3290@2	NA|NA|NA	T	GHKL domain
DNDENEON_00772	547043.BIFPSEUDO_02580	2.8e-151	541.2	Bifidobacteriales													Bacteria	2HY65@201174,4D0IP@85004,COG3279@1,COG3279@2	NA|NA|NA	T	LytTr DNA-binding domain
DNDENEON_00773	547043.BIFPSEUDO_02579	0.0	1139.8	Bifidobacteriales	pgm	GO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019318,GO:0019320,GO:0019388,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0055114,GO:0071704,GO:1901575,GO:1901576	5.4.2.2	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	M00549	R00959,R01057,R08639	RC00408	ko00000,ko00001,ko00002,ko01000			iAPECO1_1312.APECO1_1376,iECED1_1282.ECED1_0670,iECNA114_1301.ECNA114_0627,iECOK1_1307.ECOK1_0699,iECP_1309.ECP_0709,iECS88_1305.ECS88_0725,iJN678.pgm,iLF82_1304.LF82_1632,iNRG857_1313.NRG857_03110,iUMN146_1321.UM146_14115,iYL1228.KPN_00711	Bacteria	2H1PI@201174,4CZ7X@85004,COG0033@1,COG0033@2	NA|NA|NA	G	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
DNDENEON_00774	547043.BIFPSEUDO_02578	0.0	1254.6	Bifidobacteriales	crr	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006109,GO:0006793,GO:0006796,GO:0006810,GO:0008150,GO:0008152,GO:0008643,GO:0009401,GO:0009892,GO:0009898,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019222,GO:0019897,GO:0019898,GO:0031234,GO:0044237,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045912,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0065007,GO:0071702,GO:0071944,GO:0080090,GO:0098552,GO:0098562		ko:K02755,ko:K02756,ko:K02757,ko:K02777	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	M00265,M00266,M00268,M00270,M00271,M00272,M00303,M00806	R02738,R02780,R04111,R04394,R05132,R08559	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.1.1.1,4.A.1.2.11,4.A.1.2.2,4.A.1.2.5,4.A.1.2.6		e_coli_core.b2417,iAF1260.b2417,iAPECO1_1312.APECO1_4128,iB21_1397.B21_02278,iBWG_1329.BWG_2179,iE2348C_1286.E2348C_2603,iEC042_1314.EC042_2626,iEC55989_1330.EC55989_2707,iECABU_c1320.ECABU_c27380,iECBD_1354.ECBD_1264,iECB_1328.ECB_02317,iECDH10B_1368.ECDH10B_2582,iECDH1ME8569_1439.ECDH1ME8569_2351,iECD_1391.ECD_02317,iECED1_1282.ECED1_2861,iECH74115_1262.ECH74115_3648,iECIAI1_1343.ECIAI1_2475,iECIAI39_1322.ECIAI39_2563,iECNA114_1301.ECNA114_2494,iECO103_1326.ECO103_2936,iECO111_1330.ECO111_3147,iECO26_1355.ECO26_3470,iECOK1_1307.ECOK1_2734,iECS88_1305.ECS88_2607,iECSE_1348.ECSE_2708,iECSF_1327.ECSF_2281,iECSP_1301.ECSP_3365,iECUMN_1333.ECUMN_2739,iECW_1372.ECW_m2646,iEKO11_1354.EKO11_1311,iETEC_1333.ETEC_2530,iEcDH1_1363.EcDH1_1244,iEcE24377_1341.EcE24377A_2704,iEcHS_1320.EcHS_A2552,iEcSMS35_1347.EcSMS35_2572,iEcolC_1368.EcolC_1261,iG2583_1286.G2583_2949,iJO1366.b2417,iJR904.b2417,iLF82_1304.LF82_0357,iNRG857_1313.NRG857_12120,iSFV_1184.SFV_2469,iSF_1195.SF2472,iSFxv_1172.SFxv_2721,iSSON_1240.SSON_2506,iS_1188.S2618,iUMN146_1321.UM146_04535,iUMNK88_1353.UMNK88_3019,iUTI89_1310.UTI89_C2751,iWFL_1372.ECW_m2646,iY75_1357.Y75_RS12665,ic_1306.c2952	Bacteria	2GK6B@201174,4CZR7@85004,COG1263@1,COG1263@2,COG1264@1,COG1264@2,COG2190@1,COG2190@2	NA|NA|NA	G	pts system, glucose-specific IIABC component
DNDENEON_00775	547043.BIFPSEUDO_02577	2.8e-157	561.2	Bifidobacteriales	arbG			ko:K02538,ko:K03488					ko00000,ko03000				Bacteria	2I8K8@201174,4D08T@85004,COG3711@1,COG3711@2	NA|NA|NA	K	CAT RNA binding domain
DNDENEON_00776	547043.BIFPSEUDO_02576	8.3e-199	699.5	Bifidobacteriales													Bacteria	2GJ3K@201174,4CYTC@85004,COG1597@1,COG1597@2	NA|NA|NA	I	Diacylglycerol kinase catalytic domain
DNDENEON_00777	547043.BIFPSEUDO_02575	9.2e-242	842.4	Bifidobacteriales	serS	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	6.1.1.11	ko:K01875	ko00970,map00970	M00359,M00360	R03662,R08218	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GIWP@201174,4CZ40@85004,COG0172@1,COG0172@2	NA|NA|NA	J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DNDENEON_00779	547043.BIFPSEUDO_02573	4.6e-188	663.7	Bifidobacteriales	yegU												Bacteria	2HZ96@201174,4CZ01@85004,COG1397@1,COG1397@2	NA|NA|NA	O	ADP-ribosylglycohydrolase
DNDENEON_00780	547043.BIFPSEUDO_02572	1.9e-189	668.3	Bifidobacteriales	yegV	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019200,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704											Bacteria	2IA3T@201174,4CYSM@85004,COG0524@1,COG0524@2	NA|NA|NA	G	pfkB family carbohydrate kinase
DNDENEON_00781	547043.BIFPSEUDO_02571	2.4e-270	937.6	Bifidobacteriales				ko:K03457					ko00000	2.A.39			Bacteria	2GJ6B@201174,4CZT2@85004,COG1457@1,COG1457@2	NA|NA|NA	U	Permease for cytosine/purines, uracil, thiamine, allantoin
DNDENEON_00782	547043.BIFPSEUDO_02570	1.5e-103	382.1	Bifidobacteriales													Bacteria	2IN6N@201174,4D092@85004,COG1335@1,COG1335@2	NA|NA|NA	Q	Isochorismatase family
DNDENEON_00783	547043.BIFPSEUDO_02569	2.3e-214	751.1	Bifidobacteriales													Bacteria	2GXZI@201174,4D06C@85004,COG2334@1,COG2334@2	NA|NA|NA	S	Choline/ethanolamine kinase
DNDENEON_00784	547043.BIFPSEUDO_02568	2.5e-275	954.1	Bifidobacteriales	eat			ko:K16238					ko00000,ko02000	2.A.3.5			Bacteria	2GM7U@201174,4CZPA@85004,COG0833@1,COG0833@2	NA|NA|NA	E	Amino acid permease
DNDENEON_00785	547043.BIFPSEUDO_02567	5.3e-264	916.4	Bifidobacteriales	gabT		2.6.1.19,2.6.1.22	ko:K00823,ko:K07250	ko00250,ko00280,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00280,map00410,map00640,map00650,map01100,map01120	M00027	R00908,R01648,R04188	RC00006,RC00062,RC00160	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	2GKVH@201174,4CZ7K@85004,COG0160@1,COG0160@2	NA|NA|NA	H	Aminotransferase class-III
DNDENEON_00786	547043.BIFPSEUDO_02566	5.6e-141	506.9	Bifidobacteriales	yidP			ko:K03710					ko00000,ko03000				Bacteria	2GJZ1@201174,4CZ6A@85004,COG2188@1,COG2188@2	NA|NA|NA	K	UTRA
DNDENEON_00787	547043.BIFPSEUDO_02565	5.6e-121	440.3	Bifidobacteriales	degU			ko:K07684	ko02020,map02020	M00471			ko00000,ko00001,ko00002,ko02022				Bacteria	2GIVA@201174,4CZW8@85004,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
DNDENEON_00788	547043.BIFPSEUDO_02564	1.8e-271	941.4	Bifidobacteriales	tcsS3												Bacteria	2GJ4J@201174,4CZ2U@85004,COG1983@1,COG1983@2,COG4585@1,COG4585@2	NA|NA|NA	KT	PspC domain
DNDENEON_00789	547043.BIFPSEUDO_02562	3.4e-147	528.9	Bifidobacteriales	pspC												Bacteria	2GIVS@201174,4CZZT@85004,COG1983@1,COG1983@2	NA|NA|NA	KT	PspC domain
DNDENEON_00790	566552.BIFCAT_01283	2.7e-92	344.7	Bifidobacteriales													Bacteria	2B2B3@1,2GUI3@201174,31UV6@2,4D1IV@85004	NA|NA|NA		
DNDENEON_00791	566552.BIFCAT_01285	4.4e-115	420.6	Bifidobacteriales													Bacteria	2DM2Z@1,2GKMX@201174,31HGC@2,4CZJ9@85004	NA|NA|NA	S	Protein of unknown function (DUF4125)
DNDENEON_00792	547043.BIFPSEUDO_02559	0.0	1295.4	Bifidobacteriales													Bacteria	2I7P1@201174,4CZTS@85004,COG0457@1,COG0457@2	NA|NA|NA	S	Domain of unknown function (DUF4037)
DNDENEON_00793	547043.BIFPSEUDO_02558	2.6e-214	751.1	Bifidobacteriales	araJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K08156,ko:K19577					ko00000,ko02000	2.A.1.2.14,2.A.1.2.65			Bacteria	2GK8C@201174,4CZ46@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00795	547043.BIFPSEUDO_02556	0.0	1084.7	Bifidobacteriales	lysS	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006430,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576	6.1.1.6	ko:K04567	ko00970,map00970	M00359,M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016			iAF1260.b4129,iECDH1ME8569_1439.ECDH1ME8569_3989,iECW_1372.ECW_m4490,iEcDH1_1363.EcDH1_3862,iJN678.lysS,iJO1366.b4129,iWFL_1372.ECW_m4490	Bacteria	2GKE0@201174,4CZHM@85004,COG1190@1,COG1190@2	NA|NA|NA	J	Belongs to the class-II aminoacyl-tRNA synthetase family
DNDENEON_00796	547043.BIFPSEUDO_02555	1.1e-192	679.1	Bifidobacteriales				ko:K02529,ko:K17640					ko00000,ko03000				Bacteria	2GJRG@201174,4D078@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00797	547043.BIFPSEUDO_02553	8.8e-251	872.5	Bifidobacteriales				ko:K03292,ko:K16209					ko00000,ko02000	2.A.2,2.A.2.2			Bacteria	2HD4Y@201174,4CZRA@85004,COG2211@1,COG2211@2	NA|NA|NA	G	Psort location CytoplasmicMembrane, score 10.00
DNDENEON_00798	1435051.BMOU_1791	4.1e-99	367.9	Bifidobacteriales				ko:K06889					ko00000				Bacteria	2HW4C@201174,4D04D@85004,COG1073@1,COG1073@2	NA|NA|NA	S	Serine aminopeptidase, S33
DNDENEON_00799	547043.BIFPSEUDO_02549	2.5e-206	724.5	Bifidobacteriales	menA	GO:0000287,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009233,GO:0009234,GO:0009987,GO:0016020,GO:0016740,GO:0016765,GO:0032194,GO:0042180,GO:0042181,GO:0042362,GO:0042371,GO:0042373,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046428,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901576,GO:1901661,GO:1901663	2.5.1.74	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116	R05617,R06858,R10757	RC02935,RC02936,RC03264	ko00000,ko00001,ko00002,ko01000,ko01006			iECH74115_1262.ECH74115_5387,iG2583_1286.G2583_4737	Bacteria	2GJBS@201174,4CZHQ@85004,COG1575@1,COG1575@2	NA|NA|NA	H	Belongs to the MenA family. Type 1 subfamily
DNDENEON_00800	547043.BIFPSEUDO_02933	4.3e-132	477.2	Bifidobacteriales	plsC2		2.3.1.51	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R02241,R09381	RC00004,RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01004				Bacteria	2GJ6V@201174,4CZBB@85004,COG0204@1,COG0204@2	NA|NA|NA	I	Phosphate acyltransferases
DNDENEON_00801	547043.BIFPSEUDO_02934	1.3e-97	362.5	Bifidobacteriales													Bacteria	2AP35@1,2IBUY@201174,31E4N@2,4D0R7@85004	NA|NA|NA		
DNDENEON_00802	547043.BIFPSEUDO_02936	3.4e-194	684.1	Bifidobacteriales	trpD	GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.4.2.18,4.1.3.27	ko:K00766,ko:K13497	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R00985,R00986,R01073	RC00010,RC00440,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000				Bacteria	2GM4G@201174,4CZKZ@85004,COG0547@1,COG0547@2	NA|NA|NA	F	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DNDENEON_00803	547043.BIFPSEUDO_02937	0.0	1885.9	Bifidobacteriales	secA	GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030312,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680		ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4			Bacteria	2GIRT@201174,4CYX6@85004,COG0653@1,COG0653@2	NA|NA|NA	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
DNDENEON_00804	547043.BIFPSEUDO_02938	3.3e-118	431.0	Bifidobacteriales	hpf	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113		ko:K05808					ko00000,ko03009				Bacteria	2GMYF@201174,4CZ3H@85004,COG1544@1,COG1544@2	NA|NA|NA	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DNDENEON_00805	547043.BIFPSEUDO_02940	1.7e-122	445.3	Bifidobacteriales	recX	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03565					ko00000,ko03400				Bacteria	2INKM@201174,4D0Y4@85004,COG2137@1,COG2137@2	NA|NA|NA	S	Modulates RecA activity
DNDENEON_00806	547043.BIFPSEUDO_02941	5.4e-212	743.4	Bifidobacteriales	recA	GO:0000150,GO:0000166,GO:0000287,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009432,GO:0009605,GO:0009628,GO:0009650,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030145,GO:0030554,GO:0031668,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042148,GO:0042221,GO:0042623,GO:0043142,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363		ko:K03553	ko03440,map03440	M00729			ko00000,ko00001,ko00002,ko03400				Bacteria	2GJ4P@201174,4CYYY@85004,COG0468@1,COG0468@2	NA|NA|NA	L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DNDENEON_00807	547043.BIFPSEUDO_02942	4.3e-46	190.3	Bifidobacteriales													Bacteria	2EFU9@1,2GQJW@201174,339KE@2,4D16T@85004	NA|NA|NA	S	Protein of unknown function (DUF3046)
DNDENEON_00808	547043.BIFPSEUDO_02943	1.6e-80	305.4	Bifidobacteriales													Bacteria	2I2G5@201174,4D0PT@85004,COG1426@1,COG1426@2	NA|NA|NA	K	Helix-turn-helix XRE-family like proteins
DNDENEON_00809	547043.BIFPSEUDO_02944	5.5e-98	363.6	Bifidobacteriales	cinA		3.5.1.42	ko:K03742,ko:K03743	ko00760,map00760		R02322	RC00100	ko00000,ko00001,ko01000				Bacteria	2IQ8T@201174,4D0CM@85004,COG1546@1,COG1546@2	NA|NA|NA	S	Belongs to the CinA family
DNDENEON_00810	547043.BIFPSEUDO_02945	4.1e-124	450.7	Bifidobacteriales	pgsA	GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576	2.7.8.41,2.7.8.5	ko:K00995,ko:K08744	ko00564,ko01100,map00564,map01100		R01801,R02030	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000				Bacteria	2GK5D@201174,4CZ36@85004,COG0558@1,COG0558@2	NA|NA|NA	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DNDENEON_00811	547043.BIFPSEUDO_02946	0.0	1800.4	Bifidobacteriales	ftsK	GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944		ko:K03466					ko00000,ko03036	3.A.12			Bacteria	2GK3T@201174,4CZ5T@85004,COG1674@1,COG1674@2	NA|NA|NA	D	FtsK SpoIIIE family protein
DNDENEON_00812	547043.BIFPSEUDO_02947	1.9e-192	678.3	Bifidobacteriales	miaA	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0008033,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009451,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016740,GO:0016765,GO:0019222,GO:0031323,GO:0031326,GO:0032268,GO:0033554,GO:0034248,GO:0034470,GO:0034605,GO:0034641,GO:0034660,GO:0040007,GO:0043170,GO:0043412,GO:0043555,GO:0044237,GO:0044238,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051716,GO:0052381,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1990497,GO:2000112,GO:2000765	2.5.1.75	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110		R01122	RC02820	ko00000,ko00001,ko01000,ko01006,ko03016				Bacteria	2GKFT@201174,4CZNS@85004,COG0324@1,COG0324@2	NA|NA|NA	F	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DNDENEON_00813	547043.BIFPSEUDO_02948	1e-281	975.3	Bifidobacteriales	miaB		2.8.4.3	ko:K06168			R10645,R10646,R10647	RC00003,RC00980,RC03221,RC03222	ko00000,ko01000,ko03016				Bacteria	2GJEV@201174,4CZFB@85004,COG0621@1,COG0621@2	NA|NA|NA	H	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DNDENEON_00814	547043.BIFPSEUDO_02949	4.2e-155	553.9	Bifidobacteriales	relA2		2.7.6.5	ko:K07816	ko00230,map00230		R00429	RC00002,RC00078	ko00000,ko00001,ko01000				Bacteria	2GKF8@201174,4CYXP@85004,COG2357@1,COG2357@2	NA|NA|NA	S	Region found in RelA / SpoT proteins
DNDENEON_00815	547043.BIFPSEUDO_02950	8e-177	626.3	Bifidobacteriales	ydeD												Bacteria	2I8X5@201174,4D0BH@85004,COG0697@1,COG0697@2	NA|NA|NA	EG	EamA-like transporter family
DNDENEON_00816	547043.BIFPSEUDO_02951	1.7e-127	462.2	Bifidobacteriales	ybhL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K06890					ko00000				Bacteria	2I98Y@201174,4CZIJ@85004,COG0670@1,COG0670@2	NA|NA|NA	S	Belongs to the BI1 family
DNDENEON_00817	547043.BIFPSEUDO_02952	6.7e-60	237.7	Bifidobacteriales													Bacteria	2EGCD@1,2HZ8E@201174,33A46@2,4CYRF@85004	NA|NA|NA	S	Domain of unknown function (DUF5067)
DNDENEON_00818	547043.BIFPSEUDO_02953	5.1e-243	846.7	Bifidobacteriales													Bacteria	2GNBG@201174,4CZG6@85004,COG4585@1,COG4585@2	NA|NA|NA	T	Histidine kinase
DNDENEON_00819	547043.BIFPSEUDO_02954	1.8e-127	461.8	Bifidobacteriales													Bacteria	2GN80@201174,4CZRF@85004,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
DNDENEON_00820	547043.BIFPSEUDO_02955	0.0	1385.2	Bifidobacteriales													Bacteria	2I99F@201174,4CZ4G@85004,COG1479@1,COG1479@2	NA|NA|NA	S	Protein of unknown function DUF262
DNDENEON_00821	547043.BIFPSEUDO_02956	5.8e-115	420.2	Bifidobacteriales													Bacteria	2IBZ9@201174,4D07J@85004,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
DNDENEON_00822	547043.BIFPSEUDO_02957	7.2e-245	852.8	Bifidobacteriales													Bacteria	2I9G4@201174,4CZHY@85004,COG4585@1,COG4585@2	NA|NA|NA	T	Histidine kinase
DNDENEON_00823	547043.BIFPSEUDO_02958	2.9e-190	671.0	Bifidobacteriales				ko:K01990		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GIY8@201174,4CYUQ@85004,COG1131@1,COG1131@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
DNDENEON_00824	547043.BIFPSEUDO_02959	2.9e-224	784.3	Bifidobacteriales				ko:K01992		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	2IBJP@201174,4CZD5@85004,COG0842@1,COG0842@2	NA|NA|NA	V	ABC-2 family transporter protein
DNDENEON_00825	547043.BIFPSEUDO_02960	8.9e-229	799.3	Bifidobacteriales				ko:K01992		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	2H9HW@201174,4CZ1J@85004,COG0842@1,COG0842@2	NA|NA|NA	V	ABC-2 family transporter protein
DNDENEON_00826	547043.BIFPSEUDO_02961	2.2e-209	734.6	Bifidobacteriales	rhaR1			ko:K11312					ko00000				Bacteria	2I2G7@201174,4D06R@85004,COG1917@1,COG1917@2,COG2207@1,COG2207@2	NA|NA|NA	K	helix_turn_helix, arabinose operon control protein
DNDENEON_00827	547043.BIFPSEUDO_02962	5.2e-108	397.1	Bifidobacteriales	maa		2.3.1.18,2.3.1.79	ko:K00633,ko:K00661					ko00000,ko01000				Bacteria	2GNUB@201174,4CZ5K@85004,COG0110@1,COG0110@2	NA|NA|NA	S	Bacterial transferase hexapeptide repeat protein
DNDENEON_00828	547043.BIFPSEUDO_02963	9.9e-250	869.0	Bifidobacteriales	VP1224												Bacteria	2HZA6@201174,4CZ8I@85004,COG0534@1,COG0534@2	NA|NA|NA	V	Psort location CytoplasmicMembrane, score 9.99
DNDENEON_00829	547043.BIFPSEUDO_02964	0.0	1803.1	Bifidobacteriales	acnA	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0015980,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0030312,GO:0030350,GO:0032787,GO:0040007,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046459,GO:0046872,GO:0046914,GO:0047456,GO:0048037,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:1901363	4.2.1.3	ko:K01681	ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00173,M00740	R01324,R01325,R01900	RC00497,RC00498,RC00618	br01601,ko00000,ko00001,ko00002,ko01000				Bacteria	2GJD5@201174,4CZ3T@85004,COG1048@1,COG1048@2	NA|NA|NA	C	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DNDENEON_00830	547043.BIFPSEUDO_02965	0.0	1583.9	Bifidobacteriales	ctpE	GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070588,GO:0070838,GO:0071944,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132		ko:K12952					ko00000,ko01000	3.A.3.23			Bacteria	2GJJC@201174,4CYS1@85004,COG0474@1,COG0474@2	NA|NA|NA	P	E1-E2 ATPase
DNDENEON_00831	547043.BIFPSEUDO_02966	3.3e-98	364.4	Bifidobacteriales													Bacteria	2AVVG@1,2INFG@201174,31MP9@2,4D12J@85004	NA|NA|NA		
DNDENEON_00832	547043.BIFPSEUDO_02967	2.8e-243	847.4	Bifidobacteriales	trmA	GO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0019843,GO:0030488,GO:0030696,GO:0030697,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363	2.1.1.190,2.1.1.35	ko:K00557,ko:K03215					ko00000,ko01000,ko03009,ko03016				Bacteria	2GIR3@201174,4CYYN@85004,COG2265@1,COG2265@2	NA|NA|NA	J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DNDENEON_00833	547043.BIFPSEUDO_02968	2.4e-133	481.5	Bifidobacteriales													Bacteria	2AVV0@1,2GJKP@201174,31MNQ@2,4CYQX@85004	NA|NA|NA	S	Protein of unknown function (DUF3159)
DNDENEON_00834	547043.BIFPSEUDO_02969	3.7e-151	540.8	Bifidobacteriales													Bacteria	28J4D@1,2GJYC@201174,2Z90C@2,4CZG1@85004	NA|NA|NA	S	Protein of unknown function (DUF3710)
DNDENEON_00835	547043.BIFPSEUDO_02970	1.4e-172	612.1	Bifidobacteriales	exoA		3.1.11.2	ko:K01142	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	2GKIS@201174,4CYVB@85004,COG0708@1,COG0708@2	NA|NA|NA	L	Endonuclease/Exonuclease/phosphatase family
DNDENEON_00836	547043.BIFPSEUDO_02971	0.0	1315.1	Bifidobacteriales	dppD			ko:K02031,ko:K02032	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GIXV@201174,4D2V0@85004,COG0444@1,COG0444@2,COG1123@1,COG4172@2	NA|NA|NA	EP	Oligopeptide/dipeptide transporter, C-terminal region
DNDENEON_00837	547043.BIFPSEUDO_02972	4.1e-170	604.0	Bifidobacteriales	dppC			ko:K02034,ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GJ9E@201174,4CYQF@85004,COG1173@1,COG1173@2	NA|NA|NA	EP	N-terminal TM domain of oligopeptide transport permease C
DNDENEON_00838	547043.BIFPSEUDO_02973	1.6e-155	555.4	Bifidobacteriales	dppB			ko:K02033,ko:K13890,ko:K15581,ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00348,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.11,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GJ2C@201174,4CZSV@85004,COG0601@1,COG0601@2	NA|NA|NA	EP	Binding-protein-dependent transport system inner membrane component
DNDENEON_00839	547043.BIFPSEUDO_02974	0.0	1102.0	Bifidobacteriales				ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GIUH@201174,4CZFK@85004,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substrate-binding protein, family 5
DNDENEON_00840	547043.BIFPSEUDO_02975	0.0	1081.2	Bifidobacteriales				ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GIUH@201174,4CZFK@85004,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substrate-binding protein, family 5
DNDENEON_00841	547043.BIFPSEUDO_02976	1.6e-171	608.6	Bifidobacteriales	xerC	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03733,ko:K04763					ko00000,ko03036				Bacteria	2GNDP@201174,4CZCX@85004,COG4974@1,COG4974@2	NA|NA|NA	D	Belongs to the 'phage' integrase family. XerC subfamily
DNDENEON_00842	547043.BIFPSEUDO_02977	5.2e-08	62.8	Bifidobacteriales													Bacteria	2BGJ3@1,2IR91@201174,32AHC@2,4D17H@85004	NA|NA|NA		
DNDENEON_00843	547043.BIFPSEUDO_02977	2.8e-34	150.6	Bifidobacteriales													Bacteria	2BGJ3@1,2IR91@201174,32AHC@2,4D17H@85004	NA|NA|NA		
DNDENEON_00844	547043.BIFPSEUDO_02978	4.1e-192	677.2	Bifidobacteriales	tyrA	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.3.1.12,1.3.1.43	ko:K00210,ko:K00220,ko:K04517	ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230	M00025,M00040	R00732,R01728	RC00125	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKB4@201174,4CYV2@85004,COG0287@1,COG0287@2	NA|NA|NA	E	Prephenate dehydrogenase
DNDENEON_00845	566552.BIFCAT_00490	2.9e-179	634.4	Bifidobacteriales	pheA		1.3.1.12,4.2.1.51,5.4.99.5	ko:K04517,ko:K04518,ko:K14170	ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230	M00024,M00025	R00691,R01373,R01715,R01728	RC00125,RC00360,RC03116	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJQ5@201174,4CZ61@85004,COG0077@1,COG0077@2	NA|NA|NA	E	Prephenate dehydratase
DNDENEON_00846	566552.BIFCAT_00489	6.2e-94	350.1	Bifidobacteriales													Bacteria	2E9EF@1,2IKWQ@201174,333MW@2,4D10T@85004	NA|NA|NA		
DNDENEON_00847	547043.BIFPSEUDO_02981	0.0	1275.0	Bifidobacteriales	typA	GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840		ko:K06207					ko00000				Bacteria	2GJUJ@201174,4CYX3@85004,COG1217@1,COG1217@2	NA|NA|NA	T	Elongation factor G C-terminus
DNDENEON_00848	78345.BMERY_0112	1.9e-218	765.0	Bifidobacteriales	iscS1		2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122		R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029				Bacteria	2GKUT@201174,4CZVW@85004,COG1104@1,COG1104@2	NA|NA|NA	E	Aminotransferase class-V
DNDENEON_00849	78345.BMERY_0111	5.2e-151	540.4	Bifidobacteriales	nadC	GO:0003674,GO:0003824,GO:0004514,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016020,GO:0016054,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0030312,GO:0034213,GO:0034641,GO:0034654,GO:0042737,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0072526,GO:0090407,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	1.4.3.16,2.4.2.19	ko:K00278,ko:K00767	ko00250,ko00760,ko01100,map00250,map00760,map01100	M00115	R00357,R00481,R03348	RC00006,RC02566,RC02877	ko00000,ko00001,ko00002,ko01000				Bacteria	2GV9P@201174,4CZWA@85004,COG0157@1,COG0157@2	NA|NA|NA	H	Quinolinate phosphoribosyl transferase, N-terminal domain
DNDENEON_00850	78345.BMERY_0110	3.5e-297	1026.9	Bifidobacteriales	nadB	GO:0008150,GO:0040007	1.3.5.4,1.4.3.16,2.4.2.19	ko:K00244,ko:K00278,ko:K00767	ko00020,ko00190,ko00250,ko00620,ko00650,ko00720,ko00760,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00250,map00620,map00650,map00720,map00760,map01100,map01110,map01120,map01130,map01200,map02020	M00009,M00011,M00115,M00150,M00173	R00357,R00481,R02164,R03348	RC00006,RC00045,RC02566,RC02877	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv1595	Bacteria	2I2IJ@201174,4D01P@85004,COG0029@1,COG0029@2	NA|NA|NA	H	Catalyzes the oxidation of L-aspartate to iminoaspartate
DNDENEON_00851	78345.BMERY_0109	2e-249	867.8	Bifidobacteriales	nadA	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	2.5.1.72	ko:K03517	ko00760,ko01100,map00760,map01100	M00115	R04292	RC01119	ko00000,ko00001,ko00002,ko01000				Bacteria	2GM59@201174,4D0AI@85004,COG0379@1,COG0379@2	NA|NA|NA	H	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
DNDENEON_00852	78345.BMERY_0108	3.4e-146	524.2	Bifidobacteriales	nrtR		3.6.1.55	ko:K03574					ko00000,ko01000,ko03400				Bacteria	2GNMT@201174,4CZNZ@85004,COG1051@1,COG1051@2	NA|NA|NA	F	NUDIX hydrolase
DNDENEON_00853	566552.BIFCAT_00482	2.6e-152	544.7	Bifidobacteriales	soj	GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0008150,GO:0009295,GO:0016020,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044424,GO:0044464,GO:0071944		ko:K03496					ko00000,ko03036,ko04812				Bacteria	2GJX3@201174,4CYV4@85004,COG1192@1,COG1192@2	NA|NA|NA	D	CobQ CobB MinD ParA nucleotide binding domain protein
DNDENEON_00854	566552.BIFCAT_00481	4e-173	614.0	Bifidobacteriales	xerD	GO:0008150,GO:0040007		ko:K03733,ko:K04763					ko00000,ko03036				Bacteria	2GNDP@201174,4CZ69@85004,COG4974@1,COG4974@2	NA|NA|NA	D	recombinase XerD
DNDENEON_00855	547043.BIFPSEUDO_02986	9.6e-62	242.7	Bifidobacteriales	rplT	GO:0000027,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006355,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2000113,GO:2001141		ko:K02887	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHTN@201174,4D0QF@85004,COG0292@1,COG0292@2	NA|NA|NA	J	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DNDENEON_00856	547043.BIFPSEUDO_02987	2.1e-25	120.9	Bifidobacteriales	rpmI	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904		ko:K02916	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2HZRM@201174,4D1EV@85004,COG0291@1,COG0291@2	NA|NA|NA	J	Ribosomal protein L35
DNDENEON_00857	566552.BIFCAT_00478	2.4e-103	381.7	Bifidobacteriales	infC	GO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767		ko:K02520					ko00000,ko03012,ko03029				Bacteria	2GJGT@201174,4CZA3@85004,COG0290@1,COG0290@2	NA|NA|NA	J	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DNDENEON_00858	566552.BIFCAT_00477	7.8e-140	503.1	Bifidobacteriales			2.7.6.2	ko:K00949	ko00730,ko01100,map00730,map01100		R00619	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	2HQZZ@201174,4CZBY@85004,COG1564@1,COG1564@2	NA|NA|NA	H	Thiamin pyrophosphokinase, vitamin B1 binding domain
DNDENEON_00859	547043.BIFPSEUDO_02991	1.6e-199	701.8	Bifidobacteriales	gap	GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009986,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0019362,GO:0019637,GO:0019674,GO:0022610,GO:0034641,GO:0036094,GO:0043891,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044464,GO:0044650,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051287,GO:0051704,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:0097159,GO:0140030,GO:0140032,GO:1901265,GO:1901360,GO:1901363,GO:1901564	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147			iJR904.b1416,iJR904.b1417	Bacteria	2GJK4@201174,4CZ97@85004,COG0057@1,COG0057@2	NA|NA|NA	G	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
DNDENEON_00860	547043.BIFPSEUDO_02992	5e-90	337.0	Bifidobacteriales	ybaK	GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0043906,GO:0043907,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360		ko:K03976					ko00000,ko01000,ko03016				Bacteria	2IHS8@201174,4CZFI@85004,COG2606@1,COG2606@2	NA|NA|NA	J	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DNDENEON_00861	547043.BIFPSEUDO_02993	6.2e-185	653.3	Bifidobacteriales	ispH		1.17.7.4,2.7.4.25	ko:K00945,ko:K02945,ko:K03527	ko00240,ko00900,ko01100,ko01110,ko01130,ko03010,map00240,map00900,map01100,map01110,map01130,map03010	M00052,M00096,M00178	R00158,R00512,R01665,R05884,R08210	RC00002,RC01137,RC01487	br01610,ko00000,ko00001,ko00002,ko01000,ko03011			iIT341.HP0400,iLJ478.TM1444	Bacteria	2GIZ7@201174,4CZ8B@85004,COG0761@1,COG0761@2	NA|NA|NA	IM	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DNDENEON_00862	566552.BIFCAT_00473	4.3e-188	663.7	Bifidobacteriales	galM		5.1.3.3	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	M00632	R01602,R10619	RC00563	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ0H@201174,4CYWN@85004,COG2017@1,COG2017@2	NA|NA|NA	G	Aldose 1-epimerase
DNDENEON_00863	547043.BIFPSEUDO_02995	1.2e-36	158.7	Bifidobacteriales													Bacteria	29M53@1,2GTWX@201174,3082I@2,4D1EJ@85004	NA|NA|NA		
DNDENEON_00864	566552.BIFCAT_00470	1.3e-97	362.5	Bifidobacteriales	sigH			ko:K03088					ko00000,ko03021				Bacteria	2GJ02@201174,4CZ09@85004,COG1595@1,COG1595@2	NA|NA|NA	K	Belongs to the sigma-70 factor family. ECF subfamily
DNDENEON_00865	566552.BIFCAT_00469	1.3e-271	941.8	Bifidobacteriales	murE		6.3.2.13,6.3.2.7	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100		R02786,R02788	RC00064,RC00090	ko00000,ko00001,ko01000,ko01011				Bacteria	2GIS2@201174,4CZAF@85004,COG0769@1,COG0769@2	NA|NA|NA	M	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DNDENEON_00866	566552.BIFCAT_00468	9.5e-186	656.0	Bifidobacteriales				ko:K12554	ko00550,ko01100,map00550,map01100		R08780	RC00055,RC00064	ko00000,ko00001,ko01000,ko01011				Bacteria	2GJUD@201174,4CZT9@85004,COG2348@1,COG2348@2	NA|NA|NA	V	Acetyltransferase (GNAT) domain
DNDENEON_00867	566552.BIFCAT_00466	1.9e-289	1001.1	Bifidobacteriales	folC	GO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006761,GO:0006807,GO:0008150,GO:0008152,GO:0008841,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046452,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv2447c	Bacteria	2GJP2@201174,4CZG9@85004,COG0285@1,COG0285@2	NA|NA|NA	H	Mur ligase middle domain
DNDENEON_00868	547043.BIFPSEUDO_03002	0.0	1081.2	Bifidobacteriales	pepP		3.4.11.9	ko:K01262					ko00000,ko01000,ko01002				Bacteria	2GM7D@201174,4CZIA@85004,COG0006@1,COG0006@2	NA|NA|NA	E	Aminopeptidase P, N-terminal domain
DNDENEON_00869	547043.BIFPSEUDO_03003	9e-95	352.8	Bifidobacteriales			3.6.1.55	ko:K03574,ko:K06287					ko00000,ko01000,ko03400				Bacteria	2IKKB@201174,4CZS4@85004,COG1051@1,COG1051@2	NA|NA|NA	F	NUDIX domain
DNDENEON_00870	547043.BIFPSEUDO_03004	0.0	1093.6	Bifidobacteriales				ko:K02031,ko:K02032	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2H3HY@201174,4CYU0@85004,COG1123@1,COG4172@2	NA|NA|NA	P	Belongs to the ABC transporter superfamily
DNDENEON_00871	547043.BIFPSEUDO_03005	4.7e-192	677.2	Bifidobacteriales	dppC			ko:K02034,ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GKAW@201174,4CZ2Y@85004,COG1173@1,COG1173@2	NA|NA|NA	EP	Binding-protein-dependent transport system inner membrane component
DNDENEON_00872	547043.BIFPSEUDO_03006	1.7e-188	665.2	Bifidobacteriales	dppB			ko:K02033	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GJ2C@201174,4CZSV@85004,COG0601@1,COG0601@2	NA|NA|NA	EP	Binding-protein-dependent transport system inner membrane component
DNDENEON_00873	547043.BIFPSEUDO_03007	6.1e-307	1059.3	Bifidobacteriales	ddpA			ko:K02035	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GMAX@201174,4D2RC@85004,COG0747@1,COG0747@2	NA|NA|NA	E	Bacterial extracellular solute-binding proteins, family 5 Middle
DNDENEON_00874	547043.BIFPSEUDO_03008	6.6e-218	763.1	Bifidobacteriales													Bacteria	2GJ2S@201174,4CYV9@85004,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
DNDENEON_00875	547043.BIFPSEUDO_03009	2.9e-165	587.8	Bifidobacteriales			2.7.1.4	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100		R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	2HZB3@201174,4CZFC@85004,COG0524@1,COG0524@2	NA|NA|NA	G	pfkB family carbohydrate kinase
DNDENEON_00876	401473.BDP_1535	4.6e-220	770.4	Bifidobacteriales				ko:K09704					ko00000				Bacteria	2HHAF@201174,4CZYN@85004,COG3538@1,COG3538@2	NA|NA|NA	S	Metal-independent alpha-mannosidase (GH125)
DNDENEON_00877	398513.BBNG_00476	1.6e-27	129.0	Bifidobacteriales													Bacteria	2B3SJ@1,2GX7W@201174,31WG6@2,4D1T0@85004	NA|NA|NA		
DNDENEON_00878	547043.BIFPSEUDO_03011	8.4e-248	862.4	Bifidobacteriales	yihS		5.1.3.11	ko:K16213			R01445,R10810	RC00289	ko00000,ko01000				Bacteria	2GMJ7@201174,4CZNY@85004,COG2942@1,COG2942@2	NA|NA|NA	G	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
DNDENEON_00879	547043.BIFPSEUDO_03012	1.7e-140	505.8	Bifidobacteriales	ftsQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944	6.3.2.4	ko:K01921,ko:K03589,ko:K06438	ko00473,ko00550,ko01100,ko01502,ko04112,map00473,map00550,map01100,map01502,map04112		R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011,ko03036				Bacteria	2H4A4@201174,4D04A@85004,COG1589@1,COG1589@2	NA|NA|NA	D	Cell division protein FtsQ
DNDENEON_00880	547043.BIFPSEUDO_03013	4e-271	940.3	Bifidobacteriales	murC	GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	6.3.2.8	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100		R03193	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	2I2E7@201174,4CZ3B@85004,COG0773@1,COG0773@2	NA|NA|NA	M	Belongs to the MurCDEF family
DNDENEON_00881	547043.BIFPSEUDO_03014	6.3e-216	756.5	Bifidobacteriales	murG	GO:0008150,GO:0040007	2.4.1.227,6.3.2.8	ko:K01924,ko:K02563	ko00471,ko00550,ko01100,ko01502,ko04112,map00471,map00550,map01100,map01502,map04112		R03193,R05032,R05662	RC00005,RC00049,RC00064,RC00141	ko00000,ko00001,ko01000,ko01011		GT28	iLJ478.TM0232	Bacteria	2GJEM@201174,4CYQS@85004,COG0707@1,COG0707@2	NA|NA|NA	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DNDENEON_00882	566552.BIFCAT_00455	8.1e-203	713.0	Bifidobacteriales	ftsW	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0008360,GO:0009987,GO:0015647,GO:0015648,GO:0015835,GO:0015836,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032153,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051301,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071944,GO:1901264,GO:1901505	2.4.1.227	ko:K02563,ko:K03588	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112		R05032,R05662	RC00005,RC00049	ko00000,ko00001,ko01000,ko01011,ko02000,ko03036	2.A.103.1	GT28		Bacteria	2GKXP@201174,4CYPZ@85004,COG0772@1,COG0772@2	NA|NA|NA	D	Belongs to the SEDS family
DNDENEON_00883	566552.BIFCAT_00454	2.1e-255	887.9	Bifidobacteriales	murD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464	6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100		R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011			iNJ661.Rv2155c	Bacteria	2GJZA@201174,4CZKI@85004,COG0771@1,COG0771@2	NA|NA|NA	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DNDENEON_00884	547043.BIFPSEUDO_03017	8.8e-193	679.5	Bifidobacteriales	mraY	GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502		R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146		iAF987.Gmet_0409,iEC042_1314.EC042_0088,iECABU_c1320.ECABU_c00920,iECED1_1282.ECED1_0088,iECH74115_1262.ECH74115_0095,iECSP_1301.ECSP_0090,iECs_1301.ECs0091,iG2583_1286.G2583_0091,iSDY_1059.SDY_0117,iZ_1308.Z0097,ic_1306.c0105	Bacteria	2GNEH@201174,4CYRX@85004,COG0472@1,COG0472@2	NA|NA|NA	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DNDENEON_00885	547043.BIFPSEUDO_03018	6.4e-263	912.9	Bifidobacteriales	murF		6.3.2.10	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502		R04573,R04617	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	2GK0Y@201174,4CZ7U@85004,COG0770@1,COG0770@2	NA|NA|NA	M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
DNDENEON_00886	547043.BIFPSEUDO_03019	4.2e-153	547.4	Bifidobacteriales	yqeC		6.3.2.10,6.3.2.13	ko:K01928,ko:K15792	ko00300,ko00550,map00300,map00550		R02788,R04617	RC00064,RC00090,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	2GMZF@201174,4CYWT@85004,COG0769@1,COG0769@2	NA|NA|NA	M	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DNDENEON_00887	566552.BIFCAT_00450	0.0	1126.7	Bifidobacteriales	ftsI	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681	3.4.16.4	ko:K03587,ko:K08384,ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501				ko00000,ko00001,ko01000,ko01011,ko03036			iSSON_1240.SSON_0092	Bacteria	2GKHH@201174,4CYS8@85004,COG0768@1,COG0768@2	NA|NA|NA	M	Penicillin-binding protein, transpeptidase domain protein
DNDENEON_00888	1680.BADO_1158	1.8e-62	245.4	Bifidobacteriales	ftsL			ko:K05589,ko:K12065					ko00000,ko02044,ko03036	3.A.7.11.1			Bacteria	2IKUA@201174,4D109@85004,COG2919@1,COG2919@2	NA|NA|NA	D	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
DNDENEON_00889	547043.BIFPSEUDO_03022	1.3e-190	672.2	Bifidobacteriales	rsmH	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.199	ko:K03438					ko00000,ko01000,ko03009				Bacteria	2GJGK@201174,4CYRM@85004,COG0275@1,COG0275@2	NA|NA|NA	J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
DNDENEON_00890	547043.BIFPSEUDO_03023	1.2e-91	342.4	Bifidobacteriales	mraZ	GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0040007,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141		ko:K03925					ko00000				Bacteria	2IHUB@201174,4D0P1@85004,COG2001@1,COG2001@2	NA|NA|NA	K	Belongs to the MraZ family
DNDENEON_00891	547043.BIFPSEUDO_03024	0.0	1469.1	Bifidobacteriales													Bacteria	2GK30@201174,4CYUF@85004,COG3973@1,COG3973@2	NA|NA|NA	L	DNA helicase
DNDENEON_00892	1680.BADO_1162	8.7e-218	762.7	Bifidobacteriales	serA	GO:0003674,GO:0003824,GO:0004617,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008219,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0012501,GO:0016053,GO:0016491,GO:0016597,GO:0016614,GO:0016616,GO:0019752,GO:0031406,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047545,GO:0055114,GO:0070905,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147			iYL1228.KPN_03348	Bacteria	2GJGA@201174,4CYPT@85004,COG0111@1,COG0111@2	NA|NA|NA	EH	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
DNDENEON_00893	547043.BIFPSEUDO_03027	8.5e-84	316.2	Bifidobacteriales	nrdR	GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141		ko:K07738					ko00000,ko03000				Bacteria	2IHU9@201174,4D0P7@85004,COG1327@1,COG1327@2	NA|NA|NA	K	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DNDENEON_00894	547043.BIFPSEUDO_03028	8.8e-53	212.6	Bifidobacteriales													Bacteria	2HVH4@201174,4D1G8@85004,COG1388@1,COG1388@2	NA|NA|NA	M	Lysin motif
DNDENEON_00895	547043.BIFPSEUDO_03029	2.2e-131	474.9	Bifidobacteriales	lexA		3.4.21.88	ko:K01356		M00729			ko00000,ko00002,ko01000,ko01002,ko03400				Bacteria	2GMBN@201174,4CZ26@85004,COG1974@1,COG1974@2	NA|NA|NA	K	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DNDENEON_00896	547043.BIFPSEUDO_03030	1.3e-149	535.8	Bifidobacteriales	czcD			ko:K16264					ko00000,ko02000	2.A.4.1			Bacteria	2GMRZ@201174,4CZAB@85004,COG1230@1,COG1230@2	NA|NA|NA	P	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DNDENEON_00897	1680.BADO_1167	1.1e-175	622.5	Bifidobacteriales	ldh		1.1.1.27,1.1.1.37	ko:K00016,ko:K00024	ko00010,ko00020,ko00270,ko00620,ko00630,ko00640,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04922,map00010,map00020,map00270,map00620,map00630,map00640,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map04922	M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740	R00342,R00703,R01000,R03104,R07136	RC00031,RC00044	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GN5S@201174,4CYWK@85004,COG0039@1,COG0039@2	NA|NA|NA	C	Belongs to the LDH MDH superfamily. LDH family
DNDENEON_00898	1680.BADO_1168	2.1e-253	881.3	Bifidobacteriales	hflX	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464		ko:K03665					ko00000,ko03009				Bacteria	2GK55@201174,4CZCB@85004,COG2262@1,COG2262@2	NA|NA|NA	S	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DNDENEON_00899	547043.BIFPSEUDO_03033	1.3e-105	389.0	Bifidobacteriales	rsmC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464	2.1.1.172	ko:K00564			R07234	RC00003	ko00000,ko01000,ko03009				Bacteria	2IFG7@201174,4CZP1@85004,COG2813@1,COG2813@2	NA|NA|NA	J	Ribosomal protein L11 methyltransferase (PrmA)
DNDENEON_00900	1680.BADO_1170	0.0	2608.6	Bifidobacteriales	hrpA	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360	3.6.4.13	ko:K03578					ko00000,ko01000				Bacteria	2GIWX@201174,4CZ3C@85004,COG1643@1,COG1643@2	NA|NA|NA	L	Helicase associated domain (HA2)  Add an annotation
DNDENEON_00901	1680.BADO_1171	1.6e-175	622.1	Bifidobacteriales													Bacteria	2C746@1,2I2G8@201174,340R4@2,4CZHI@85004	NA|NA|NA		
DNDENEON_00902	1680.BADO_1172	6.1e-178	630.2	Bifidobacteriales													Bacteria	2I9EN@201174,4D025@85004,COG3023@1,COG3023@2	NA|NA|NA	V	N-Acetylmuramoyl-L-alanine amidase
DNDENEON_00903	1680.BADO_1173	3.9e-116	424.1	Bifidobacteriales	ytrE			ko:K02003,ko:K09810,ko:K10038	ko02010,map02010	M00227,M00255,M00258			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.125,3.A.1.3.2			Bacteria	2ICH8@201174,4CZF8@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
DNDENEON_00904	1680.BADO_1174	3.8e-120	437.6	Bifidobacteriales													Bacteria	2F769@1,2IFMJ@201174,33ZMP@2,4D0UD@85004	NA|NA|NA		
DNDENEON_00905	566552.BIFCAT_00083	3.8e-13	80.9	Bifidobacteriales			2.7.13.3	ko:K07675,ko:K20263	ko02020,ko02024,map02020,map02024	M00473,M00818			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	2II1W@201174,4D0V3@85004,COG4585@1,COG4585@2	NA|NA|NA	T	Histidine kinase
DNDENEON_00906	1680.BADO_1176	3.5e-24	117.1	Bifidobacteriales													Bacteria	2GPC6@201174,4D16R@85004,COG2197@1,COG2197@2	NA|NA|NA	T	helix_turn_helix, Lux Regulon
DNDENEON_00907	78346.BRUM_0317	3.5e-24	116.7	Bifidobacteriales													Bacteria	2GPC6@201174,4D16R@85004,COG2197@1,COG2197@2	NA|NA|NA	T	helix_turn_helix, Lux Regulon
DNDENEON_00908	1680.BADO_1176	2e-71	275.0	Bifidobacteriales													Bacteria	2GPC6@201174,4D16R@85004,COG2197@1,COG2197@2	NA|NA|NA	T	helix_turn_helix, Lux Regulon
DNDENEON_00910	1680.BADO_1174	2.6e-97	361.7	Bifidobacteriales													Bacteria	2F769@1,2IFMJ@201174,33ZMP@2,4D0UD@85004	NA|NA|NA		
DNDENEON_00911	1680.BADO_1174	5.4e-17	94.4	Bifidobacteriales													Bacteria	2F769@1,2IFMJ@201174,33ZMP@2,4D0UD@85004	NA|NA|NA		
DNDENEON_00912	1680.BADO_1177	1.8e-42	179.5	Bifidobacteriales													Bacteria	2F769@1,2IPFW@201174,31QKG@2,4D115@85004	NA|NA|NA		
DNDENEON_00913	1680.BADO_1177	5.9e-124	450.3	Bifidobacteriales													Bacteria	2F769@1,2IPFW@201174,31QKG@2,4D115@85004	NA|NA|NA		
DNDENEON_00914	547043.BIFPSEUDO_03039	1.2e-211	742.3	Bifidobacteriales													Bacteria	2GK8C@201174,4CZH1@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_00915	547043.BIFPSEUDO_03040	8.1e-139	500.0	Bifidobacteriales													Bacteria	2HYIN@201174,4CYU1@85004,COG5479@1,COG5479@2	NA|NA|NA	M	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
DNDENEON_00916	547043.BIFPSEUDO_03041	2.4e-217	761.5	Bifidobacteriales													Bacteria	2AZXA@1,2GQBM@201174,31S72@2,4D1E0@85004	NA|NA|NA	S	Domain of unknown function (DUF5067)
DNDENEON_00917	547043.BIFPSEUDO_03042	3.1e-264	917.1	Bifidobacteriales	glnA2	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0044464,GO:0050001,GO:0071944	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727		R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147				Bacteria	2GJ2I@201174,4CZ0G@85004,COG0174@1,COG0174@2	NA|NA|NA	E	glutamine synthetase
DNDENEON_00918	547043.BIFPSEUDO_03043	1.4e-130	472.2	Bifidobacteriales	hisA	GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.3.1.16,5.3.1.24	ko:K01814,ko:K01817	ko00340,ko00400,ko01100,ko01110,ko01130,ko01230,map00340,map00400,map01100,map01110,map01130,map01230	M00023,M00026	R03509,R04640	RC00945	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ4V@201174,4CZEA@85004,COG0106@1,COG0106@2	NA|NA|NA	E	Histidine biosynthesis protein
DNDENEON_00919	547043.BIFPSEUDO_03044	1.4e-121	442.2	Bifidobacteriales	hisH	GO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607		ko:K02501	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04558	RC00010,RC01190,RC01943	ko00000,ko00001,ko00002,ko01000				Bacteria	2GIYS@201174,4CZGA@85004,COG0118@1,COG0118@2	NA|NA|NA	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DNDENEON_00920	547043.BIFPSEUDO_03045	1.5e-122	445.7	Bifidobacteriales													Bacteria	2EKCN@1,2GNIC@201174,33E2Y@2,4D0B5@85004	NA|NA|NA		
DNDENEON_00921	547043.BIFPSEUDO_03046	1.5e-109	402.1	Bifidobacteriales	hisB	GO:0000105,GO:0003674,GO:0003824,GO:0004401,GO:0004424,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042578,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.23,2.6.1.9,3.1.3.15,4.2.1.19	ko:K00013,ko:K00817,ko:K01089,ko:K01693	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	M00026	R00694,R00734,R01158,R01163,R03012,R03013,R03243,R03457	RC00006,RC00017,RC00099,RC00242,RC00463,RC00888,RC00932	ko00000,ko00001,ko00002,ko01000,ko01007			iECO111_1330.ECO111_2746,iECS88_1305.ECS88_2121,iJN746.PP_0289,iLJ478.TM1039,iSB619.SA_RS14130,iUMNK88_1353.UMNK88_2570	Bacteria	2GKMD@201174,4CZDD@85004,COG0131@1,COG0131@2	NA|NA|NA	E	Imidazoleglycerol-phosphate dehydratase
DNDENEON_00922	547043.BIFPSEUDO_03047	2.5e-225	787.7	Bifidobacteriales	hisC	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944	2.6.1.9	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	M00026	R00694,R00734,R03243	RC00006,RC00888	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	2GJ9W@201174,4CZDT@85004,COG0079@1,COG0079@2	NA|NA|NA	E	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DNDENEON_00923	547043.BIFPSEUDO_03048	2.4e-259	901.0	Bifidobacteriales	hisD	GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.23,1.1.1.308	ko:K00013,ko:K15509	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01158,R01163,R03012	RC00099,RC00242,RC00463	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv1599	Bacteria	2GKKA@201174,4CZ3E@85004,COG0141@1,COG0141@2	NA|NA|NA	E	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DNDENEON_00924	547043.BIFPSEUDO_03049	0.0	2410.9	Bifidobacteriales	dnaE		2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2GJ1P@201174,4CZKT@85004,COG0587@1,COG0587@2	NA|NA|NA	L	DNA polymerase III alpha subunit
DNDENEON_00925	547043.BIFPSEUDO_03050	4.9e-176	623.6	Bifidobacteriales	rluD	GO:0000027,GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022607,GO:0022613,GO:0022618,GO:0031118,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360	5.4.99.23,5.4.99.28,5.4.99.29	ko:K06177,ko:K06180					ko00000,ko01000,ko03009,ko03016			iE2348C_1286.E2348C_2868,iECED1_1282.ECED1_3035,iECSF_1327.ECSF_2432	Bacteria	2GIY1@201174,4CYYR@85004,COG0564@1,COG0564@2	NA|NA|NA	J	Responsible for synthesis of pseudouridine from uracil
DNDENEON_00926	547043.BIFPSEUDO_03051	4.3e-87	327.4	Bifidobacteriales	lspA		3.4.23.36	ko:K03101	ko03060,map03060				ko00000,ko00001,ko01000,ko01002				Bacteria	2GKRX@201174,4D0WR@85004,COG0597@1,COG0597@2	NA|NA|NA	MU	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DNDENEON_00927	547043.BIFPSEUDO_03052	1.3e-30	141.4	Bifidobacteriales			3.1.21.3	ko:K01153,ko:K02557,ko:K10352,ko:K18682	ko02030,ko02040,ko03018,ko04530,map02030,map02040,map03018,map04530				ko00000,ko00001,ko01000,ko02000,ko02035,ko02048,ko03019,ko04147,ko04812	1.A.30.1			Bacteria	2I2G9@201174,4CZ5W@85004,COG1566@1,COG1566@2	NA|NA|NA	V	DivIVA protein
DNDENEON_00928	547043.BIFPSEUDO_03053	1.2e-40	172.2	Bifidobacteriales	yggT	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K02221					ko00000,ko02044				Bacteria	2GQI1@201174,4D17B@85004,COG0762@1,COG0762@2	NA|NA|NA	S	YGGT family
DNDENEON_00929	547043.BIFPSEUDO_03054	8.9e-81	306.2	Bifidobacteriales	sepF	GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022607,GO:0032506,GO:0042802,GO:0044085,GO:0051301,GO:0071840,GO:0090529		ko:K09772					ko00000,ko03036				Bacteria	2GNVH@201174,4D0RJ@85004,COG1799@1,COG1799@2	NA|NA|NA	D	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
DNDENEON_00930	547043.BIFPSEUDO_03055	5.6e-220	770.0	Bifidobacteriales	ftsZ	GO:0000166,GO:0000287,GO:0000910,GO:0000921,GO:0000935,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0022607,GO:0030428,GO:0031106,GO:0032153,GO:0032155,GO:0032185,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0045787,GO:0046872,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051258,GO:0051301,GO:0051726,GO:0065003,GO:0065007,GO:0070925,GO:0071840,GO:0071944,GO:0090529,GO:0097159,GO:0097367,GO:1901265,GO:1901363		ko:K03531	ko04112,map04112				ko00000,ko00001,ko02048,ko03036,ko04812				Bacteria	2GJWC@201174,4CZ10@85004,COG0206@1,COG0206@2	NA|NA|NA	D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DNDENEON_00931	547043.BIFPSEUDO_03056	1.1e-244	852.0	Bifidobacteriales	dus	GO:0008150,GO:0010565,GO:0019216,GO:0019217,GO:0019222,GO:0031323,GO:0050789,GO:0050794,GO:0062012,GO:0065007,GO:0080090											Bacteria	2GJ8I@201174,4CZFD@85004,COG0042@1,COG0042@2	NA|NA|NA	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DNDENEON_00932	547043.BIFPSEUDO_03057	1.3e-295	1021.5	Bifidobacteriales	glyQS	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.14	ko:K01880	ko00970,map00970	M00359,M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029			iSB619.SA_RS07880	Bacteria	2GIT3@201174,4CYZU@85004,COG0423@1,COG0423@2	NA|NA|NA	J	Catalyzes the attachment of glycine to tRNA(Gly)
DNDENEON_00933	547043.BIFPSEUDO_03058	1e-105	389.4	Bifidobacteriales				ko:K02664					ko00000,ko02035,ko02044				Bacteria	2C85K@1,2HZWT@201174,3482I@2,4D004@85004	NA|NA|NA	S	Pilus assembly protein, PilO
DNDENEON_00934	547043.BIFPSEUDO_03059	1.8e-165	588.6	Bifidobacteriales	pilN			ko:K02663					ko00000,ko02035,ko02044				Bacteria	2IBVZ@201174,4D002@85004,COG3166@1,COG3166@2	NA|NA|NA	NU	PFAM Fimbrial assembly family protein
DNDENEON_00935	547043.BIFPSEUDO_03060	3e-190	671.0	Bifidobacteriales	pilM			ko:K02662					ko00000,ko02035,ko02044				Bacteria	2IBNF@201174,4D02I@85004,COG4972@1,COG4972@2	NA|NA|NA	NU	Type IV pilus assembly protein PilM;
DNDENEON_00936	547043.BIFPSEUDO_03061	2.4e-150	538.1	Bifidobacteriales	pilD		3.4.23.43	ko:K02278,ko:K02654		M00331			ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2			Bacteria	2GJ7K@201174,4D0GI@85004,COG1989@1,COG1989@2	NA|NA|NA	NOU	Bacterial Peptidase A24 N-terminal domain
DNDENEON_00937	547043.BIFPSEUDO_03062	0.0	1508.4	Bifidobacteriales													Bacteria	2AMW2@1,2I96K@201174,31CSW@2,4D06S@85004	NA|NA|NA		
DNDENEON_00938	547043.BIFPSEUDO_03063	4.7e-230	803.5	Bifidobacteriales	pilC			ko:K02653					ko00000,ko02035,ko02044	3.A.15.2			Bacteria	2GQW0@201174,4D03V@85004,COG1459@1,COG1459@2	NA|NA|NA	U	Type II secretion system (T2SS), protein F
DNDENEON_00939	1680.BADO_1203	2.4e-46	191.8	Bifidobacteriales	pilA			ko:K02650	ko02020,map02020				ko00000,ko00001,ko02035,ko02044	3.A.15.2			Bacteria	2GTN8@201174,4D13E@85004,COG2165@1,COG2165@2	NA|NA|NA	NU	Prokaryotic N-terminal methylation motif
DNDENEON_00940	547043.BIFPSEUDO_03066	2.1e-104	385.2	Bifidobacteriales													Bacteria	2ARXR@1,2IGG9@201174,31H9N@2,4D0QT@85004	NA|NA|NA	S	Prokaryotic N-terminal methylation motif
DNDENEON_00941	547043.BIFPSEUDO_03067	4.9e-137	493.8	Bifidobacteriales	ppdC			ko:K02458,ko:K02671,ko:K02681	ko03070,ko05111,map03070,map05111	M00331			ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15			Bacteria	2IA38@201174,4D0NY@85004,COG4967@1,COG4967@2	NA|NA|NA	NU	Prokaryotic N-terminal methylation motif
DNDENEON_00942	547043.BIFPSEUDO_03068	0.0	1135.6	Bifidobacteriales	pulE			ko:K02652					ko00000,ko02035,ko02044	3.A.15.2			Bacteria	2I8C2@201174,4CZG8@85004,COG2804@1,COG2804@2	NA|NA|NA	NU	Type II/IV secretion system protein
DNDENEON_00943	547043.BIFPSEUDO_03069	0.0	1148.3	Bifidobacteriales	pilT			ko:K02669					ko00000,ko02035,ko02044	3.A.15.2			Bacteria	2I9GT@201174,4D04P@85004,COG2805@1,COG2805@2	NA|NA|NA	NU	Type II/IV secretion system protein
DNDENEON_00944	547043.BIFPSEUDO_03070	0.0	1242.3	Bifidobacteriales													Bacteria	28N8A@1,2ICHB@201174,2ZQTH@2,4CZQ0@85004	NA|NA|NA		
DNDENEON_00945	547043.BIFPSEUDO_03071	1.9e-153	548.5	Bifidobacteriales	thiM		2.7.1.50	ko:K00878	ko00730,ko01100,map00730,map01100	M00127	R04448	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2IC73@201174,4CZU8@85004,COG2145@1,COG2145@2	NA|NA|NA	H	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
DNDENEON_00946	547043.BIFPSEUDO_03072	2e-132	478.4	Bifidobacteriales	thiE	GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.3,2.7.1.49,2.7.4.7,4.1.99.17	ko:K00788,ko:K03147,ko:K14153	ko00730,ko01100,map00730,map01100	M00127	R03223,R03471,R03472,R04509,R10712	RC00002,RC00017,RC00224,RC03251,RC03252,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000			iYO844.BSU38290	Bacteria	2I2GC@201174,4D2V2@85004,COG0352@1,COG0352@2	NA|NA|NA	H	Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
DNDENEON_00947	547043.BIFPSEUDO_03073	2.9e-151	541.2	Bifidobacteriales	thiD		2.5.1.3,2.7.1.49,2.7.4.7,4.1.99.17	ko:K00941,ko:K03147,ko:K14153	ko00730,ko01100,map00730,map01100	M00127	R03223,R03471,R03472,R04509,R10712	RC00002,RC00017,RC00224,RC03251,RC03252,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_2909	Bacteria	2GKZM@201174,4CYQA@85004,COG0351@1,COG0351@2	NA|NA|NA	H	Phosphomethylpyrimidine kinase
DNDENEON_00948	547043.BIFPSEUDO_03074	3e-60	237.7	Bifidobacteriales		GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464											Bacteria	2IQ7E@201174,4D14E@85004,COG0011@1,COG0011@2	NA|NA|NA	S	Thiamine-binding protein
DNDENEON_00949	566552.BIFCAT_00412	2.4e-192	677.9	Bifidobacteriales				ko:K02529					ko00000,ko03000				Bacteria	2GJY9@201174,4CYU5@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_00950	401473.BDP_1602	6.2e-241	839.7	Bifidobacteriales	lacY			ko:K02532,ko:K05820,ko:K08167,ko:K08218,ko:K08369	ko01501,map01501	M00628,M00713,M00714			ko00000,ko00001,ko00002,ko01504,ko02000	2.A.1,2.A.1.25,2.A.1.27,2.A.1.3,2.A.1.5			Bacteria	2GJRD@201174,4CYTK@85004,COG2807@1,COG2807@2	NA|NA|NA	P	LacY proton/sugar symporter
DNDENEON_00951	547043.BIFPSEUDO_03078	0.0	1092.4	Bifidobacteriales	cscA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.2.1.26	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00801,R00802,R02410,R03635,R03921,R06088	RC00028,RC00077	ko00000,ko00001,ko01000		GH32	iE2348C_1286.E2348C_2556,iEC55989_1330.EC55989_2656,iECIAI1_1343.ECIAI1_2428	Bacteria	2GJ9T@201174,4CZ8W@85004,COG1621@1,COG1621@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 32 family
DNDENEON_00952	547043.BIFPSEUDO_03079	1.5e-137	495.7	Bifidobacteriales	ytlD1		2.7.1.50	ko:K00878,ko:K15599	ko00730,ko01100,ko02010,map00730,map01100,map02010	M00127,M00442	R04448	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.17.3,3.A.1.17.6			Bacteria	2GKKZ@201174,4CZ9Q@85004,COG0600@1,COG0600@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_00953	547043.BIFPSEUDO_03080	2.6e-205	721.1	Bifidobacteriales				ko:K02051		M00188			ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17			Bacteria	2HZ9T@201174,4CZ56@85004,COG0715@1,COG0715@2	NA|NA|NA	P	NMT1/THI5 like
DNDENEON_00954	547043.BIFPSEUDO_03081	5.4e-218	763.5	Bifidobacteriales	iunH1		3.2.2.1	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100		R01245,R01273,R01677,R01770,R02143	RC00033,RC00063,RC00122,RC00318,RC00485	ko00000,ko00001,ko01000				Bacteria	2I9SG@201174,4CZWE@85004,COG1957@1,COG1957@2	NA|NA|NA	F	nucleoside hydrolase
DNDENEON_00955	547043.BIFPSEUDO_03082	4e-155	553.9	Bifidobacteriales	uppS	GO:0000287,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008834,GO:0009058,GO:0009987,GO:0016020,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0030145,GO:0033850,GO:0040007,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0046872,GO:0046914,GO:0050347,GO:0071704,GO:0071944,GO:1901576,GO:1901615,GO:1901617	2.5.1.31,2.5.1.86,2.5.1.88	ko:K00806,ko:K14215,ko:K21273	ko00900,ko01110,map00900,map01110		R06447,R09244,R09731	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006				Bacteria	2GIXF@201174,4CZAR@85004,COG0020@1,COG0020@2	NA|NA|NA	H	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DNDENEON_00956	547043.BIFPSEUDO_03083	7.3e-135	486.5	Bifidobacteriales	recO	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944		ko:K03584	ko03440,map03440				ko00000,ko00001,ko03400				Bacteria	2GK81@201174,4CZCN@85004,COG1381@1,COG1381@2	NA|NA|NA	L	Involved in DNA repair and RecF pathway recombination
DNDENEON_00957	547043.BIFPSEUDO_03084	0.0	1105.9	Bifidobacteriales													Bacteria	2I2GD@201174,4CZUD@85004,COG0657@1,COG0657@2	NA|NA|NA	I	acetylesterase activity
DNDENEON_00958	547043.BIFPSEUDO_03085	5.6e-225	786.6	Bifidobacteriales	ispG	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009055,GO:0009058,GO:0009240,GO:0009987,GO:0016020,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0022900,GO:0030312,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044464,GO:0046429,GO:0046490,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0052592,GO:0055114,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901576	1.17.7.1,1.17.7.3	ko:K03526	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R08689,R10859	RC01486	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS06430,iJN678.gcpE	Bacteria	2GK2S@201174,4CYQB@85004,COG0821@1,COG0821@2	NA|NA|NA	I	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DNDENEON_00959	547043.BIFPSEUDO_03086	8.5e-218	762.7	Bifidobacteriales	dxr	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576	1.1.1.267	ko:K00099	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05688	RC01452	ko00000,ko00001,ko00002,ko01000			iAPECO1_1312.APECO1_1814,iECOK1_1307.ECOK1_0174,iECS88_1305.ECS88_0183,iHN637.CLJU_RS06420,iUMN146_1321.UM146_23670,iUTI89_1310.UTI89_C0188	Bacteria	2GIRV@201174,4CZVC@85004,COG0743@1,COG0743@2	NA|NA|NA	I	Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)
DNDENEON_00960	547043.BIFPSEUDO_03087	3.4e-238	830.9	Bifidobacteriales			2.7.11.1	ko:K08884,ko:K12132					ko00000,ko01000,ko01001				Bacteria	2I2GE@201174,4CZDF@85004,COG3170@1,COG3170@2	NA|NA|NA	NU	Tfp pilus assembly protein FimV
DNDENEON_00962	547043.BIFPSEUDO_03090	6.5e-75	286.6	Bifidobacteriales													Bacteria	2B57P@1,2IFRB@201174,31Y1M@2,4D307@85004	NA|NA|NA	S	Protein of unknown function (DUF3052)
DNDENEON_00963	566552.BIFCAT_00397	1.3e-154	552.4	Bifidobacteriales	lon			ko:K07177	ko02024,map02024				ko00000,ko00001,ko01002				Bacteria	2GMFX@201174,4CYUP@85004,COG3480@1,COG3480@2	NA|NA|NA	T	Belongs to the peptidase S16 family
DNDENEON_00964	547043.BIFPSEUDO_03092	1.7e-285	988.0	Bifidobacteriales													Bacteria	2GJ9K@201174,4CYU7@85004,COG5282@1,COG5282@2	NA|NA|NA	S	Zincin-like metallopeptidase
DNDENEON_00965	547043.BIFPSEUDO_03093	1.6e-282	978.0	Bifidobacteriales	uvrD2	GO:0000287,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0006996,GO:0008094,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0040007,GO:0042623,GO:0043167,GO:0043169,GO:0046872,GO:0051276,GO:0071103,GO:0071840,GO:0140097	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	2GKRW@201174,4CZ3A@85004,COG0210@1,COG0210@2	NA|NA|NA	L	DNA helicase
DNDENEON_00966	547043.BIFPSEUDO_03094	5.2e-268	929.9	Bifidobacteriales	mphA												Bacteria	2I8R6@201174,4CYPR@85004,COG3173@1,COG3173@2	NA|NA|NA	S	Aminoglycoside phosphotransferase
DNDENEON_00967	547043.BIFPSEUDO_03095	3.6e-32	143.7	Bifidobacteriales													Bacteria	2AS45@1,2HZSD@201174,31HGW@2,4D1H9@85004	NA|NA|NA	S	Protein of unknown function (DUF3107)
DNDENEON_00968	547043.BIFPSEUDO_03096	4.5e-174	617.1	Bifidobacteriales	PPA1328		3.1.3.97	ko:K07053			R00188,R11188	RC00078	ko00000,ko01000				Bacteria	2GNAP@201174,4CYQ5@85004,COG0613@1,COG0613@2	NA|NA|NA	S	DNA polymerase alpha chain like domain
DNDENEON_00969	547043.BIFPSEUDO_03097	2.1e-117	428.3	Bifidobacteriales													Bacteria	2GMVK@201174,4CZN1@85004,COG4243@1,COG4243@2	NA|NA|NA	S	Vitamin K epoxide reductase
DNDENEON_00970	547043.BIFPSEUDO_03098	7.8e-171	606.3	Bifidobacteriales	dapF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016020,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.1.1.7	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00527	R02735	RC00302	ko00000,ko00001,ko00002,ko01000			iIT341.HP0566,iLJ478.TM1522	Bacteria	2GKUD@201174,4CYQP@85004,COG0253@1,COG0253@2	NA|NA|NA	E	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine
DNDENEON_00971	547043.BIFPSEUDO_03099	2.2e-145	521.5	Bifidobacteriales	murI	GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008881,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	5.1.1.3	ko:K01776	ko00471,ko01100,map00471,map01100		R00260	RC00302	ko00000,ko00001,ko01000,ko01011				Bacteria	2GN4I@201174,4CZ54@85004,COG0796@1,COG0796@2	NA|NA|NA	M	Provides the (R)-glutamate required for cell wall biosynthesis
DNDENEON_00972	547043.BIFPSEUDO_03102	3.5e-21	106.7	Bifidobacteriales				ko:K07001					ko00000				Bacteria	2I8R7@201174,4CZUH@85004,COG4667@1,COG4667@2	NA|NA|NA	S	Patatin-like phospholipase
DNDENEON_00973	547043.BIFPSEUDO_03101	8.6e-301	1038.9	Bifidobacteriales				ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GIUH@201174,4CZFK@85004,COG4166@1,COG4166@2	NA|NA|NA	E	ABC transporter, substrate-binding protein, family 5
DNDENEON_00974	566552.BIFCAT_00386	4.9e-176	623.6	Bifidobacteriales	iaaA		3.4.19.5,3.5.1.1	ko:K01424,ko:K13051	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110		R00485	RC00010,RC02798	ko00000,ko00001,ko01000,ko01002				Bacteria	2IDMF@201174,4D073@85004,COG1446@1,COG1446@2	NA|NA|NA	E	Asparaginase
DNDENEON_00975	547043.BIFPSEUDO_03102	2.2e-159	568.2	Bifidobacteriales				ko:K07001					ko00000				Bacteria	2I8R7@201174,4CZUH@85004,COG4667@1,COG4667@2	NA|NA|NA	S	Patatin-like phospholipase
DNDENEON_00976	547043.BIFPSEUDO_03104	1.1e-184	652.5	Bifidobacteriales													Bacteria	2GKT0@201174,4D04F@85004,COG0583@1,COG0583@2	NA|NA|NA	K	LysR substrate binding domain protein
DNDENEON_00977	547043.BIFPSEUDO_03105	3.7e-240	837.0	Bifidobacteriales	patB		4.4.1.8	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230		R00782,R01286,R02408,R04941	RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303	ko00000,ko00001,ko01000,ko01007				Bacteria	2GJFQ@201174,4CZFH@85004,COG1168@1,COG1168@2	NA|NA|NA	E	Aminotransferase, class I II
DNDENEON_00978	547043.BIFPSEUDO_03107	6.9e-124	449.9	Bifidobacteriales				ko:K06999					ko00000				Bacteria	2GNIF@201174,4D0TH@85004,COG0400@1,COG0400@2	NA|NA|NA	S	Phospholipase/Carboxylesterase
DNDENEON_00979	698961.CGSMWGv6119V5_00942	6.6e-17	94.4	Bifidobacteriales													Bacteria	2IRSY@201174,4D1CG@85004,COG3657@1,COG3657@2	NA|NA|NA	S	Phage derived protein Gp49-like (DUF891)
DNDENEON_00980	547043.BIFPSEUDO_03112	7.8e-48	196.1	Bifidobacteriales	cas2	GO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360		ko:K09951					ko00000,ko02048				Bacteria	2ISFY@201174,4D16B@85004,COG1343@1,COG1343@2	NA|NA|NA	L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
DNDENEON_00981	547043.BIFPSEUDO_03113	3.3e-197	694.1	Bifidobacteriales	cas1			ko:K15342					ko00000,ko02048,ko03400				Bacteria	2I8M0@201174,4CZYS@85004,COG1518@1,COG1518@2	NA|NA|NA	L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
DNDENEON_00982	547043.BIFPSEUDO_03114	4.5e-131	473.8	Bifidobacteriales	cas4		3.1.12.1	ko:K07464,ko:K15342					ko00000,ko01000,ko02048,ko03400				Bacteria	2IAV6@201174,4D0B8@85004,COG1468@1,COG1468@2	NA|NA|NA	L	Domain of unknown function DUF83
DNDENEON_00983	547043.BIFPSEUDO_03115	4.5e-152	543.9	Bifidobacteriales	csd2			ko:K19115,ko:K19118					ko00000,ko02048				Bacteria	2H4JU@201174,4CZQ5@85004,COG3649@1,COG3649@2	NA|NA|NA	L	CRISPR-associated protein Cas7
DNDENEON_00984	547043.BIFPSEUDO_03116	0.0	1273.5	Bifidobacteriales	csd1		3.5.1.28	ko:K01447,ko:K17733,ko:K19117			R04112	RC00064,RC00141	ko00000,ko01000,ko01002,ko01011,ko02048				Bacteria	2IAY1@201174,4CZ5Z@85004,COG5632@1,COG5632@2	NA|NA|NA	M	CRISPR-associated protein (Cas_Csd1)
DNDENEON_00985	547043.BIFPSEUDO_03117	1.2e-137	495.7	Bifidobacteriales	cas5d			ko:K19119					ko00000,ko02048				Bacteria	2DBAF@1,2IDEP@201174,2Z82V@2,4CYQ7@85004	NA|NA|NA	S	CRISPR-associated protein (Cas_Cas5)
DNDENEON_00986	547043.BIFPSEUDO_03118	0.0	1142.9	Bifidobacteriales	cas3			ko:K07012					ko00000,ko01000,ko02048				Bacteria	2IC92@201174,4D0E8@85004,COG1203@1,COG1203@2	NA|NA|NA	L	DEAD-like helicases superfamily
DNDENEON_00987	547043.BIFPSEUDO_03120	0.0	2244.9	Bifidobacteriales	ileS	GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.5	ko:K01870	ko00970,map00970	M00359,M00360	R03656	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GK9M@201174,4CYT7@85004,COG0060@1,COG0060@2	NA|NA|NA	J	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DNDENEON_00988	547043.BIFPSEUDO_03121	1e-257	895.6	Bifidobacteriales	lacS			ko:K03292,ko:K11104,ko:K16209					ko00000,ko02000	2.A.2,2.A.2.1,2.A.2.2			Bacteria	2HD4Y@201174,4CZRA@85004,COG2211@1,COG2211@2	NA|NA|NA	G	Psort location CytoplasmicMembrane, score 10.00
DNDENEON_00989	547043.BIFPSEUDO_03122	9e-184	649.4	Bifidobacteriales	lacR			ko:K02529					ko00000,ko03000				Bacteria	2H5ZG@201174,4CZ8A@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Transcriptional regulator, LacI family
DNDENEON_00990	566552.BIFCAT_00365	0.0	1293.1	Bifidobacteriales				ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	2GITR@201174,4CZPJ@85004,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter transmembrane region
DNDENEON_00991	547043.BIFPSEUDO_03126	0.0	1110.5	Bifidobacteriales				ko:K06147,ko:K06148					ko00000,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	2GITR@201174,4CZMX@85004,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
DNDENEON_00992	547043.BIFPSEUDO_03127	1.1e-95	356.3	Bifidobacteriales													Bacteria	2IIWT@201174,4D0WT@85004,COG1846@1,COG1846@2	NA|NA|NA	K	MarR family
DNDENEON_00993	566552.BIFCAT_00362	0.0	1466.8	Bifidobacteriales	bglB		3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110		R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000		GH3		Bacteria	2GJ5H@201174,4CZ2P@85004,COG1472@1,COG1472@2	NA|NA|NA	G	Glycosyl hydrolase family 3 N-terminal domain protein
DNDENEON_00994	1680.BADO_1341	2.5e-106	391.3	Bifidobacteriales													Bacteria	2I8DN@201174,4CZXN@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_00995	547043.BIFPSEUDO_03130	2.1e-192	678.3	Bifidobacteriales	glxK	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	2.7.1.165	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130		R08572	RC00002,RC00428	ko00000,ko00001,ko01000				Bacteria	2GKHX@201174,4CZRH@85004,COG1929@1,COG1929@2	NA|NA|NA	G	Belongs to the glycerate kinase type-1 family
DNDENEON_00996	1680.BADO_1344	0.0	1540.0	Bifidobacteriales	bgl2		3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110		R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000		GH3		Bacteria	2GJ5H@201174,4CZT6@85004,COG1472@1,COG1472@2	NA|NA|NA	G	Fibronectin type III-like domain
DNDENEON_00997	1680.BADO_1347	2.3e-108	398.3	Bifidobacteriales													Bacteria	2ICYK@201174,4CYZC@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_00998	547043.BIFPSEUDO_03138	1.1e-239	835.5	Bifidobacteriales			3.2.1.58	ko:K01210	ko00500,map00500		R00308,R03115	RC00467	ko00000,ko00001,ko01000				Bacteria	2I8WH@201174,4CZV7@85004,COG2730@1,COG2730@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DNDENEON_00999	547043.BIFPSEUDO_03139	0.0	1148.3	Bifidobacteriales			3.2.1.37	ko:K01198	ko00520,ko01100,map00520,map01100		R01433	RC00467	ko00000,ko00001,ko01000		GH43		Bacteria	2GIW3@201174,4D037@85004,COG3507@1,COG3507@2	NA|NA|NA	G	Glycosyl hydrolases family 43
DNDENEON_01000	1680.BADO_1350	8.9e-247	859.0	Bifidobacteriales			3.2.1.58	ko:K01210	ko00500,map00500		R00308,R03115	RC00467	ko00000,ko00001,ko01000				Bacteria	2I8WH@201174,4CZV7@85004,COG2730@1,COG2730@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DNDENEON_01001	1680.BADO_1345	4.6e-198	697.2	Bifidobacteriales													Bacteria	2IFA0@201174,4D0EP@85004,COG0477@1,COG2814@2	NA|NA|NA	P	Major Facilitator Superfamily
DNDENEON_01002	46234.ANA_C10985	7e-75	289.3	Nostocales	mcyA			ko:K16130	ko01054,map01054				ko00000,ko00001,ko01008				Bacteria	1G0XE@1117,1HQSR@1161,COG1020@1,COG1020@2	NA|NA|NA	Q	Nodulation protein S (NodS)
DNDENEON_01003	1680.BADO_1346	1.9e-209	734.9	Bifidobacteriales	hsvB		6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502		R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011				Bacteria	2I2GF@201174,4D0FN@85004,COG1181@1,COG1181@2	NA|NA|NA	M	Belongs to the D-alanine--D-alanine ligase family
DNDENEON_01004	78346.BRUM_1573	2e-130	472.6	Bifidobacteriales	ydjE	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K08369					ko00000,ko02000	2.A.1			Bacteria	2GJF6@201174,4CZW6@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01005	1134445.AJJM01000052_gene2080	2.6e-20	105.9	Actinobacteria													Bacteria	2IIA2@201174,COG2977@1,COG2977@2	NA|NA|NA	Q	Belongs to the P-Pant transferase superfamily
DNDENEON_01007	1680.BADO_1351	1.2e-271	941.8	Bifidobacteriales	srfJ1		3.2.1.45	ko:K01201	ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142		R01498	RC00059,RC00451	ko00000,ko00001,ko01000		GH30		Bacteria	2GMWN@201174,4CYYZ@85004,COG5520@1,COG5520@2	NA|NA|NA	G	Glycosyl hydrolase family 30 TIM-barrel domain
DNDENEON_01009	547043.BIFPSEUDO_03147	4e-224	783.9	Bifidobacteriales													Bacteria	2GJZG@201174,4CZ93@85004,COG2211@1,COG2211@2	NA|NA|NA	G	Transporter major facilitator family protein
DNDENEON_01010	566552.BIFCAT_00344	2.3e-105	388.3	Bifidobacteriales													Bacteria	2ICY9@201174,4D0I5@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_01011	566552.BIFCAT_00342	0.0	1377.5	Bifidobacteriales	lacZ3		3.2.1.23	ko:K01190,ko:K12308	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100		R01105,R01678,R03355,R04783,R06114	RC00049,RC00452	ko00000,ko00001,ko01000				Bacteria	2GK4P@201174,4CZKE@85004,COG1874@1,COG1874@2	NA|NA|NA	G	Beta-galactosidase trimerisation domain
DNDENEON_01012	547043.BIFPSEUDO_03151	4.2e-115	420.6	Bifidobacteriales													Bacteria	2ICYK@201174,4CYZC@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_01013	547043.BIFPSEUDO_03152	3.2e-255	887.1	Bifidobacteriales	gshA		6.3.2.2	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00894,R10993	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJPI@201174,4CYZP@85004,COG3572@1,COG3572@2	NA|NA|NA	H	Glutamate-cysteine ligase family 2(GCS2)
DNDENEON_01014	547043.BIFPSEUDO_03153	0.0	2576.6	Bifidobacteriales	hgdC												Bacteria	2I1VH@201174,4CZ6Y@85004,COG1924@1,COG1924@2,COG3580@1,COG3580@2,COG3581@1,COG3581@2	NA|NA|NA	I	CoA enzyme activase uncharacterised domain (DUF2229)
DNDENEON_01015	547043.BIFPSEUDO_03154	3.9e-156	557.4	Bifidobacteriales	hgdC												Bacteria	2HI6K@201174,4CZN6@85004,COG1924@1,COG1924@2	NA|NA|NA	I	BadF/BadG/BcrA/BcrD ATPase family
DNDENEON_01016	547043.BIFPSEUDO_03155	1.6e-139	501.9	Bifidobacteriales	nrdG	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008998,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0031250,GO:0032991,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046385,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576	1.97.1.4	ko:K04068			R04710		ko00000,ko01000			iE2348C_1286.E2348C_4563	Bacteria	2H0HA@201174,4CYSC@85004,COG0602@1,COG0602@2	NA|NA|NA	O	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DNDENEON_01017	547043.BIFPSEUDO_03156	0.0	1657.1	Bifidobacteriales	nrdD	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008998,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016491,GO:0016725,GO:0016728,GO:0017076,GO:0018130,GO:0019001,GO:0019103,GO:0019438,GO:0019637,GO:0019692,GO:0030554,GO:0031250,GO:0032552,GO:0032553,GO:0032554,GO:0032555,GO:0032556,GO:0032558,GO:0032559,GO:0032560,GO:0032564,GO:0032567,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046385,GO:0046483,GO:0046872,GO:0046914,GO:0051065,GO:0055086,GO:0055114,GO:0071704,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576	1.1.98.6	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R11633,R11634,R11635,R11636	RC00613	ko00000,ko00001,ko00002,ko01000			iECIAI39_1322.ECIAI39_4713,iPC815.YPO3454	Bacteria	2GMGA@201174,4CYV3@85004,COG1328@1,COG1328@2	NA|NA|NA	F	Anaerobic ribonucleoside-triphosphate reductase
DNDENEON_01018	547043.BIFPSEUDO_03157	8.9e-245	852.4	Bifidobacteriales	xseA	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	3.1.11.6	ko:K03601	ko03430,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJAS@201174,4CZU4@85004,COG1570@1,COG1570@2	NA|NA|NA	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
DNDENEON_01019	566552.BIFCAT_00334	1.5e-40	171.8	Bifidobacteriales	xseB	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494	3.1.11.6	ko:K03602	ko03430,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	2GR0U@201174,4D18C@85004,COG1722@1,COG1722@2	NA|NA|NA	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
DNDENEON_01021	566552.BIFCAT_00332	2.5e-195	688.0	Bifidobacteriales				ko:K18353	ko01502,ko02020,map01502,map02020	M00651			ko00000,ko00001,ko00002,ko01504				Bacteria	2I2GX@201174,4CYTX@85004,COG3568@1,COG3568@2	NA|NA|NA	S	Endonuclease/Exonuclease/phosphatase family
DNDENEON_01022	1295642.H839_12359	3.4e-29	136.3	Geobacillus				ko:K07496					ko00000				Bacteria	1UZNC@1239,1WE50@129337,4HF5F@91061,COG0675@1,COG0675@2	NA|NA|NA	L	COG0675 Transposase and inactivated derivatives
DNDENEON_01023	553217.ENHAE0001_0350	3.7e-36	157.9	Moraxellaceae	VY92_01845			ko:K07491					ko00000				Bacteria	1RDD7@1224,1S4R2@1236,3NN6R@468,COG1943@1,COG1943@2	NA|NA|NA	L	Transposase IS200 like
DNDENEON_01025	78346.BRUM_1572	1.1e-98	366.3	Bifidobacteriales	tmp1												Bacteria	28XY7@1,2GN31@201174,2ZJU4@2,4CZQG@85004	NA|NA|NA	S	Domain of unknown function (DUF4391)
DNDENEON_01026	547043.BIFPSEUDO_03163	3e-168	597.8	Bifidobacteriales	ppx	GO:0003674,GO:0003824,GO:0006793,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0044237	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230		R03409	RC00002	ko00000,ko00001,ko01000				Bacteria	2GMME@201174,4CYW8@85004,COG0248@1,COG0248@2	NA|NA|NA	FP	Ppx/GppA phosphatase family
DNDENEON_01027	566552.BIFCAT_00328	2.1e-232	811.2	Bifidobacteriales	aspB												Bacteria	2GJ7R@201174,4CZQP@85004,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase class-V
DNDENEON_01028	566552.BIFCAT_00327	1.9e-70	271.6	Bifidobacteriales	vsr			ko:K07458					ko00000,ko01000,ko03400				Bacteria	2IKPY@201174,4D0R6@85004,COG3727@1,COG3727@2	NA|NA|NA	L	May nick specific sequences that contain T G mispairs resulting from m5C-deamination
DNDENEON_01029	547043.BIFPSEUDO_03168	8.1e-185	652.9	Bifidobacteriales	afr_2												Bacteria	2GKW0@201174,4CYXG@85004,COG0673@1,COG0673@2	NA|NA|NA	S	Oxidoreductase family, NAD-binding Rossmann fold
DNDENEON_01030	547043.BIFPSEUDO_03169	0.0	1172.5	Bifidobacteriales	helD	GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1902494	3.6.4.12	ko:K03658					ko00000,ko01000,ko03400				Bacteria	2IA1B@201174,4D066@85004,COG0210@1,COG0210@2	NA|NA|NA	L	Psort location Cytoplasmic, score 8.87
DNDENEON_01031	547043.BIFPSEUDO_03170	3.4e-21	106.7	Bifidobacteriales	nudG	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	3.6.1.55,3.6.1.65	ko:K03574,ko:K08320					ko00000,ko01000,ko03400			iE2348C_1286.E2348C_1887,iECP_1309.ECP_1705,iLF82_1304.LF82_1533,iNRG857_1313.NRG857_08815,iPC815.YPO2167,iSSON_1240.SSON_1397	Bacteria	2I2GY@201174,4D0UJ@85004,COG0494@1,COG0494@2	NA|NA|NA	L	NUDIX domain
DNDENEON_01032	547043.BIFPSEUDO_03172	3.2e-222	777.3	Bifidobacteriales				ko:K07496					ko00000				Bacteria	2GM6K@201174,4D14G@85004,COG0675@1,COG0675@2	NA|NA|NA	L	Psort location Cytoplasmic, score 8.87
DNDENEON_01033	547043.BIFPSEUDO_03173	4.1e-71	273.9	Bifidobacteriales				ko:K07491					ko00000				Bacteria	2IMQ2@201174,4D1F4@85004,COG1943@1,COG1943@2	NA|NA|NA	L	Transposase IS200 like
DNDENEON_01034	1680.BADO_1669	9.3e-302	1042.3	Bifidobacteriales													Bacteria	2GJ4Y@201174,4CZNN@85004,COG1061@1,COG1061@2,COG3886@1,COG3886@2	NA|NA|NA	KL	Domain of unknown function (DUF3427)
DNDENEON_01035	547043.BIFPSEUDO_03177	3.4e-76	290.8	Bifidobacteriales													Bacteria	29SSD@1,2IJ1J@201174,30DYB@2,4D0SG@85004	NA|NA|NA		
DNDENEON_01036	547043.BIFPSEUDO_03178	7.5e-71	273.1	Bifidobacteriales													Bacteria	2IFD2@201174,4D0RX@85004,COG3428@1,COG3428@2	NA|NA|NA	S	Bacterial PH domain
DNDENEON_01037	547043.BIFPSEUDO_03180	4.8e-246	856.7	Bifidobacteriales													Bacteria	2GJ39@201174,4CZC0@85004,COG4279@1,COG4279@2	NA|NA|NA	S	zinc finger
DNDENEON_01038	547043.BIFPSEUDO_04453	4e-112	410.6	Bifidobacteriales	dcd	GO:0003674,GO:0003824,GO:0004170,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006244,GO:0006253,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008829,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009166,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0015949,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0033973,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046065,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576	3.5.4.13	ko:K01494	ko00240,ko01100,map00240,map01100	M00053	R00568,R02325	RC00074	ko00000,ko00001,ko00002,ko01000			iPC815.YPO1525	Bacteria	2GKQQ@201174,4CZEB@85004,COG0717@1,COG0717@2	NA|NA|NA	F	Belongs to the dCTP deaminase family
DNDENEON_01039	547043.BIFPSEUDO_04454	1.2e-154	552.4	Bifidobacteriales	ypfH	GO:0003674,GO:0003824,GO:0016787,GO:0016788,GO:0052689		ko:K06999					ko00000				Bacteria	2I5NR@201174,4CZJQ@85004,COG0400@1,COG0400@2	NA|NA|NA	S	Phospholipase/Carboxylesterase
DNDENEON_01040	547043.BIFPSEUDO_04456	0.0	1204.9	Bifidobacteriales	yjcE	GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006873,GO:0006885,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015081,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015385,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0019725,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030004,GO:0030641,GO:0034220,GO:0035725,GO:0042592,GO:0044464,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071804,GO:0071805,GO:0071944,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098719,GO:0098739,GO:0098771,GO:0099516,GO:0099587,GO:1902600		ko:K03316					ko00000	2.A.36			Bacteria	2GIUT@201174,4CZC4@85004,COG0025@1,COG0025@2	NA|NA|NA	P	Sodium/hydrogen exchanger family
DNDENEON_01041	547043.BIFPSEUDO_04457	1e-45	189.1	Bifidobacteriales	tadA		3.5.4.1,3.5.4.33,3.8.1.5,6.3.4.19	ko:K01485,ko:K01563,ko:K04075,ko:K11991	ko00240,ko00330,ko00361,ko00625,ko01100,ko01120,map00240,map00330,map00361,map00625,map01100,map01120		R00974,R01411,R02922,R05284,R05367,R05368,R05369,R05370,R07669,R07670,R09597,R10223	RC00074,RC00477,RC00514,RC00809,RC01317,RC01340,RC01341,RC02013,RC02633,RC02634	ko00000,ko00001,ko01000,ko03016				Bacteria	2IM3Z@201174,4D0V0@85004,COG0590@1,COG0590@2	NA|NA|NA	FJ	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
DNDENEON_01042	547043.BIFPSEUDO_04459	0.0	1585.1	Bifidobacteriales			3.2.1.22	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603		R01101,R01103,R01104,R01194,R01329,R02926,R03634,R04019,R04470,R05549,R05961,R06091	RC00049,RC00059,RC00451	ko00000,ko00001,ko01000				Bacteria	2GJJ1@201174,4CZJB@85004,COG3345@1,COG3345@2	NA|NA|NA	G	Glycosyl hydrolase family 36 N-terminal domain
DNDENEON_01043	547043.BIFPSEUDO_04460	1.5e-230	805.1	Bifidobacteriales	nagC	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141		ko:K02565					ko00000,ko03000				Bacteria	2GMBH@201174,4CZK4@85004,COG1846@1,COG1846@2,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
DNDENEON_01044	547043.BIFPSEUDO_04461	1.5e-244	851.7	Bifidobacteriales	msmE7			ko:K10117	ko02010,map02010	M00196			ko00000,ko00001,ko00002,ko02000	3.A.1.1.28			Bacteria	2GN9T@201174,4CZ4V@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_01045	547043.BIFPSEUDO_04462	6.6e-157	560.1	Bifidobacteriales				ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GKJI@201174,4CZPG@85004,COG1175@1,COG1175@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_01046	566552.BIFCAT_01128	2.6e-155	554.7	Bifidobacteriales				ko:K10119	ko02010,map02010	M00196			ko00000,ko00001,ko00002,ko02000	3.A.1.1.28			Bacteria	2GNQW@201174,4D02Q@85004,COG0395@1,COG0395@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_01047	547043.BIFPSEUDO_04464	0.0	1271.1	Bifidobacteriales			3.2.1.10	ko:K01182	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00801,R01718,R01791,R06199	RC00028,RC00059,RC00077,RC00451	ko00000,ko00001,ko01000		GH13		Bacteria	2GKS4@201174,4CZT7@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Alpha amylase, catalytic domain protein
DNDENEON_01048	547043.BIFPSEUDO_04465	4.1e-234	817.0	Bifidobacteriales	tdcB	GO:0003674,GO:0003824,GO:0003941,GO:0004793,GO:0004794,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006565,GO:0006566,GO:0006567,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016597,GO:0016829,GO:0016830,GO:0016832,GO:0016840,GO:0016841,GO:0019752,GO:0019842,GO:0030170,GO:0031406,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJAG@201174,4CYW0@85004,COG1171@1,COG1171@2	NA|NA|NA	E	Pyridoxal-phosphate dependent enzyme
DNDENEON_01049	547043.BIFPSEUDO_04466	3.1e-144	517.7	Bifidobacteriales	cobB2			ko:K12410					ko00000,ko01000				Bacteria	2GJI3@201174,4CYUW@85004,COG0846@1,COG0846@2	NA|NA|NA	K	Sir2 family
DNDENEON_01050	547043.BIFPSEUDO_04468	1.7e-172	612.1	Bifidobacteriales													Bacteria	2GNKU@201174,4CZVA@85004,COG0657@1,COG0657@2	NA|NA|NA	I	alpha/beta hydrolase fold
DNDENEON_01051	547043.BIFPSEUDO_02544	6.2e-41	172.9	Bifidobacteriales													Bacteria	2EG1H@1,2IQTR@201174,339TH@2,4D16E@85004	NA|NA|NA		
DNDENEON_01052	547043.BIFPSEUDO_02543	3.1e-217	760.8	Bifidobacteriales	serC	GO:0001505,GO:0003674,GO:0003824,GO:0004760,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005886,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006807,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019265,GO:0019752,GO:0040007,GO:0042133,GO:0042136,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.6.1.52	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	M00020,M00124	R04173,R05085	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	2GKYK@201174,4CZ94@85004,COG1932@1,COG1932@2	NA|NA|NA	E	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
DNDENEON_01053	547043.BIFPSEUDO_02542	1.6e-166	592.0	Bifidobacteriales	usp		3.5.1.28	ko:K21471,ko:K22409					ko00000,ko01000,ko01002,ko01011		CBM50		Bacteria	2GP2A@201174,4CYXV@85004,COG3942@1,COG3942@2	NA|NA|NA	S	CHAP domain
DNDENEON_01054	547043.BIFPSEUDO_02540	1.3e-79	302.8	Bifidobacteriales				ko:K21471					ko00000,ko01000,ko01002,ko01011				Bacteria	2GJX7@201174,4D01Q@85004,COG0791@1,COG0791@2	NA|NA|NA	M	NlpC/P60 family
DNDENEON_01055	547043.BIFPSEUDO_02539	1.3e-190	672.2	Bifidobacteriales													Bacteria	2GMFE@201174,4CZ6V@85004,COG0589@1,COG0589@2	NA|NA|NA	T	Universal stress protein family
DNDENEON_01056	547043.BIFPSEUDO_02538	1e-72	279.3	Bifidobacteriales	attW	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944											Bacteria	2IIK7@201174,4D0PB@85004,COG1765@1,COG1765@2	NA|NA|NA	O	OsmC-like protein
DNDENEON_01057	547043.BIFPSEUDO_02537	3.8e-181	640.6	Bifidobacteriales	thyA	GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009125,GO:0009129,GO:0009130,GO:0009131,GO:0009157,GO:0009159,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009178,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0032259,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042083,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046073,GO:0046078,GO:0046079,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	2.1.1.45	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	M00053	R02101	RC00219,RC00332	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKY0@201174,4CZQ3@85004,COG0207@1,COG0207@2	NA|NA|NA	F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
DNDENEON_01058	547043.BIFPSEUDO_02536	6.4e-130	469.9	Bifidobacteriales	folA	GO:0000166,GO:0003674,GO:0003824,GO:0004146,GO:0005488,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070401,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	1.5.1.3	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	M00126,M00840	R00936,R00937,R00939,R00940,R02235,R02236,R11765	RC00109,RC00110,RC00158	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv2763c	Bacteria	2IM1S@201174,4CZM1@85004,COG0262@1,COG0262@2	NA|NA|NA	H	dihydrofolate reductase
DNDENEON_01059	401473.BDP_0529	1.6e-85	322.0	Bifidobacteriales	ptpA	GO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576	3.1.3.48	ko:K01104,ko:K20945	ko05111,map05111				ko00000,ko00001,ko01000				Bacteria	2IM0Q@201174,4CZWM@85004,COG0394@1,COG0394@2	NA|NA|NA	T	low molecular weight
DNDENEON_01061	547043.BIFPSEUDO_02532	9e-200	702.6	Bifidobacteriales	galE		5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000				Bacteria	2GMCW@201174,4CZDB@85004,COG1087@1,COG1087@2	NA|NA|NA	M	Belongs to the NAD(P)-dependent epimerase dehydratase family
DNDENEON_01062	547043.BIFPSEUDO_02531	9.8e-160	569.3	Bifidobacteriales	trmB	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0040007,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234	2.1.1.297,2.1.1.33,2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15	ko:K02493,ko:K02527,ko:K03439	ko00540,ko01100,map00540,map01100	M00060,M00080	R04658,R05074,R09763,R10806	RC00003,RC00009,RC00077,RC00247,RC03279	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005,ko03012,ko03016		GT30		Bacteria	2GJ8R@201174,4CZKF@85004,COG0220@1,COG0220@2	NA|NA|NA	J	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
DNDENEON_01066	547043.BIFPSEUDO_02526	0.0	1416.4	Bifidobacteriales			5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000				Bacteria	2ICHN@201174,4CYZ7@85004,COG0451@1,COG0451@2	NA|NA|NA	GM	ADP-glyceromanno-heptose 6-epimerase activity
DNDENEON_01067	547043.BIFPSEUDO_02525	9.7e-161	572.8	Bifidobacteriales													Bacteria	28H6W@1,2ICGP@201174,2Z7J7@2,4CZUA@85004	NA|NA|NA		
DNDENEON_01068	547043.BIFPSEUDO_02524	0.0	1260.0	Bifidobacteriales													Bacteria	2IERA@201174,4D00K@85004,COG4878@1,COG4878@2	NA|NA|NA	S	Uncharacterised protein conserved in bacteria (DUF2194)
DNDENEON_01069	547043.BIFPSEUDO_02523	2.4e-283	980.7	Bifidobacteriales	pelF			ko:K21011	ko02025,map02025				ko00000,ko00001,ko01003		GT4		Bacteria	2GKEA@201174,4CZ5G@85004,COG0438@1,COG0438@2	NA|NA|NA	M	Domain of unknown function (DUF3492)
DNDENEON_01070	216816.GS08_07955	1.8e-276	958.0	Bifidobacteriales	pelG			ko:K21012	ko02025,map02025				ko00000,ko00001				Bacteria	2IE76@201174,4CZ7D@85004,COG4267@1,COG4267@2	NA|NA|NA	S	Putative exopolysaccharide Exporter (EPS-E)
DNDENEON_01071	547043.BIFPSEUDO_02521	6.5e-310	1069.3	Bifidobacteriales	cotH			ko:K06330					ko00000				Bacteria	2ID5Z@201174,4D02F@85004,COG5337@1,COG5337@2	NA|NA|NA	M	CotH kinase protein
DNDENEON_01072	547043.BIFPSEUDO_02520	2.2e-159	568.2	Bifidobacteriales													Bacteria	2HZIY@201174,4D0MA@85004,COG5036@1,COG5036@2	NA|NA|NA	P	VTC domain
DNDENEON_01073	547043.BIFPSEUDO_02519	2.2e-111	408.3	Bifidobacteriales													Bacteria	2HZFV@201174,4D0AX@85004,COG1285@1,COG1285@2	NA|NA|NA	S	Domain of unknown function (DUF4956)
DNDENEON_01074	547043.BIFPSEUDO_02518	0.0	1480.3	Bifidobacteriales	yliE	GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111											Bacteria	2I2FR@201174,4D09B@85004,COG2199@1,COG2199@2,COG2200@1,COG2200@2	NA|NA|NA	T	Putative diguanylate phosphodiesterase
DNDENEON_01075	547043.BIFPSEUDO_02517	1.8e-204	718.4	Bifidobacteriales	fucO	GO:0003674,GO:0003824,GO:0004022,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006004,GO:0006066,GO:0008150,GO:0008152,GO:0008198,GO:0008912,GO:0009056,GO:0016052,GO:0016491,GO:0016614,GO:0016616,GO:0019299,GO:0019301,GO:0019317,GO:0019318,GO:0019320,GO:0019751,GO:0034311,GO:0034313,GO:0042354,GO:0042355,GO:0042844,GO:0042846,GO:0043167,GO:0043169,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046174,GO:0046365,GO:0046872,GO:0046914,GO:0051143,GO:0055114,GO:0071704,GO:1901575,GO:1901615,GO:1901616	1.1.1.1,1.1.1.77,1.1.99.37,1.2.98.1	ko:K00048,ko:K13954,ko:K17067	ko00010,ko00071,ko00350,ko00625,ko00626,ko00630,ko00640,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00010,map00071,map00350,map00625,map00626,map00630,map00640,map00680,map01100,map01110,map01120,map01130,map01200,map01220		R00614,R00623,R00754,R01781,R02257,R04880,R05233,R05234,R06917,R06927	RC00034,RC00050,RC00087,RC00088,RC00099,RC00116,RC00188,RC00649	ko00000,ko00001,ko01000			iAF1260.b2799,iECDH1ME8569_1439.ECDH1ME8569_2709,iECSE_1348.ECSE_3059,iECW_1372.ECW_m3009,iEKO11_1354.EKO11_0969,iEcDH1_1363.EcDH1_0889,iEcE24377_1341.EcE24377A_3104,iEcHS_1320.EcHS_A2943,iJO1366.b2799,iJR904.b2799,iUMNK88_1353.UMNK88_3484,iWFL_1372.ECW_m3009,iY75_1357.Y75_RS14565	Bacteria	2I2FD@201174,4CZ71@85004,COG1454@1,COG1454@2	NA|NA|NA	C	Iron-containing alcohol dehydrogenase
DNDENEON_01076	547043.BIFPSEUDO_02515	2.1e-179	634.8	Bifidobacteriales			3.4.14.13	ko:K20742					ko00000,ko01000,ko01002				Bacteria	2GNPU@201174,4CZ7E@85004,COG1215@1,COG1215@2	NA|NA|NA	M	Glycosyltransferase like family 2
DNDENEON_01077	547043.BIFPSEUDO_02514	5.3e-236	823.5	Bifidobacteriales													Bacteria	2GN4Y@201174,4CZD1@85004,COG0628@1,COG0628@2	NA|NA|NA	S	AI-2E family transporter
DNDENEON_01078	547043.BIFPSEUDO_02513	6.3e-232	809.7	Bifidobacteriales	epsG			ko:K00786					ko00000,ko01000				Bacteria	2HZ9V@201174,4CZ5J@85004,COG1215@1,COG1215@2	NA|NA|NA	M	Glycosyl transferase family 21
DNDENEON_01079	547043.BIFPSEUDO_02512	1.1e-232	812.4	Bifidobacteriales	dacB		3.4.16.4	ko:K07259	ko00550,map00550				ko00000,ko00001,ko01000,ko01002,ko01011				Bacteria	2GJPH@201174,4CYXQ@85004,COG2027@1,COG2027@2	NA|NA|NA	M	D-Ala-D-Ala carboxypeptidase 3 (S13) family
DNDENEON_01080	566552.BIFCAT_01322	1.5e-200	705.3	Bifidobacteriales	tilS		2.4.2.8,6.3.4.19	ko:K00760,ko:K04075,ko:K15780	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110		R00190,R01132,R01229,R02142,R08237,R08238,R08245,R09597	RC00063,RC00122,RC02633,RC02634	ko00000,ko00001,ko01000,ko03016				Bacteria	2GJR4@201174,4CYSY@85004,COG0037@1,COG0037@2	NA|NA|NA	J	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
DNDENEON_01081	547043.BIFPSEUDO_02510	3.9e-99	367.5	Bifidobacteriales	hpt		2.4.2.8,6.3.4.19	ko:K00760,ko:K04075,ko:K15780	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110		R00190,R01132,R01229,R02142,R08237,R08238,R08245,R09597	RC00063,RC00122,RC02633,RC02634	ko00000,ko00001,ko01000,ko03016				Bacteria	2GMDZ@201174,4CZNJ@85004,COG0634@1,COG0634@2	NA|NA|NA	F	Belongs to the purine pyrimidine phosphoribosyltransferase family
DNDENEON_01082	547043.BIFPSEUDO_02509	0.0	1315.4	Bifidobacteriales	ftsH	GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575		ko:K03798		M00742			ko00000,ko00002,ko01000,ko01002,ko03110				Bacteria	2GJ4Q@201174,4CZ6U@85004,COG0465@1,COG0465@2	NA|NA|NA	O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DNDENEON_01083	547043.BIFPSEUDO_02508	9.6e-115	419.5	Bifidobacteriales	folE	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006082,GO:0006139,GO:0006575,GO:0006725,GO:0006729,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008616,GO:0009058,GO:0009108,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0019752,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042455,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901657,GO:1901659	2.7.6.3,3.5.4.16	ko:K00950,ko:K01495	ko00790,ko01100,map00790,map01100	M00126,M00841,M00842,M00843	R00428,R03503,R04639,R05046,R05048	RC00002,RC00017,RC00263,RC00294,RC00323,RC00945,RC01188	ko00000,ko00001,ko00002,ko01000			iIT341.HP0928	Bacteria	2GP2P@201174,4CZ5S@85004,COG0302@1,COG0302@2	NA|NA|NA	H	GTP cyclohydrolase
DNDENEON_01084	566552.BIFCAT_01326	5.8e-155	553.5	Bifidobacteriales	folP		1.13.11.81,2.5.1.15,2.7.6.3,4.1.2.25,5.1.99.8	ko:K00796,ko:K00950,ko:K01633	ko00790,ko01100,map00790,map01100	M00126,M00840,M00841	R03066,R03067,R03503,R03504,R11037,R11073	RC00002,RC00017,RC00121,RC00721,RC00842,RC00943,RC01479,RC03333,RC03334	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJDQ@201174,4CZWW@85004,COG0294@1,COG0294@2	NA|NA|NA	H	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DNDENEON_01085	547043.BIFPSEUDO_02506	4.1e-273	946.8	Bifidobacteriales	folK	GO:0000287,GO:0003674,GO:0003824,GO:0003848,GO:0005488,GO:0008150,GO:0016740,GO:0016772,GO:0016778,GO:0040007,GO:0043167,GO:0043169,GO:0046872	1.13.11.81,2.5.1.15,2.7.6.3,3.5.4.16,3.5.4.39,4.1.2.25,5.1.99.8	ko:K00796,ko:K00950,ko:K01495,ko:K01633,ko:K13940,ko:K17488	ko00790,ko01100,map00790,map01100	M00126,M00840,M00841,M00842,M00843	R00428,R03066,R03067,R03503,R03504,R04639,R05046,R05048,R10348,R11037,R11073	RC00002,RC00017,RC00121,RC00263,RC00294,RC00323,RC00721,RC00842,RC00943,RC00945,RC01188,RC01479,RC02504,RC03131,RC03333,RC03334	ko00000,ko00001,ko00002,ko01000			iECDH1ME8569_1439.ECDH1ME8569_0136,iEcDH1_1363.EcDH1_3460,iJN746.PP_4698,iLJ478.TM0041,iSBO_1134.SBO_0131	Bacteria	2H3G6@201174,4D0EJ@85004,COG0801@1,COG0801@2,COG1539@1,COG1539@2	NA|NA|NA	H	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DNDENEON_01086	547043.BIFPSEUDO_02505	3.1e-93	347.8	Bifidobacteriales													Bacteria	2DRQG@1,2HZP6@201174,33CMQ@2,4D14M@85004	NA|NA|NA	S	Protein of unknown function (DUF3180)
DNDENEON_01087	547043.BIFPSEUDO_02504	8.5e-165	586.3	Bifidobacteriales	tesB			ko:K10805	ko01040,map01040				ko00000,ko00001,ko01000,ko01004				Bacteria	2GJ1B@201174,4CZRC@85004,COG1946@1,COG1946@2	NA|NA|NA	I	Thioesterase-like superfamily
DNDENEON_01088	566552.BIFCAT_01330	0.0	1122.8	Bifidobacteriales	yjjK	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944											Bacteria	2GKBQ@201174,4CYWH@85004,COG0488@1,COG0488@2	NA|NA|NA	S	ATP-binding cassette protein, ChvD family
DNDENEON_01089	1437610.BREU_1647	4.2e-180	637.1	Bifidobacteriales													Bacteria	2GK3A@201174,4D06I@85004,COG1680@1,COG1680@2	NA|NA|NA	V	Beta-lactamase
DNDENEON_01090	1437610.BREU_1646	9.3e-74	282.7	Bifidobacteriales	def2		3.5.1.31,3.5.1.88	ko:K01450,ko:K01462	ko00270,ko00630,map00270,map00630		R00653	RC00165,RC00323	ko00000,ko00001,ko01000				Bacteria	2IJQ5@201174,4D14S@85004,COG0242@1,COG0242@2	NA|NA|NA	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins
DNDENEON_01091	566552.BIFCAT_01333	8.1e-146	523.1	Bifidobacteriales	ribD	GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360	1.1.1.193,3.5.4.26	ko:K01498,ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1624,iLJ478.TM1828	Bacteria	2IFMN@201174,4D0JA@85004,COG0117@1,COG0117@2	NA|NA|NA	H	Cytidine and deoxycytidylate deaminase zinc-binding region
DNDENEON_01093	566552.BIFCAT_01334	4.2e-77	293.9	Bifidobacteriales	gmk		1.1.1.23,2.7.4.8	ko:K00013,ko:K00942	ko00230,ko00340,ko01100,ko01110,ko01230,map00230,map00340,map01100,map01110,map01230	M00026,M00050	R00332,R01158,R01163,R02090,R03012	RC00002,RC00099,RC00242,RC00463	ko00000,ko00001,ko00002,ko01000				Bacteria	2GN40@201174,4CZPZ@85004,COG2852@1,COG2852@2	NA|NA|NA	S	Protein conserved in bacteria
DNDENEON_01094	566552.BIFCAT_01335	2.2e-295	1020.8	Bifidobacteriales													Bacteria	2GJVW@201174,4CZQ4@85004,COG1574@1,COG1574@2	NA|NA|NA	S	Amidohydrolase family
DNDENEON_01095	566552.BIFCAT_01336	8.3e-251	872.5	Bifidobacteriales	metY		2.5.1.49	ko:K01740	ko00270,ko01100,map00270,map01100		R01287,R04859	RC00020,RC02821,RC02848	ko00000,ko00001,ko01000				Bacteria	2I2EB@201174,4CYSA@85004,COG2873@1,COG2873@2	NA|NA|NA	H	Psort location Cytoplasmic, score 9.98
DNDENEON_01096	1680.BADO_0427	4.3e-266	923.3	Bifidobacteriales	xylA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009045,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046365,GO:0071704,GO:1901575	5.3.1.5	ko:K01805	ko00040,ko00051,ko01100,map00040,map00051,map01100		R00878,R01432	RC00376,RC00516	ko00000,ko00001,ko01000			iECO26_1355.ECO26_5036,iHN637.CLJU_RS08960,iPC815.YPO4038	Bacteria	2GJCA@201174,4CZK8@85004,COG2115@1,COG2115@2	NA|NA|NA	G	Belongs to the xylose isomerase family
DNDENEON_01097	547043.BIFPSEUDO_02475	0.0	1169.5	Bifidobacteriales			3.2.1.37,3.2.1.55	ko:K01198,ko:K01209	ko00520,ko01100,map00520,map01100		R01433,R01762	RC00467	ko00000,ko00001,ko01000		GH43,GH51		Bacteria	2GIW3@201174,4CZY8@85004,COG3507@1,COG3507@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 43 family
DNDENEON_01098	518635.BIFANG_03771	5.3e-184	650.2	Bifidobacteriales				ko:K02529,ko:K17640					ko00000,ko03000				Bacteria	2GJRG@201174,4CZI0@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Bacterial regulatory proteins, lacI family
DNDENEON_01099	566552.BIFCAT_01342	8e-230	802.7	Bifidobacteriales	msmE			ko:K02027,ko:K10117	ko02010,map02010	M00196,M00207			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.28			Bacteria	2GP9H@201174,4D01H@85004,COG1653@1,COG1653@2	NA|NA|NA	G	ABC transporter periplasmic binding protein YcjN precursor K02027
DNDENEON_01100	547043.BIFPSEUDO_02472	1.3e-185	655.6	Bifidobacteriales	MA20_14025			ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GKJI@201174,4CZQU@85004,COG1175@1,COG1175@2	NA|NA|NA	U	Binding-protein-dependent transport system inner membrane component
DNDENEON_01101	566552.BIFCAT_01344	2.3e-159	568.2	Bifidobacteriales	MA20_14020			ko:K10119	ko02010,map02010	M00196			ko00000,ko00001,ko00002,ko02000	3.A.1.1.28			Bacteria	2GNQW@201174,4CZTW@85004,COG0395@1,COG0395@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_01102	547043.BIFPSEUDO_02470	0.0	1173.7	Bifidobacteriales	xynB		3.2.1.37	ko:K01198	ko00520,ko01100,map00520,map01100		R01433	RC00467	ko00000,ko00001,ko01000		GH43		Bacteria	2GIW3@201174,4CZ5I@85004,COG3507@1,COG3507@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 43 family
DNDENEON_01103	547043.BIFPSEUDO_02469	0.0	1393.6	Bifidobacteriales			3.1.1.53	ko:K05970					ko00000,ko01000				Bacteria	2ICNG@201174,4CZQA@85004,COG3250@1,COG3250@2	NA|NA|NA	G	Glycosyl hydrolase family 2, sugar binding domain protein
DNDENEON_01104	1680.BADO_0435	9.7e-09	65.1	Bifidobacteriales				ko:K03929					ko00000,ko01000		CE10		Bacteria	2GJCN@201174,4D02Y@85004,COG2272@1,COG2272@2	NA|NA|NA	I	Belongs to the type-B carboxylesterase lipase family
DNDENEON_01105	547043.BIFPSEUDO_02467	2.1e-106	391.7	Bifidobacteriales	lacA		2.3.1.79	ko:K00661					ko00000,ko01000				Bacteria	2GNUB@201174,4CZ5K@85004,COG0110@1,COG0110@2	NA|NA|NA	S	Bacterial transferase hexapeptide repeat protein
DNDENEON_01106	566552.BIFCAT_01354	1.3e-287	995.0	Bifidobacteriales	xylB		1.1.1.57,2.7.1.17	ko:K00040,ko:K00854,ko:K19168	ko00040,ko01100,map00040,map01100	M00014,M00061	R01639,R02454	RC00002,RC00085,RC00538	ko00000,ko00001,ko00002,ko01000,ko02048				Bacteria	2GJDZ@201174,4CZH0@85004,COG1070@1,COG1070@2	NA|NA|NA	G	FGGY family of carbohydrate kinases, C-terminal domain
DNDENEON_01107	547043.BIFPSEUDO_02465	1.2e-225	788.9	Bifidobacteriales	xylR												Bacteria	2GJIE@201174,4CZPD@85004,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
DNDENEON_01109	547043.BIFPSEUDO_02463	1.5e-35	154.8	Bifidobacteriales	rpmE	GO:0008150,GO:0040007		ko:K02909	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IQ4I@201174,4D17F@85004,COG0254@1,COG0254@2	NA|NA|NA	J	Binds the 23S rRNA
DNDENEON_01110	547043.BIFPSEUDO_02461	1.4e-190	672.2	Bifidobacteriales	prfA			ko:K02835					ko00000,ko03012				Bacteria	2GJWG@201174,4CYX4@85004,COG0216@1,COG0216@2	NA|NA|NA	J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DNDENEON_01111	547043.BIFPSEUDO_02460	3.2e-172	610.9	Bifidobacteriales	prmC		2.1.1.297	ko:K02493			R10806	RC00003,RC03279	ko00000,ko01000,ko03012				Bacteria	2GMH1@201174,4CZB3@85004,COG2890@1,COG2890@2	NA|NA|NA	J	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
DNDENEON_01112	547043.BIFPSEUDO_02459	1.7e-218	765.0	Bifidobacteriales	livK			ko:K01999	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	2GM00@201174,4CZYU@85004,COG0683@1,COG0683@2	NA|NA|NA	E	Receptor family ligand binding region
DNDENEON_01113	547043.BIFPSEUDO_02458	9.5e-156	556.2	Bifidobacteriales				ko:K01997	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	2GMAY@201174,4CZQ6@85004,COG0559@1,COG0559@2	NA|NA|NA	U	Belongs to the binding-protein-dependent transport system permease family
DNDENEON_01114	547043.BIFPSEUDO_02457	1.5e-195	688.7	Bifidobacteriales	livM			ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	2GJB3@201174,4CYTE@85004,COG4177@1,COG4177@2	NA|NA|NA	U	Belongs to the binding-protein-dependent transport system permease family
DNDENEON_01115	547043.BIFPSEUDO_02456	4.8e-151	540.4	Bifidobacteriales				ko:K01995	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	2GMEE@201174,4CZBX@85004,COG0411@1,COG0411@2	NA|NA|NA	E	Branched-chain amino acid ATP-binding cassette transporter
DNDENEON_01116	547043.BIFPSEUDO_02455	1.9e-124	451.8	Bifidobacteriales	livF			ko:K01996	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	2GKSQ@201174,4CZE0@85004,COG0410@1,COG0410@2	NA|NA|NA	E	ATPases associated with a variety of cellular activities
DNDENEON_01117	547043.BIFPSEUDO_02454	2e-115	421.8	Bifidobacteriales	ywlC	GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363	2.7.7.87	ko:K07566			R10463	RC00745	ko00000,ko01000,ko03009,ko03016				Bacteria	2GK2X@201174,4CYVA@85004,COG0009@1,COG0009@2	NA|NA|NA	J	Belongs to the SUA5 family
DNDENEON_01118	547043.BIFPSEUDO_02453	4.5e-195	687.2	Bifidobacteriales	tagO	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0030145,GO:0034645,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0045229,GO:0046872,GO:0046914,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:1901576	2.7.8.33,2.7.8.35	ko:K02851			R08856	RC00002	ko00000,ko01000,ko01003,ko01005				Bacteria	2GIT7@201174,4CZ4P@85004,COG0472@1,COG0472@2	NA|NA|NA	M	Glycosyl transferase family 4
DNDENEON_01119	547043.BIFPSEUDO_02452	2.7e-288	997.3	Bifidobacteriales	guaB	GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006183,GO:0006195,GO:0006204,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009125,GO:0009126,GO:0009127,GO:0009128,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009154,GO:0009156,GO:0009158,GO:0009161,GO:0009163,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009169,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009261,GO:0009987,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0030312,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046037,GO:0046039,GO:0046040,GO:0046128,GO:0046129,GO:0046390,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0072523,GO:0090407,GO:0097292,GO:0097293,GO:1901068,GO:1901070,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901659	1.1.1.205	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	M00050	R01130,R08240	RC00143,RC02207	ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GITZ@201174,4CZ2S@85004,COG0516@1,COG0516@2,COG0517@1,COG0517@2	NA|NA|NA	F	Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
DNDENEON_01120	547043.BIFPSEUDO_02451	2.2e-122	444.9	Bifidobacteriales	orn	GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360		ko:K13288	ko03008,map03008				ko00000,ko00001,ko01000,ko03009,ko03019				Bacteria	2GJR7@201174,4CYZY@85004,COG1949@1,COG1949@2	NA|NA|NA	L	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DNDENEON_01121	547043.BIFPSEUDO_02450	4.6e-160	570.5	Bifidobacteriales	supH												Bacteria	2HZBZ@201174,4CZNM@85004,COG0561@1,COG0561@2	NA|NA|NA	S	Sucrose-6F-phosphate phosphohydrolase
DNDENEON_01122	547043.BIFPSEUDO_02449	3e-270	937.2	Bifidobacteriales	recD2		3.6.4.12	ko:K15255					ko00000,ko01000,ko03029,ko03032				Bacteria	2HFY1@201174,4CZ0C@85004,COG0507@1,COG0507@2	NA|NA|NA	L	PIF1-like helicase
DNDENEON_01123	547043.BIFPSEUDO_02448	0.0	1229.5	Bifidobacteriales	proS	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GJ9G@201174,4CZ6E@85004,COG0442@1,COG0442@2	NA|NA|NA	J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
DNDENEON_01124	547043.BIFPSEUDO_02446	6.8e-98	363.2	Bifidobacteriales				ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440				ko00000,ko00001,ko03029,ko03032,ko03400				Bacteria	2GQIQ@201174,4D17E@85004,COG0629@1,COG0629@2	NA|NA|NA	L	Single-strand binding protein family
DNDENEON_01125	547043.BIFPSEUDO_02445	0.0	1414.1	Bifidobacteriales	pepO		3.4.24.71	ko:K01415,ko:K07386					ko00000,ko01000,ko01002,ko04147				Bacteria	2GNJY@201174,4CYVU@85004,COG3590@1,COG3590@2	NA|NA|NA	O	Peptidase family M13
DNDENEON_01126	547043.BIFPSEUDO_02444	1.6e-151	542.0	Bifidobacteriales	map		3.4.11.18	ko:K01265					ko00000,ko01000,ko01002				Bacteria	2GKKB@201174,4CZAA@85004,COG0024@1,COG0024@2	NA|NA|NA	E	Methionine aminopeptidase
DNDENEON_01127	547043.BIFPSEUDO_02442	3e-248	864.0	Bifidobacteriales	gltA	GO:0003674,GO:0003824,GO:0004108,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0019752,GO:0036440,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046912,GO:0055114,GO:0071704,GO:0071944,GO:0072350	2.3.3.1	ko:K01647	ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351	RC00004,RC00067	br01601,ko00000,ko00001,ko00002,ko01000			iIT341.HP0026,iYL1228.KPN_00727	Bacteria	2GJ7E@201174,4CZ2J@85004,COG0372@1,COG0372@2	NA|NA|NA	C	Citrate synthase, C-terminal domain
DNDENEON_01128	547043.BIFPSEUDO_02441	2.2e-142	511.9	Bifidobacteriales	dapD	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0008666,GO:0016020,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016749,GO:0030312,GO:0031402,GO:0031420,GO:0040007,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0048037,GO:0050662,GO:0071944	2.3.1.117	ko:K00674	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R04365	RC00004,RC01136	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv1201c	Bacteria	2GIZ9@201174,4CYVT@85004,COG2171@1,COG2171@2	NA|NA|NA	E	Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2- amino-6-oxopimelate using succinyl-CoA
DNDENEON_01129	547043.BIFPSEUDO_02440	1.2e-82	312.4	Bifidobacteriales	rlmH		2.1.1.177	ko:K00783					ko00000,ko01000,ko03009				Bacteria	2IJE0@201174,4D0P5@85004,COG1576@1,COG1576@2	NA|NA|NA	J	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DNDENEON_01130	547043.BIFPSEUDO_02438	1.1e-190	672.5	Bifidobacteriales	prfB	GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02836					ko00000,ko03012				Bacteria	2GJ0F@201174,4CZJX@85004,COG1186@1,COG1186@2	NA|NA|NA	J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DNDENEON_01131	547043.BIFPSEUDO_02437	2.3e-168	598.6	Bifidobacteriales	ftsE	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008144,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0017076,GO:0019897,GO:0019898,GO:0030554,GO:0031234,GO:0032153,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363		ko:K09811,ko:K09812	ko02010,map02010	M00256			ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140			Bacteria	2GJE1@201174,4CYYQ@85004,COG2884@1,COG2884@2	NA|NA|NA	D	Cell division ATP-binding protein FtsE
DNDENEON_01132	547043.BIFPSEUDO_02436	3.4e-161	574.3	Bifidobacteriales	ftsX	GO:0000910,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008356,GO:0009274,GO:0009276,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0016020,GO:0016021,GO:0016043,GO:0019221,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030312,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0032153,GO:0032506,GO:0034097,GO:0040007,GO:0042173,GO:0042221,GO:0043937,GO:0043938,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051301,GO:0051716,GO:0065007,GO:0070098,GO:0070297,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:0071944,GO:0090529,GO:1902531		ko:K09811,ko:K09812	ko02010,map02010	M00256			ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140			Bacteria	2GJMA@201174,4CZSQ@85004,COG2177@1,COG2177@2	NA|NA|NA	D	Part of the ABC transporter FtsEX involved in cellular division
DNDENEON_01133	547043.BIFPSEUDO_02435	2.9e-148	531.9	Bifidobacteriales	usp		3.5.1.28	ko:K21471,ko:K22409					ko00000,ko01000,ko01002,ko01011		CBM50		Bacteria	2GZG8@201174,4CYQJ@85004,COG3942@1,COG3942@2	NA|NA|NA	D	CHAP domain protein
DNDENEON_01134	547043.BIFPSEUDO_02434	2e-77	295.0	Bifidobacteriales	smpB	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070930,GO:0071704,GO:0097159,GO:1901363,GO:1901564		ko:K03664					ko00000				Bacteria	2GJX1@201174,4CZG4@85004,COG0691@1,COG0691@2	NA|NA|NA	J	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
DNDENEON_01135	547043.BIFPSEUDO_02432	1.5e-156	558.9	Bifidobacteriales	pknD			ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GJQW@201174,4CZ6H@85004,COG0834@1,COG0834@2	NA|NA|NA	ET	ABC transporter, substrate-binding protein, family 3
DNDENEON_01136	547043.BIFPSEUDO_02431	8.9e-32	143.3	Bifidobacteriales	pknD			ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GJQW@201174,4CZ6H@85004,COG0834@1,COG0834@2	NA|NA|NA	ET	ABC transporter, substrate-binding protein, family 3
DNDENEON_01137	566552.BIFCAT_01394	6.4e-128	463.8	Bifidobacteriales	pknD			ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GJQW@201174,4CZ6H@85004,COG0834@1,COG0834@2	NA|NA|NA	ET	ABC transporter, substrate-binding protein, family 3
DNDENEON_01138	547043.BIFPSEUDO_02428	2.2e-126	458.8	Bifidobacteriales	yecS			ko:K02029,ko:K10009	ko02010,map02010	M00234,M00236			ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.10,3.A.1.3.14			Bacteria	2GJJ9@201174,4CYSN@85004,COG0765@1,COG0765@2	NA|NA|NA	E	Binding-protein-dependent transport system inner membrane component
DNDENEON_01139	547043.BIFPSEUDO_02427	8.5e-145	519.6	Bifidobacteriales	tcyC		3.6.3.21	ko:K02028		M00236			ko00000,ko00002,ko01000,ko02000	3.A.1.3			Bacteria	2GIZW@201174,4CZSB@85004,COG1126@1,COG1126@2	NA|NA|NA	E	ATPases associated with a variety of cellular activities
DNDENEON_01140	547043.BIFPSEUDO_02426	0.0	1246.9	Bifidobacteriales	glmS	GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016020,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.6.1.16	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931		R00768	RC00010,RC00163,RC02752	ko00000,ko00001,ko01000,ko01002			iNJ661.Rv3436c,iSB619.SA_RS11245,iYO844.BSU01780	Bacteria	2GKH0@201174,4CZ1G@85004,COG0449@1,COG0449@2	NA|NA|NA	M	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
DNDENEON_01141	566552.BIFCAT_01402	1.1e-146	525.8	Bifidobacteriales	rluA		5.4.99.28,5.4.99.29	ko:K06177					ko00000,ko01000,ko03009,ko03016				Bacteria	2GJ2Z@201174,4CZB2@85004,COG0564@1,COG0564@2	NA|NA|NA	J	RNA pseudouridylate synthase
DNDENEON_01142	547043.BIFPSEUDO_02424	5.8e-228	796.6	Bifidobacteriales	sstT	GO:0003333,GO:0003674,GO:0005215,GO:0005283,GO:0005295,GO:0005310,GO:0005342,GO:0005343,GO:0005416,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006835,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015077,GO:0015081,GO:0015171,GO:0015175,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015370,GO:0015672,GO:0015711,GO:0015804,GO:0015849,GO:0016020,GO:0016021,GO:0017153,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032329,GO:0034220,GO:0035725,GO:0044425,GO:0044464,GO:0046873,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1903825,GO:1905039		ko:K07862					ko00000,ko02000	2.A.23.4		iAF1260.b3089,iBWG_1329.BWG_2799,iECDH10B_1368.ECDH10B_3265,iECDH1ME8569_1439.ECDH1ME8569_2984,iECH74115_1262.ECH74115_4404,iECIAI1_1343.ECIAI1_3235,iECO103_1326.ECO103_3834,iECO111_1330.ECO111_3911,iECO26_1355.ECO26_4192,iECP_1309.ECP_3180,iECSE_1348.ECSE_3370,iECSP_1301.ECSP_4063,iECUMN_1333.ECUMN_3573,iECW_1372.ECW_m3356,iECs_1301.ECs3971,iEKO11_1354.EKO11_0630,iETEC_1333.ETEC_3359,iEcDH1_1363.EcDH1_0612,iEcE24377_1341.EcE24377A_3557,iG2583_1286.G2583_3813,iJO1366.b3089,iJR904.b3089,iSFV_1184.SFV_3130,iSSON_1240.SSON_3242,iUMNK88_1353.UMNK88_3845,iWFL_1372.ECW_m3356,iY75_1357.Y75_RS16050,iYL1228.KPN_03517,iZ_1308.Z4442	Bacteria	2I861@201174,4D300@85004,COG3633@1,COG3633@2	NA|NA|NA	E	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
DNDENEON_01143	566552.BIFCAT_01741	0.0	1393.6	Bifidobacteriales	lacZ5		3.2.1.23	ko:K12308	ko00052,map00052		R01105	RC00452	ko00000,ko00001,ko01000				Bacteria	2GMDT@201174,4CZ38@85004,COG1874@1,COG1874@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_01144	547043.BIFPSEUDO_02417	1.7e-273	948.0	Bifidobacteriales				ko:K02027		M00207			ko00000,ko00002,ko02000	3.A.1.1			Bacteria	2GJIP@201174,4CYRE@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_01145	547043.BIFPSEUDO_02416	4.8e-122	443.7	Bifidobacteriales													Bacteria	2GPYG@201174,4D19D@85004,COG0745@1,COG0745@2	NA|NA|NA	K	Transcriptional regulatory protein, C terminal
DNDENEON_01146	547043.BIFPSEUDO_02415	8.8e-142	509.6	Bifidobacteriales													Bacteria	2INZZ@201174,4D13R@85004,COG0642@1,COG2205@2	NA|NA|NA	T	His Kinase A (phosphoacceptor) domain
DNDENEON_01147	547043.BIFPSEUDO_02414	7e-82	309.7	Bifidobacteriales													Bacteria	2GU90@201174,4D1HM@85004,COG3631@1,COG3631@2	NA|NA|NA	S	SnoaL-like domain
DNDENEON_01148	547043.BIFPSEUDO_02413	2e-143	515.0	Bifidobacteriales	coaX	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.1.33	ko:K03525	ko00770,ko01100,map00770,map01100	M00120	R02971,R03018,R04391	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1986	Bacteria	2GMRQ@201174,4CZQS@85004,COG1521@1,COG1521@2	NA|NA|NA	H	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
DNDENEON_01149	547043.BIFPSEUDO_02412	7e-242	842.8	Bifidobacteriales	coaBC		4.1.1.36,6.3.2.5	ko:K01598,ko:K13038,ko:K21977	ko00770,ko01100,map00770,map01100	M00120	R03269,R04231	RC00064,RC00090,RC00822	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJGJ@201174,4D0GJ@85004,COG0452@1,COG0452@2	NA|NA|NA	H	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DNDENEON_01150	547043.BIFPSEUDO_02411	8.7e-293	1012.3	Bifidobacteriales				ko:K02035	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GJ4B@201174,4CYWF@85004,COG0747@1,COG0747@2	NA|NA|NA	E	ABC transporter, substrate-binding protein, family 5
DNDENEON_01151	547043.BIFPSEUDO_02410	1.3e-166	592.4	Bifidobacteriales				ko:K02033	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GK0Z@201174,4CYST@85004,COG0601@1,COG0601@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_01152	547043.BIFPSEUDO_02409	1.2e-139	502.7	Bifidobacteriales				ko:K02034,ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25			Bacteria	2GNQ5@201174,4CZ84@85004,COG1173@1,COG1173@2	NA|NA|NA	EP	Binding-protein-dependent transport system inner membrane component
DNDENEON_01153	547043.BIFPSEUDO_02408	1.4e-136	492.3	Bifidobacteriales	oppD			ko:K02031	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GIXV@201174,4CZ3U@85004,COG0444@1,COG0444@2	NA|NA|NA	EP	oligopeptide transport protein of the ABC superfamily, ATP-binding component
DNDENEON_01154	547043.BIFPSEUDO_02407	6.8e-139	500.0	Bifidobacteriales	sapF			ko:K02032,ko:K19230	ko01503,ko02010,ko02024,map01503,map02010,map02024	M00239,M00739			ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.5			Bacteria	2GP46@201174,4CYXD@85004,COG4608@1,COG4608@2	NA|NA|NA	E	ATPases associated with a variety of cellular activities
DNDENEON_01155	547043.BIFPSEUDO_02406	7.6e-191	672.9	Bifidobacteriales	cbs	GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008144,GO:0016020,GO:0019842,GO:0030170,GO:0030312,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0071944,GO:0097159,GO:1901363	2.5.1.47,4.2.1.22	ko:K01697,ko:K01738	ko00260,ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021,M00035,M00338	R00891,R00897,R01290,R03601,R04859,R04942	RC00020,RC00056,RC00069,RC00256,RC00489,RC01246,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000				Bacteria	2GIXE@201174,4CYQ4@85004,COG0031@1,COG0031@2	NA|NA|NA	E	Pyridoxal-phosphate dependent enzyme
DNDENEON_01156	547043.BIFPSEUDO_02405	2.2e-218	764.6	Bifidobacteriales	metB	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009092,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0017144,GO:0019279,GO:0019343,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071265,GO:0071266,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.5.1.48,4.4.1.1,4.4.1.8	ko:K01739,ko:K01758,ko:K01760	ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017,M00338	R00782,R00999,R01001,R01286,R01288,R02408,R02508,R03217,R03260,R04770,R04930,R04941,R04944,R04945,R04946,R09366	RC00020,RC00056,RC00069,RC00348,RC00382,RC00420,RC00488,RC00710,RC01209,RC01210,RC01245,RC02303,RC02848,RC02866	ko00000,ko00001,ko00002,ko01000,ko04147			iNJ661.Rv1079	Bacteria	2GJ5S@201174,4CYY2@85004,COG0626@1,COG0626@2	NA|NA|NA	E	Cys/Met metabolism PLP-dependent enzyme
DNDENEON_01157	547043.BIFPSEUDO_02403	0.0	1614.4	Bifidobacteriales	macB_2			ko:K02003,ko:K02004,ko:K05685	ko02010,map02010	M00258,M00709			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.122.1,3.A.1.122.12			Bacteria	2GK3I@201174,4D0AY@85004,COG0577@1,COG0577@2,COG1136@1,COG1136@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
DNDENEON_01158	547043.BIFPSEUDO_02402	0.0	1251.5	Bifidobacteriales	recQ		3.6.4.12	ko:K03654	ko03018,map03018				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJSS@201174,4CZ0I@85004,COG0514@1,COG0514@2	NA|NA|NA	L	ATP-dependent DNA helicase RecQ
DNDENEON_01159	547043.BIFPSEUDO_02401	3.9e-92	344.0	Bifidobacteriales	luxS	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0007154,GO:0007267,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009116,GO:0009119,GO:0009372,GO:0009987,GO:0010699,GO:0016053,GO:0016829,GO:0016846,GO:0017144,GO:0019284,GO:0019752,GO:0023052,GO:0033353,GO:0034641,GO:0042278,GO:0043094,GO:0043102,GO:0043436,GO:0043768,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0046128,GO:0046394,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0051704,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657	4.4.1.21	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	M00609	R01291	RC00069,RC01929	ko00000,ko00001,ko00002,ko01000			iECIAI39_1322.ECIAI39_2877,iPC815.YPO3300	Bacteria	2GJVF@201174,4CYZ4@85004,COG1854@1,COG1854@2	NA|NA|NA	H	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
DNDENEON_01160	566552.BIFCAT_01758	2.7e-102	377.9	Bifidobacteriales	cysE		2.3.1.178	ko:K06718	ko00260,ko01100,ko01120,map00260,map01100,map01120	M00033	R06978	RC00004,RC00096	ko00000,ko00001,ko00002,ko01000				Bacteria	2HBE2@201174,4CZTR@85004,COG1670@1,COG1670@2	NA|NA|NA	J	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DNDENEON_01161	547043.BIFPSEUDO_02398	3.1e-270	937.2	Bifidobacteriales	yhdG			ko:K03294					ko00000	2.A.3.2			Bacteria	2GJ75@201174,4CYZA@85004,COG0531@1,COG0531@2	NA|NA|NA	E	aromatic amino acid transport protein AroP K03293
DNDENEON_01162	547043.BIFPSEUDO_02397	2e-307	1060.8	Bifidobacteriales	alr	GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0006022,GO:0006023,GO:0006024,GO:0006082,GO:0006520,GO:0006522,GO:0006523,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008784,GO:0009058,GO:0009059,GO:0009078,GO:0009079,GO:0009252,GO:0009273,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0019842,GO:0030170,GO:0030203,GO:0030632,GO:0034645,GO:0036094,GO:0036361,GO:0040007,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044281,GO:0044283,GO:0046144,GO:0046145,GO:0046394,GO:0046416,GO:0046436,GO:0046437,GO:0047661,GO:0048037,GO:0050662,GO:0070279,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.1.1.1	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502		R00401	RC00285	ko00000,ko00001,ko01000,ko01011			iEC55989_1330.EC55989_1285,iECIAI39_1322.ECIAI39_1880,iECO103_1326.ECO103_1292,iECO26_1355.ECO26_1703,iECSE_1348.ECSE_1238,iECUMN_1333.ECUMN_1479,iECW_1372.ECW_m1275,iEKO11_1354.EKO11_2666,iEcE24377_1341.EcE24377A_1335,iPC815.YPO0321,iSBO_1134.SBO_4064,iSbBS512_1146.SbBS512_E4542,iWFL_1372.ECW_m1275,iYL1228.KPN_02308,iYL1228.KPN_04440	Bacteria	2GM2Y@201174,4CZ2Q@85004,COG0787@1,COG0787@2	NA|NA|NA	M	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DNDENEON_01163	547043.BIFPSEUDO_02396	0.0	1355.9	Bifidobacteriales	dnaG	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944		ko:K02316	ko03030,map03030				ko00000,ko00001,ko01000,ko03032				Bacteria	2GJFX@201174,4CYZG@85004,COG0358@1,COG0358@2	NA|NA|NA	L	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
DNDENEON_01164	566552.BIFCAT_01763	5.2e-215	753.4	Bifidobacteriales	ybiR	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944											Bacteria	2GP6U@201174,4CZ37@85004,COG1055@1,COG1055@2	NA|NA|NA	P	Citrate transporter
DNDENEON_01166	566552.BIFCAT_01765	0.0	1310.8	Bifidobacteriales	tetP			ko:K02355					ko00000,ko03012,ko03029				Bacteria	2GJ64@201174,4CZM5@85004,COG0480@1,COG0480@2	NA|NA|NA	J	Elongation factor G, domain IV
DNDENEON_01170	547043.BIFPSEUDO_02388	2e-101	375.2	Bifidobacteriales				ko:K03830					ko00000,ko01000				Bacteria	2IB9K@201174,4D0M3@85004,COG0454@1,COG0456@2	NA|NA|NA	K	acetyltransferase
DNDENEON_01171	566552.BIFCAT_01772	1.1e-108	399.4	Bifidobacteriales	papP			ko:K02029		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GM0I@201174,4CZ8E@85004,COG0765@1,COG0765@2	NA|NA|NA	E	Binding-protein-dependent transport system inner membrane component
DNDENEON_01172	547043.BIFPSEUDO_02385	1.4e-119	435.6	Bifidobacteriales				ko:K02029,ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GN44@201174,4CZG7@85004,COG0765@1,COG0765@2	NA|NA|NA	E	Binding-protein-dependent transport system inner membrane component
DNDENEON_01173	547043.BIFPSEUDO_02384	1.5e-152	545.4	Bifidobacteriales	glnQ		3.6.3.21	ko:K02028		M00236			ko00000,ko00002,ko01000,ko02000	3.A.1.3			Bacteria	2H1ZM@201174,4CZTK@85004,COG1126@1,COG1126@2	NA|NA|NA	E	ATP binding protein of ABC transporter for glutamate aspartate K02028
DNDENEON_01174	547043.BIFPSEUDO_02383	6.9e-143	513.5	Bifidobacteriales	cjaA			ko:K02030		M00236			ko00000,ko00002,ko02000	3.A.1.3			Bacteria	2GJH8@201174,4CZAC@85004,COG0834@1,COG0834@2	NA|NA|NA	ET	Bacterial periplasmic substrate-binding proteins
DNDENEON_01175	547043.BIFPSEUDO_02381	1.3e-198	698.7	Bifidobacteriales	panE1		1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000				Bacteria	2HZCX@201174,4CZN4@85004,COG1893@1,COG1893@2	NA|NA|NA	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DNDENEON_01176	547043.BIFPSEUDO_02380	1.5e-155	555.4	Bifidobacteriales	metQ			ko:K02073	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	2GMNI@201174,4CZAI@85004,COG1464@1,COG1464@2	NA|NA|NA	M	NLPA lipoprotein
DNDENEON_01177	547043.BIFPSEUDO_02379	6.5e-193	679.9	Bifidobacteriales	metN			ko:K02071	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	2GJ9P@201174,4CZYI@85004,COG1135@1,COG1135@2	NA|NA|NA	P	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DNDENEON_01178	547043.BIFPSEUDO_02378	4.9e-98	364.0	Bifidobacteriales	metI			ko:K02072	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	2GY65@201174,4CZP5@85004,COG2011@1,COG2011@2	NA|NA|NA	P	Psort location CytoplasmicMembrane, score 9.99
DNDENEON_01179	547043.BIFPSEUDO_02377	1.4e-220	771.9	Bifidobacteriales	mtnE	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009987,GO:0016740,GO:0016769,GO:0016999,GO:0017000,GO:0017144,GO:0044237,GO:0044249	2.6.1.83	ko:K08969,ko:K10206,ko:K19549	ko00270,ko00300,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map01100,map01110,map01130,map01230	M00034,M00527,M00787	R07396,R07613,R11068	RC00006,RC01847	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	2GJ7R@201174,4CZCF@85004,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase class I and II
DNDENEON_01180	1680.BADO_0519	4.3e-13	80.1	Bifidobacteriales	metC		2.5.1.48,4.4.1.8	ko:K01739,ko:K01760	ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017	R00782,R00999,R01286,R01288,R02408,R02508,R03217,R03260,R04941,R04944,R04945,R04946	RC00020,RC00056,RC00069,RC00382,RC00420,RC00488,RC00710,RC01245,RC02303,RC02848,RC02866	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ5S@201174,4CZKK@85004,COG0626@1,COG0626@2	NA|NA|NA	E	Cys/Met metabolism PLP-dependent enzyme
DNDENEON_01181	547043.BIFPSEUDO_02375	2.4e-43	181.0	Bifidobacteriales	metC		2.5.1.48,4.4.1.8	ko:K01739,ko:K01760	ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017	R00782,R00999,R01286,R01288,R02408,R02508,R03217,R03260,R04941,R04944,R04945,R04946	RC00020,RC00056,RC00069,RC00382,RC00420,RC00488,RC00710,RC01245,RC02303,RC02848,RC02866	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ5S@201174,4CZKK@85004,COG0626@1,COG0626@2	NA|NA|NA	E	Cys/Met metabolism PLP-dependent enzyme
DNDENEON_01182	547043.BIFPSEUDO_02373	1.4e-43	181.8	Bifidobacteriales	XAC3035			ko:K06191					ko00000				Bacteria	2HZQB@201174,4D18H@85004,COG0695@1,COG0695@2	NA|NA|NA	O	Glutaredoxin
DNDENEON_01183	547043.BIFPSEUDO_02371	3.1e-127	461.5	Bifidobacteriales	XK27_08050												Bacteria	2GJ1U@201174,4CYTU@85004,COG0330@1,COG0330@2	NA|NA|NA	O	prohibitin homologues
DNDENEON_01184	78345.BMERY_1643	3.4e-14	84.0	Bifidobacteriales				ko:K07133					ko00000				Bacteria	2HJ52@201174,4D2TQ@85004,COG1373@1,COG1373@2	NA|NA|NA	S	Domain of unknown function (DUF4143)
DNDENEON_01185	547043.BIFPSEUDO_02370	1.1e-73	282.7	Bifidobacteriales													Bacteria	2AU97@1,2IJXF@201174,31JWK@2,4D0W5@85004	NA|NA|NA		
DNDENEON_01186	547043.BIFPSEUDO_02369	9.6e-135	486.1	Bifidobacteriales				ko:K02003		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GJN6@201174,4D2SJ@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
DNDENEON_01187	547043.BIFPSEUDO_02368	4.4e-147	527.7	Bifidobacteriales													Bacteria	2GP6I@201174,4D013@85004,COG1361@1,COG1361@2	NA|NA|NA	M	Conserved repeat domain
DNDENEON_01188	566552.BIFCAT_01798	7.5e-256	889.4	Bifidobacteriales	macB_8			ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GIRW@201174,4CZMQ@85004,COG0577@1,COG0577@2	NA|NA|NA	V	MacB-like periplasmic core domain
DNDENEON_01189	547043.BIFPSEUDO_02366	0.0	1240.7	Bifidobacteriales	dxs	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0008661,GO:0009058,GO:0009240,GO:0009987,GO:0016740,GO:0016744,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0019842,GO:0030145,GO:0030975,GO:0032787,GO:0036094,GO:0040007,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901363,GO:1901576,GO:1901681	2.2.1.7	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	M00096	R05636	RC00032	ko00000,ko00001,ko00002,ko01000				Bacteria	2GMFA@201174,4CZ2M@85004,COG1154@1,COG1154@2	NA|NA|NA	H	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DNDENEON_01190	547043.BIFPSEUDO_02365	1.2e-183	649.0	Bifidobacteriales	adh3												Bacteria	2GMHR@201174,4D00X@85004,COG0604@1,COG0604@2	NA|NA|NA	C	Zinc-binding dehydrogenase
DNDENEON_01191	547043.BIFPSEUDO_02364	1.1e-84	319.3	Bifidobacteriales	purE	GO:0003674,GO:0003824,GO:0004638,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034023,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	5.4.99.18	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07405	RC01947	ko00000,ko00001,ko00002,ko01000			iETEC_1333.ETEC_0575,iJN746.PP_5336,iPC815.YPO3076,iUTI89_1310.UTI89_C0551	Bacteria	2IFFD@201174,4CYQZ@85004,COG0041@1,COG0041@2	NA|NA|NA	F	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DNDENEON_01192	547043.BIFPSEUDO_02363	1.3e-226	792.0	Bifidobacteriales	purK		6.3.4.18	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07404	RC01927	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJCU@201174,4CYWP@85004,COG0026@1,COG0026@2	NA|NA|NA	F	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DNDENEON_01193	547043.BIFPSEUDO_02362	8.8e-89	332.8	Bifidobacteriales	zur	GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141		ko:K02076,ko:K03711,ko:K09823	ko02024,map02024				ko00000,ko00001,ko03000				Bacteria	2IKS3@201174,4D0XG@85004,COG0735@1,COG0735@2	NA|NA|NA	P	Belongs to the Fur family
DNDENEON_01194	547043.BIFPSEUDO_02361	0.0	1364.0	Bifidobacteriales	XK27_08315												Bacteria	2HVID@201174,4CZ6J@85004,COG1368@1,COG1368@2	NA|NA|NA	M	Psort location CytoplasmicMembrane, score 9.26
DNDENEON_01195	547043.BIFPSEUDO_02360	2.5e-203	714.5	Bifidobacteriales	psuK	GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050225	2.7.1.15,2.7.1.45,2.7.1.83	ko:K00852,ko:K00874,ko:K16328	ko00030,ko00240,ko01100,ko01120,ko01200,map00030,map00240,map01100,map01120,map01200	M00061,M00308,M00631	R01051,R01541,R02750,R03315	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2HZA1@201174,4CZ7T@85004,COG0524@1,COG0524@2,COG1522@1,COG1522@2	NA|NA|NA	G	pfkB family carbohydrate kinase
DNDENEON_01196	547043.BIFPSEUDO_02359	2.7e-188	664.5	Bifidobacteriales	yeiI	GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050225	2.7.1.15,2.7.1.45,2.7.1.83	ko:K00852,ko:K00874,ko:K16328	ko00030,ko00240,ko01100,ko01120,ko01200,map00030,map00240,map01100,map01120,map01200	M00061,M00308,M00631	R01051,R01541,R02750,R03315	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2HZA1@201174,4CZ7T@85004,COG0524@1,COG0524@2	NA|NA|NA	G	pfkB family carbohydrate kinase
DNDENEON_01197	547043.BIFPSEUDO_02358	3.3e-129	467.6	Bifidobacteriales	trpF		5.3.1.24	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03509	RC00945	ko00000,ko00001,ko00002,ko01000				Bacteria	2IHPP@201174,4D17S@85004,COG0135@1,COG0135@2	NA|NA|NA	E	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
DNDENEON_01198	547043.BIFPSEUDO_02357	1.1e-214	752.3	Bifidobacteriales			1.1.1.1	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220		R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000				Bacteria	2I2FD@201174,4D24P@85004,COG1454@1,COG1454@2	NA|NA|NA	C	Iron-containing alcohol dehydrogenase
DNDENEON_01199	547043.BIFPSEUDO_02356	1.1e-183	649.0	Bifidobacteriales	rihB		3.2.2.1	ko:K01239,ko:K01250	ko00230,ko00760,ko01100,map00230,map00760,map01100		R01245,R01273,R01677,R01770,R02143	RC00033,RC00063,RC00122,RC00318,RC00485	ko00000,ko00001,ko01000				Bacteria	2GP6N@201174,4CZIN@85004,COG1957@1,COG1957@2	NA|NA|NA	F	Inosine-uridine preferring nucleoside hydrolase
DNDENEON_01200	547043.BIFPSEUDO_02355	1.6e-247	861.7	Bifidobacteriales													Bacteria	2H8UD@201174,4CZ16@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01201	547043.BIFPSEUDO_02354	4.8e-235	820.1	Bifidobacteriales	purD		6.3.4.13	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04144	RC00090,RC00166	ko00000,ko00001,ko00002,ko01000			iSB619.SA_RS05245,iYO844.BSU06530	Bacteria	2I2F5@201174,4CZ3I@85004,COG0151@1,COG0151@2	NA|NA|NA	F	Belongs to the GARS family
DNDENEON_01202	547043.BIFPSEUDO_02353	8.3e-185	652.9	Bifidobacteriales	purM	GO:0003674,GO:0003824,GO:0004641,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.3.1,6.3.4.13	ko:K01933,ko:K11788	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04144,R04208	RC00090,RC00166,RC01100	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1844,iECSF_1327.ECSF_2340	Bacteria	2GJNY@201174,4CZ3K@85004,COG0150@1,COG0150@2	NA|NA|NA	F	Phosphoribosylformylglycinamidine cyclo-ligase
DNDENEON_01203	1435051.BMOU_1969	1e-284	985.3	Bifidobacteriales	purF	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	2.4.2.14	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048	R01072	RC00010,RC02724,RC02752	ko00000,ko00001,ko00002,ko01000,ko01002			iSB619.SA_RS05225	Bacteria	2GK6I@201174,4CZ89@85004,COG0034@1,COG0034@2	NA|NA|NA	F	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DNDENEON_01204	547043.BIFPSEUDO_02350	2.3e-311	1074.7	Bifidobacteriales	umuC		2.7.7.7	ko:K02346,ko:K03502,ko:K14161					ko00000,ko01000,ko03400				Bacteria	2GQX7@201174,4CZ0D@85004,COG0389@1,COG0389@2	NA|NA|NA	L	DNA-damage repair protein (DNA polymerase IV) K00961
DNDENEON_01205	547043.BIFPSEUDO_02349	1.9e-36	157.9	Bifidobacteriales													Bacteria	2DTWH@1,2GUGG@201174,33MZC@2,4D1FM@85004	NA|NA|NA		
DNDENEON_01206	547043.BIFPSEUDO_02348	0.0	2450.6	Bifidobacteriales	purL		6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKG6@201174,4CZ7C@85004,COG0046@1,COG0046@2,COG0047@1,COG0047@2	NA|NA|NA	F	CobB/CobQ-like glutamine amidotransferase domain
DNDENEON_01207	547043.BIFPSEUDO_02347	4.3e-138	497.3	Bifidobacteriales	purC	GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016874,GO:0016879,GO:0016881,GO:0044424,GO:0044444,GO:0044464	4.1.1.21,4.3.2.2,6.3.2.6	ko:K01587,ko:K01756,ko:K01923	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048,M00049	R01083,R04209,R04559,R04591	RC00064,RC00162,RC00379,RC00444,RC00445,RC00590	ko00000,ko00001,ko00002,ko01000			iAF1260.b2476,iB21_1397.B21_02330,iBWG_1329.BWG_2240,iE2348C_1286.E2348C_2713,iEC042_1314.EC042_2677,iEC55989_1330.EC55989_2759,iECABU_c1320.ECABU_c27880,iECBD_1354.ECBD_1213,iECB_1328.ECB_02368,iECDH10B_1368.ECDH10B_2642,iECDH1ME8569_1439.ECDH1ME8569_2402,iECDH1ME8569_1439.EcDH1_1193,iECD_1391.ECD_02368,iECED1_1282.ECED1_2911,iECH74115_1262.ECH74115_3698,iECIAI1_1343.ECIAI1_2527,iECNA114_1301.ECNA114_2561,iECO103_1326.ECO103_2988,iECO111_1330.ECO111_3199,iECO26_1355.ECO26_3522,iECOK1_1307.ECOK1_2784,iECP_1309.ECP_2490,iECS88_1305.ECS88_2658,iECSE_1348.ECSE_2760,iECSF_1327.ECSF_2329,iECSP_1301.ECSP_3415,iECUMN_1333.ECUMN_2789,iECW_1372.ECW_m2698,iECs_1301.ECs3338,iEKO11_1354.EKO11_1259,iETEC_1333.ETEC_2581,iEcDH1_1363.EcDH1_1193,iEcE24377_1341.EcE24377A_2757,iEcHS_1320.EcHS_A2607,iEcSMS35_1347.EcSMS35_2623,iEcolC_1368.EcolC_1200,iG2583_1286.G2583_2999,iJN746.PP_1240,iJO1366.b2476,iJR904.b2476,iLF82_1304.LF82_1775,iNRG857_1313.NRG857_12360,iSFV_1184.SFV_2521,iSF_1195.SF2519,iSFxv_1172.SFxv_2773,iS_1188.S2669,iSbBS512_1146.SbBS512_E2848,iUMNK88_1353.UMNK88_3071,iWFL_1372.ECW_m2698,iY75_1357.Y75_RS12925,iYL1228.KPN_02810,iZ_1308.Z3735	Bacteria	2GK3H@201174,4CZGQ@85004,COG0152@1,COG0152@2	NA|NA|NA	F	Belongs to the SAICAR synthetase family
DNDENEON_01208	547043.BIFPSEUDO_02346	1.3e-227	795.4	Bifidobacteriales	purT	GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008776,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016741,GO:0016742,GO:0016772,GO:0016774,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.2.2	ko:K08289	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	M00048	R04325,R04326	RC00026,RC00197,RC01128	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv0389,iSDY_1059.SDY_1135	Bacteria	2GMCS@201174,4CZXH@85004,COG0027@1,COG0027@2	NA|NA|NA	F	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
DNDENEON_01209	547043.BIFPSEUDO_02345	1.5e-225	788.5	Bifidobacteriales													Bacteria	2HEH6@201174,4CZSN@85004,COG0438@1,COG0438@2	NA|NA|NA	M	Glycosyl transferase 4-like domain
DNDENEON_01210	547043.BIFPSEUDO_02344	2.9e-198	697.6	Bifidobacteriales	ltaE		4.1.2.48	ko:K01620	ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230		R00751,R06171	RC00312,RC00372	ko00000,ko00001,ko01000				Bacteria	2GJ0V@201174,4CZ7G@85004,COG2008@1,COG2008@2	NA|NA|NA	E	Beta-eliminating lyase
DNDENEON_01212	547043.BIFPSEUDO_02342	8.1e-188	662.9	Bifidobacteriales	yocS			ko:K03453					ko00000	2.A.28			Bacteria	2GMAM@201174,4CZ1K@85004,COG0385@1,COG0385@2	NA|NA|NA	S	SBF-like CPA transporter family (DUF4137)
DNDENEON_01213	1437600.JDUI01000001_gene562	1.2e-61	242.3	Bifidobacteriales	rpsL	GO:0000372,GO:0000375,GO:0000376,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015935,GO:0016070,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0032991,GO:0033120,GO:0034336,GO:0034337,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904		ko:K02950	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IHUF@201174,4D0PK@85004,COG0048@1,COG0048@2	NA|NA|NA	J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DNDENEON_01214	1435051.BMOU_1979	3.3e-80	304.3	Bifidobacteriales	rpsG	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016020,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113		ko:K02992	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GMVW@201174,4CZQJ@85004,COG0049@1,COG0049@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
DNDENEON_01215	547043.BIFPSEUDO_02338	0.0	1370.9	Bifidobacteriales	fusA	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02355					ko00000,ko03012,ko03029				Bacteria	2GKB3@201174,4CYTB@85004,COG0480@1,COG0480@2	NA|NA|NA	J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DNDENEON_01216	547043.BIFPSEUDO_02336	9.5e-233	812.4	Bifidobacteriales	tuf	GO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0008150,GO:0009628,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0019899,GO:0030312,GO:0035375,GO:0036293,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070482,GO:0071944		ko:K02358					ko00000,ko03012,ko03029,ko04147				Bacteria	2GK4T@201174,4CYY7@85004,COG0050@1,COG0050@2	NA|NA|NA	J	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DNDENEON_01217	547043.BIFPSEUDO_02335	2e-103	381.7	Bifidobacteriales	efp	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576		ko:K02356					ko00000,ko03012				Bacteria	2GJMS@201174,4CYY6@85004,COG0231@1,COG0231@2	NA|NA|NA	J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DNDENEON_01218	547043.BIFPSEUDO_02334	1.8e-75	288.5	Bifidobacteriales	nusB	GO:0008150,GO:0040007		ko:K03625					ko00000,ko03009,ko03021				Bacteria	2IM3D@201174,4D0WG@85004,COG0781@1,COG0781@2	NA|NA|NA	K	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DNDENEON_01219	547043.BIFPSEUDO_02333	1.1e-239	835.5	Bifidobacteriales	carA	GO:0000050,GO:0003674,GO:0003824,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006520,GO:0006525,GO:0006526,GO:0006541,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019627,GO:0019637,GO:0019693,GO:0019752,GO:0019856,GO:0032991,GO:0034641,GO:0034654,GO:0040007,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046394,GO:0046483,GO:0055086,GO:0071704,GO:0071941,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494	6.3.5.5	ko:K01955,ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000			iAPECO1_1312.APECO1_1950,iNJ661.Rv1383,iUTI89_1310.UTI89_C0036,iYO844.BSU15510,ic_1306.c0040	Bacteria	2GKFA@201174,4CYQ1@85004,COG0505@1,COG0505@2	NA|NA|NA	F	Belongs to the CarA family
DNDENEON_01220	547043.BIFPSEUDO_02332	0.0	2221.8	Bifidobacteriales	carB	GO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006220,GO:0006221,GO:0006520,GO:0006525,GO:0006526,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019627,GO:0019637,GO:0019693,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494	6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000			iAF1260.b0033,iBWG_1329.BWG_0031,iECDH10B_1368.ECDH10B_0034,iECDH1ME8569_1439.ECDH1ME8569_0031,iECUMN_1333.ECUMN_0034,iEcDH1_1363.EcDH1_3566,iJN746.PP_4723,iJO1366.b0033,iJR904.b0033,iPC815.YPO0482,iY75_1357.Y75_RS00170,iYL1228.KPN_00041	Bacteria	2GK5N@201174,4CZJ4@85004,COG0458@1,COG0458@2	NA|NA|NA	EF	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
DNDENEON_01221	547043.BIFPSEUDO_02331	3.7e-171	607.4	Bifidobacteriales	pyrF	GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.4.2.10,4.1.1.23	ko:K01591,ko:K13421	ko00240,ko00983,ko01100,map00240,map00983,map01100	M00051	R00965,R01870,R08231	RC00063,RC00409,RC00611	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS17585	Bacteria	2GKWK@201174,4D2UX@85004,COG0284@1,COG0284@2	NA|NA|NA	F	Essential for recycling GMP and indirectly, cGMP
DNDENEON_01222	547043.BIFPSEUDO_02330	1.2e-106	392.5	Bifidobacteriales	gmk	GO:0003674,GO:0003824,GO:0004385,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657	2.7.4.8,4.1.1.23	ko:K00942,ko:K01591	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00050,M00051	R00332,R00965,R02090	RC00002,RC00409	ko00000,ko00001,ko00002,ko01000			iAPECO1_1312.APECO1_2813,iIT341.HP0321,iPC815.YPO0040,iSBO_1134.SBO_3729,iSFV_1184.SFV_3881,iSFxv_1172.SFxv_4016,iUTI89_1310.UTI89_C4193	Bacteria	2I2FT@201174,4CYUT@85004,COG0194@1,COG0194@2	NA|NA|NA	F	Essential for recycling GMP and indirectly, cGMP
DNDENEON_01224	547043.BIFPSEUDO_02327	0.0	1243.4	Bifidobacteriales	ilvD	GO:0003674,GO:0003824,GO:0004160,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1259,iECIAI39_1322.ECIAI39_3015	Bacteria	2GJIJ@201174,4CZ1T@85004,COG0129@1,COG0129@2	NA|NA|NA	H	Belongs to the IlvD Edd family
DNDENEON_01225	547043.BIFPSEUDO_02326	1.4e-46	191.8	Bifidobacteriales	rpoZ	GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234	2.7.7.6	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400				Bacteria	2IQHU@201174,4D12C@85004,COG1758@1,COG1758@2	NA|NA|NA	K	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
DNDENEON_01226	547043.BIFPSEUDO_02325	4.2e-228	797.0	Bifidobacteriales	metK	GO:0000096,GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006556,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009069,GO:0009108,GO:0009116,GO:0009119,GO:0009987,GO:0016020,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0019752,GO:0019899,GO:0030312,GO:0030554,GO:0030955,GO:0031420,GO:0032553,GO:0032555,GO:0032559,GO:0033353,GO:0034641,GO:0035375,GO:0035639,GO:0036094,GO:0040007,GO:0042278,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046872,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901605,GO:1901657	2.5.1.6	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	M00034,M00035,M00368,M00609	R00177,R04771	RC00021,RC01211	ko00000,ko00001,ko00002,ko01000			iJN678.metX,iJN746.PP_4967,iYL1228.KPN_03375	Bacteria	2GJ4U@201174,4CZ5D@85004,COG0192@1,COG0192@2	NA|NA|NA	H	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DNDENEON_01227	547043.BIFPSEUDO_02324	0.0	1471.4	Bifidobacteriales	priA	GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576		ko:K04066	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	2GKES@201174,4D04J@85004,COG1198@1,COG1198@2	NA|NA|NA	L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DNDENEON_01228	547043.BIFPSEUDO_02323	7.8e-134	483.0	Bifidobacteriales			3.8.1.2	ko:K01560,ko:K07025	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120		R05287	RC00697	ko00000,ko00001,ko01000				Bacteria	2I8XE@201174,4CZGV@85004,COG1011@1,COG1011@2	NA|NA|NA	S	Haloacid dehalogenase-like hydrolase
DNDENEON_01229	547043.BIFPSEUDO_02322	5.4e-178	630.2	Bifidobacteriales	fmt	GO:0003674,GO:0003824,GO:0004479,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006418,GO:0006431,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019752,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.1.1.176,2.1.2.9	ko:K00604,ko:K03500	ko00670,ko00970,map00670,map00970		R03940	RC00026,RC00165	ko00000,ko00001,ko01000,ko03009			iECABU_c1320.ECABU_c37050,iECUMN_1333.ECUMN_3761,ic_1306.c4048	Bacteria	2GKH5@201174,4CZ8C@85004,COG0223@1,COG0223@2	NA|NA|NA	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DNDENEON_01230	547043.BIFPSEUDO_02321	3.5e-123	447.6	Bifidobacteriales	serB		3.1.3.3	ko:K01079	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R00582	RC00017	ko00000,ko00001,ko00002,ko01000,ko01009				Bacteria	2GJDH@201174,4CYWC@85004,COG0560@1,COG0560@2	NA|NA|NA	E	haloacid dehalogenase-like hydrolase
DNDENEON_01231	547043.BIFPSEUDO_02320	9.9e-283	978.8	Bifidobacteriales	arc	GO:0000302,GO:0000502,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010035,GO:0010498,GO:0010499,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019941,GO:0022623,GO:0022624,GO:0030163,GO:0030312,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042802,GO:0043170,GO:0043335,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044424,GO:0044464,GO:0044877,GO:0050896,GO:0051409,GO:0051603,GO:0051704,GO:0051716,GO:0070628,GO:0070887,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071944,GO:0097366,GO:0140030,GO:0140035,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1902494,GO:1905368,GO:1905369		ko:K13527	ko03050,map03050	M00342			ko00000,ko00001,ko00002,ko03051				Bacteria	2GMR1@201174,4CZ86@85004,COG1222@1,COG1222@2	NA|NA|NA	O	AAA ATPase forming ring-shaped complexes
DNDENEON_01232	547043.BIFPSEUDO_02319	1.6e-302	1044.6	Bifidobacteriales	dop	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006464,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0016810,GO:0016811,GO:0017076,GO:0018193,GO:0018205,GO:0019538,GO:0019941,GO:0030163,GO:0030554,GO:0032446,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0070490,GO:0070647,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575	3.5.1.119,6.3.1.19	ko:K13571,ko:K20814		M00342	R11207	RC00090,RC00096	ko00000,ko00002,ko01000,ko03051				Bacteria	2GJGI@201174,4CZAN@85004,COG4122@1,COG4122@2	NA|NA|NA	S	Pup-ligase protein
DNDENEON_01233	547043.BIFPSEUDO_02318	3.3e-160	570.9	Bifidobacteriales	hisN		3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000				Bacteria	2HGP2@201174,4CYWZ@85004,COG0483@1,COG0483@2	NA|NA|NA	G	Inositol monophosphatase family
DNDENEON_01234	547043.BIFPSEUDO_02317	1.4e-24	118.2	Bifidobacteriales	pup			ko:K13570					ko00000,ko04121				Bacteria	2B5FT@1,2GV5R@201174,31YAF@2,4D1NH@85004	NA|NA|NA	S	Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation
DNDENEON_01235	547043.BIFPSEUDO_02316	2.6e-280	970.7	Bifidobacteriales	pafA	GO:0000166,GO:0000302,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010035,GO:0010498,GO:0016020,GO:0016740,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0018193,GO:0018205,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030312,GO:0030554,GO:0032446,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034614,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044464,GO:0050896,GO:0051409,GO:0051603,GO:0051704,GO:0051716,GO:0070490,GO:0070647,GO:0070887,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071944,GO:0097159,GO:0097366,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170	6.3.1.19	ko:K13571		M00342	R11207	RC00090,RC00096	ko00000,ko00002,ko01000,ko03051				Bacteria	2GMC6@201174,4CZ12@85004,COG0638@1,COG0638@2	NA|NA|NA	O	Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
DNDENEON_01236	547043.BIFPSEUDO_02315	9.7e-141	506.1	Bifidobacteriales													Bacteria	2HHRH@201174,4CZI2@85004,COG1304@1,COG1304@2	NA|NA|NA	C	FMN binding
DNDENEON_01237	547043.BIFPSEUDO_02314	1.8e-57	228.4	Bifidobacteriales													Bacteria	2AUT3@1,2IKR4@201174,31KG5@2,4D141@85004	NA|NA|NA		
DNDENEON_01238	1435051.BMOU_2003	1.4e-41	175.3	Bifidobacteriales	hup	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141		ko:K03530					ko00000,ko03032,ko03036,ko03400				Bacteria	2IKQR@201174,4D11V@85004,COG0776@1,COG0776@2	NA|NA|NA	L	Belongs to the bacterial histone-like protein family
DNDENEON_01239	547043.BIFPSEUDO_02312	0.0	1525.8	Bifidobacteriales													Bacteria	2GMAV@201174,4CYRT@85004,COG0392@1,COG0392@2	NA|NA|NA	S	Lysylphosphatidylglycerol synthase TM region
DNDENEON_01240	547043.BIFPSEUDO_02311	1.6e-279	968.0	Bifidobacteriales	purB	GO:0003674,GO:0003824,GO:0004018,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716	4.3.2.2	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048,M00049	R01083,R04559	RC00379,RC00444,RC00445	ko00000,ko00001,ko00002,ko01000			iAF1260.b1131,iBWG_1329.BWG_0979,iE2348C_1286.E2348C_1272,iEC042_1314.EC042_1202,iECABU_c1320.ECABU_c13450,iECDH10B_1368.ECDH10B_1203,iECP_1309.ECP_1126,iECUMN_1333.ECUMN_1375,iETEC_1333.ETEC_1255,iEcHS_1320.EcHS_A1251,iEcolC_1368.EcolC_2472,iJO1366.b1131,iJR904.b1131,iLF82_1304.LF82_1774,iNRG857_1313.NRG857_05460,iY75_1357.Y75_RS05905,ic_1306.c1510	Bacteria	2GM71@201174,4CYV6@85004,COG0015@1,COG0015@2	NA|NA|NA	F	Adenylosuccinate lyase C-terminal
DNDENEON_01241	547043.BIFPSEUDO_02310	1.6e-277	961.4	Bifidobacteriales													Bacteria	2IHFB@201174,4CZ17@85004,COG1075@1,COG1075@2	NA|NA|NA	S	PGAP1-like protein
DNDENEON_01242	547043.BIFPSEUDO_02308	5.6e-53	213.4	Bifidobacteriales													Bacteria	2B4H0@1,2GYM6@201174,31X8Q@2,4D1TX@85004	NA|NA|NA		
DNDENEON_01243	547043.BIFPSEUDO_02307	1.1e-61	243.0	Bifidobacteriales													Bacteria	2BG6D@1,2IR67@201174,32A37@2,4D18W@85004	NA|NA|NA		
DNDENEON_01244	547043.BIFPSEUDO_02306	1.9e-181	641.7	Bifidobacteriales				ko:K07114					ko00000,ko02000	1.A.13.2.2,1.A.13.2.3			Bacteria	2GJMP@201174,4CZ8P@85004,COG2304@1,COG2304@2	NA|NA|NA	S	von Willebrand factor (vWF) type A domain
DNDENEON_01245	547043.BIFPSEUDO_02305	4.7e-191	673.7	Bifidobacteriales				ko:K07114					ko00000,ko02000	1.A.13.2.2,1.A.13.2.3			Bacteria	2I9VM@201174,4CZ00@85004,COG2304@1,COG2304@2	NA|NA|NA	S	von Willebrand factor (vWF) type A domain
DNDENEON_01246	547043.BIFPSEUDO_02304	5.2e-90	337.0	Bifidobacteriales													Bacteria	2AUTC@1,2IKRN@201174,31KGE@2,4D134@85004	NA|NA|NA		
DNDENEON_01247	547043.BIFPSEUDO_02303	4.2e-175	620.5	Bifidobacteriales													Bacteria	2GKSJ@201174,4CYYD@85004,COG1721@1,COG1721@2	NA|NA|NA	S	Protein of unknown function DUF58
DNDENEON_01248	547043.BIFPSEUDO_02302	4e-182	644.0	Bifidobacteriales	moxR			ko:K03924					ko00000,ko01000				Bacteria	2GK07@201174,4CZ2I@85004,COG0714@1,COG0714@2	NA|NA|NA	S	ATPase family associated with various cellular activities (AAA)
DNDENEON_01249	547043.BIFPSEUDO_02301	4.4e-137	493.8	Bifidobacteriales	ung	GO:0003674,GO:0003824,GO:0004844,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360	3.2.2.27	ko:K03648	ko03410,ko05340,map03410,map05340				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJ9Z@201174,4CZ3Y@85004,COG0692@1,COG0692@2	NA|NA|NA	L	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DNDENEON_01250	547043.BIFPSEUDO_02300	8.5e-77	293.5	Bifidobacteriales													Bacteria	2DP6P@1,2GQYA@201174,330SA@2,4CZYT@85004	NA|NA|NA	S	LytR cell envelope-related transcriptional attenuator
DNDENEON_01251	702459.BBPR_0057	7.2e-96	356.7	Bifidobacteriales													Bacteria	2IBDV@201174,4D0D7@85004,COG4584@1,COG4584@2	NA|NA|NA	L	PFAM Integrase catalytic
DNDENEON_01253	566552.BIFCAT_00582	3.2e-127	461.1	Bifidobacteriales													Bacteria	2I61X@201174,4D2U1@85004,COG1246@1,COG1246@2	NA|NA|NA	E	Psort location Cytoplasmic, score 8.87
DNDENEON_01254	566552.BIFCAT_00581	2.2e-134	485.0	Bifidobacteriales	yebE												Bacteria	2GMGZ@201174,4D0BS@85004,COG1434@1,COG1434@2	NA|NA|NA	S	DUF218 domain
DNDENEON_01255	547043.BIFPSEUDO_03900	1.2e-231	808.9	Bifidobacteriales	tig	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071944		ko:K03545					ko00000				Bacteria	2GJIG@201174,4CZ6P@85004,COG0544@1,COG0544@2	NA|NA|NA	D	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
DNDENEON_01256	566552.BIFCAT_00579	2e-236	824.7	Bifidobacteriales	rnd		3.1.13.5	ko:K03684					ko00000,ko01000,ko03016				Bacteria	2GKNM@201174,4CYUV@85004,COG0349@1,COG0349@2	NA|NA|NA	J	3'-5' exonuclease
DNDENEON_01257	547043.BIFPSEUDO_03903	2.2e-79	302.0	Bifidobacteriales													Bacteria	2B58P@1,2HZMM@201174,31Y2Q@2,4D0Y9@85004	NA|NA|NA	S	Protein of unknown function (DUF3000)
DNDENEON_01258	547043.BIFPSEUDO_03905	7.4e-166	589.7	Bifidobacteriales	pflA	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0018307,GO:0019538,GO:0033554,GO:0036211,GO:0043170,GO:0043364,GO:0043365,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0055114,GO:0070283,GO:0071704,GO:1901564	1.97.1.4	ko:K04069			R04710		ko00000,ko01000			iECOK1_1307.ECOK1_0925,iEcE24377_1341.EcE24377A_0980,iEcSMS35_1347.EcSMS35_2219,iYL1228.KPN_00930	Bacteria	2GN2B@201174,4CZ5Y@85004,COG1180@1,COG1180@2	NA|NA|NA	C	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DNDENEON_01259	547043.BIFPSEUDO_03906	0.0	1623.6	Bifidobacteriales	pflB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006566,GO:0006567,GO:0006629,GO:0006631,GO:0006807,GO:0008150,GO:0008152,GO:0008861,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009987,GO:0016020,GO:0016054,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0016999,GO:0017144,GO:0019541,GO:0019752,GO:0032787,GO:0042737,GO:0043436,GO:0043875,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046459,GO:0070689,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	2.3.1.54	ko:K00656	ko00620,ko00640,ko00650,ko01100,ko01120,map00620,map00640,map00650,map01100,map01120		R00212,R06987	RC00004,RC01181,RC02742,RC02833	ko00000,ko00001,ko01000			iECH74115_1262.ECH74115_1064,iECIAI39_1322.ECIAI39_2245,iECSP_1301.ECSP_1007,iECs_1301.ECs0986,iEcSMS35_1347.EcSMS35_2218,iEcSMS35_1347.EcSMS35_3410,iG2583_1286.G2583_1138,iSDY_1059.SDY_2358,iZ_1308.Z1248	Bacteria	2GTTT@201174,4CZ59@85004,COG1882@1,COG1882@2	NA|NA|NA	C	Pyruvate formate lyase-like
DNDENEON_01260	547043.BIFPSEUDO_03907	4.5e-31	139.8	Bifidobacteriales													Bacteria	2EHMB@1,2HZRX@201174,33BD3@2,4D1G1@85004	NA|NA|NA		
DNDENEON_01261	566552.BIFCAT_00573	0.0	1108.2	Bifidobacteriales	nadE	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.1.5,6.3.5.1	ko:K01916,ko:K01950	ko00760,ko01100,map00760,map01100	M00115	R00189,R00257	RC00010,RC00100	ko00000,ko00001,ko00002,ko01000				Bacteria	2GK2C@201174,4CZ14@85004,COG0171@1,COG0171@2,COG0388@1,COG0388@2	NA|NA|NA	H	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DNDENEON_01262	401473.BDP_1382	1.2e-211	742.3	Bifidobacteriales				ko:K01436					ko00000,ko01000,ko01002				Bacteria	2GK05@201174,4CZC6@85004,COG1473@1,COG1473@2	NA|NA|NA	S	Peptidase dimerisation domain
DNDENEON_01263	326426.Bbr_0783	1.3e-93	349.4	Bifidobacteriales	metI			ko:K02072	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	2GY65@201174,4CZWG@85004,COG2011@1,COG2011@2	NA|NA|NA	P	Binding-protein-dependent transport system inner membrane component
DNDENEON_01264	401473.BDP_1384	2.5e-174	618.2	Bifidobacteriales	metN			ko:K02071	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	2GJ9P@201174,4CZYI@85004,COG1135@1,COG1135@2	NA|NA|NA	P	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DNDENEON_01265	78345.BMERY_0206	1.3e-150	539.3	Bifidobacteriales	metQ			ko:K02073	ko02010,map02010	M00238			ko00000,ko00001,ko00002,ko02000	3.A.1.24			Bacteria	2GMNI@201174,4CZNB@85004,COG1464@1,COG1464@2	NA|NA|NA	P	NLPA lipoprotein
DNDENEON_01267	518635.BIFANG_02739	1.4e-110	406.0	Bifidobacteriales													Bacteria	2HZBH@201174,4CZIQ@85004,COG0561@1,COG0561@2	NA|NA|NA	S	Sucrose-6F-phosphate phosphohydrolase
DNDENEON_01268	547043.BIFPSEUDO_03921	0.0	1606.3	Bifidobacteriales													Bacteria	28KWM@1,2I981@201174,2ZACS@2,4D04V@85004	NA|NA|NA	S	LPXTG-motif cell wall anchor domain protein
DNDENEON_01269	411483.FAEPRAA2165_02967	5.5e-127	460.3	Ruminococcaceae													Bacteria	1V6N4@1239,24K1H@186801,2B9ZZ@1,323DM@2,3WJW5@541000	NA|NA|NA	S	non supervised orthologous group
DNDENEON_01273	547043.BIFPSEUDO_04216	5e-273	946.4	Bifidobacteriales	frc	GO:0003674,GO:0003824,GO:0008150,GO:0008410,GO:0009268,GO:0009628,GO:0009987,GO:0010447,GO:0016740,GO:0016782,GO:0033608,GO:0050896,GO:0051716,GO:0071214,GO:0071467,GO:0071468,GO:0104004	2.8.3.16	ko:K07749					ko00000,ko01000			iUMNK88_1353.UMNK88_2972	Bacteria	2GIU7@201174,4D07S@85004,COG1804@1,COG1804@2	NA|NA|NA	C	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
DNDENEON_01274	547043.BIFPSEUDO_04215	5.7e-192	676.8	Bifidobacteriales	yfdV	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K07088					ko00000			iECW_1372.ECW_m2605,iWFL_1372.ECW_m2605	Bacteria	2GUU2@201174,4CYYA@85004,COG0679@1,COG0679@2	NA|NA|NA	S	Membrane transport protein
DNDENEON_01275	547043.BIFPSEUDO_04213	0.0	1200.3	Bifidobacteriales	oxc	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0008150,GO:0008152,GO:0008949,GO:0009056,GO:0009268,GO:0009628,GO:0009987,GO:0010447,GO:0016054,GO:0016829,GO:0016830,GO:0016831,GO:0017076,GO:0019752,GO:0019842,GO:0030554,GO:0030976,GO:0032553,GO:0032555,GO:0032559,GO:0033609,GO:0033611,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043531,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0046872,GO:0048037,GO:0050662,GO:0050896,GO:0051716,GO:0071214,GO:0071467,GO:0071468,GO:0071704,GO:0097159,GO:0097367,GO:0104004,GO:1901265,GO:1901363,GO:1901575,GO:1901681	4.1.1.8	ko:K01577	ko00630,ko01100,map00630,map01100		R01908	RC00620	ko00000,ko00001,ko01000			iEcSMS35_1347.EcSMS35_2523,iNJ661.Rv0118c	Bacteria	2GM6Y@201174,4CZWD@85004,COG0028@1,COG0028@2	NA|NA|NA	EH	Thiamine pyrophosphate enzyme, central domain
DNDENEON_01276	547043.BIFPSEUDO_04211	7.1e-175	619.8	Bifidobacteriales													Bacteria	2IK2B@201174,4D2XD@85004,COG4932@1,COG4932@2	NA|NA|NA	M	LPXTG-motif cell wall anchor domain protein
DNDENEON_01277	547043.BIFPSEUDO_04210	0.0	1442.2	Bifidobacteriales	glgE		2.4.99.16	ko:K16147	ko00500,ko01100,map00500,map01100		R09994		ko00000,ko00001,ko01000		GH13		Bacteria	2GJKR@201174,4CZSK@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB
DNDENEON_01278	547043.BIFPSEUDO_04209	9.7e-91	339.3	Bifidobacteriales	ppa	GO:0000287,GO:0003674,GO:0003824,GO:0004427,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0043167,GO:0043169,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0071944	3.6.1.1	ko:K01507	ko00190,map00190				ko00000,ko00001,ko01000			iNJ661.Rv3628	Bacteria	2GM7F@201174,4CYWS@85004,COG0221@1,COG0221@2	NA|NA|NA	C	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DNDENEON_01279	547043.BIFPSEUDO_04208	9.4e-98	362.8	Bifidobacteriales	mntP												Bacteria	2GNBU@201174,4D01X@85004,COG1971@1,COG1971@2	NA|NA|NA	P	Probably functions as a manganese efflux pump
DNDENEON_01280	547043.BIFPSEUDO_04207	4.9e-134	483.8	Bifidobacteriales													Bacteria	2A0I6@1,2GJ8M@201174,30NNB@2,4D0ZN@85004	NA|NA|NA		
DNDENEON_01281	547043.BIFPSEUDO_04206	4.9e-134	483.8	Bifidobacteriales													Bacteria	2GJGU@201174,4CZB9@85004,COG0745@1,COG0745@2	NA|NA|NA	KT	Transcriptional regulatory protein, C terminal
DNDENEON_01282	547043.BIFPSEUDO_04205	9.4e-123	446.0	Bifidobacteriales	nth	GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0030312,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363	4.2.99.18	ko:K10773	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJ01@201174,4CZ31@85004,COG0177@1,COG0177@2	NA|NA|NA	L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DNDENEON_01283	547043.BIFPSEUDO_04204	3.5e-288	996.9	Bifidobacteriales				ko:K02035	ko02024,map02024	M00239			ko00000,ko00001,ko00002,ko02000	3.A.1.5			Bacteria	2GM5G@201174,4CYUZ@85004,COG0747@1,COG0747@2	NA|NA|NA	E	Bacterial extracellular solute-binding proteins, family 5 Middle
DNDENEON_01284	547043.BIFPSEUDO_04203	0.0	1860.9	Bifidobacteriales	valS		6.1.1.9	ko:K01873	ko00970,map00970	M00359,M00360	R03665	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GK8H@201174,4CYVG@85004,COG0525@1,COG0525@2	NA|NA|NA	J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
DNDENEON_01285	547043.BIFPSEUDO_04201	0.0	1141.7	Bifidobacteriales				ko:K01421,ko:K21449					ko00000,ko02000	1.B.40.2			Bacteria	2I9PN@201174,4CZC2@85004,COG1511@1,COG1511@2	NA|NA|NA	S	domain protein
DNDENEON_01286	547043.BIFPSEUDO_04200	1e-69	269.2	Bifidobacteriales	tyrA		5.4.99.5	ko:K04092	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024,M00025	R01715	RC03116	ko00000,ko00001,ko00002,ko01000				Bacteria	2IQ46@201174,4D12A@85004,COG1605@1,COG1605@2	NA|NA|NA	E	Chorismate mutase type II
DNDENEON_01287	547043.BIFPSEUDO_04199	1.3e-79	302.4	Bifidobacteriales				ko:K03719					ko00000,ko03000,ko03036				Bacteria	2GK3G@201174,4D0XT@85004,COG1522@1,COG1522@2	NA|NA|NA	K	helix_turn_helix ASNC type
DNDENEON_01288	547043.BIFPSEUDO_04198	1.9e-247	862.1	Bifidobacteriales	rho	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006360,GO:0006363,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0018130,GO:0019438,GO:0030312,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576		ko:K03628	ko03018,map03018				ko00000,ko00001,ko03019,ko03021				Bacteria	2GIWY@201174,4CZ2Z@85004,COG1158@1,COG1158@2	NA|NA|NA	K	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DNDENEON_01289	547043.BIFPSEUDO_04196	0.0	1099.7	Bifidobacteriales			5.4.99.9	ko:K01854	ko00052,ko00520,map00052,map00520		R00505,R09009	RC00317,RC02396	ko00000,ko00001,ko01000				Bacteria	2HZ9K@201174,4CZ3Z@85004,COG1232@1,COG1232@2	NA|NA|NA	H	Flavin containing amine oxidoreductase
DNDENEON_01290	547043.BIFPSEUDO_04195	2.1e-51	208.0	Bifidobacteriales		GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944											Bacteria	2AFXT@1,2IKPZ@201174,3161G@2,4D0UV@85004	NA|NA|NA	S	Protein of unknown function (DUF2469)
DNDENEON_01291	547043.BIFPSEUDO_04193	2.7e-205	721.1	Bifidobacteriales			2.3.1.57	ko:K00657	ko00330,ko01100,ko04216,map00330,map01100,map04216	M00135	R01154	RC00004,RC00096	ko00000,ko00001,ko00002,ko01000				Bacteria	2I2GV@201174,4CYPW@85004,COG1670@1,COG1670@2	NA|NA|NA	J	Acetyltransferase (GNAT) domain
DNDENEON_01292	547043.BIFPSEUDO_04192	8.7e-284	982.2	Bifidobacteriales	gatB	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.3.5.6,6.3.5.7	ko:K02434	ko00970,ko01100,map00970,map01100		R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029				Bacteria	2GJJH@201174,4CYUY@85004,COG0064@1,COG0064@2	NA|NA|NA	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DNDENEON_01293	547043.BIFPSEUDO_04191	8.6e-287	992.3	Bifidobacteriales	gatA	GO:0008150,GO:0040007	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100		R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029				Bacteria	2GJK5@201174,4CZ1X@85004,COG0154@1,COG0154@2	NA|NA|NA	F	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
DNDENEON_01294	547043.BIFPSEUDO_04190	1.3e-46	192.2	Bifidobacteriales	gatC	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	6.3.5.6,6.3.5.7	ko:K02435	ko00970,ko01100,map00970,map01100		R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029				Bacteria	2IQJN@201174,4D10U@85004,COG0721@1,COG0721@2	NA|NA|NA	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DNDENEON_01295	401473.BDP_1991	6.2e-134	483.8	Bifidobacteriales													Bacteria	2ICPH@201174,4CZJ7@85004,COG5340@1,COG5340@2	NA|NA|NA	K	Psort location Cytoplasmic, score
DNDENEON_01296	547043.BIFPSEUDO_04189	3.8e-144	517.7	Bifidobacteriales	spoU		2.1.1.185	ko:K03218,ko:K03437					ko00000,ko01000,ko03009,ko03016				Bacteria	2GM1A@201174,4CZE8@85004,COG0566@1,COG0566@2	NA|NA|NA	J	RNA methyltransferase TrmH family
DNDENEON_01297	547043.BIFPSEUDO_04187	8.4e-114	416.4	Bifidobacteriales	pyrE		2.4.2.10	ko:K00762	ko00240,ko01100,map00240,map01100	M00051	R01870	RC00611	ko00000,ko00001,ko00002,ko01000			iJN678.umpS	Bacteria	2HZDS@201174,4CZZ6@85004,COG0461@1,COG0461@2	NA|NA|NA	F	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DNDENEON_01298	547043.BIFPSEUDO_04186	0.0	3887.4	Bifidobacteriales	scrB		3.2.1.26,3.2.1.97	ko:K01193,ko:K17624	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00801,R00802,R02410,R03635,R03921,R06088	RC00028,RC00077	ko00000,ko00001,ko01000		GH101,GH32		Bacteria	2GK37@201174,4D2Y1@85004,COG1621@1,COG1621@2,COG3507@1,COG3507@2,COG3940@1,COG3940@2,COG5492@1,COG5492@2	NA|NA|NA	N	Glycosyl hydrolases family 43
DNDENEON_01299	547043.BIFPSEUDO_04184	0.0	1721.4	Bifidobacteriales													Bacteria	2GK37@201174,4D2S5@85004,COG5492@1,COG5492@2	NA|NA|NA	N	Bacterial Ig-like domain 2
DNDENEON_01300	547043.BIFPSEUDO_04183	4.4e-170	604.4	Bifidobacteriales	rmuC			ko:K09760					ko00000				Bacteria	2GP4U@201174,4CZA5@85004,COG1322@1,COG1322@2	NA|NA|NA	S	RmuC family
DNDENEON_01301	547043.BIFPSEUDO_04181	1.4e-132	479.2	Bifidobacteriales			3.6.3.3,3.6.3.5,3.6.3.54	ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016		R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5,3.A.3.6			Bacteria	2GM0U@201174,4CZ7S@85004,COG2217@1,COG2217@2	NA|NA|NA	P	Heavy metal translocating P-type atpase
DNDENEON_01302	547043.BIFPSEUDO_04180	0.0	1712.6	Bifidobacteriales	clpB	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944		ko:K03694,ko:K03695	ko04213,map04213				ko00000,ko00001,ko03110				Bacteria	2GJ73@201174,4CZDY@85004,COG0542@1,COG0542@2	NA|NA|NA	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
DNDENEON_01303	547043.BIFPSEUDO_04179	1.4e-164	585.5	Bifidobacteriales	fahA												Bacteria	2GN2G@201174,4CZH5@85004,COG0179@1,COG0179@2	NA|NA|NA	Q	Fumarylacetoacetate (FAA) hydrolase family
DNDENEON_01304	547043.BIFPSEUDO_04178	1.4e-147	528.9	Bifidobacteriales	yggS			ko:K06997					ko00000				Bacteria	2GMRJ@201174,4CZUY@85004,COG0325@1,COG0325@2	NA|NA|NA	S	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DNDENEON_01305	547043.BIFPSEUDO_04177	1.2e-79	302.4	Bifidobacteriales													Bacteria	2AWBM@1,2IP6P@201174,31N7D@2,4D14B@85004	NA|NA|NA		
DNDENEON_01306	547043.BIFPSEUDO_04176	2.4e-209	734.6	Bifidobacteriales	gluQ		6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016				Bacteria	2GKMT@201174,4CYRY@85004,COG0008@1,COG0008@2	NA|NA|NA	J	Belongs to the class-I aminoacyl-tRNA synthetase family
DNDENEON_01307	78346.BRUM_1471	3.2e-70	271.2	Bifidobacteriales													Bacteria	2GMJR@201174,4D0RU@85004,COG5479@1,COG5479@2	NA|NA|NA	M	Protein of unknown function (DUF3152)
DNDENEON_01308	1680.BADO_1541	4.2e-09	67.4	Bifidobacteriales													Bacteria	2GMJR@201174,4D0RU@85004,COG5479@1,COG5479@2	NA|NA|NA	M	Protein of unknown function (DUF3152)
DNDENEON_01309	566552.BIFCAT_00264	1.4e-125	455.7	Bifidobacteriales	gla			ko:K02440					ko00000,ko02000	1.A.8.1,1.A.8.2		iHN637.CLJU_RS07630	Bacteria	2GKK3@201174,4CZ7F@85004,COG0580@1,COG0580@2	NA|NA|NA	U	Belongs to the MIP aquaporin (TC 1.A.8) family
DNDENEON_01311	547043.BIFPSEUDO_04166	1.7e-70	271.9	Bifidobacteriales	rplI	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02939	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2IKX7@201174,4D0P9@85004,COG0359@1,COG0359@2	NA|NA|NA	J	Binds to the 23S rRNA
DNDENEON_01312	547043.BIFPSEUDO_04165	3.5e-36	157.1	Bifidobacteriales	rpsR	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02963,ko:K03111,ko:K15125	ko03010,ko03030,ko03430,ko03440,ko05133,map03010,map03030,map03430,map03440,map05133	M00178			br01610,ko00000,ko00001,ko00002,ko00536,ko03011,ko03029,ko03032,ko03400				Bacteria	2IQ92@201174,4D103@85004,COG0238@1,COG0238@2	NA|NA|NA	J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DNDENEON_01313	547043.BIFPSEUDO_04164	2.8e-69	268.5	Bifidobacteriales	ssb1			ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440				ko00000,ko00001,ko03029,ko03032,ko03400				Bacteria	2GMM3@201174,4CZ5V@85004,COG0629@1,COG0629@2	NA|NA|NA	L	Single-stranded DNA-binding protein
DNDENEON_01314	566552.BIFCAT_00257	1.6e-185	655.2	Bifidobacteriales	prs	GO:0000287,GO:0003674,GO:0003824,GO:0004749,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006015,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0019637,GO:0019693,GO:0030145,GO:0030312,GO:0040007,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0046390,GO:0046391,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901576	2.7.6.1	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	M00005	R01049	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ9S@201174,4CZPM@85004,COG0462@1,COG0462@2	NA|NA|NA	F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DNDENEON_01315	547043.BIFPSEUDO_04161	2.8e-174	617.8	Bifidobacteriales	rbsK		2.7.1.15	ko:K00852	ko00030,map00030		R01051,R02750	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	2I04R@201174,4CZIB@85004,COG0524@1,COG0524@2	NA|NA|NA	H	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DNDENEON_01316	547043.BIFPSEUDO_04160	1.1e-259	902.1	Bifidobacteriales				ko:K08168		M00704			ko00000,ko00002,ko01504,ko02000	2.A.1.3.16,2.A.1.3.22,2.A.1.3.6			Bacteria	2GJV6@201174,4CZH3@85004,COG0477@1,COG0477@2	NA|NA|NA	EGP	Major Facilitator Superfamily
DNDENEON_01317	547043.BIFPSEUDO_04159	3.3e-167	594.3	Bifidobacteriales	iunH2		3.2.2.1	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100		R01245,R01273,R01677,R01770,R02143	RC00033,RC00063,RC00122,RC00318,RC00485	ko00000,ko00001,ko01000				Bacteria	2GP6N@201174,4CZ0Y@85004,COG1957@1,COG1957@2	NA|NA|NA	F	Inosine-uridine preferring nucleoside hydrolase
DNDENEON_01318	547043.BIFPSEUDO_04158	1.1e-197	695.7	Bifidobacteriales				ko:K02529,ko:K05499					ko00000,ko03000				Bacteria	2GNVD@201174,4D05Q@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_01319	547043.BIFPSEUDO_04157	4.5e-61	240.7	Bifidobacteriales													Bacteria	2BH71@1,2IIPG@201174,32B89@2,4D0XE@85004	NA|NA|NA		
DNDENEON_01320	566552.BIFCAT_00308	4.8e-204	716.8	Bifidobacteriales	rfbB	GO:0000166,GO:0000271,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005975,GO:0005976,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008460,GO:0009058,GO:0009059,GO:0009225,GO:0009226,GO:0009987,GO:0016051,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019305,GO:0019438,GO:0030312,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044464,GO:0045226,GO:0046379,GO:0046383,GO:0046483,GO:0048037,GO:0050662,GO:0051287,GO:0055086,GO:0070404,GO:0071704,GO:0071944,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576	4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv3464	Bacteria	2GNDU@201174,4CZZY@85004,COG1088@1,COG1088@2	NA|NA|NA	M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
DNDENEON_01321	566552.BIFCAT_00307	1.6e-255	888.3	Bifidobacteriales				ko:K07133					ko00000				Bacteria	2HJ52@201174,4D2TQ@85004,COG1373@1,COG1373@2	NA|NA|NA	S	Domain of unknown function (DUF4143)
DNDENEON_01322	1680.BADO_1525	2.7e-309	1067.8	Bifidobacteriales	XK27_08315												Bacteria	2HVID@201174,4CZ6J@85004,COG1368@1,COG1368@2	NA|NA|NA	M	Psort location CytoplasmicMembrane, score 9.26
DNDENEON_01323	78346.BRUM_1493	3.2e-196	691.0	Bifidobacteriales			1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJQB@201174,4CZ1N@85004,COG1004@1,COG1004@2	NA|NA|NA	M	UDP binding domain
DNDENEON_01324	216816.GS08_09775	3.5e-148	532.3	Bifidobacteriales													Bacteria	2I5AE@201174,4D2XE@85004,COG2247@1,COG2247@2	NA|NA|NA	M	Belongs to the glycosyl hydrolase 43 family
DNDENEON_01325	1680.BADO_1521	6.4e-219	766.5	Bifidobacteriales	rgpD		3.6.3.38	ko:K01990,ko:K09689,ko:K09691	ko02010,map02010	M00249,M00250,M00254			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.101,3.A.1.103			Bacteria	2GIVF@201174,4CZ1B@85004,COG1134@1,COG1134@2	NA|NA|NA	GM	ABC transporter, ATP-binding protein
DNDENEON_01326	216816.GS08_09795	1.9e-126	458.8	Bifidobacteriales	rgpC			ko:K01992		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GP5K@201174,4CZ73@85004,COG1682@1,COG1682@2	NA|NA|NA	U	Transport permease protein
DNDENEON_01327	78346.BRUM_1827	0.0	1150.2	Bifidobacteriales	wbbM												Bacteria	2I2GU@201174,4D0KN@85004,COG1442@1,COG1442@2	NA|NA|NA	M	Glycosyl transferase family 8
DNDENEON_01328	1680.BADO_1519	6.6e-171	607.4	Actinobacteria													Bacteria	2GJ38@201174,COG2247@1,COG2247@2,COG2356@1,COG2356@2	NA|NA|NA	L	Protein of unknown function (DUF1524)
DNDENEON_01329	1680.BADO_1518	2e-68	266.5	Actinobacteria													Bacteria	2IG1A@201174,COG2247@1,COG2247@2	NA|NA|NA	M	Putative cell wall binding repeat 2
DNDENEON_01330	216816.GS08_09770	1.5e-137	495.7	Bifidobacteriales	ppm1	GO:0000030,GO:0003674,GO:0003824,GO:0004582,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009605,GO:0009607,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0035821,GO:0043207,GO:0044003,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052564,GO:0052572,GO:0070085,GO:0071704,GO:0071944,GO:0075136,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509		ko:K03820					ko00000,ko01000		GT2	iNJ661.Rv2051c	Bacteria	2I9NQ@201174,4D0NJ@85004,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyl transferase, family 2
DNDENEON_01331	1680.BADO_1516	0.0	1741.1	Bifidobacteriales	wbbM												Bacteria	2I2GT@201174,4D2V5@85004,COG0463@1,COG0463@2,COG1442@1,COG1442@2	NA|NA|NA	M	Glycosyl transferase family 8
DNDENEON_01332	78346.BRUM_1504	5.8e-252	876.7	Bifidobacteriales													Bacteria	2E07M@1,2ICM1@201174,32VVG@2,4D036@85004	NA|NA|NA		
DNDENEON_01333	78346.BRUM_1505	3.5e-168	597.8	Bifidobacteriales													Bacteria	2IER7@201174,4D0M4@85004,COG3274@1,COG3274@2	NA|NA|NA	S	Acyltransferase family
DNDENEON_01334	78346.BRUM_1506	7e-19	99.8	Bifidobacteriales													Bacteria	2I93Y@201174,4D07C@85004,COG2755@1,COG2755@2	NA|NA|NA	E	Carbohydrate esterase, sialic acid-specific acetylesterase
DNDENEON_01335	398513.BBNG_01824	5.9e-156	557.0	Bifidobacteriales	rfbJ												Bacteria	2I2GR@201174,4CZTN@85004,COG0463@1,COG0463@2	NA|NA|NA	M	Glycosyl transferase family 2
DNDENEON_01336	398513.BBNG_01823	2.9e-303	1047.7	Bifidobacteriales	lytC		2.1.1.197,3.2.1.17,3.2.1.96	ko:K01185,ko:K01227,ko:K02169	ko00511,ko00780,ko01100,map00511,map00780,map01100	M00572	R09543	RC00003,RC00460	ko00000,ko00001,ko00002,ko01000				Bacteria	2I2GQ@201174,4D08Z@85004,COG2273@1,COG2273@2,COG3533@1,COG3533@2,COG3757@1,COG3757@2	NA|NA|NA	M	Glycosyl hydrolases family 25
DNDENEON_01337	547043.BIFPSEUDO_04141	9.9e-258	895.6	Bifidobacteriales				ko:K07133					ko00000				Bacteria	2HVUN@201174,4CZHJ@85004,COG1373@1,COG1373@2	NA|NA|NA	S	AAA domain
DNDENEON_01338	547043.BIFPSEUDO_04140	2.3e-61	242.3	Bifidobacteriales													Bacteria	2B5Q5@1,2IPRN@201174,31YJP@2,4D144@85004	NA|NA|NA		
DNDENEON_01339	547043.BIFPSEUDO_04138	1.1e-298	1031.9	Bifidobacteriales			3.1.1.53	ko:K05970					ko00000,ko01000				Bacteria	2I93Y@201174,4D07C@85004,COG2755@1,COG2755@2	NA|NA|NA	E	Carbohydrate esterase, sialic acid-specific acetylesterase
DNDENEON_01340	547043.BIFPSEUDO_04137	5.6e-59	233.4	Bifidobacteriales													Bacteria	2B0X3@1,2GS0B@201174,31T9V@2,4D1HX@85004	NA|NA|NA		
DNDENEON_01342	547043.BIFPSEUDO_04135	2.5e-153	548.5	Bifidobacteriales				ko:K18926		M00715			ko00000,ko00002,ko02000	2.A.1.3.30			Bacteria	2GIZX@201174,4CZ0R@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01343	547043.BIFPSEUDO_03536	0.0	3477.2	Bifidobacteriales	pulA		3.2.1.1,3.2.1.41	ko:K01176,ko:K01200	ko00500,ko01100,ko01110,ko04973,map00500,map01100,map01110,map04973		R02108,R02111,R02112,R11262		ko00000,ko00001,ko01000		CBM48,GH13		Bacteria	2GKK1@201174,4D2UY@85004,COG0366@1,COG0366@2,COG1523@1,COG1523@2	NA|NA|NA	M	Aamy_C
DNDENEON_01344	547043.BIFPSEUDO_03538	0.0	1111.7	Bifidobacteriales	pyrG	GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016020,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	6.3.4.2	ko:K01937	ko00240,ko01100,map00240,map01100	M00052	R00571,R00573	RC00010,RC00074	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1276,iECO103_1326.ECO103_3323,iHN637.CLJU_RS01075,iNJ661.Rv1699,iPC815.YPO3377	Bacteria	2GJ13@201174,4CYWE@85004,COG0504@1,COG0504@2	NA|NA|NA	F	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
DNDENEON_01345	547043.BIFPSEUDO_03539	0.0	1114.8	Bifidobacteriales													Bacteria	2GQ7D@201174,4CZ5A@85004,COG1376@1,COG1376@2	NA|NA|NA	S	L,D-transpeptidase catalytic domain
DNDENEON_01346	566552.BIFCAT_00962	9.6e-291	1005.4	Bifidobacteriales	sufB	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360		ko:K07033,ko:K09014					ko00000				Bacteria	2GKCZ@201174,4CZPQ@85004,COG0719@1,COG0719@2	NA|NA|NA	O	FeS assembly protein SufB
DNDENEON_01347	547043.BIFPSEUDO_03541	1e-234	818.9	Bifidobacteriales	sufD	GO:0006790,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0040007,GO:0043207,GO:0044085,GO:0044237,GO:0044403,GO:0044419,GO:0050896,GO:0051186,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0071840,GO:0075136		ko:K09015					ko00000			iB21_1397.B21_01640,iECBD_1354.ECBD_1964,iECB_1328.ECB_01650,iECD_1391.ECD_01650,iUMNK88_1353.UMNK88_2144	Bacteria	2GJNV@201174,4CZEE@85004,COG0719@1,COG0719@2	NA|NA|NA	O	FeS assembly protein SufD
DNDENEON_01348	547043.BIFPSEUDO_03542	1e-142	512.7	Bifidobacteriales	sufC			ko:K09013					ko00000,ko02000				Bacteria	2GKB7@201174,4CZU1@85004,COG0396@1,COG0396@2	NA|NA|NA	O	FeS assembly ATPase SufC
DNDENEON_01349	547043.BIFPSEUDO_03543	1e-240	839.0	Bifidobacteriales	sufS	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	2.8.1.7,4.4.1.16	ko:K11717	ko00450,ko01100,map00450,map01100		R03599,R11528	RC00961,RC01789,RC02313	ko00000,ko00001,ko01000				Bacteria	2GIVK@201174,4CZIU@85004,COG0520@1,COG0520@2	NA|NA|NA	E	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DNDENEON_01350	547043.BIFPSEUDO_03544	2.6e-97	361.3	Bifidobacteriales	iscU			ko:K04488					ko00000				Bacteria	2IHY9@201174,4CZU5@85004,COG0822@1,COG0822@2	NA|NA|NA	C	SUF system FeS assembly protein, NifU family
DNDENEON_01351	547043.BIFPSEUDO_03546	2.7e-108	397.9	Bifidobacteriales	yitW			ko:K02612	ko00360,ko01120,map00360,map01120		R09838	RC02690	ko00000,ko00001				Bacteria	2IKUH@201174,4CYRH@85004,COG2151@1,COG2151@2	NA|NA|NA	S	Iron-sulfur cluster assembly protein
DNDENEON_01352	547043.BIFPSEUDO_03547	8.1e-243	845.9	Bifidobacteriales	glgC	GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008878,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0070566,GO:0071704,GO:1901576	2.7.7.27	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	M00565	R00948	RC00002	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_2768	Bacteria	2I2EF@201174,4CZ4E@85004,COG0448@1,COG0448@2	NA|NA|NA	H	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
DNDENEON_01353	547043.BIFPSEUDO_03548	3e-162	577.8	Bifidobacteriales	spoU		2.1.1.185	ko:K03218,ko:K03437					ko00000,ko01000,ko03009,ko03016				Bacteria	2GJ12@201174,4CYQ6@85004,COG0566@1,COG0566@2	NA|NA|NA	J	SpoU rRNA Methylase family
DNDENEON_01355	547043.BIFPSEUDO_03550	5.9e-138	496.9	Bifidobacteriales	rsmE		2.1.1.193	ko:K09761					ko00000,ko01000,ko03009				Bacteria	2GTKX@201174,4CZAD@85004,COG1385@1,COG1385@2	NA|NA|NA	J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
DNDENEON_01356	547043.BIFPSEUDO_03551	1.8e-56	224.9	Bifidobacteriales	hinT	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019478,GO:0019752,GO:0043436,GO:0043530,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046144,GO:0046395,GO:0046416,GO:0046436,GO:0055130,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	2.1.1.226,2.1.1.227	ko:K02503,ko:K06442					ko00000,ko01000,ko03009,ko04147				Bacteria	2IHPT@201174,4D130@85004,COG0537@1,COG0537@2	NA|NA|NA	FG	Scavenger mRNA decapping enzyme C-term binding
DNDENEON_01357	547043.BIFPSEUDO_03552	5.9e-208	729.9	Bifidobacteriales	phoH	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K06217					ko00000				Bacteria	2GK0W@201174,4CZJH@85004,COG1702@1,COG1702@2	NA|NA|NA	T	PhoH-like protein
DNDENEON_01358	547043.BIFPSEUDO_03553	9.4e-103	379.4	Bifidobacteriales	ybeY	GO:0000469,GO:0000478,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0016151,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030490,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043244,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141	2.6.99.2,3.5.4.5	ko:K01489,ko:K03474,ko:K03595,ko:K07042	ko00240,ko00750,ko00983,ko01100,map00240,map00750,map00983,map01100	M00124	R01878,R02485,R05838,R08221	RC00074,RC00514,RC01476	ko00000,ko00001,ko00002,ko01000,ko03009,ko03029				Bacteria	2GMUF@201174,4CZJF@85004,COG0319@1,COG0319@2	NA|NA|NA	S	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DNDENEON_01359	547043.BIFPSEUDO_03554	4.1e-251	873.6	Bifidobacteriales	corC	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944											Bacteria	2GIWR@201174,4CZ1W@85004,COG1253@1,COG1253@2	NA|NA|NA	S	CBS domain
DNDENEON_01360	566552.BIFCAT_00948	2e-180	638.3	Bifidobacteriales	era	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043021,GO:0043024,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070181,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:1901363		ko:K03595					ko00000,ko03009,ko03029				Bacteria	2GJJE@201174,4CYZH@85004,COG1159@1,COG1159@2	NA|NA|NA	S	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DNDENEON_01361	547043.BIFPSEUDO_03556	0.0	1354.0	Bifidobacteriales	fadD		6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1			Bacteria	2GIXQ@201174,4CYYJ@85004,COG1022@1,COG1022@2	NA|NA|NA	I	AMP-binding enzyme
DNDENEON_01362	547043.BIFPSEUDO_03557	1.7e-202	711.8	Bifidobacteriales	pntA		1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100		R00112	RC00001	ko00000,ko00001,ko01000				Bacteria	2I2FZ@201174,4CZZ3@85004,COG3288@1,COG3288@2	NA|NA|NA	C	NAD(P) transhydrogenase subunit alpha part 1 K00324
DNDENEON_01363	1435051.BMOU_0956	1.6e-43	181.8	Bifidobacteriales	pntAA		1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100		R00112	RC00001	ko00000,ko00001,ko01000				Bacteria	2IKR9@201174,4D12D@85004,COG3288@1,COG3288@2	NA|NA|NA	C	4TM region of pyridine nucleotide transhydrogenase, mitoch
DNDENEON_01364	547043.BIFPSEUDO_03559	1e-257	895.6	Bifidobacteriales	pntB		1.6.1.2	ko:K00325	ko00760,ko01100,map00760,map01100		R00112	RC00001	ko00000,ko00001,ko01000				Bacteria	2GNKB@201174,4CZF5@85004,COG1282@1,COG1282@2	NA|NA|NA	C	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DNDENEON_01365	547043.BIFPSEUDO_03561	1.9e-269	934.5	Bifidobacteriales													Bacteria	2ANBU@1,2IAHJ@201174,31DA7@2,4CYW4@85004	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_01367	547043.BIFPSEUDO_03563	6.6e-224	783.1	Bifidobacteriales													Bacteria	2HZ9S@201174,4CZ4Z@85004,COG2271@1,COG2271@2	NA|NA|NA	G	Transmembrane secretion effector
DNDENEON_01368	547043.BIFPSEUDO_03564	7e-121	439.9	Bifidobacteriales													Bacteria	2HZJX@201174,4D0QJ@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Bacterial regulatory proteins, tetR family
DNDENEON_01369	566552.BIFCAT_00936	1.1e-39	168.7	Bifidobacteriales	nrdH			ko:K06191					ko00000				Bacteria	2IRCP@201174,4D17U@85004,COG0695@1,COG0695@2	NA|NA|NA	O	Glutaredoxin
DNDENEON_01370	566552.BIFCAT_00935	3.3e-74	284.3	Bifidobacteriales	nrdI			ko:K03647					ko00000				Bacteria	2IM4D@201174,4D0XV@85004,COG1780@1,COG1780@2	NA|NA|NA	F	Probably involved in ribonucleotide reductase function
DNDENEON_01371	547043.BIFPSEUDO_03568	0.0	1462.6	Bifidobacteriales	nrdE	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0015949,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990204	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400			iAPECO1_1312.APECO1_3846,iYO844.BSU17380	Bacteria	2GKX9@201174,4CZF3@85004,COG0209@1,COG0209@2	NA|NA|NA	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DNDENEON_01373	566552.BIFCAT_00933	3.1e-189	667.5	Bifidobacteriales	nrdF	GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0018130,GO:0019438,GO:0019637,GO:0030145,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0090304,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990204	1.17.4.1	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400			iECNA114_1301.ECNA114_2708,iECSF_1327.ECSF_2473,iSFV_1184.SFV_2827,iSF_1195.SF2704,iSFxv_1172.SFxv_2966,iS_1188.S2890	Bacteria	2GK46@201174,4CYQ2@85004,COG0208@1,COG0208@2	NA|NA|NA	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DNDENEON_01374	566552.BIFCAT_00932	0.0	1370.1	Bifidobacteriales	uvrA3			ko:K03701	ko03420,map03420				ko00000,ko00001,ko03400				Bacteria	2GNMW@201174,4CZ5X@85004,COG0178@1,COG0178@2	NA|NA|NA	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DNDENEON_01375	547043.BIFPSEUDO_03573	1.5e-34	152.5	Bacteria				ko:K08177,ko:K19577					ko00000,ko02000	2.A.1.11,2.A.1.2.65			Bacteria	COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01376	547043.BIFPSEUDO_03575	1.1e-194	685.6	Bifidobacteriales				ko:K06889					ko00000				Bacteria	2HZEB@201174,4D02D@85004,COG1073@1,COG1073@2	NA|NA|NA	S	alpha beta
DNDENEON_01377	547043.BIFPSEUDO_03576	1e-89	336.3	Bifidobacteriales	ctc	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02897	ko03010,map03010	M00178			ko00000,ko00001,ko00002,ko03011				Bacteria	2GJPJ@201174,4CZ7W@85004,COG1825@1,COG1825@2	NA|NA|NA	J	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DNDENEON_01378	401473.BDP_0984	1.3e-10	72.4	Bifidobacteriales													Bacteria	2GISN@201174,4CZA9@85004,COG0582@1,COG0582@2	NA|NA|NA	L	Phage integrase family
DNDENEON_01379	401473.BDP_0983	1.2e-157	563.1	Bifidobacteriales	mltE2			ko:K21471					ko00000,ko01000,ko01002,ko01011				Bacteria	2GM11@201174,4D2YH@85004,COG0741@1,COG0741@2,COG0791@1,COG0791@2,COG3942@1,COG3942@2	NA|NA|NA	M	Bacteriophage peptidoglycan hydrolase
DNDENEON_01382	401473.BDP_0980	4.6e-102	378.6	Bifidobacteriales													Bacteria	291ID@1,2ISKB@201174,2ZP4W@2,4D18I@85004	NA|NA|NA		
DNDENEON_01383	401473.BDP_0979	3.2e-206	724.5	Bifidobacteriales													Bacteria	29ZCV@1,2HZK2@201174,30MBH@2,4D0R5@85004	NA|NA|NA		
DNDENEON_01388	401473.BDP_0973	4.9e-24	116.7	Bacteria													Bacteria	2EIAW@1,33C2A@2	NA|NA|NA		
DNDENEON_01389	401473.BDP_0972	2.4e-164	584.7	Bacteria													Bacteria	2BTMH@1,32NU8@2	NA|NA|NA		
DNDENEON_01390	401473.BDP_0972	9e-13	80.5	Bacteria													Bacteria	2BTMH@1,32NU8@2	NA|NA|NA		
DNDENEON_01392	1384484.AEQU_2089	6.4e-76	291.2	Coriobacteriia													Bacteria	2HUV3@201174,4CVR5@84998,COG3550@1,COG3550@2	NA|NA|NA	S	Pfam:CtkA_N
DNDENEON_01394	401473.BDP_0966	3.9e-61	241.9	Bifidobacteriales				ko:K03646					ko00000,ko02000	2.C.1.2			Bacteria	2DDMI@1,2ICIR@201174,2ZIJN@2,4D112@85004	NA|NA|NA		
DNDENEON_01395	561180.BIFGAL_03249	0.0	1550.4	Bifidobacteriales	XK27_00515												Bacteria	2HRQY@201174,4CYQ9@85004,COG3087@1,COG3087@2	NA|NA|NA	D	Cell surface antigen C-terminus
DNDENEON_01396	1688.BCUN_0552	2.7e-97	362.8	Bacteria													Bacteria	COG4932@1,COG4932@2	NA|NA|NA	M	domain protein
DNDENEON_01397	547043.BIFPSEUDO_04098	1.3e-76	292.4	Bifidobacteriales													Bacteria	2DNNA@1,2ISEY@201174,32Y8E@2,4D0R1@85004	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_01398	547043.BIFPSEUDO_04099	9.8e-173	612.8	Bifidobacteriales			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	2GNWT@201174,4CZMM@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_01399	547043.BIFPSEUDO_04100	0.0	1550.4	Bifidobacteriales	inlJ			ko:K07114					ko00000,ko02000	1.A.13.2.2,1.A.13.2.3			Bacteria	2I2FM@201174,4CZ4I@85004,COG2304@1,COG2304@2,COG4932@1,COG4932@2	NA|NA|NA	M	domain protein
DNDENEON_01400	547043.BIFPSEUDO_04102	7.6e-259	899.4	Bifidobacteriales													Bacteria	2GP68@201174,4CZV4@85004,COG4932@1,COG4932@2	NA|NA|NA	M	LPXTG cell wall anchor motif
DNDENEON_01401	547043.BIFPSEUDO_04104	2.5e-89	334.7	Bifidobacteriales													Bacteria	2ASX6@1,2IHV1@201174,31ICR@2,4D0WZ@85004	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_01402	547043.BIFPSEUDO_04106	9.9e-275	952.2	Bifidobacteriales	cycA	GO:0001761,GO:0001762,GO:0003333,GO:0003674,GO:0005215,GO:0005326,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015180,GO:0015187,GO:0015238,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015808,GO:0015816,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0022858,GO:0022889,GO:0032328,GO:0032329,GO:0034220,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0042940,GO:0042941,GO:0042942,GO:0042943,GO:0042944,GO:0042945,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903825,GO:1905039		ko:K03293,ko:K11737					ko00000,ko02000	2.A.3.1,2.A.3.1.7		iECO111_1330.ECO111_5093,iECO26_1355.ECO26_5376,iEcHS_1320.EcHS_A4458,iSbBS512_1146.SbBS512_E4749,iYL1228.KPN_04601	Bacteria	2GJ0X@201174,4CZAY@85004,COG1113@1,COG1113@2	NA|NA|NA	E	Amino acid permease
DNDENEON_01403	547043.BIFPSEUDO_04107	1.2e-166	592.4	Bifidobacteriales	thiG	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.8.1.10	ko:K03149	ko00730,ko01100,map00730,map01100		R10247	RC03096,RC03097,RC03461	ko00000,ko00001,ko01000			iECABU_c1320.ECABU_c45060,iECO26_1355.ECO26_5099,ic_1306.c4947	Bacteria	2GM62@201174,4CZ4A@85004,COG2022@1,COG2022@2	NA|NA|NA	H	Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S
DNDENEON_01404	547043.BIFPSEUDO_04108	8.4e-128	463.0	Bifidobacteriales	thiF		2.7.7.73,2.7.7.80	ko:K03148,ko:K21029	ko00730,ko01100,ko04122,map00730,map01100,map04122		R07459	RC00043	ko00000,ko00001,ko01000				Bacteria	2GJB6@201174,4D06G@85004,COG0476@1,COG0476@2	NA|NA|NA	H	ThiF family
DNDENEON_01405	547043.BIFPSEUDO_04109	3.8e-26	123.6	Bifidobacteriales	thiS		2.8.1.10	ko:K03149,ko:K03154	ko00730,ko01100,ko04122,map00730,map01100,map04122		R10247	RC03096,RC03097,RC03461	ko00000,ko00001,ko01000				Bacteria	2GSKM@201174,4D1GS@85004,COG2104@1,COG2104@2	NA|NA|NA	H	ThiS family
DNDENEON_01406	566552.BIFCAT_00134	5.3e-179	633.6	Bifidobacteriales			1.1.1.65	ko:K05275	ko00750,ko01100,ko01120,map00750,map01100,map01120		R01708	RC00116	ko00000,ko00001,ko01000				Bacteria	2GJ6R@201174,4CZ9P@85004,COG0667@1,COG0667@2	NA|NA|NA	C	Aldo/keto reductase family
DNDENEON_01407	1435051.BMOU_1440	1.9e-57	228.8	Bifidobacteriales	ydgJ												Bacteria	2IMKE@201174,4CYZZ@85004,COG1846@1,COG1846@2	NA|NA|NA	K	helix_turn_helix multiple antibiotic resistance protein
DNDENEON_01408	78345.BMERY_0521	3.5e-285	987.3	Bifidobacteriales	lmrA1			ko:K02021,ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.21			Bacteria	2GITR@201174,4CYYV@85004,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
DNDENEON_01409	78345.BMERY_0522	0.0	1078.5	Bifidobacteriales	lmrA2			ko:K06147					ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21			Bacteria	2GITR@201174,4CZTU@85004,COG1132@1,COG1132@2	NA|NA|NA	V	ABC transporter transmembrane region
DNDENEON_01410	1435051.BMOU_1444	9e-117	426.8	Bifidobacteriales	apbE		2.7.1.180	ko:K03734					ko00000,ko01000				Bacteria	2H8YU@201174,4CZW7@85004,COG1477@1,COG1477@2	NA|NA|NA	H	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
DNDENEON_01411	1435051.BMOU_1445	4.4e-237	827.0	Bifidobacteriales				ko:K03292					ko00000	2.A.2			Bacteria	2HZ98@201174,4CZ0N@85004,COG2211@1,COG2211@2	NA|NA|NA	G	MFS/sugar transport protein
DNDENEON_01412	566552.BIFCAT_00140	3.7e-294	1016.9	Bifidobacteriales	efeU_1			ko:K07243					ko00000,ko02000	2.A.108.1,2.A.108.2			Bacteria	2GJ22@201174,4D01C@85004,COG0672@1,COG0672@2	NA|NA|NA	P	Iron permease FTR1 family
DNDENEON_01413	547043.BIFPSEUDO_04118	1.4e-92	345.9	Bifidobacteriales	tpd			ko:K07230					ko00000,ko02000	2.A.108.2.10,2.A.108.2.4,2.A.108.2.9			Bacteria	2GNAD@201174,4CZCG@85004,COG3470@1,COG3470@2	NA|NA|NA	P	Fe2+ transport protein
DNDENEON_01414	547043.BIFPSEUDO_04121	3.6e-230	803.9	Bifidobacteriales													Bacteria	2GMS6@201174,4CZ19@85004,COG4393@1,COG4393@2	NA|NA|NA	S	Predicted membrane protein (DUF2318)
DNDENEON_01415	566552.BIFCAT_00144	1.5e-218	765.4	Bifidobacteriales	macB_2			ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2I91N@201174,4CZGK@85004,COG0577@1,COG0577@2	NA|NA|NA	V	ABC transporter permease
DNDENEON_01417	547043.BIFPSEUDO_04123	1.6e-201	708.8	Bifidobacteriales	Z012_06715			ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GIRW@201174,4CZEZ@85004,COG0577@1,COG0577@2	NA|NA|NA	V	FtsX-like permease family
DNDENEON_01418	566552.BIFCAT_00146	9e-150	536.2	Bifidobacteriales	macB			ko:K02003,ko:K09810	ko02010,map02010	M00255,M00258			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.125			Bacteria	2GK3I@201174,4CYTA@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
DNDENEON_01419	547043.BIFPSEUDO_04125	1.1e-61	243.0	Bifidobacteriales				ko:K03612					ko00000				Bacteria	2IQ4E@201174,4D0YM@85004,COG3976@1,COG3976@2	NA|NA|NA	S	FMN_bind
DNDENEON_01420	566552.BIFCAT_00148	1.2e-88	332.8	Bifidobacteriales													Bacteria	2HZI8@201174,4D0IS@85004,COG1309@1,COG1309@2	NA|NA|NA	K	Psort location Cytoplasmic, score 8.87
DNDENEON_01421	547043.BIFPSEUDO_04127	1.1e-271	942.6	Bifidobacteriales	pip			ko:K01421					ko00000				Bacteria	2GKEM@201174,4CZ2A@85004,COG1511@1,COG1511@2	NA|NA|NA	S	YhgE Pip domain protein
DNDENEON_01422	566552.BIFCAT_00150	0.0	1291.2	Bifidobacteriales	pip			ko:K01421					ko00000				Bacteria	2GKEM@201174,4CZ9R@85004,COG1511@1,COG1511@2	NA|NA|NA	S	YhgE Pip domain protein
DNDENEON_01423	547043.BIFPSEUDO_04129	2.9e-224	784.3	Bifidobacteriales													Bacteria	2IBSV@201174,4D05G@85004,COG4905@1,COG4905@2	NA|NA|NA	S	Putative ABC-transporter type IV
DNDENEON_01424	547043.BIFPSEUDO_04130	6e-38	162.9	Bifidobacteriales	nrdH			ko:K06191					ko00000				Bacteria	2IRCP@201174,4D17U@85004,COG0695@1,COG0695@2	NA|NA|NA	O	Glutaredoxin
DNDENEON_01425	547043.BIFPSEUDO_04133	6.1e-58	230.3	Bifidobacteriales													Bacteria	2H1NZ@201174,4D23P@85004,COG2247@1,COG2247@2	NA|NA|NA	M	cell wall binding repeat
DNDENEON_01426	547043.BIFPSEUDO_02932	0.0	1293.5	Bifidobacteriales	pknL		2.7.11.1	ko:K12132					ko00000,ko01000,ko01001				Bacteria	2GJ1J@201174,4CYTR@85004,COG0515@1,COG0515@2,COG2815@1,COG2815@2	NA|NA|NA	KLT	PASTA
DNDENEON_01427	547043.BIFPSEUDO_02931	2e-197	694.9	Bifidobacteriales	crtE		2.5.1.1,2.5.1.10,2.5.1.29	ko:K13787,ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364,M00365,M00366	R01658,R02003,R02061	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006				Bacteria	2GJEK@201174,4CZQV@85004,COG0142@1,COG0142@2	NA|NA|NA	H	Belongs to the FPP GGPP synthase family
DNDENEON_01428	547043.BIFPSEUDO_02930	2.5e-118	431.4	Bifidobacteriales													Bacteria	2B5AP@1,2IF9M@201174,31Y4U@2,4D15J@85004	NA|NA|NA		
DNDENEON_01429	547043.BIFPSEUDO_02929	3.4e-173	614.8	Bifidobacteriales	sigA			ko:K03086					ko00000,ko03021				Bacteria	2GK3Z@201174,4CZQC@85004,COG0568@1,COG0568@2	NA|NA|NA	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
DNDENEON_01430	547043.BIFPSEUDO_02928	0.0	1518.1	Bifidobacteriales	gyrB2		5.99.1.3	ko:K02470					ko00000,ko01000,ko03032,ko03400				Bacteria	2GM1E@201174,4CYXR@85004,COG0187@1,COG0187@2	NA|NA|NA	L	DNA topoisomerase (ATP-hydrolyzing)
DNDENEON_01431	547043.BIFPSEUDO_02927	1.5e-222	778.5	Bifidobacteriales													Bacteria	2HWKN@201174,4CYRZ@85004,COG0738@1,COG0738@2	NA|NA|NA	G	Major Facilitator Superfamily
DNDENEON_01432	547043.BIFPSEUDO_02926	8.1e-241	839.3	Bifidobacteriales													Bacteria	2I4ZW@201174,4CZGX@85004,COG0642@1,COG2205@2	NA|NA|NA	T	PhoQ Sensor
DNDENEON_01433	547043.BIFPSEUDO_02924	2.4e-79	301.6	Bifidobacteriales													Bacteria	2DU83@1,2IMPR@201174,33PAY@2,4D19W@85004	NA|NA|NA	S	Protein of unknown function (DUF2975)
DNDENEON_01434	547043.BIFPSEUDO_02923	5.8e-32	142.9	Bifidobacteriales	yozG			ko:K07727					ko00000,ko03000				Bacteria	2GQZM@201174,4D1EQ@85004,COG3655@1,COG3655@2	NA|NA|NA	K	Cro/C1-type HTH DNA-binding domain
DNDENEON_01435	547043.BIFPSEUDO_02922	0.0	3025.7	Bifidobacteriales	lhr	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360		ko:K03724					ko00000,ko01000,ko03400				Bacteria	2GJG3@201174,4D01F@85004,COG1201@1,COG1201@2	NA|NA|NA	L	DEAD DEAH box helicase
DNDENEON_01436	547043.BIFPSEUDO_02921	0.0	1664.0	Bifidobacteriales	gyrA	GO:0005575,GO:0005622,GO:0005623,GO:0009330,GO:0032991,GO:0044424,GO:0044464	5.99.1.3	ko:K02469,ko:K02621					ko00000,ko01000,ko02048,ko03032,ko03036,ko03400				Bacteria	2GJ2Q@201174,4CYVH@85004,COG0188@1,COG0188@2	NA|NA|NA	L	DNA topoisomerase (ATP-hydrolyzing)
DNDENEON_01437	547043.BIFPSEUDO_02920	5.2e-234	816.6	Bifidobacteriales													Bacteria	2GISU@201174,4CZCK@85004,COG1524@1,COG1524@2	NA|NA|NA	S	Type I phosphodiesterase / nucleotide pyrophosphatase
DNDENEON_01438	547043.BIFPSEUDO_02919	7e-147	526.9	Bifidobacteriales													Bacteria	29W72@1,2HZB4@201174,30HS9@2,4CZFJ@85004	NA|NA|NA	S	Protein of unknown function (DUF3071)
DNDENEON_01439	547043.BIFPSEUDO_02918	1e-47	195.7	Bifidobacteriales													Bacteria	2ATJW@1,2I80Y@201174,3361K@2,4D10Y@85004	NA|NA|NA	S	Domain of unknown function (DUF4193)
DNDENEON_01440	547043.BIFPSEUDO_02917	2.5e-83	314.7	Bifidobacteriales	dut	GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	3.6.1.23,4.1.1.36,6.3.2.5	ko:K01520,ko:K13038	ko00240,ko00770,ko00983,ko01100,map00240,map00770,map00983,map01100	M00053,M00120	R02100,R03269,R04231,R11896	RC00002,RC00064,RC00090,RC00822	ko00000,ko00001,ko00002,ko01000,ko03400				Bacteria	2IHYY@201174,4CZUJ@85004,COG0756@1,COG0756@2	NA|NA|NA	F	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
DNDENEON_01441	547043.BIFPSEUDO_02916	0.0	1530.0	Bifidobacteriales	relA	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009259,GO:0009260,GO:0009267,GO:0009405,GO:0009605,GO:0009987,GO:0009991,GO:0015968,GO:0015969,GO:0015970,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030145,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034035,GO:0034036,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0042578,GO:0042594,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044419,GO:0044464,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051704,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.7.6.5,3.1.7.2	ko:K00951,ko:K01139	ko00230,map00230		R00336,R00429	RC00002,RC00078	ko00000,ko00001,ko01000,ko03009				Bacteria	2GJYQ@201174,4CZCW@85004,COG0317@1,COG0317@2	NA|NA|NA	KT	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DNDENEON_01442	547043.BIFPSEUDO_02914	1.4e-140	506.1	Bifidobacteriales	ppiA	GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030312,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0071704,GO:0071944,GO:0140096,GO:1901564	5.2.1.8	ko:K01802,ko:K03767,ko:K03768	ko01503,ko04217,map01503,map04217				ko00000,ko00001,ko01000,ko03110,ko04147				Bacteria	2IFUE@201174,4CZSU@85004,COG0652@1,COG0652@2	NA|NA|NA	G	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DNDENEON_01443	398513.BBNG_01169	5.1e-07	60.1	Bifidobacteriales													Bacteria	2B56E@1,2H002@201174,31Y0A@2,4D1NU@85004	NA|NA|NA		
DNDENEON_01444	398513.BBNG_01170	5.2e-65	253.4	Bifidobacteriales													Bacteria	2B93G@1,2H6SR@201174,322EB@2,4D2AZ@85004	NA|NA|NA		
DNDENEON_01445	398513.BBNG_01172	4.7e-118	430.6	Bifidobacteriales													Bacteria	2B5N5@1,2GZBA@201174,31YHE@2,4D2BD@85004	NA|NA|NA		
DNDENEON_01446	398513.BBNG_01173	1.3e-27	128.3	Bifidobacteriales													Bacteria	29ZZ8@1,2HC0R@201174,30N10@2,4D2Q7@85004	NA|NA|NA		
DNDENEON_01447	398513.BBNG_01174	8e-15	85.5	Bifidobacteriales													Bacteria	2BBK1@1,2HA5M@201174,3253V@2,4D2NN@85004	NA|NA|NA		
DNDENEON_01448	547043.BIFPSEUDO_02907	2.1e-184	651.7	Bifidobacteriales													Bacteria	29W79@1,2IC42@201174,30HSG@2,4CZZM@85004	NA|NA|NA	S	Helix-turn-helix domain
DNDENEON_01449	547043.BIFPSEUDO_02906	4.3e-42	176.8	Bifidobacteriales													Bacteria	2BPM0@1,2H71R@201174,32IE1@2,4D2AS@85004	NA|NA|NA		
DNDENEON_01450	547043.BIFPSEUDO_02905	4.1e-89	334.0	Bifidobacteriales													Bacteria	2BMV3@1,2IPYW@201174,32GEK@2,4D118@85004	NA|NA|NA	S	Transcription factor WhiB
DNDENEON_01451	547043.BIFPSEUDO_02904	1e-103	382.9	Bifidobacteriales	parA			ko:K03496					ko00000,ko03036,ko04812				Bacteria	2ICWE@201174,4D14U@85004,COG1192@1,COG1192@2	NA|NA|NA	D	AAA domain
DNDENEON_01452	547043.BIFPSEUDO_02903	6.4e-27	126.7	Bifidobacteriales													Bacteria	2BKNZ@1,2GYJH@201174,32F4I@2,4D1UA@85004	NA|NA|NA		
DNDENEON_01453	547043.BIFPSEUDO_02902	9.2e-58	230.7	Bifidobacteriales				ko:K03646					ko00000,ko02000	2.C.1.2			Bacteria	2DDMI@1,2ICIR@201174,2ZIJN@2,4D112@85004	NA|NA|NA		
DNDENEON_01454	547043.BIFPSEUDO_03964	0.0	2053.5	Bifidobacteriales													Bacteria	2HRQY@201174,4CYQ9@85004,COG3087@1,COG3087@2	NA|NA|NA	D	Cell surface antigen C-terminus
DNDENEON_01456	1435051.BMOU_0855	5.2e-26	123.2	Bifidobacteriales													Bacteria	2EJJI@1,2GW42@201174,33DAG@2,4D1C7@85004	NA|NA|NA		
DNDENEON_01457	547043.BIFPSEUDO_03957	5.3e-145	520.4	Bifidobacteriales													Bacteria	2B0U3@1,2IDXF@201174,31T6M@2,4D095@85004	NA|NA|NA		
DNDENEON_01458	547043.BIFPSEUDO_03956	2.3e-62	244.6	Bifidobacteriales													Bacteria	29WJA@1,2IS86@201174,30I5I@2,4D16N@85004	NA|NA|NA	S	PrgI family protein
DNDENEON_01459	1435051.BMOU_0858	0.0	1265.4	Bifidobacteriales	trsE												Bacteria	2H6W2@201174,4CYWV@85004,COG3451@1,COG3451@2	NA|NA|NA	U	type IV secretory pathway VirB4
DNDENEON_01460	547043.BIFPSEUDO_03953	1.3e-259	902.1	Bifidobacteriales	isp2		3.2.1.96	ko:K01227,ko:K21471	ko00511,map00511				ko00000,ko00001,ko01000,ko01002,ko01011				Bacteria	2I9VT@201174,4D074@85004,COG0741@1,COG0741@2,COG3942@1,COG3942@2	NA|NA|NA	M	CHAP domain
DNDENEON_01461	547043.BIFPSEUDO_03952	2e-97	361.7	Bifidobacteriales													Bacteria	2A11J@1,2HBVZ@201174,30P75@2,4D2PG@85004	NA|NA|NA		
DNDENEON_01462	547043.BIFPSEUDO_03951	7.8e-130	470.7	Bifidobacteriales				ko:K03646					ko00000,ko02000	2.C.1.2			Bacteria	2DDMI@1,2ICIR@201174,2ZIJN@2,4D112@85004	NA|NA|NA		
DNDENEON_01463	1193128.A200_00060	8.6e-100	370.9	Actinobacteria				ko:K03497					ko00000,ko03000,ko03036,ko04812				Bacteria	2GXYQ@201174,COG1475@1,COG1475@2	NA|NA|NA	K	DNA binding
DNDENEON_01464	1193128.A200_00055	4.8e-102	377.9	Actinobacteria	dam2		2.1.1.72	ko:K06223	ko03430,map03430				ko00000,ko00001,ko01000,ko02048,ko03032,ko03400				Bacteria	2I9P4@201174,COG0338@1,COG0338@2	NA|NA|NA	L	D12 class N6 adenine-specific DNA methyltransferase
DNDENEON_01466	547043.BIFPSEUDO_03950	0.0	1159.1	Bifidobacteriales				ko:K03205	ko03070,map03070	M00333			ko00000,ko00001,ko00002,ko02044	3.A.7			Bacteria	2HZ9D@201174,4CZ1V@85004,COG3505@1,COG3505@2	NA|NA|NA	U	Type IV secretory system Conjugative DNA transfer
DNDENEON_01467	547043.BIFPSEUDO_03949	9e-34	149.4	Bifidobacteriales													Bacteria	2A36R@1,2HD2U@201174,30RN9@2,4D2P3@85004	NA|NA|NA		
DNDENEON_01468	547043.BIFPSEUDO_03948	5.6e-36	156.8	Bifidobacteriales													Bacteria	2BAM6@1,2H8UR@201174,3241Z@2,4D2EM@85004	NA|NA|NA		
DNDENEON_01469	479437.Elen_0870	0.0	1224.9	Actinobacteria	XK27_00500												Bacteria	2HCII@201174,COG0553@1,COG0553@2,COG0827@1,COG0827@2,COG4646@1,COG4646@2	NA|NA|NA	KL	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DNDENEON_01470	547043.BIFPSEUDO_03947	1.3e-287	995.3	Bifidobacteriales													Bacteria	29W77@1,2IKED@201174,30HSE@2,4D0WN@85004	NA|NA|NA		
DNDENEON_01471	398513.BBNG_01189	3.1e-163	581.3	Bifidobacteriales													Bacteria	2BIEZ@1,2GSHH@201174,32CMF@2,4D1JU@85004	NA|NA|NA	S	Protein of unknown function (DUF3801)
DNDENEON_01472	398513.BBNG_01188	2e-249	868.2	Bifidobacteriales	ltrBE1												Bacteria	2GKSD@201174,4CZZ8@85004,COG3843@1,COG3843@2	NA|NA|NA	U	Relaxase/Mobilisation nuclease domain
DNDENEON_01473	78346.BRUM_1756	7.6e-43	179.9	Bifidobacteriales													Bacteria	2B58E@1,2IKCV@201174,31Y2D@2,4D0XS@85004	NA|NA|NA	S	Bacterial mobilisation protein (MobC)
DNDENEON_01474	547043.BIFPSEUDO_03943	2.5e-42	177.6	Bifidobacteriales													Bacteria	2IQ9G@201174,4D190@85004,COG1396@1,COG1396@2	NA|NA|NA	K	Protein of unknown function (DUF2442)
DNDENEON_01475	547043.BIFPSEUDO_03942	2.1e-44	184.5	Bifidobacteriales													Bacteria	2B2EW@1,2GWDP@201174,31UZI@2,4D1SW@85004	NA|NA|NA	S	Domain of unknown function (DUF4160)
DNDENEON_01477	398513.BBNG_01184	5.3e-31	140.2	Bifidobacteriales													Bacteria	2BA00@1,2H816@201174,323DN@2,4D2ES@85004	NA|NA|NA		
DNDENEON_01478	398513.BBNG_01184	6e-52	210.3	Bifidobacteriales													Bacteria	2BA00@1,2H816@201174,323DN@2,4D2ES@85004	NA|NA|NA		
DNDENEON_01479	398513.BBNG_01183	0.0	1354.0	Bifidobacteriales	topB		5.99.1.2	ko:K03169					ko00000,ko01000,ko03032				Bacteria	2GJU7@201174,4D044@85004,COG0550@1,COG0550@2	NA|NA|NA	L	DNA topoisomerase
DNDENEON_01482	401473.BDP_0920	2e-72	278.9	Bifidobacteriales													Bacteria	2E5BJ@1,2IMHH@201174,3303M@2,4D12T@85004	NA|NA|NA		
DNDENEON_01483	547043.BIFPSEUDO_03932	4.5e-65	253.8	Bifidobacteriales													Bacteria	2A1JX@1,2IKIB@201174,30PTV@2,4D0ZU@85004	NA|NA|NA		
DNDENEON_01484	547043.BIFPSEUDO_03931	8.7e-67	259.6	Bifidobacteriales													Bacteria	2AYDR@1,2IS31@201174,31QGN@2,4D1AE@85004	NA|NA|NA		
DNDENEON_01485	547043.BIFPSEUDO_03930	9.6e-175	619.4	Bifidobacteriales													Bacteria	2ICFW@201174,4D01T@85004,COG3177@1,COG3177@2	NA|NA|NA	S	Fic/DOC family
DNDENEON_01486	1321778.HMPREF1982_02288	1.3e-08	65.9	unclassified Clostridiales			3.1.21.4	ko:K01155					ko00000,ko01000,ko02048				Bacteria	1TT83@1239,248CV@186801,26AWH@186813,COG1002@1,COG1002@2	NA|NA|NA	V	restriction endonuclease
DNDENEON_01487	216816.GS08_05960	5.2e-224	783.5	Bifidobacteriales													Bacteria	2IEM1@201174,4CZPH@85004,COG3550@1,COG3550@2	NA|NA|NA	S	HipA-like C-terminal domain
DNDENEON_01488	1313172.YM304_02230	6.7e-109	401.4	Actinobacteria													Bacteria	2I3XK@201174,COG0827@1,COG0827@2	NA|NA|NA	L	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DNDENEON_01489	443143.GM18_1297	1.3e-40	173.3	Deltaproteobacteria			3.1.21.4	ko:K01155					ko00000,ko01000,ko02048				Bacteria	1RCXY@1224,28KNW@1,2WNUZ@28221,2ZA74@2,42S71@68525	NA|NA|NA	L	Restriction endonuclease XhoI
DNDENEON_01491	742818.HMPREF9451_00959	1.4e-74	286.2	Actinobacteria													Bacteria	28MIG@1,2IJSH@201174,2ZAV8@2	NA|NA|NA	S	EcsC protein family
DNDENEON_01493	398513.BBNG_01193	2.9e-232	810.8	Bifidobacteriales													Bacteria	2GISN@201174,4CZA9@85004,COG0582@1,COG0582@2	NA|NA|NA	L	Phage integrase family
DNDENEON_01494	547043.BIFPSEUDO_03922	5.7e-237	826.6	Bifidobacteriales	dinF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03327					ko00000,ko02000	2.A.66.1			Bacteria	2GJE3@201174,4CZ75@85004,COG0534@1,COG0534@2	NA|NA|NA	V	MatE
DNDENEON_01495	78346.BRUM_0472	9.1e-182	642.9	Bifidobacteriales			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	2GNWT@201174,4CZMM@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_01496	547043.BIFPSEUDO_04096	3.3e-227	794.3	Bifidobacteriales				ko:K03455					ko00000	2.A.37			Bacteria	2GIRC@201174,4CZGM@85004,COG0475@1,COG0475@2	NA|NA|NA	P	Sodium/hydrogen exchanger family
DNDENEON_01497	547043.BIFPSEUDO_04095	0.0	1618.2	Bifidobacteriales				ko:K02004,ko:K06994		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2I2FK@201174,4CZJR@85004,COG0577@1,COG0577@2,COG1511@1,COG1511@2	NA|NA|NA	V	FtsX-like permease family
DNDENEON_01498	547043.BIFPSEUDO_04093	4.1e-270	936.8	Bifidobacteriales	aroP	GO:0003333,GO:0003674,GO:0005215,GO:0005302,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008104,GO:0008150,GO:0008320,GO:0008324,GO:0008509,GO:0008514,GO:0008565,GO:0009977,GO:0015031,GO:0015075,GO:0015171,GO:0015173,GO:0015179,GO:0015192,GO:0015196,GO:0015238,GO:0015291,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015711,GO:0015801,GO:0015807,GO:0015823,GO:0015827,GO:0015828,GO:0015833,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0033036,GO:0034220,GO:0042221,GO:0042493,GO:0042886,GO:0042887,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903825,GO:1904680,GO:1905039		ko:K03293,ko:K11732,ko:K11734					ko00000,ko02000	2.A.3.1,2.A.3.1.1,2.A.3.1.3		iAPECO1_1312.APECO1_1472,iECW_1372.ECW_m0628,iEcE24377_1341.EcE24377A_0114,iEcolC_1368.EcolC_3070,iJN746.PP_4495,iUTI89_1310.UTI89_C0576,iWFL_1372.ECW_m0628	Bacteria	2GJ0X@201174,4CZ4X@85004,COG1113@1,COG1113@2	NA|NA|NA	E	aromatic amino acid transport protein AroP K03293
DNDENEON_01499	1680.BADO_0080	8.3e-12	76.3	Bifidobacteriales													Bacteria	2IGDH@201174,4D0WB@85004,COG5578@1,COG5578@2	NA|NA|NA	S	Protein of unknown function, DUF624
DNDENEON_01500	547043.BIFPSEUDO_04091	2.5e-189	667.9	Bifidobacteriales													Bacteria	2GJHF@201174,4CZCC@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_01501	547043.BIFPSEUDO_04090	9.8e-40	169.1	Bifidobacteriales													Bacteria	2GM69@201174,4D09M@85004,COG3250@1,COG3250@2	NA|NA|NA	G	beta-mannosidase
DNDENEON_01502	547043.BIFPSEUDO_04089	0.0	1245.3	Bifidobacteriales			3.1.1.53	ko:K05970					ko00000,ko01000				Bacteria	2I2FJ@201174,4D2US@85004,COG2755@1,COG2755@2	NA|NA|NA	E	Carbohydrate esterase, sialic acid-specific acetylesterase
DNDENEON_01503	547043.BIFPSEUDO_04087	4e-203	713.8	Bifidobacteriales	ilvC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008152,GO:0008677,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071944	1.1.1.86	ko:K00053	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R03051,R04439,R04440,R05068,R05069,R05071	RC00726,RC00836,RC00837,RC01726	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKXA@201174,4CZBR@85004,COG0059@1,COG0059@2	NA|NA|NA	H	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DNDENEON_01504	547043.BIFPSEUDO_04085	5.3e-203	713.4	Bifidobacteriales	ilvC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008152,GO:0008677,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071944	1.1.1.86	ko:K00053	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R03051,R04439,R04440,R05068,R05069,R05071	RC00726,RC00836,RC00837,RC01726	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKXA@201174,4CZBR@85004,COG0059@1,COG0059@2	NA|NA|NA	H	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DNDENEON_01505	547043.BIFPSEUDO_04084	3.5e-252	877.1	Bifidobacteriales	yhjE			ko:K03762					ko00000,ko02000	2.A.1.6.4			Bacteria	2GIYR@201174,4CYY8@85004,COG0477@1,COG0477@2	NA|NA|NA	EGP	Sugar (and other) transporter
DNDENEON_01506	547043.BIFPSEUDO_04081	9.7e-270	935.6	Bifidobacteriales	scrT												Bacteria	2GJZG@201174,4CZ93@85004,COG2211@1,COG2211@2	NA|NA|NA	G	Transporter major facilitator family protein
DNDENEON_01507	547043.BIFPSEUDO_04075	4.9e-10	69.3	Bifidobacteriales													Bacteria	2IHJ3@201174,4D0SU@85004,COG5578@1,COG5578@2	NA|NA|NA	S	Protein of unknown function, DUF624
DNDENEON_01508	547043.BIFPSEUDO_04074	3.1e-297	1026.9	Bifidobacteriales	gtfA	GO:0003674,GO:0003824,GO:0004645,GO:0005975,GO:0005976,GO:0006066,GO:0006073,GO:0008150,GO:0008152,GO:0009018,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0019400,GO:0019751,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0051472,GO:0071704,GO:1901615	2.4.1.329,2.4.1.7	ko:K00690,ko:K21350	ko00500,map00500		R00803	RC00028	ko00000,ko00001,ko01000		GH13		Bacteria	2GNEC@201174,4CZ4T@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Domain of unknown function (DUF1964)
DNDENEON_01509	547043.BIFPSEUDO_04073	1.1e-195	689.1	Bifidobacteriales				ko:K02529,ko:K03484					ko00000,ko03000				Bacteria	2GMHV@201174,4CZ3G@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_01510	566552.BIFCAT_00107	5.9e-28	129.4	Bifidobacteriales				ko:K01999	ko02010,ko02024,map02010,map02024	M00237			ko00000,ko00001,ko00002,ko02000	3.A.1.4			Bacteria	2GM00@201174,4CZSH@85004,COG0683@1,COG0683@2	NA|NA|NA	E	Receptor family ligand binding region
DNDENEON_01511	216816.GS08_00515	1.1e-23	115.5	Bifidobacteriales	crcB			ko:K06199					ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3			Bacteria	2IC26@201174,4D14T@85004,COG0239@1,COG0239@2	NA|NA|NA	U	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DNDENEON_01512	547043.BIFPSEUDO_03966	0.0	1903.3	Bifidobacteriales			3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110		R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000		GH3		Bacteria	2GQQR@201174,4CZ02@85004,COG1472@1,COG1472@2	NA|NA|NA	G	Fibronectin type III-like domain
DNDENEON_01513	547043.BIFPSEUDO_03968	0.0	1222.6	Bifidobacteriales													Bacteria	2GIV0@201174,4CYQG@85004,COG0515@1,COG0515@2	NA|NA|NA	KLT	Protein tyrosine kinase
DNDENEON_01514	547043.BIFPSEUDO_03969	7.5e-151	540.0	Bifidobacteriales													Bacteria	2GN3N@201174,4CZBD@85004,COG1651@1,COG1651@2	NA|NA|NA	O	Thioredoxin
DNDENEON_01516	547043.BIFPSEUDO_03971	1.6e-197	695.7	Bifidobacteriales													Bacteria	2H4RU@201174,4CYY0@85004,COG3583@1,COG3583@2	NA|NA|NA	S	G5
DNDENEON_01517	547043.BIFPSEUDO_03972	7.8e-166	589.7	Bifidobacteriales	ksgA	GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.182,2.1.1.184	ko:K00561,ko:K02528			R10716	RC00003,RC03257	br01600,ko00000,ko01000,ko01504,ko03009				Bacteria	2GKBT@201174,4CYS9@85004,COG0030@1,COG0030@2	NA|NA|NA	J	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
DNDENEON_01518	547043.BIFPSEUDO_03973	1.1e-167	595.9	Bifidobacteriales	ispE	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006629,GO:0006720,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0050515,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901576	2.1.1.182,2.7.1.148	ko:K00919,ko:K02528,ko:K16924	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096,M00582	R05634,R10716	RC00002,RC00003,RC01439,RC03257	ko00000,ko00001,ko00002,ko01000,ko02000,ko03009	3.A.1.29		iEC55989_1330.EC55989_1304,iLJ478.TM1383,iYO844.BSU00460	Bacteria	2GKXD@201174,4CZMW@85004,COG1947@1,COG1947@2	NA|NA|NA	F	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DNDENEON_01519	547043.BIFPSEUDO_03974	2.6e-109	401.4	Bifidobacteriales													Bacteria	2E1BJ@1,2IKG0@201174,32WRF@2,4D0S1@85004	NA|NA|NA	S	LytR cell envelope-related transcriptional attenuator
DNDENEON_01520	547043.BIFPSEUDO_03976	3.8e-284	983.4	Bifidobacteriales	cca		2.7.7.19,2.7.7.72	ko:K00970,ko:K00974	ko03013,ko03018,map03013,map03018		R09382,R09383,R09384,R09386	RC00078	ko00000,ko00001,ko01000,ko03016,ko03019				Bacteria	2GMT1@201174,4CYUH@85004,COG0617@1,COG0617@2	NA|NA|NA	J	Probable RNA and SrmB- binding site of polymerase A
DNDENEON_01521	547043.BIFPSEUDO_03977	6.3e-122	443.4	Bifidobacteriales	deoC		3.6.1.13,3.6.1.17,3.6.1.55,3.6.1.61	ko:K01515,ko:K01518,ko:K03574,ko:K18445	ko00230,ko00240,map00230,map00240		R00184,R00969,R01054,R01232,R02805	RC00002	ko00000,ko00001,ko01000,ko03400				Bacteria	2GWEB@201174,4CZAV@85004,COG0494@1,COG0494@2	NA|NA|NA	L	Belongs to the Nudix hydrolase family
DNDENEON_01522	547043.BIFPSEUDO_03978	0.0	1281.5	Bifidobacteriales													Bacteria	2I2GZ@201174,4D2V9@85004,COG1361@1,COG1361@2	NA|NA|NA	M	Conserved repeat domain
DNDENEON_01523	547043.BIFPSEUDO_03979	2.1e-305	1054.3	Bifidobacteriales	murJ			ko:K03980					ko00000,ko01011,ko02000	2.A.66.4			Bacteria	2GKN0@201174,4CZ8M@85004,COG0728@1,COG0728@2	NA|NA|NA	KLT	MviN-like protein
DNDENEON_01524	547043.BIFPSEUDO_03980	0.0	1136.3	Bifidobacteriales	murJ			ko:K03980					ko00000,ko01011,ko02000	2.A.66.4			Bacteria	2GKN0@201174,4CZ8M@85004,COG0728@1,COG0728@2	NA|NA|NA	KLT	MviN-like protein
DNDENEON_01525	216816.GS08_00450	1e-13	82.4	Bifidobacteriales				ko:K07133					ko00000				Bacteria	2GK1Q@201174,4CZNQ@85004,COG1373@1,COG1373@2	NA|NA|NA	S	Domain of unknown function (DUF4143)
DNDENEON_01526	547043.BIFPSEUDO_03983	1.4e-121	442.2	Bifidobacteriales	yorS		3.1.3.5	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110		R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000				Bacteria	2IAHF@201174,4D0AG@85004,COG4502@1,COG4502@2	NA|NA|NA	S	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
DNDENEON_01528	547043.BIFPSEUDO_03986	7e-14	82.0	Bifidobacteriales													Bacteria	2B4NV@1,2GYXI@201174,31XF4@2,4D1TF@85004	NA|NA|NA	S	Psort location Extracellular, score 8.82
DNDENEON_01529	547043.BIFPSEUDO_03987	3.1e-181	641.0	Bifidobacteriales	trxB	GO:0000166,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748	1.8.1.9,4.3.1.9	ko:K00384,ko:K22345	ko00030,ko00450,map00030,map00450		R01544,R02016,R03596,R09372	RC00013,RC00544,RC02518,RC02873	ko00000,ko00001,ko01000			iPC815.YPO1374	Bacteria	2GKD2@201174,4CYU9@85004,COG0492@1,COG0492@2	NA|NA|NA	C	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
DNDENEON_01530	547043.BIFPSEUDO_03988	4.4e-202	710.7	Bifidobacteriales	parB	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005694,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0060187,GO:0071944		ko:K03497					ko00000,ko03000,ko03036,ko04812				Bacteria	2GNRN@201174,4CYUE@85004,COG1475@1,COG1475@2	NA|NA|NA	K	Belongs to the ParB family
DNDENEON_01531	547043.BIFPSEUDO_03989	4.5e-172	610.5	Bifidobacteriales	parA			ko:K03496					ko00000,ko03036,ko04812				Bacteria	2GMU7@201174,4CZ2D@85004,COG1192@1,COG1192@2	NA|NA|NA	D	CobQ CobB MinD ParA nucleotide binding domain protein
DNDENEON_01532	547043.BIFPSEUDO_03990	2.3e-129	468.4	Bifidobacteriales	rsmG	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.170	ko:K03501					ko00000,ko01000,ko03009,ko03036				Bacteria	2GM9Z@201174,4CZ29@85004,COG0357@1,COG0357@2	NA|NA|NA	J	Specifically methylates the N7 position of a guanine in 16S rRNA
DNDENEON_01533	547043.BIFPSEUDO_03991	8e-91	339.7	Bifidobacteriales	jag			ko:K06346,ko:K09749					ko00000				Bacteria	2GPZK@201174,4CYQQ@85004,COG1847@1,COG1847@2	NA|NA|NA	S	Putative single-stranded nucleic acids-binding domain
DNDENEON_01534	547043.BIFPSEUDO_03992	3.9e-190	670.6	Bifidobacteriales	yidC			ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335			ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9			Bacteria	2GJBU@201174,4CYZ2@85004,COG0706@1,COG0706@2	NA|NA|NA	U	Membrane protein insertase, YidC Oxa1 family
DNDENEON_01535	1435051.BMOU_1309	5.9e-14	82.4	Bifidobacteriales	rpmH	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904		ko:K02914	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GQFY@201174,4D1EF@85004,COG0230@1,COG0230@2	NA|NA|NA	J	Belongs to the bacterial ribosomal protein bL34 family
DNDENEON_01536	547043.BIFPSEUDO_03996	2.9e-306	1057.0	Bifidobacteriales	dnaA	GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990837		ko:K02313	ko02020,ko04112,map02020,map04112				ko00000,ko00001,ko03032,ko03036				Bacteria	2GJKI@201174,4CZDW@85004,COG0593@1,COG0593@2	NA|NA|NA	L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DNDENEON_01537	547043.BIFPSEUDO_03998	1e-204	719.2	Bifidobacteriales	dnaN	GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400				Bacteria	2GJK3@201174,4CZTV@85004,COG0592@1,COG0592@2	NA|NA|NA	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
DNDENEON_01538	547043.BIFPSEUDO_03999	1.3e-235	822.0	Bifidobacteriales	recF	GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0018130,GO:0019438,GO:0031668,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576		ko:K03629,ko:K07459	ko03440,map03440				ko00000,ko00001,ko03400				Bacteria	2GJCS@201174,4CZQT@85004,COG1195@1,COG1195@2	NA|NA|NA	L	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DNDENEON_01539	547043.BIFPSEUDO_04000	6.2e-90	336.7	Bifidobacteriales													Bacteria	2GNQ4@201174,4D157@85004,COG5512@1,COG5512@2	NA|NA|NA	S	Protein of unknown function (DUF721)
DNDENEON_01540	547043.BIFPSEUDO_04002	0.0	1324.7	Bifidobacteriales	gyrB	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363	5.99.1.3	ko:K02470					ko00000,ko01000,ko03032,ko03400				Bacteria	2GKGP@201174,4CZ47@85004,COG0187@1,COG0187@2	NA|NA|NA	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DNDENEON_01541	547043.BIFPSEUDO_04003	0.0	1615.1	Bifidobacteriales	gyrA	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363	5.99.1.3	ko:K02469					ko00000,ko01000,ko03032,ko03400				Bacteria	2GJ2Q@201174,4CYRP@85004,COG0188@1,COG0188@2	NA|NA|NA	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DNDENEON_01542	547043.BIFPSEUDO_04004	3.3e-68	264.6	Bifidobacteriales		GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944											Bacteria	2GKZP@201174,4D0XB@85004,COG3266@1,COG3266@2	NA|NA|NA	S	Transmembrane domain of unknown function (DUF3566)
DNDENEON_01543	547043.BIFPSEUDO_04005	1.2e-260	905.2	Bifidobacteriales	gdhA		1.4.1.4	ko:K00262	ko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100		R00248	RC00006,RC02799	ko00000,ko00001,ko01000				Bacteria	2GKXG@201174,4CYTN@85004,COG0334@1,COG0334@2	NA|NA|NA	E	Belongs to the Glu Leu Phe Val dehydrogenases family
DNDENEON_01544	547043.BIFPSEUDO_04006	6.5e-58	230.3	Bifidobacteriales	mscL	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066		ko:K03282					ko00000,ko02000	1.A.22.1			Bacteria	2IQDN@201174,4D13A@85004,COG1970@1,COG1970@2	NA|NA|NA	M	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
DNDENEON_01548	547043.BIFPSEUDO_04010	3.1e-101	374.8	Bifidobacteriales				ko:K07043					ko00000				Bacteria	2GMP6@201174,4CZF9@85004,COG1451@1,COG1451@2	NA|NA|NA	S	Protein of unknown function DUF45
DNDENEON_01549	547043.BIFPSEUDO_04011	9e-189	666.0	Bifidobacteriales	ldh		1.1.1.27	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922		R00703,R01000,R03104	RC00031,RC00044	ko00000,ko00001,ko01000,ko04147				Bacteria	2IASS@201174,4CZRT@85004,COG0039@1,COG0039@2	NA|NA|NA	C	Belongs to the LDH MDH superfamily
DNDENEON_01550	547043.BIFPSEUDO_04012	5.6e-242	843.2	Bifidobacteriales	ytfL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03699					ko00000,ko02042				Bacteria	2GKN5@201174,4CZKA@85004,COG1253@1,COG1253@2	NA|NA|NA	P	Transporter associated domain
DNDENEON_01551	547043.BIFPSEUDO_04013	5.3e-119	433.7	Bifidobacteriales	cah	GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008270,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0040007,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0071944	4.2.1.1	ko:K01673	ko00910,map00910		R00132,R10092	RC02807	ko00000,ko00001,ko01000				Bacteria	2GT5H@201174,4D06V@85004,COG0288@1,COG0288@2	NA|NA|NA	P	Reversible hydration of carbon dioxide
DNDENEON_01552	547043.BIFPSEUDO_04015	1.1e-38	165.6	Bacteria													Bacteria	2BYGJ@1,33C7C@2	NA|NA|NA		
DNDENEON_01553	547043.BIFPSEUDO_04016	0.0	1825.1	Bifidobacteriales	ppc	GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008964,GO:0016829,GO:0016830,GO:0016831,GO:0044424,GO:0044444,GO:0044464	4.1.1.31	ko:K01595	ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200	M00168,M00170,M00171,M00172,M00173,M00346,M00374	R00345	RC02741	ko00000,ko00001,ko00002,ko01000			iJN678.ppc	Bacteria	2GKDB@201174,4CZS0@85004,COG2352@1,COG2352@2	NA|NA|NA	H	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
DNDENEON_01554	547043.BIFPSEUDO_04017	0.0	1154.4	Bifidobacteriales	yjjP												Bacteria	2HZ8C@201174,4CYR2@85004,COG2966@1,COG2966@2,COG3610@1,COG3610@2	NA|NA|NA	S	Threonine/Serine exporter, ThrE
DNDENEON_01555	547043.BIFPSEUDO_04018	9.4e-300	1035.4	Bifidobacteriales	putP	GO:0003333,GO:0003674,GO:0005215,GO:0005283,GO:0005298,GO:0005342,GO:0005343,GO:0005416,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006865,GO:0006869,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0010876,GO:0015075,GO:0015077,GO:0015081,GO:0015171,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015370,GO:0015672,GO:0015711,GO:0015718,GO:0015804,GO:0015824,GO:0015849,GO:0015908,GO:0015912,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0033036,GO:0034220,GO:0035725,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1903825,GO:1905039		ko:K03307,ko:K11928					ko00000,ko02000	2.A.21,2.A.21.2		iSbBS512_1146.SbBS512_E2302	Bacteria	2I041@201174,4CZS2@85004,COG0591@1,COG0591@2	NA|NA|NA	E	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DNDENEON_01556	547043.BIFPSEUDO_04019	5.9e-205	719.9	Bifidobacteriales	trpS	GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.2	ko:K01867	ko00970,map00970	M00359,M00360	R03664	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GJ9A@201174,4CYXM@85004,COG0180@1,COG0180@2	NA|NA|NA	J	Belongs to the class-I aminoacyl-tRNA synthetase family
DNDENEON_01557	547043.BIFPSEUDO_04020	3.2e-41	174.5	Bifidobacteriales													Bacteria	2EGRW@1,2HZNH@201174,32FNP@2,4D120@85004	NA|NA|NA	S	Protein of unknown function (DUF3073)
DNDENEON_01558	547043.BIFPSEUDO_04021	1.7e-63	248.4	Bifidobacteriales													Bacteria	2IQBF@201174,4D10H@85004,COG3255@1,COG3255@2	NA|NA|NA	I	Sterol carrier protein
DNDENEON_01559	547043.BIFPSEUDO_04022	0.0	1639.4	Bifidobacteriales	glgP	GO:0000272,GO:0003674,GO:0003824,GO:0004645,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0008144,GO:0008150,GO:0008152,GO:0008184,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0015980,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0055114,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901575	2.4.1.1	ko:K00688	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931		R02111		ko00000,ko00001,ko01000		GT35		Bacteria	2GIVZ@201174,4CZ3V@85004,COG0058@1,COG0058@2	NA|NA|NA	G	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
DNDENEON_01560	547043.BIFPSEUDO_04023	1.5e-35	154.8	Bifidobacteriales													Bacteria	2BFAJ@1,2ISGB@201174,3293I@2,4D185@85004	NA|NA|NA		
DNDENEON_01561	547043.BIFPSEUDO_04025	5.3e-147	526.9	Bifidobacteriales	gluP		3.4.21.105	ko:K19225					ko00000,ko01000,ko01002				Bacteria	2GJYG@201174,4CZJ0@85004,COG0705@1,COG0705@2	NA|NA|NA	S	Rhomboid family
DNDENEON_01562	547043.BIFPSEUDO_04027	2.1e-239	834.7	Bifidobacteriales				ko:K15257					ko00000,ko01000,ko03016				Bacteria	2HZAY@201174,4CZEU@85004,COG0742@1,COG0742@2	NA|NA|NA	L	ribosomal rna small subunit methyltransferase
DNDENEON_01563	566552.BIFCAT_00070	3.1e-57	228.0	Bifidobacteriales	crgA												Bacteria	2E4NY@1,2GQPW@201174,32ZHR@2,4D0ZH@85004	NA|NA|NA	D	Involved in cell division
DNDENEON_01564	547043.BIFPSEUDO_04030	6.8e-142	510.0	Bifidobacteriales													Bacteria	2GJ9Y@201174,4CZ1A@85004,COG3879@1,COG3879@2	NA|NA|NA	S	Bacterial protein of unknown function (DUF881)
DNDENEON_01565	547043.BIFPSEUDO_04031	1.9e-208	731.5	Bifidobacteriales	srtA		3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	2GKT6@201174,4CYZ5@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_01566	547043.BIFPSEUDO_04033	3.8e-119	434.1	Bifidobacteriales	trpG	GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016020,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494	2.6.1.85	ko:K01664,ko:K13950	ko00790,map00790		R01716	RC00010,RC01418	ko00000,ko00001,ko01000				Bacteria	2GJUX@201174,4D09E@85004,COG0512@1,COG0512@2	NA|NA|NA	EH	para-aminobenzoate synthase glutamine amidotransferase component II
DNDENEON_01567	547043.BIFPSEUDO_04035	0.0	1250.3	Bifidobacteriales	pknB		2.7.11.1	ko:K12132					ko00000,ko01000,ko01001				Bacteria	2GJ1J@201174,4CZFU@85004,COG0515@1,COG0515@2,COG2815@1,COG2815@2	NA|NA|NA	KLT	Protein tyrosine kinase
DNDENEON_01568	547043.BIFPSEUDO_04036	5.8e-177	626.7	Bifidobacteriales													Bacteria	2GMPZ@201174,4CYUK@85004,COG0515@1,COG0515@2	NA|NA|NA	T	Protein tyrosine kinase
DNDENEON_01569	547043.BIFPSEUDO_04037	5.2e-265	919.8	Bifidobacteriales	pbpA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464		ko:K05364	ko00550,map00550		R04519	RC00005,RC00049	ko00000,ko00001,ko01011				Bacteria	2GJUQ@201174,4CYTI@85004,COG0768@1,COG0768@2	NA|NA|NA	M	penicillin-binding protein
DNDENEON_01570	547043.BIFPSEUDO_04038	8.1e-261	906.0	Bifidobacteriales	rodA	GO:0002682,GO:0002684,GO:0008150,GO:0009605,GO:0009607,GO:0009987,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051301,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0075136		ko:K03588,ko:K05364,ko:K05837	ko00550,ko04112,map00550,map04112		R04519	RC00005,RC00049	ko00000,ko00001,ko01011,ko02000,ko03036	2.A.103.1			Bacteria	2GJTI@201174,4CZ67@85004,COG0772@1,COG0772@2	NA|NA|NA	D	Belongs to the SEDS family
DNDENEON_01571	547043.BIFPSEUDO_04039	8.8e-242	842.8	Bifidobacteriales	pstP	GO:0000287,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004647,GO:0004721,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0030145,GO:0030312,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043392,GO:0043412,GO:0043549,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045859,GO:0045936,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051098,GO:0051100,GO:0051101,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564	3.1.3.16	ko:K01090,ko:K20074					ko00000,ko01000,ko01009				Bacteria	2GJ3M@201174,4CZDN@85004,COG0631@1,COG0631@2	NA|NA|NA	T	Sigma factor PP2C-like phosphatases
DNDENEON_01572	547043.BIFPSEUDO_04040	5.2e-71	273.9	Bifidobacteriales	fhaB	GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0016020,GO:0040007,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044403,GO:0044419,GO:0044464,GO:0050896,GO:0051301,GO:0051704,GO:0071944											Bacteria	2GKA7@201174,4D0RN@85004,COG1716@1,COG1716@2	NA|NA|NA	T	Inner membrane component of T3SS, cytoplasmic domain
DNDENEON_01573	547043.BIFPSEUDO_04041	1.2e-131	475.7	Bifidobacteriales	fhaA	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944,GO:0097159,GO:1901363		ko:K02283					ko00000,ko02035,ko02044				Bacteria	2GNU2@201174,4CYUI@85004,COG1716@1,COG1716@2	NA|NA|NA	T	Protein of unknown function (DUF2662)
DNDENEON_01574	547043.BIFPSEUDO_04042	0.0	1573.1	Bifidobacteriales	dpp4		3.4.14.5	ko:K01278	ko04974,map04974				ko00000,ko00001,ko01000,ko01002,ko04090,ko04147				Bacteria	2GJ6A@201174,4CZAE@85004,COG1506@1,COG1506@2	NA|NA|NA	E	Dipeptidyl peptidase IV (DPP IV) N-terminal region
DNDENEON_01575	547043.BIFPSEUDO_04043	2.3e-224	784.6	Bifidobacteriales			2.7.13.3	ko:K07675,ko:K20263	ko02020,ko02024,map02020,map02024	M00473,M00818			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	2II1W@201174,4D0V3@85004,COG4585@1,COG4585@2	NA|NA|NA	T	Histidine kinase
DNDENEON_01576	547043.BIFPSEUDO_04044	9.3e-113	412.9	Bifidobacteriales													Bacteria	2IF55@201174,4D00S@85004,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
DNDENEON_01577	547043.BIFPSEUDO_04046	1.6e-194	685.3	Bifidobacteriales	pldB	GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0008150,GO:0008152,GO:0016020,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0044238,GO:0044464,GO:0052689,GO:0071704,GO:0071944	3.1.1.5	ko:K01048	ko00564,map00564				ko00000,ko00001,ko01000			iETEC_1333.ETEC_4102,iEcHS_1320.EcHS_A4049	Bacteria	2HZ9U@201174,4CZ5E@85004,COG2267@1,COG2267@2	NA|NA|NA	I	Serine aminopeptidase, S33
DNDENEON_01578	566552.BIFCAT_00087	8.8e-160	569.7	Bifidobacteriales	yicL												Bacteria	2HZCH@201174,4CZRZ@85004,COG0697@1,COG0697@2	NA|NA|NA	EG	EamA-like transporter family
DNDENEON_01583	1437608.BBIA_1582	2.4e-22	113.6	Bifidobacteriales			2.7.13.3	ko:K07675,ko:K20263	ko02020,ko02024,map02020,map02024	M00473,M00818			ko00000,ko00001,ko00002,ko01000,ko01001,ko02022				Bacteria	2IJ42@201174,4D13Z@85004,COG4585@1,COG4585@2	NA|NA|NA	T	Histidine kinase
DNDENEON_01584	356829.BITS_1706	1.2e-36	160.2	Bifidobacteriales													Bacteria	2IQKB@201174,4D1A1@85004,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
DNDENEON_01585	547043.BIFPSEUDO_04051	9.4e-269	932.2	Bifidobacteriales	tgt		2.4.2.29	ko:K00773			R03789,R10209	RC00063	ko00000,ko01000,ko03016				Bacteria	2GMWY@201174,4CZNX@85004,COG0343@1,COG0343@2	NA|NA|NA	F	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
DNDENEON_01586	547043.BIFPSEUDO_04052	1.5e-283	981.9	Bifidobacteriales	degP			ko:K08372	ko02020,map02020				ko00000,ko00001,ko01000,ko01002				Bacteria	2GJ96@201174,4CZAP@85004,COG0265@1,COG0265@2	NA|NA|NA	O	Domain present in PSD-95, Dlg, and ZO-1/2.
DNDENEON_01587	547043.BIFPSEUDO_04053	0.0	1400.6	Bifidobacteriales	cadA												Bacteria	2GIRF@201174,4CZ4F@85004,COG2217@1,COG2217@2	NA|NA|NA	P	E1-E2 ATPase
DNDENEON_01588	547043.BIFPSEUDO_04054	7.9e-188	662.9	Bifidobacteriales	ansA	GO:0003674,GO:0003824,GO:0004067,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006530,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009066,GO:0009068,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0032787,GO:0033345,GO:0034641,GO:0042802,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:0072329,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	3.5.1.1	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110		R00485	RC00010,RC02798	ko00000,ko00001,ko01000			iECO103_1326.ECO103_1961,iSF_1195.SF1456,iS_1188.S1571,iYL1228.KPN_01203	Bacteria	2HUB2@201174,4CZY6@85004,COG0252@1,COG0252@2	NA|NA|NA	EJ	Asparaginase
DNDENEON_01589	547043.BIFPSEUDO_04057	3.1e-270	937.2	Bifidobacteriales	fprA		1.18.1.2,1.19.1.1	ko:K00528			R10159		ko00000,ko01000				Bacteria	2GJ4A@201174,4CZIT@85004,COG0493@1,COG0493@2	NA|NA|NA	C	Pyridine nucleotide-disulphide oxidoreductase
DNDENEON_01590	547043.BIFPSEUDO_04058	9.4e-163	579.7	Bifidobacteriales	htpX	GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944		ko:K03799		M00743			ko00000,ko00002,ko01000,ko01002				Bacteria	2GMJF@201174,4CYVY@85004,COG0501@1,COG0501@2	NA|NA|NA	O	Belongs to the peptidase M48B family
DNDENEON_01592	78346.BRUM_0435	3e-184	651.4	Bifidobacteriales													Bacteria	2IBHI@201174,4CZ2T@85004,COG1476@1,COG1476@2	NA|NA|NA	K	Helix-turn-helix XRE-family like proteins
DNDENEON_01593	547043.BIFPSEUDO_04062	3.1e-170	604.4	Bifidobacteriales	yddG	GO:0003333,GO:0003674,GO:0005215,GO:0005302,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015179,GO:0015192,GO:0015196,GO:0015238,GO:0015318,GO:0015711,GO:0015801,GO:0015807,GO:0015823,GO:0015827,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0034220,GO:0042221,GO:0042493,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903825,GO:1905039										iBWG_1329.BWG_1294,iE2348C_1286.E2348C_1607,iECDH10B_1368.ECDH10B_1604,iECDH1ME8569_1439.ECDH1ME8569_1416,iECS88_1305.ECS88_1565,iEcDH1_1363.EcDH1_2175,iJO1366.b1473,iNRG857_1313.NRG857_07295,iSSON_1240.SSON_1651,iUMN146_1321.UM146_09675	Bacteria	2GM6M@201174,4CZPP@85004,COG0697@1,COG0697@2	NA|NA|NA	EG	EamA-like transporter family
DNDENEON_01594	547043.BIFPSEUDO_04063	0.0	1161.4	Bifidobacteriales	pip			ko:K01421					ko00000				Bacteria	2GKEM@201174,4CZ2A@85004,COG1511@1,COG1511@2	NA|NA|NA	S	YhgE Pip domain protein
DNDENEON_01595	1680.BADO_0052	0.0	1432.5	Bifidobacteriales	pip			ko:K01421					ko00000				Bacteria	2GKEM@201174,4CZ9R@85004,COG1511@1,COG1511@2	NA|NA|NA	S	YhgE Pip domain protein
DNDENEON_01596	547043.BIFPSEUDO_04065	1.6e-205	721.8	Bifidobacteriales	fbaA	GO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046914,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	4.1.2.13	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167,M00344,M00345	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000			iZ_1308.Z4263	Bacteria	2GM5P@201174,4CZJI@85004,COG0191@1,COG0191@2	NA|NA|NA	G	Fructose-bisphosphate aldolase class-II
DNDENEON_01597	1680.BADO_0054	1.6e-249	868.2	Bifidobacteriales	purA	GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.4.4	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	M00049	R01135	RC00458,RC00459	ko00000,ko00001,ko00002,ko01000				Bacteria	2GMP4@201174,4CZ0U@85004,COG0104@1,COG0104@2	NA|NA|NA	F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DNDENEON_01598	216816.GS08_00505	1.4e-295	1021.5	Bifidobacteriales	clcA	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006821,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015672,GO:0015698,GO:0015706,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0031404,GO:0034220,GO:0042802,GO:0043167,GO:0043168,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071705,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600		ko:K03281,ko:K03499					ko00000,ko02000	2.A.38.1,2.A.38.4,2.A.49		iAF1260.b0155,iB21_1397.B21_00153,iBWG_1329.BWG_0148,iE2348C_1286.E2348C_0162,iEC042_1314.EC042_0155,iEC55989_1330.EC55989_0149,iECBD_1354.ECBD_3463,iECDH10B_1368.ECDH10B_0135,iECDH1ME8569_1439.ECDH1ME8569_0149,iECD_1391.ECD_00154,iECIAI1_1343.ECIAI1_0153,iECO103_1326.ECO103_0155,iECSE_1348.ECSE_0156,iECUMN_1333.ECUMN_0152,iECW_1372.ECW_m0152,iEKO11_1354.EKO11_3761,iETEC_1333.ETEC_0151,iEcDH1_1363.EcDH1_3447,iEcE24377_1341.EcE24377A_0160,iEcolC_1368.EcolC_3504,iJO1366.b0155,iSSON_1240.SSON_0167,iUMNK88_1353.UMNK88_159,iWFL_1372.ECW_m0152,iY75_1357.Y75_RS00790,iZ_1308.Z0166	Bacteria	2GPPN@201174,4CZQR@85004,COG0038@1,COG0038@2,COG0569@1,COG0569@2	NA|NA|NA	P	Voltage gated chloride channel
DNDENEON_01599	547043.BIFPSEUDO_04069	1.6e-150	539.3	Bifidobacteriales				ko:K06199					ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3			Bacteria	2IC26@201174,4D0RK@85004,COG0239@1,COG0239@2	NA|NA|NA	U	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DNDENEON_01601	547043.BIFPSEUDO_04416	3.9e-246	857.1	Bifidobacteriales	nhaA			ko:K03313					ko00000,ko02000	2.A.33.1			Bacteria	2GKIK@201174,4CZES@85004,COG3004@1,COG3004@2	NA|NA|NA	P	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DNDENEON_01602	547043.BIFPSEUDO_04417	4.8e-117	427.2	Bifidobacteriales	safC	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944											Bacteria	2HXV7@201174,4CZZN@85004,COG4122@1,COG4122@2	NA|NA|NA	S	O-methyltransferase
DNDENEON_01603	547043.BIFPSEUDO_04418	1.5e-177	628.6	Bifidobacteriales	sdhB	GO:0000104,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0022904,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204	1.3.5.1,1.3.5.4	ko:K00240	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000			e_coli_core.b0724,iAF1260.b0724,iBWG_1329.BWG_0583,iEC042_1314.EC042_0742,iECDH10B_1368.ECDH10B_0791,iECDH1ME8569_1439.ECDH1ME8569_0683,iECUMN_1333.ECUMN_0802,iEcDH1_1363.EcDH1_2911,iJO1366.b0724,iJR904.b0724,iY75_1357.Y75_RS03765	Bacteria	2GP9C@201174,4CZWJ@85004,COG0479@1,COG0479@2	NA|NA|NA	C	4Fe-4S dicluster domain
DNDENEON_01604	547043.BIFPSEUDO_04419	0.0	1290.4	Bifidobacteriales	sdhA	GO:0000104,GO:0000166,GO:0001539,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006113,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022607,GO:0022900,GO:0030030,GO:0030031,GO:0032991,GO:0033554,GO:0036094,GO:0040011,GO:0043167,GO:0043168,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044780,GO:0044781,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045283,GO:0045284,GO:0045333,GO:0048037,GO:0048870,GO:0050660,GO:0050662,GO:0050896,GO:0051179,GO:0051674,GO:0051716,GO:0055114,GO:0070469,GO:0070470,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0071949,GO:0071973,GO:0072350,GO:0097159,GO:0097588,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204	1.3.5.1,1.3.5.4	ko:K00239	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000			iE2348C_1286.E2348C_0603,iJN746.PP_4191,iPC815.YPO1111	Bacteria	2GJ45@201174,4CYT5@85004,COG1053@1,COG1053@2	NA|NA|NA	C	Succinate dehydrogenase flavoprotein subunit
DNDENEON_01605	547043.BIFPSEUDO_04420	2.7e-255	887.5	Bifidobacteriales	dprA		5.99.1.2	ko:K03168,ko:K04096					ko00000,ko01000,ko03032,ko03400				Bacteria	2GKDA@201174,4CYVW@85004,COG0758@1,COG0758@2	NA|NA|NA	LU	DNA recombination-mediator protein A
DNDENEON_01606	547043.BIFPSEUDO_04421	1e-292	1011.9	Bifidobacteriales	comM			ko:K07391					ko00000				Bacteria	2GJIQ@201174,4CYUB@85004,COG0606@1,COG0606@2	NA|NA|NA	O	Magnesium chelatase, subunit ChlI C-terminal
DNDENEON_01607	547043.BIFPSEUDO_04422	1.5e-82	312.0	Bifidobacteriales	yraN			ko:K07460					ko00000				Bacteria	2IQ3X@201174,4D191@85004,COG0792@1,COG0792@2	NA|NA|NA	L	Belongs to the UPF0102 family
DNDENEON_01608	547043.BIFPSEUDO_04423	1.5e-166	592.0	Bifidobacteriales	pdxK		2.7.1.35	ko:K00868	ko00750,ko01100,map00750,map01100		R00174,R01909,R02493	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	2HS59@201174,4CYQC@85004,COG2240@1,COG2240@2	NA|NA|NA	H	Phosphomethylpyrimidine kinase
DNDENEON_01609	547043.BIFPSEUDO_04425	5.9e-252	876.3	Bifidobacteriales	metY		2.5.1.49	ko:K01740	ko00270,ko01100,map00270,map01100		R01287,R04859	RC00020,RC02821,RC02848	ko00000,ko00001,ko01000				Bacteria	2I2EB@201174,4CZCT@85004,COG2873@1,COG2873@2	NA|NA|NA	E	Aminotransferase class-V
DNDENEON_01610	547043.BIFPSEUDO_04426	4.3e-95	354.0	Bifidobacteriales	XK27_01265			ko:K16923,ko:K16924		M00582			ko00000,ko00002,ko02000	3.A.1.28,3.A.1.29			Bacteria	2ICFG@201174,4CZMV@85004,COG4720@1,COG4720@2	NA|NA|NA	S	ECF-type riboflavin transporter, S component
DNDENEON_01611	547043.BIFPSEUDO_04427	1.1e-305	1055.0	Bifidobacteriales			3.6.3.24	ko:K02031,ko:K02032,ko:K10824,ko:K15587,ko:K16784,ko:K16786,ko:K16787	ko02010,ko02024,map02010,map02024	M00239,M00440,M00581,M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.25.1,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35,3.A.1.5			Bacteria	2H2BQ@201174,4CZBA@85004,COG1123@1,COG4172@2	NA|NA|NA	P	AAA domain, putative AbiEii toxin, Type IV TA system
DNDENEON_01612	547043.BIFPSEUDO_04428	4.5e-149	533.9	Bifidobacteriales				ko:K16785,ko:K16786,ko:K16787	ko02010,map02010	M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	2GM93@201174,4CZXW@85004,COG0619@1,COG0619@2	NA|NA|NA	P	Cobalt transport protein
DNDENEON_01613	547043.BIFPSEUDO_04429	2.4e-192	677.9	Bifidobacteriales				ko:K03718					ko00000,ko03000				Bacteria	2GP1P@201174,4CZ0V@85004,COG1522@1,COG1522@2	NA|NA|NA	K	helix_turn_helix ASNC type
DNDENEON_01614	78345.BMERY_0924	2.8e-140	504.6	Bifidobacteriales				ko:K02003		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GJN6@201174,4CZ04@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
DNDENEON_01615	547043.BIFPSEUDO_04431	0.0	1580.8	Bifidobacteriales				ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GJTZ@201174,4CZUR@85004,COG0577@1,COG0577@2,COG4591@1,COG4591@2	NA|NA|NA	MV	MacB-like periplasmic core domain
DNDENEON_01616	547043.BIFPSEUDO_04432	6.8e-128	463.4	Bifidobacteriales													Bacteria	2GJ46@201174,4CYQW@85004,COG2197@1,COG2197@2	NA|NA|NA	K	helix_turn_helix, Lux Regulon
DNDENEON_01617	547043.BIFPSEUDO_04433	0.0	1590.1	Bifidobacteriales	tcsS2												Bacteria	2GJEG@201174,4CZ1M@85004,COG4585@1,COG4585@2	NA|NA|NA	T	Histidine kinase
DNDENEON_01618	1680.BADO_0620	4.7e-265	919.8	Bifidobacteriales	pip		3.4.11.5	ko:K01259	ko00330,map00330		R00135		ko00000,ko00001,ko01000,ko01002				Bacteria	2GK03@201174,4CZ9T@85004,COG0596@1,COG0596@2	NA|NA|NA	S	alpha/beta hydrolase fold
DNDENEON_01619	1680.BADO_0621	8.6e-129	466.5	Bifidobacteriales	proC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.5.1.2	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	M00015	R01248,R01251,R03291,R03293	RC00054,RC00083	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_0899,iIT341.HP1158	Bacteria	2GJ7D@201174,4CZIV@85004,COG0345@1,COG0345@2	NA|NA|NA	E	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DNDENEON_01620	326426.Bbr_0818	4.6e-103	380.6	Bifidobacteriales	ychF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464		ko:K06942					ko00000,ko03009				Bacteria	2GIXI@201174,4CZBU@85004,COG0012@1,COG0012@2	NA|NA|NA	J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
DNDENEON_01626	401473.BDP_0582	6.8e-24	116.3	Bifidobacteriales													Bacteria	2A8DF@1,2HAZD@201174,30XF6@2,4D2P0@85004	NA|NA|NA		
DNDENEON_01627	401473.BDP_0583	8.4e-17	92.8	Bifidobacteriales													Bacteria	2BCNY@1,2HBNP@201174,32696@2,4D2J2@85004	NA|NA|NA		
DNDENEON_01629	1435051.BMOU_1851	1.5e-15	88.2	Bifidobacteriales													Bacteria	2B8DC@1,2H5S9@201174,321NA@2,4D2AW@85004	NA|NA|NA	S	Helix-turn-helix domain
DNDENEON_01630	1435051.BMOU_1852	1.8e-98	365.5	Bifidobacteriales													Bacteria	2A22N@1,2GMZE@201174,30QCR@2,4D0IQ@85004	NA|NA|NA	L	HNH endonuclease
DNDENEON_01631	1435051.BMOU_1853	1.3e-38	165.6	Bifidobacteriales													Bacteria	2BPD5@1,2IQQY@201174,32I57@2,4D1B2@85004	NA|NA|NA		
DNDENEON_01632	1435051.BMOU_1854	3.8e-220	770.8	Bifidobacteriales													Bacteria	2IH1M@201174,4CZYC@85004,COG4626@1,COG4626@2	NA|NA|NA	S	Terminase
DNDENEON_01633	1435051.BMOU_1855	4e-161	574.3	Bifidobacteriales													Bacteria	2IE2H@201174,4CZUZ@85004,COG4695@1,COG4695@2	NA|NA|NA	S	Phage portal protein
DNDENEON_01634	1435051.BMOU_1856	1.2e-187	662.9	Bifidobacteriales				ko:K06904					ko00000				Bacteria	2HBPZ@201174,4CZX1@85004,COG3740@1,COG3740@2	NA|NA|NA	S	Caudovirus prohead serine protease
DNDENEON_01636	1435051.BMOU_1857	4.7e-41	173.7	Bifidobacteriales													Bacteria	2AYAB@1,2IRXX@201174,31QCV@2,4D1AK@85004	NA|NA|NA		
DNDENEON_01637	1435051.BMOU_1858	3.9e-36	157.5	Bifidobacteriales													Bacteria	2AYSK@1,2ISUZ@201174,31QXV@2,4D1C0@85004	NA|NA|NA		
DNDENEON_01638	401473.BDP_0592	1.3e-59	235.7	Bifidobacteriales													Bacteria	2DYBM@1,2GRRD@201174,34920@2,4D13J@85004	NA|NA|NA		
DNDENEON_01639	1435051.BMOU_1860	1.9e-54	218.4	Bifidobacteriales													Bacteria	2FJV8@1,2GTIC@201174,34BHS@2,4D11C@85004	NA|NA|NA		
DNDENEON_01640	1435051.BMOU_1861	4.5e-37	160.2	Bifidobacteriales													Bacteria	2BK4B@1,2GWZB@201174,32EHY@2,4D1P7@85004	NA|NA|NA		
DNDENEON_01641	401473.BDP_0595	9.5e-147	527.3	Bifidobacteriales													Bacteria	2H75F@201174,4CZ1P@85004,COG3941@1,COG3941@2,COG5412@1,COG5412@2	NA|NA|NA	NT	phage tail tape measure protein
DNDENEON_01642	1680.BADO_1578	2.8e-109	402.5	Bifidobacteriales													Bacteria	2ANWQ@1,2IBKB@201174,31DXB@2,4D0NF@85004	NA|NA|NA		
DNDENEON_01643	1437608.BBIA_0317	1.1e-11	77.0	Bifidobacteriales													Bacteria	29EMC@1,2HDIB@201174,301JA@2,4D2N3@85004	NA|NA|NA		
DNDENEON_01644	1680.BADO_1576	2.3e-10	71.2	Bifidobacteriales													Bacteria	297JY@1,2GTZI@201174,2ZUT1@2,4D1JI@85004	NA|NA|NA		
DNDENEON_01645	566552.BIFCAT_00299	7.1e-75	287.3	Bifidobacteriales			3.2.1.20,3.5.1.28	ko:K01187,ko:K01448	ko00052,ko00500,ko01100,ko01503,map00052,map00500,map01100,map01503	M00727	R00028,R00801,R00802,R04112,R06087,R06088	RC00028,RC00049,RC00064,RC00077,RC00141	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036		GH31		Bacteria	2HZKI@201174,4D0U3@85004,COG3023@1,COG3023@2	NA|NA|NA	V	N-acetylmuramoyl-L-alanine amidase
DNDENEON_01646	315750.BPUM_3085	1.9e-11	75.5	Bacillus	xhlB												Bacteria	1VKC1@1239,1ZJ11@1386,2DRCI@1,33B7V@2,4HRDZ@91061	NA|NA|NA	S	SPP1 phage holin
DNDENEON_01647	566552.BIFCAT_00297	6.2e-90	337.4	Bifidobacteriales													Bacteria	2IH6A@201174,4CZ62@85004,COG4974@1,COG4974@2	NA|NA|NA	L	Phage integrase family
DNDENEON_01648	547043.BIFPSEUDO_03205	0.0	3674.4	Bifidobacteriales													Bacteria	2CBRJ@1,2GKSC@201174,2Z7W0@2,4CZAS@85004	NA|NA|NA	S	LPXTG-motif cell wall anchor domain protein
DNDENEON_01649	547043.BIFPSEUDO_03205	0.0	1115.5	Bifidobacteriales													Bacteria	2CBRJ@1,2GKSC@201174,2Z7W0@2,4CZAS@85004	NA|NA|NA	S	LPXTG-motif cell wall anchor domain protein
DNDENEON_01650	547043.BIFPSEUDO_03204	9e-287	992.3	Bifidobacteriales													Bacteria	2H1EY@201174,4D00Q@85004,COG4932@1,COG4932@2	NA|NA|NA	M	LPXTG-motif cell wall anchor domain protein
DNDENEON_01651	547043.BIFPSEUDO_03203	5.4e-149	533.9	Bifidobacteriales			3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	2GNWT@201174,4CZMM@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_01652	547043.BIFPSEUDO_03202	7.6e-138	496.5	Bifidobacteriales													Bacteria	2EUBW@1,2ICS5@201174,33MU8@2,4D08R@85004	NA|NA|NA		
DNDENEON_01653	547043.BIFPSEUDO_03200	8.8e-48	196.1	Bifidobacteriales				ko:K07133					ko00000				Bacteria	2GK4E@201174,4CZX6@85004,COG1373@1,COG1373@2	NA|NA|NA	S	Psort location Cytoplasmic, score
DNDENEON_01654	547043.BIFPSEUDO_03199	1.8e-216	758.4	Bifidobacteriales	clcA_2			ko:K03281					ko00000	2.A.49			Bacteria	2GPPN@201174,4CZPX@85004,COG0038@1,COG0038@2	NA|NA|NA	P	Voltage gated chloride channel
DNDENEON_01655	547043.BIFPSEUDO_03198	1e-55	224.2	Bifidobacteriales													Bacteria	2DDMI@1,2ICIR@201174,2ZIJN@2,4D00F@85004	NA|NA|NA		
DNDENEON_01656	547043.BIFPSEUDO_03197	5.5e-235	820.1	Bifidobacteriales													Bacteria	2IAW1@201174,4CZ3D@85004,COG3290@1,COG3290@2	NA|NA|NA	T	GHKL domain
DNDENEON_01657	547043.BIFPSEUDO_03196	2.8e-131	474.6	Bifidobacteriales													Bacteria	2GKK5@201174,4CZAU@85004,COG3279@1,COG3279@2	NA|NA|NA	K	LytTr DNA-binding domain
DNDENEON_01658	547043.BIFPSEUDO_03195	1.6e-210	738.4	Bifidobacteriales	ugpC			ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606			ko00000,ko00001,ko00002,ko02000	3.A.1.1			Bacteria	2GJCM@201174,4CYU6@85004,COG3842@1,COG3842@2	NA|NA|NA	E	Belongs to the ABC transporter superfamily
DNDENEON_01659	547043.BIFPSEUDO_03194	2e-269	934.5	Bifidobacteriales													Bacteria	2I2F0@201174,4CZ2E@85004,COG0515@1,COG0515@2	NA|NA|NA	KLT	Domain of unknown function (DUF4032)
DNDENEON_01660	547043.BIFPSEUDO_03193	1.2e-175	622.5	Bifidobacteriales	rlmB	GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.185	ko:K03218,ko:K03437					ko00000,ko01000,ko03009,ko03016				Bacteria	2GJMR@201174,4CZB1@85004,COG0566@1,COG0566@2	NA|NA|NA	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DNDENEON_01661	547043.BIFPSEUDO_03192	1.7e-232	811.6	Bifidobacteriales													Bacteria	2GJU2@201174,4CZVY@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01662	547043.BIFPSEUDO_03986	4.5e-13	79.3	Bifidobacteriales													Bacteria	2B4NV@1,2GYXI@201174,31XF4@2,4D1TF@85004	NA|NA|NA	S	Psort location Extracellular, score 8.82
DNDENEON_01663	547043.BIFPSEUDO_03189	3.4e-55	220.7	Bifidobacteriales				ko:K06218					ko00000,ko02048				Bacteria	2GRMT@201174,4D1F9@85004,COG2026@1,COG2026@2	NA|NA|NA	DJ	Addiction module toxin, RelE StbE family
DNDENEON_01664	547043.BIFPSEUDO_03188	1.3e-48	198.7	Bifidobacteriales													Bacteria	2BCF9@1,2HBC0@201174,3260W@2,4D2ID@85004	NA|NA|NA	S	Antitoxin component of a toxin-antitoxin (TA) module
DNDENEON_01665	547043.BIFPSEUDO_03187	2.2e-125	455.3	Bifidobacteriales													Bacteria	2H3AT@201174,4D00R@85004,COG3247@1,COG3247@2	NA|NA|NA	S	Short repeat of unknown function (DUF308)
DNDENEON_01666	547043.BIFPSEUDO_03185	0.0	1333.2	Bifidobacteriales	lacL		3.2.1.23	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100		R01105,R01678,R03355,R04783,R06114	RC00049,RC00452	ko00000,ko00001,ko01000				Bacteria	2GMAT@201174,4CYYS@85004,COG3250@1,COG3250@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_01667	547043.BIFPSEUDO_04310	0.0	1340.5	Bifidobacteriales	lacL		3.2.1.23	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100		R01105,R01678,R03355,R04783,R06114	RC00049,RC00452	ko00000,ko00001,ko01000				Bacteria	2GMAT@201174,4CYYS@85004,COG3250@1,COG3250@2	NA|NA|NA	G	Psort location Cytoplasmic, score 8.87
DNDENEON_01668	547043.BIFPSEUDO_04311	4.1e-135	487.3	Bifidobacteriales	tenA		3.5.99.2	ko:K03707	ko00730,ko01100,map00730,map01100		R02133,R09993	RC00224,RC00652,RC02832	ko00000,ko00001,ko01000,ko03000				Bacteria	2IGA8@201174,4CZRV@85004,COG0819@1,COG0819@2	NA|NA|NA	K	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4-amino-5-aminomethyl-2-methylpyrimidine to 4-amino- 5-hydroxymethyl-2-methylpyrimidine (HMP)
DNDENEON_01670	547043.BIFPSEUDO_04313	0.0	1479.9	Bifidobacteriales	cbgA_1		3.2.1.23	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100		R01105,R01678,R03355,R04783,R06114	RC00049,RC00452	ko00000,ko00001,ko01000				Bacteria	2GMAT@201174,4CZH9@85004,COG3250@1,COG3250@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 2 family
DNDENEON_01671	547043.BIFPSEUDO_04314	0.0	1271.1	Bifidobacteriales	metG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GK4S@201174,4CZ20@85004,COG0143@1,COG0143@2	NA|NA|NA	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DNDENEON_01672	547043.BIFPSEUDO_04316	6.6e-107	393.3	Bifidobacteriales													Bacteria	2AU2N@1,2IJNI@201174,31JNZ@2,4D047@85004	NA|NA|NA		
DNDENEON_01673	547043.BIFPSEUDO_04318	6.1e-191	673.3	Bifidobacteriales	rsmI	GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.198	ko:K07056					ko00000,ko01000,ko03009				Bacteria	2GJ9Q@201174,4CZ03@85004,COG0313@1,COG0313@2	NA|NA|NA	H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DNDENEON_01674	1435051.BMOU_0563	1.6e-17	95.5	Bifidobacteriales			3.2.1.78	ko:K01218	ko00051,ko02024,map00051,map02024		R01332	RC00467	ko00000,ko00001,ko01000		GH26		Bacteria	2GJ4D@201174,4CZ39@85004,COG4124@1,COG4124@2	NA|NA|NA	G	Glycosyl hydrolase family 26
DNDENEON_01675	547043.BIFPSEUDO_04322	5.8e-126	456.8	Bifidobacteriales	dedA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944		ko:K03975					ko00000				Bacteria	2GKGR@201174,4CZ7Y@85004,COG0586@1,COG0586@2	NA|NA|NA	S	SNARE associated Golgi protein
DNDENEON_01677	547043.BIFPSEUDO_04325	8.7e-130	469.5	Bifidobacteriales													Bacteria	2GJNG@201174,4CYZV@85004,COG0637@1,COG0637@2	NA|NA|NA	S	HAD hydrolase, family IA, variant 3
DNDENEON_01678	547043.BIFPSEUDO_04326	8.6e-47	192.6	Bifidobacteriales													Bacteria	2BFF7@1,2IN83@201174,3298X@2,4D15M@85004	NA|NA|NA		
DNDENEON_01679	547043.BIFPSEUDO_04328	4.5e-115	420.6	Bifidobacteriales	hspR			ko:K13640					ko00000,ko03000				Bacteria	2IQJ4@201174,4D0Q7@85004,COG0789@1,COG0789@2	NA|NA|NA	K	transcriptional regulator, MerR family
DNDENEON_01680	547043.BIFPSEUDO_04329	3.9e-158	564.3	Bifidobacteriales	dnaJ1			ko:K03686,ko:K05516					ko00000,ko03029,ko03036,ko03110				Bacteria	2GJKK@201174,4CZ68@85004,COG0484@1,COG0484@2	NA|NA|NA	O	DnaJ molecular chaperone homology domain
DNDENEON_01681	547043.BIFPSEUDO_04330	2.8e-48	198.7	Bifidobacteriales	grpE	GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009986,GO:0009987,GO:0009991,GO:0016043,GO:0017076,GO:0019904,GO:0022607,GO:0030234,GO:0030246,GO:0030247,GO:0030312,GO:0030554,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033554,GO:0036094,GO:0040007,GO:0042594,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0050790,GO:0050896,GO:0051082,GO:0051716,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0071496,GO:0071840,GO:0071944,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065		ko:K02652,ko:K03687					ko00000,ko02035,ko02044,ko03029,ko03110	3.A.15.2			Bacteria	2GP4F@201174,4CZJ6@85004,COG0576@1,COG0576@2	NA|NA|NA	O	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DNDENEON_01682	547043.BIFPSEUDO_04331	0.0	1151.0	Bifidobacteriales	dnaK	GO:0000302,GO:0000303,GO:0000305,GO:0001968,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016020,GO:0016310,GO:0019222,GO:0019538,GO:0019899,GO:0030112,GO:0030162,GO:0030312,GO:0030313,GO:0031323,GO:0031325,GO:0031975,GO:0031982,GO:0032268,GO:0032270,GO:0033554,GO:0034599,GO:0034614,GO:0035375,GO:0036211,GO:0040007,GO:0042221,GO:0042603,GO:0043170,GO:0043226,GO:0043227,GO:0043230,GO:0043388,GO:0043412,GO:0044044,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046677,GO:0046688,GO:0046777,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051701,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070613,GO:0070887,GO:0071450,GO:0071451,GO:0071704,GO:0071944,GO:0080090,GO:0097691,GO:1901564,GO:1901700,GO:1901701,GO:1903317,GO:1903319,GO:1903561,GO:2000677,GO:2000679		ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152				ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	1.A.33.1			Bacteria	2GJTY@201174,4CZDX@85004,COG0443@1,COG0443@2	NA|NA|NA	O	Heat shock 70 kDa protein
DNDENEON_01683	547043.BIFPSEUDO_04332	1.2e-143	515.8	Bifidobacteriales													Bacteria	2IEKY@201174,4D0KV@85004,COG2013@1,COG2013@2	NA|NA|NA	S	Mitochondrial biogenesis AIM24
DNDENEON_01684	401473.BDP_2181	0.0	1076.6	Bifidobacteriales	phoA		3.1.3.1,3.1.3.39	ko:K01077,ko:K04342	ko00521,ko00730,ko00790,ko01100,ko01130,ko02020,map00521,map00730,map00790,map01100,map01130,map02020	M00126	R02135,R02228,R04620	RC00017,RC00078	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147				Bacteria	2GM8A@201174,4CYZF@85004,COG1785@1,COG1785@2	NA|NA|NA	P	Alkaline phosphatase homologues
DNDENEON_01685	547043.BIFPSEUDO_04335	4.4e-129	467.6	Bifidobacteriales				ko:K07090					ko00000				Bacteria	2I5VT@201174,4CZFS@85004,COG0730@1,COG0730@2	NA|NA|NA	S	membrane transporter protein
DNDENEON_01686	547043.BIFPSEUDO_04336	7.7e-157	559.7	Bifidobacteriales	srtC		3.4.22.70	ko:K07284					ko00000,ko01000,ko01002,ko01011				Bacteria	2GNWT@201174,4CZMM@85004,COG3764@1,COG3764@2	NA|NA|NA	M	Sortase family
DNDENEON_01687	547043.BIFPSEUDO_04337	3.9e-185	654.1	Bifidobacteriales													Bacteria	2I9Z5@201174,4D07V@85004,COG4932@1,COG4932@2	NA|NA|NA	M	Cna protein B-type domain
DNDENEON_01688	547043.BIFPSEUDO_04338	4.1e-257	893.6	Bifidobacteriales													Bacteria	2H1EY@201174,4D00Q@85004,COG4932@1,COG4932@2	NA|NA|NA	M	LPXTG-motif cell wall anchor domain protein
DNDENEON_01689	78345.BMERY_0498	0.0	1530.0	Bifidobacteriales													Bacteria	2HH2U@201174,4CZ5N@85004,COG4932@1,COG4932@2,COG5492@1,COG5492@2	NA|NA|NA	M	cell wall anchor domain protein
DNDENEON_01690	547043.BIFPSEUDO_04342	4.8e-193	680.2	Bifidobacteriales													Bacteria	2GJBJ@201174,4CZ1Y@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Psort location Cytoplasmic, score
DNDENEON_01691	547043.BIFPSEUDO_04343	7e-139	500.0	Bifidobacteriales	traX												Bacteria	2AYHW@1,2I9DQ@201174,32WBP@2,4CYRI@85004	NA|NA|NA	S	TraX protein
DNDENEON_01692	547043.BIFPSEUDO_04345	5.4e-144	516.9	Bifidobacteriales				ko:K07025					ko00000				Bacteria	2I2GN@201174,4CZF4@85004,COG1011@1,COG1011@2	NA|NA|NA	S	HAD-hyrolase-like
DNDENEON_01693	547043.BIFPSEUDO_04346	0.0	1303.9	Bifidobacteriales	pulA		3.2.1.41	ko:K01200	ko00500,ko01100,ko01110,map00500,map01100,map01110		R02111		ko00000,ko00001,ko01000		CBM48,GH13		Bacteria	2I2GM@201174,4CYSS@85004,COG1523@1,COG1523@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 13 family
DNDENEON_01694	1680.BADO_1450	1.9e-164	585.1	Bifidobacteriales	malG			ko:K15772	ko02010,map02010	M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1.16,3.A.1.1.2			Bacteria	2I2EZ@201174,4CZDE@85004,COG3833@1,COG3833@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_01695	1680.BADO_1449	4.5e-250	870.2	Bifidobacteriales	malF			ko:K02025,ko:K02026,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GJGB@201174,4CYZ8@85004,COG1175@1,COG1175@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_01696	547043.BIFPSEUDO_04349	1.6e-222	778.5	Bifidobacteriales	malE			ko:K10117,ko:K15770	ko02010,map02010	M00196,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2GJ8S@201174,4CZ8G@85004,COG2182@1,COG2182@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_01697	547043.BIFPSEUDO_04350	0.0	1142.9	Bifidobacteriales	malL		3.2.1.1,5.4.99.16	ko:K05343	ko00500,ko01100,map00500,map01100		R01557,R02108,R02112,R11262	RC01816	ko00000,ko00001,ko01000		GH13		Bacteria	2GIV1@201174,4CZ7N@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Alpha-amylase domain
DNDENEON_01698	547043.BIFPSEUDO_04352	0.0	1464.5	Bifidobacteriales	malQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	2.4.1.18,2.4.1.25,3.2.1.196,5.4.99.15	ko:K00700,ko:K00705,ko:K02438,ko:K06044	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R01824,R02110,R02111,R05196,R09995	RC00049	ko00000,ko00001,ko00002,ko01000,ko04147		CBM48,GH13,GH77	iJN678.malQ	Bacteria	2GM5Z@201174,4CZ0F@85004,COG1640@1,COG1640@2	NA|NA|NA	G	4-alpha-glucanotransferase
DNDENEON_01699	1232443.BAIA02000032_gene1958	2.9e-13	80.1	unclassified Clostridiales													Bacteria	1V578@1239,24IJT@186801,26AY8@186813,2C5R4@1,30S72@2	NA|NA|NA	S	Transposon-encoded protein TnpV
DNDENEON_01700	547043.BIFPSEUDO_04353	9.7e-109	399.4	Bifidobacteriales	pepE		3.4.13.21	ko:K05995					ko00000,ko01000,ko01002				Bacteria	2GN35@201174,4D10R@85004,COG3340@1,COG3340@2	NA|NA|NA	E	Peptidase family S51
DNDENEON_01701	547043.BIFPSEUDO_04356	3.4e-106	391.0	Bifidobacteriales													Bacteria	2IBKF@201174,4D0E0@85004,COG5578@1,COG5578@2	NA|NA|NA	S	Protein of unknown function, DUF624
DNDENEON_01702	547043.BIFPSEUDO_04357	1.7e-151	542.0	Bifidobacteriales	rafG			ko:K10119	ko02010,map02010	M00196			ko00000,ko00001,ko00002,ko02000	3.A.1.1.28			Bacteria	2GJNN@201174,4CYZ9@85004,COG0395@1,COG0395@2	NA|NA|NA	G	ABC transporter permease
DNDENEON_01703	547043.BIFPSEUDO_04358	3.7e-154	550.8	Bifidobacteriales	msmF			ko:K02025,ko:K10118,ko:K15771	ko02010,map02010	M00196,M00207,M00491			ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.16,3.A.1.1.2,3.A.1.1.28			Bacteria	2I330@201174,4CZJC@85004,COG1175@1,COG1175@2	NA|NA|NA	G	Binding-protein-dependent transport system inner membrane component
DNDENEON_01704	547043.BIFPSEUDO_04360	1.7e-182	645.2	Bifidobacteriales													Bacteria	2GJBJ@201174,4CZ1Y@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Psort location Cytoplasmic, score
DNDENEON_01705	547043.BIFPSEUDO_04361	4.1e-187	660.6	Bifidobacteriales													Bacteria	2GJBJ@201174,4D00W@85004,COG1609@1,COG1609@2	NA|NA|NA	K	Periplasmic binding protein-like domain
DNDENEON_01706	547043.BIFPSEUDO_04362	7.5e-266	922.5	Bifidobacteriales	amyE			ko:K10117	ko02010,map02010	M00196			ko00000,ko00001,ko00002,ko02000	3.A.1.1.28			Bacteria	2GWCY@201174,4CYWG@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_01707	547043.BIFPSEUDO_04363	0.0	1243.4	Bifidobacteriales			3.2.1.10,3.2.1.20,3.2.1.93	ko:K01182,ko:K01187,ko:K01226	ko00052,ko00500,ko01100,map00052,map00500,map01100		R00028,R00801,R00802,R00837,R01718,R01791,R06087,R06088,R06113,R06199	RC00028,RC00049,RC00059,RC00077,RC00451	ko00000,ko00001,ko01000		GH13,GH31		Bacteria	2GKS4@201174,4CZ1E@85004,COG0366@1,COG0366@2	NA|NA|NA	G	Alpha-amylase domain
DNDENEON_01708	547043.BIFPSEUDO_04364	1.1e-258	898.7	Bifidobacteriales	amyE			ko:K10117	ko02010,map02010	M00196			ko00000,ko00001,ko00002,ko02000	3.A.1.1.28			Bacteria	2GWCY@201174,4CYWG@85004,COG1653@1,COG1653@2	NA|NA|NA	G	Bacterial extracellular solute-binding protein
DNDENEON_01709	547043.BIFPSEUDO_04365	2.4e-135	488.0	Bifidobacteriales													Bacteria	2GNRS@201174,4CZD2@85004,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
DNDENEON_01710	547043.BIFPSEUDO_04366	1.9e-62	245.0	Bifidobacteriales													Bacteria	2B5DJ@1,2IRRR@201174,31Y80@2,4D1E6@85004	NA|NA|NA	S	Protein of unknown function (DUF4235)
DNDENEON_01711	547043.BIFPSEUDO_04368	1e-142	512.7	Bifidobacteriales	nfrA		1.5.1.38,1.5.1.39	ko:K19285,ko:K19286	ko00740,ko01100,map00740,map01100		R05705,R05706	RC00126	ko00000,ko00001,ko01000				Bacteria	2I65Z@201174,4CZ5R@85004,COG0778@1,COG0778@2	NA|NA|NA	C	Nitroreductase family
DNDENEON_01712	547043.BIFPSEUDO_04369	1.6e-44	184.9	Bifidobacteriales													Bacteria	2B78R@1,2IQGT@201174,320BB@2,4D178@85004	NA|NA|NA		
DNDENEON_01717	401473.BDP_0911	2.9e-61	242.7	Bacteria	ydhQ	GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716	2.7.11.1	ko:K12132					ko00000,ko01000,ko01001				Bacteria	COG3468@1,COG3468@2	NA|NA|NA	MU	cell adhesion
DNDENEON_01721	398513.BBNG_01175	9.4e-10	69.7	Bifidobacteriales													Bacteria	29W79@1,2IC42@201174,30HSG@2,4CZZM@85004	NA|NA|NA	S	Helix-turn-helix domain
DNDENEON_01722	401473.BDP_0914	1.6e-57	230.3	Bifidobacteriales													Bacteria	29W79@1,2IC42@201174,30HSG@2,4CZZM@85004	NA|NA|NA	S	Helix-turn-helix domain
DNDENEON_01724	547043.BIFPSEUDO_03534	4.9e-81	307.0	Bifidobacteriales	aroQ	GO:0003674,GO:0003824,GO:0003855,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0040007,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:1901576	4.2.1.10	ko:K03786	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03084	RC00848	ko00000,ko00001,ko00002,ko01000			iIT341.HP1038	Bacteria	2IMBY@201174,4D0Q6@85004,COG0757@1,COG0757@2	NA|NA|NA	E	Catalyzes a trans-dehydration via an enolate intermediate
DNDENEON_01725	547043.BIFPSEUDO_03533	0.0	1084.7	Bifidobacteriales	aroK	GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003856,GO:0004765,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016835,GO:0016838,GO:0017076,GO:0019438,GO:0019632,GO:0019752,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615	2.7.1.71,4.2.3.4	ko:K00891,ko:K01735,ko:K13829	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412,R03083	RC00002,RC00078,RC00847	ko00000,ko00001,ko00002,ko01000				Bacteria	2GIUZ@201174,4CZ2G@85004,COG0337@1,COG0337@2,COG0703@1,COG0703@2	NA|NA|NA	H	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DNDENEON_01726	547043.BIFPSEUDO_03532	1.3e-221	775.4	Bifidobacteriales	aroC	GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016491,GO:0016651,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	4.2.3.5	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R01714	RC00586	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_0976,iNJ661.Rv2540c	Bacteria	2GJJN@201174,4CZ43@85004,COG0082@1,COG0082@2	NA|NA|NA	E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DNDENEON_01727	547043.BIFPSEUDO_03531	9.3e-57	226.5	Bifidobacteriales			3.4.23.43	ko:K02654		M00331			ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2			Bacteria	2B59B@1,2GRM1@201174,31Y3G@2,4D110@85004	NA|NA|NA	S	Type IV leader peptidase family
DNDENEON_01728	547043.BIFPSEUDO_03530	8.9e-191	672.9	Bifidobacteriales	mltG			ko:K07082					ko00000				Bacteria	2GKGQ@201174,4CZID@85004,COG1559@1,COG1559@2	NA|NA|NA	S	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DNDENEON_01729	547043.BIFPSEUDO_03529	2.7e-82	311.2	Bifidobacteriales	yqgF	GO:0000966,GO:0000967,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0140097,GO:1901360		ko:K07447					ko00000,ko01000				Bacteria	2IQB0@201174,4D0WQ@85004,COG0816@1,COG0816@2	NA|NA|NA	L	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DNDENEON_01730	547043.BIFPSEUDO_03528	0.0	1751.9	Bifidobacteriales	alaS	GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GIUG@201174,4CZQN@85004,COG0013@1,COG0013@2	NA|NA|NA	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DNDENEON_01731	547043.BIFPSEUDO_03527	2.5e-36	157.5	Bifidobacteriales													Bacteria	2B9VR@1,2IQYT@201174,3238X@2,4D16I@85004	NA|NA|NA		
DNDENEON_01732	547043.BIFPSEUDO_03526	3.4e-59	234.2	Bifidobacteriales	WQ51_05790												Bacteria	2II1J@201174,4D0VH@85004,COG4768@1,COG4768@2	NA|NA|NA	S	Bacterial protein of unknown function (DUF948)
DNDENEON_01733	547043.BIFPSEUDO_03525	5.6e-129	466.8	Bifidobacteriales	pgm3												Bacteria	2GK2I@201174,4CZH2@85004,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
DNDENEON_01734	566552.BIFCAT_00976	8.5e-50	203.0	Bifidobacteriales	yvlD			ko:K08972					ko00000				Bacteria	2HZND@201174,4D117@85004,COG1950@1,COG1950@2	NA|NA|NA	S	Mycobacterial 4 TMS phage holin, superfamily IV
DNDENEON_01735	547043.BIFPSEUDO_03523	3.1e-110	404.4	Bifidobacteriales	rpsD	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112		ko:K02986	ko03010,map03010	M00178,M00179			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GIRX@201174,4CYSP@85004,COG0522@1,COG0522@2	NA|NA|NA	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DNDENEON_01736	547043.BIFPSEUDO_03522	9.2e-150	536.2	Bifidobacteriales	lolD			ko:K02003		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2IATV@201174,4CZMH@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter
DNDENEON_01737	547043.BIFPSEUDO_03521	4.8e-216	756.9	Bifidobacteriales				ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2H8C2@201174,4CZB5@85004,COG0577@1,COG0577@2	NA|NA|NA	V	FtsX-like permease family
DNDENEON_01738	547043.BIFPSEUDO_03520	1.7e-61	241.9	Bifidobacteriales													Bacteria	2CBVU@1,2IKKE@201174,3324G@2,4D106@85004	NA|NA|NA	S	Domain of unknown function (DUF4418)
DNDENEON_01739	547043.BIFPSEUDO_03519	0.0	1523.1	Bifidobacteriales	pcrA	GO:0000018,GO:0000166,GO:0000287,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009892,GO:0009987,GO:0010605,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030312,GO:0030554,GO:0031323,GO:0031324,GO:0032392,GO:0032508,GO:0032552,GO:0032554,GO:0032558,GO:0032564,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0036094,GO:0040007,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045910,GO:0045934,GO:0046483,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0060542,GO:0060543,GO:0065007,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902494	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430				ko00000,ko00001,ko01000,ko03400				Bacteria	2GISS@201174,4CYRJ@85004,COG0210@1,COG0210@2	NA|NA|NA	L	DNA helicase
DNDENEON_01740	547043.BIFPSEUDO_03518	1.5e-106	392.1	Bifidobacteriales	xpt		2.4.2.22,2.4.2.7	ko:K00759,ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110		R00190,R01229,R02142,R04378	RC00063,RC00122	ko00000,ko00001,ko01000,ko04147				Bacteria	2GJ3S@201174,4CYSZ@85004,COG0503@1,COG0503@2	NA|NA|NA	F	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
DNDENEON_01741	547043.BIFPSEUDO_03517	2.8e-244	850.9	Bifidobacteriales	pbuX			ko:K03458					ko00000	2.A.40			Bacteria	2GMH6@201174,4CZ9F@85004,COG2233@1,COG2233@2	NA|NA|NA	F	Permease family
DNDENEON_01742	547043.BIFPSEUDO_03516	0.0	1217.6	Bifidobacteriales	yrhL												Bacteria	2GKI5@201174,4D0BY@85004,COG1835@1,COG1835@2	NA|NA|NA	I	Psort location CytoplasmicMembrane, score 9.99
DNDENEON_01743	547043.BIFPSEUDO_03515	1.7e-232	811.6	Bifidobacteriales	ackA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.7.2.1,2.7.2.15	ko:K00925,ko:K19697	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	M00357,M00579	R00315,R01353	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000			iAF987.Gmet_1034,iIT341.HP0903m,iNJ661.Rv0409	Bacteria	2GJAW@201174,4CZ7V@85004,COG0282@1,COG0282@2	NA|NA|NA	H	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DNDENEON_01744	547043.BIFPSEUDO_03514	1.3e-301	1041.6	Bifidobacteriales	pta	GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0006082,GO:0006083,GO:0006950,GO:0008150,GO:0008152,GO:0008959,GO:0009058,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016053,GO:0016407,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0030145,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0046914,GO:0050182,GO:0050896,GO:0055114,GO:0071704,GO:0072330,GO:1901576	1.1.1.40,2.3.1.19,2.3.1.8,3.6.3.21	ko:K00029,ko:K00625,ko:K00634,ko:K02028,ko:K04020,ko:K13788	ko00430,ko00620,ko00640,ko00650,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00650,map00680,map00710,map00720,map01100,map01120,map01200	M00169,M00172,M00236,M00357,M00579	R00216,R00230,R00921,R01174	RC00004,RC00105,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3		iAF987.Gmet_1035,iAF987.Gmet_1637,iAF987.Gmet_2098,iE2348C_1286.E2348C_2692,iSB619.SA_RS03155,iYO844.BSU24090	Bacteria	2GJ5U@201174,4CZE6@85004,COG0280@1,COG0280@2	NA|NA|NA	C	phosphate acetyltransferase
DNDENEON_01745	547043.BIFPSEUDO_03513	0.0	1704.1	Bifidobacteriales	xfp	GO:0003674,GO:0003824,GO:0008150,GO:0009758	4.1.2.22,4.1.2.9	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120		R00761,R01621	RC00032,RC00226	ko00000,ko00001,ko01000				Bacteria	2GN27@201174,4CZT5@85004,COG3957@1,COG3957@2	NA|NA|NA	G	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
DNDENEON_01746	547043.BIFPSEUDO_03510	5.1e-303	1046.2	Bifidobacteriales	guaA	GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042278,GO:0042451,GO:0042455,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002			iJN746.PP_1032,iLJ478.TM1820,iSF_1195.SF2553,iSFxv_1172.SFxv_2808,iS_1188.S2725,iYL1228.KPN_02833	Bacteria	2GM09@201174,4CZC3@85004,COG0518@1,COG0518@2,COG0519@1,COG0519@2	NA|NA|NA	F	Catalyzes the synthesis of GMP from XMP
DNDENEON_01747	547043.BIFPSEUDO_03500	7.1e-74	283.1	Bifidobacteriales	yiaC			ko:K03826					ko00000,ko01000				Bacteria	2GUUC@201174,4D1I5@85004,COG0454@1,COG0456@2	NA|NA|NA	K	Acetyltransferase (GNAT) domain
DNDENEON_01748	547043.BIFPSEUDO_03499	2.2e-70	271.6	Bifidobacteriales	yvbK		3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000				Bacteria	2IPKP@201174,4D2TY@85004,COG0454@1,COG0456@2	NA|NA|NA	K	Acetyltransferase (GNAT) domain
DNDENEON_01749	566552.BIFCAT_00999	1.3e-249	868.6	Bifidobacteriales	aroA	GO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:0071944,GO:1901576	2.5.1.19	ko:K00800	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03460	RC00350	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJKX@201174,4CZBG@85004,COG0128@1,COG0128@2	NA|NA|NA	E	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
DNDENEON_01751	547043.BIFPSEUDO_03492	1.4e-212	745.3	Bifidobacteriales	ykiI												Bacteria	2DSXT@1,2GKR7@201174,32UTZ@2,4CZBW@85004	NA|NA|NA		
DNDENEON_01752	547043.BIFPSEUDO_03491	0.0	1455.3	Bifidobacteriales	glgX		3.2.1.68	ko:K01214	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R09995,R11261		ko00000,ko00001,ko00002,ko01000		CBM48,GH13		Bacteria	2GJ00@201174,4CZGR@85004,COG1523@1,COG1523@2	NA|NA|NA	G	Belongs to the glycosyl hydrolase 13 family
DNDENEON_01753	547043.BIFPSEUDO_03490	7.5e-123	446.4	Bifidobacteriales			3.6.1.13	ko:K01515	ko00230,map00230		R01054	RC00002	ko00000,ko00001,ko01000				Bacteria	2IIY0@201174,4D0P8@85004,COG0494@1,COG0494@2	NA|NA|NA	L	NUDIX domain
DNDENEON_01754	547043.BIFPSEUDO_03489	7.6e-174	616.3	Bifidobacteriales	yqfO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.5.4.16	ko:K22391	ko00790,ko01100,map00790,map01100	M00126	R00428,R04639,R05046,R05048	RC00263,RC00294,RC00323,RC00945,RC01188	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKHZ@201174,4CYXC@85004,COG0327@1,COG0327@2	NA|NA|NA	L	NIF3 (NGG1p interacting factor 3)
DNDENEON_01755	566552.BIFCAT_01027	0.0	1786.2	Bifidobacteriales	polA	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0030312,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440		R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400				Bacteria	2GJY2@201174,4CYVK@85004,COG0258@1,COG0258@2,COG0749@1,COG0749@2	NA|NA|NA	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DNDENEON_01756	547043.BIFPSEUDO_03487	9.4e-101	373.2	Bifidobacteriales	pdtaR	GO:0000160,GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0030312,GO:0035556,GO:0040007,GO:0043167,GO:0043168,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944		ko:K22010		M00839			ko00000,ko00002,ko02022				Bacteria	2GK7T@201174,4CYS7@85004,COG3707@1,COG3707@2	NA|NA|NA	T	Response regulator receiver domain protein
DNDENEON_01757	547043.BIFPSEUDO_03486	2.2e-162	578.2	Bifidobacteriales	yeaD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716	4.2.1.9,5.1.3.15	ko:K01687,ko:K01792	ko00010,ko00290,ko00770,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00010,map00290,map00770,map01100,map01110,map01120,map01130,map01210,map01230	M00019,M00570	R01209,R02739,R04441,R05070	RC00468,RC00563,RC01714	ko00000,ko00001,ko00002,ko01000				Bacteria	2IIUH@201174,4CZWN@85004,COG0676@1,COG0676@2	NA|NA|NA	G	Aldose 1-epimerase
DNDENEON_01758	547043.BIFPSEUDO_03485	1.3e-187	662.1	Bifidobacteriales	hbd2		1.1.1.157	ko:K00074	ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120		R01976,R05576,R06941	RC00029,RC00117	ko00000,ko00001,ko01000				Bacteria	2GJBM@201174,4CZQ2@85004,COG1250@1,COG1250@2	NA|NA|NA	I	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
DNDENEON_01760	547043.BIFPSEUDO_03481	2.5e-305	1053.9	Bifidobacteriales	pyk	GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016043,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0042802,GO:0042866,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.1.40	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	M00001,M00002,M00049,M00050	R00200,R00430,R01138,R01858,R02320	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147			e_coli_core.b1854,iAF1260.b1854,iB21_1397.B21_01813,iBWG_1329.BWG_1668,iEC042_1314.EC042_2021,iECBD_1354.ECBD_1784,iECB_1328.ECB_01825,iECDH10B_1368.ECDH10B_1995,iECDH1ME8569_1439.ECDH1ME8569_1801,iECD_1391.ECD_01825,iECO103_1326.ECO103_2044,iECO111_1330.ECO111_2362,iECO26_1355.ECO26_2692,iECUMN_1333.ECUMN_2152,iETEC_1333.ETEC_1887,iEcDH1_1363.EcDH1_1786,iEcE24377_1341.EcE24377A_2084,iEcHS_1320.EcHS_A1947,iEcSMS35_1347.EcSMS35_1332,iEcolC_1368.EcolC_1778,iG2583_1286.G2583_2306,iJO1366.b1854,iJR904.b1854,iSBO_1134.SBO_1162,iSSON_1240.SSON_1294,iSbBS512_1146.SbBS512_E2130,iUMNK88_1353.UMNK88_2326,iY75_1357.Y75_RS09740	Bacteria	2GJY8@201174,4CZA8@85004,COG0469@1,COG0469@2	NA|NA|NA	G	Pyruvate kinase
DNDENEON_01761	547043.BIFPSEUDO_03480	8.8e-176	622.9	Bifidobacteriales	terC			ko:K05794					ko00000				Bacteria	2GIWU@201174,4CYW2@85004,COG0861@1,COG0861@2	NA|NA|NA	P	Integral membrane protein, TerC family
DNDENEON_01762	547043.BIFPSEUDO_03479	0.0	1365.1	Bifidobacteriales	uvrB	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464		ko:K03702,ko:K08999	ko03420,map03420				ko00000,ko00001,ko03400				Bacteria	2GJ03@201174,4CZR0@85004,COG0556@1,COG0556@2	NA|NA|NA	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
DNDENEON_01763	547043.BIFPSEUDO_03478	2.9e-114	417.9	Bifidobacteriales	coaE	GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.24	ko:K00859	ko00770,ko01100,map00770,map01100	M00120	R00130	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000				Bacteria	2GN96@201174,4D0PG@85004,COG0237@1,COG0237@2	NA|NA|NA	H	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
DNDENEON_01764	547043.BIFPSEUDO_03477	8.3e-255	885.9	Bifidobacteriales	rpsA			ko:K02945	ko03010,map03010	M00178			br01610,ko00000,ko00001,ko00002,ko03011				Bacteria	2GJAK@201174,4CZ6S@85004,COG0539@1,COG0539@2	NA|NA|NA	J	Ribosomal protein S1
DNDENEON_01765	547043.BIFPSEUDO_03476	1.9e-161	575.1	Bifidobacteriales	folD	GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJZS@201174,4CZ53@85004,COG0190@1,COG0190@2	NA|NA|NA	F	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DNDENEON_01766	547043.BIFPSEUDO_03475	5.9e-173	613.6	Bifidobacteriales				ko:K02077		M00244			ko00000,ko00002,ko02000	3.A.1.15			Bacteria	2GM1K@201174,4CZ99@85004,COG0803@1,COG0803@2	NA|NA|NA	P	Zinc-uptake complex component A periplasmic
DNDENEON_01767	547043.BIFPSEUDO_03474	1.3e-159	568.9	Bifidobacteriales	znuC			ko:K02074,ko:K09817	ko02010,map02010	M00242,M00244			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.15,3.A.1.15.3,3.A.1.15.5			Bacteria	2GP3A@201174,4CZEV@85004,COG1121@1,COG1121@2	NA|NA|NA	P	ATPases associated with a variety of cellular activities
DNDENEON_01768	547043.BIFPSEUDO_03473	3.9e-140	504.2	Bifidobacteriales	znuB			ko:K02075,ko:K09816	ko02010,map02010	M00242,M00244			ko00000,ko00001,ko00002,ko02000	3.A.1.15,3.A.1.15.3,3.A.1.15.5			Bacteria	2GJ7H@201174,4CYTG@85004,COG1108@1,COG1108@2	NA|NA|NA	U	ABC 3 transport family
DNDENEON_01769	547043.BIFPSEUDO_03472	7.8e-88	329.7	Bifidobacteriales	ispF	GO:0003674,GO:0003824,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008685,GO:0009058,GO:0009987,GO:0016114,GO:0016829,GO:0016849,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0051483,GO:0071704,GO:1901576	2.1.1.228,2.7.7.60,4.6.1.12	ko:K00554,ko:K01770,ko:K12506	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R00597,R05633,R05637	RC00002,RC00003,RC00334,RC01440	ko00000,ko00001,ko00002,ko01000,ko03016			iNJ661.Rv3581c	Bacteria	2II8H@201174,4D0X6@85004,COG0245@1,COG0245@2	NA|NA|NA	H	Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP)
DNDENEON_01770	547043.BIFPSEUDO_03471	3e-102	377.9	Bifidobacteriales	carD	GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009405,GO:0009605,GO:0009987,GO:0009991,GO:0015968,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0040007,GO:0042594,GO:0044419,GO:0050896,GO:0051704,GO:0051716,GO:0071496		ko:K07736					ko00000,ko03000				Bacteria	2GKSU@201174,4CZXD@85004,COG1329@1,COG1329@2	NA|NA|NA	K	CarD-like/TRCF domain
DNDENEON_01771	547043.BIFPSEUDO_03470	0.0	1603.2	Bifidobacteriales	glgB	GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576	2.4.1.18	ko:K00700	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02110		ko00000,ko00001,ko00002,ko01000,ko04147		CBM48,GH13		Bacteria	2GJ5C@201174,4CZMD@85004,COG0296@1,COG0296@2	NA|NA|NA	G	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DNDENEON_01772	547043.BIFPSEUDO_03469	2e-129	468.4	Bifidobacteriales													Bacteria	2GJE6@201174,4CZS5@85004,COG0745@1,COG0745@2	NA|NA|NA	T	Response regulator receiver domain protein
DNDENEON_01773	547043.BIFPSEUDO_03468	1.5e-187	662.1	Bifidobacteriales													Bacteria	2GIX7@201174,4CZNA@85004,COG5002@1,COG5002@2	NA|NA|NA	T	ATPase histidine kinase DNA gyrase B HSP90 domain protein
DNDENEON_01774	547043.BIFPSEUDO_03467	4.5e-140	503.8	Bifidobacteriales	ctsW			ko:K02242		M00429			ko00000,ko00002,ko02044				Bacteria	2I9PA@201174,4D11A@85004,COG1040@1,COG1040@2	NA|NA|NA	S	Phosphoribosyl transferase domain
DNDENEON_01775	547043.BIFPSEUDO_03466	1.1e-152	545.8	Bifidobacteriales	cof		5.2.1.8	ko:K01802					ko00000,ko01000				Bacteria	2HZD0@201174,4CZ4N@85004,COG0561@1,COG0561@2	NA|NA|NA	T	Eukaryotic phosphomannomutase
DNDENEON_01776	1680.BADO_0706	1.5e-71	275.4	Bifidobacteriales	MA20_43655		2.7.2.8	ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R02649	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000				Bacteria	2IS6W@201174,4D0YK@85004,COG3824@1,COG3824@2	NA|NA|NA	S	Zincin-like metallopeptidase
DNDENEON_01777	547043.BIFPSEUDO_03463	6.3e-221	773.5	Bifidobacteriales													Bacteria	2DNQG@1,2I2FY@201174,32YJZ@2,4CZE9@85004	NA|NA|NA		
DNDENEON_01778	547043.BIFPSEUDO_03462	0.0	1966.4	Bifidobacteriales													Bacteria	2I2FX@201174,4CYVM@85004,COG1216@1,COG1216@2,COG5617@1,COG5617@2	NA|NA|NA	S	Glycosyl transferase, family 2
DNDENEON_01779	547043.BIFPSEUDO_03461	3.4e-54	217.2	Bifidobacteriales	whiB			ko:K18955					ko00000,ko03000				Bacteria	2CC1Y@1,2IQ4Q@201174,32RUK@2,4D12I@85004	NA|NA|NA	K	Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA
DNDENEON_01780	566552.BIFCAT_01056	1.1e-216	759.2	Bifidobacteriales													Bacteria	2GJM3@201174,4CZ5B@85004,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-related transcriptional attenuator domain
DNDENEON_01782	547043.BIFPSEUDO_03458	5.3e-170	603.6	Bifidobacteriales													Bacteria	2GJJJ@201174,4CYQY@85004,COG1316@1,COG1316@2	NA|NA|NA	K	Cell envelope-related transcriptional attenuator domain
DNDENEON_01783	547043.BIFPSEUDO_03457	0.0	1178.3	Bifidobacteriales				ko:K03466					ko00000,ko03036	3.A.12			Bacteria	2GJBR@201174,4CYU3@85004,COG1674@1,COG1674@2	NA|NA|NA	D	FtsK/SpoIIIE family
DNDENEON_01784	1437610.BREU_1071	1.9e-46	191.4	Bifidobacteriales	whiB	GO:0000302,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0010035,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015035,GO:0015036,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042221,GO:0042493,GO:0045892,GO:0045934,GO:0047134,GO:0048037,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0060255,GO:0065007,GO:0071731,GO:0080090,GO:0097159,GO:0097366,GO:1901363,GO:1901698,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141		ko:K18955					ko00000,ko03000				Bacteria	2DMIE@1,2IQCG@201174,32RSG@2,4D11W@85004	NA|NA|NA	K	Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA
DNDENEON_01785	547043.BIFPSEUDO_03455	6e-277	959.5	Bifidobacteriales	pdtaS	GO:0000155,GO:0000160,GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005524,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0017076,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564	2.7.13.3	ko:K00936		M00839			ko00000,ko00002,ko01000,ko01001,ko02022				Bacteria	2GKMP@201174,4CYV1@85004,COG3920@1,COG3920@2	NA|NA|NA	T	ATPase histidine kinase DNA gyrase B HSP90 domain protein
DNDENEON_01786	547043.BIFPSEUDO_03454	2.7e-144	518.1	Bifidobacteriales	yplQ			ko:K11068					ko00000,ko02042				Bacteria	2GJGQ@201174,4CZGT@85004,COG1272@1,COG1272@2	NA|NA|NA	S	Haemolysin-III related
DNDENEON_01787	547043.BIFPSEUDO_03453	2.6e-80	304.7	Bifidobacteriales	greA	GO:0001098,GO:0001108,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030312,GO:0031323,GO:0031326,GO:0032774,GO:0032784,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141		ko:K03624					ko00000,ko03021				Bacteria	2GNZV@201174,4D0QM@85004,COG0782@1,COG0782@2	NA|NA|NA	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
DNDENEON_01788	566552.BIFCAT_01064	1.2e-73	282.3	Bifidobacteriales	fkbP		5.2.1.8	ko:K01802					ko00000,ko01000				Bacteria	2GJK2@201174,4D0V6@85004,COG0545@1,COG0545@2	NA|NA|NA	G	Peptidyl-prolyl cis-trans
DNDENEON_01789	547043.BIFPSEUDO_03451	2.1e-282	977.6	Bifidobacteriales	sdaA		4.3.1.17	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230		R00220,R00590	RC00331,RC02600	ko00000,ko00001,ko01000				Bacteria	2GJPA@201174,4CZ6I@85004,COG1760@1,COG1760@2	NA|NA|NA	E	Serine dehydratase alpha chain
DNDENEON_01790	547043.BIFPSEUDO_03450	3.5e-92	344.4	Bifidobacteriales													Bacteria	2ASIR@1,2IHD9@201174,31HZA@2,4D0QP@85004	NA|NA|NA		
DNDENEON_01792	547043.BIFPSEUDO_03448	1.7e-182	645.2	Bifidobacteriales	ppx	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230		R03409	RC00002	ko00000,ko00001,ko01000				Bacteria	2GJBN@201174,4CZCS@85004,COG0248@1,COG0248@2	NA|NA|NA	FP	Ppx/GppA phosphatase family
DNDENEON_01793	547043.BIFPSEUDO_03447	4.8e-102	377.1	Bifidobacteriales	ppx2		3.6.1.11,3.6.1.40	ko:K01524,ko:K09009	ko00230,map00230		R03409	RC00002	ko00000,ko00001,ko01000				Bacteria	2I8CS@201174,4CZQX@85004,COG1507@1,COG1507@2	NA|NA|NA	S	Protein of unknown function (DUF501)
DNDENEON_01794	547043.BIFPSEUDO_03446	2.6e-71	275.0	Bifidobacteriales	divIC			ko:K05589,ko:K13052					ko00000,ko03036				Bacteria	2IR5G@201174,4D0SS@85004,COG2919@1,COG2919@2	NA|NA|NA	D	Septum formation initiator
DNDENEON_01795	547043.BIFPSEUDO_03445	1.5e-244	851.7	Bifidobacteriales	eno		4.2.1.11	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	M00001,M00002,M00003,M00346,M00394	R00658	RC00349	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147				Bacteria	2GJAY@201174,4CYT3@85004,COG0148@1,COG0148@2	NA|NA|NA	G	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
DNDENEON_01796	547043.BIFPSEUDO_03444	0.0	2312.3	Bifidobacteriales	mfd			ko:K03723	ko03420,map03420				ko00000,ko00001,ko01000,ko03400				Bacteria	2GJ42@201174,4CZ8X@85004,COG1197@1,COG1197@2	NA|NA|NA	L	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DNDENEON_01797	547043.BIFPSEUDO_03443	1.7e-113	415.2	Bifidobacteriales	pth	GO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101	3.1.1.29	ko:K01056					ko00000,ko01000,ko03012				Bacteria	2GKCV@201174,4CZBE@85004,COG0193@1,COG0193@2	NA|NA|NA	J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
DNDENEON_01798	547043.BIFPSEUDO_03442	3.6e-99	367.5	Bifidobacteriales			2.3.1.183	ko:K03823	ko00440,ko01130,map00440,map01130		R08871,R08938	RC00004,RC00064	ko00000,ko00001,ko01000				Bacteria	2HZCB@201174,4CZQI@85004,COG1247@1,COG1247@2	NA|NA|NA	M	Acetyltransferase (GNAT) domain
DNDENEON_01799	547043.BIFPSEUDO_03441	0.0	1965.3	Bifidobacteriales		GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944		ko:K09118					ko00000				Bacteria	2GMP3@201174,4CYW1@85004,COG1615@1,COG1615@2	NA|NA|NA	S	Uncharacterised protein family (UPF0182)
DNDENEON_01800	547043.BIFPSEUDO_03440	4e-178	630.9	Bifidobacteriales	ybbD		3.2.1.52	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000				Bacteria	2GM43@201174,4CZ6R@85004,COG1472@1,COG1472@2	NA|NA|NA	G	Glycosyl hydrolase family 3 N-terminal domain protein
DNDENEON_01801	547043.BIFPSEUDO_03439	6.2e-40	169.5	Bifidobacteriales	ybdD												Bacteria	2GQWY@201174,4D1IG@85004,COG2879@1,COG2879@2	NA|NA|NA	S	Selenoprotein, putative
DNDENEON_01802	547043.BIFPSEUDO_03438	0.0	1513.4	Bifidobacteriales	cstA	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:0071944		ko:K06200					ko00000				Bacteria	2GIYX@201174,4CZWH@85004,COG1966@1,COG1966@2	NA|NA|NA	T	5TM C-terminal transporter carbon starvation CstA
DNDENEON_01803	547043.BIFPSEUDO_03437	3.2e-53	214.2	Bifidobacteriales	azlD												Bacteria	2HZNQ@201174,4D12M@85004,COG1687@1,COG1687@2	NA|NA|NA	E	Branched-chain amino acid transport protein (AzlD)
DNDENEON_01804	547043.BIFPSEUDO_03436	8.8e-142	509.6	Bifidobacteriales	azlC												Bacteria	2HZA0@201174,4CZ7Q@85004,COG1296@1,COG1296@2	NA|NA|NA	E	AzlC protein
DNDENEON_01805	547043.BIFPSEUDO_03435	1.7e-87	329.3	Bifidobacteriales													Bacteria	2GN7I@201174,4CZ0M@85004,COG5434@1,COG5434@2	NA|NA|NA	M	Protein of unknown function (DUF3737)
DNDENEON_01806	547043.BIFPSEUDO_03434	8.4e-84	316.2	Bifidobacteriales	dtd	GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106026,GO:0106074,GO:0140098,GO:0140101,GO:1901360		ko:K07560					ko00000,ko01000,ko03016				Bacteria	2IKVR@201174,4D0VE@85004,COG1490@1,COG1490@2	NA|NA|NA	J	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
DNDENEON_01807	547043.BIFPSEUDO_03433	1.2e-310	1071.6	Bifidobacteriales													Bacteria	2GIUM@201174,4D0BX@85004,COG0477@1,COG0477@2	NA|NA|NA	EGP	Major Facilitator Superfamily
DNDENEON_01808	547043.BIFPSEUDO_03432	7.6e-146	523.1	Bifidobacteriales	pgl	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0071944,GO:0072524,GO:1901135,GO:1901360,GO:1901564	3.1.1.31,3.5.99.6	ko:K01057,ko:K02003,ko:K02564	ko00030,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00520,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008,M00258	R00765,R02035	RC00163,RC00537	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1			Bacteria	2GMQ2@201174,4CZRG@85004,COG0363@1,COG0363@2	NA|NA|NA	G	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
DNDENEON_01809	547043.BIFPSEUDO_03431	2.6e-180	637.9	Bifidobacteriales	opcA												Bacteria	2GJ1H@201174,4CZI4@85004,COG3429@1,COG3429@2	NA|NA|NA	G	Glucose-6-phosphate dehydrogenase subunit
DNDENEON_01810	566552.BIFCAT_01084	3.6e-304	1050.0	Bifidobacteriales	zwf		1.1.1.363,1.1.1.49	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	M00004,M00006,M00008	R00835,R02736,R10907	RC00001,RC00066	ko00000,ko00001,ko00002,ko01000,ko04147			iIT341.HP1101	Bacteria	2GISI@201174,4CYQM@85004,COG0364@1,COG0364@2	NA|NA|NA	G	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DNDENEON_01811	547043.BIFPSEUDO_03429	1e-217	762.3	Bifidobacteriales	patB		4.4.1.8	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230		R00782,R01286,R02408,R04941	RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303	ko00000,ko00001,ko01000,ko01007				Bacteria	2GJFQ@201174,4CZFH@85004,COG1168@1,COG1168@2	NA|NA|NA	E	Aminotransferase, class I II
DNDENEON_01812	547043.BIFPSEUDO_03427	1.2e-146	525.8	Bifidobacteriales				ko:K07124					ko00000				Bacteria	2GKJE@201174,4CZUC@85004,COG0300@1,COG0300@2	NA|NA|NA	S	Belongs to the short-chain dehydrogenases reductases (SDR) family
DNDENEON_01813	547043.BIFPSEUDO_03426	1.2e-277	961.8	Bifidobacteriales	gnd	GO:0003674,GO:0003824,GO:0004616,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006081,GO:0006082,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019362,GO:0019520,GO:0019521,GO:0019637,GO:0019682,GO:0019693,GO:0019752,GO:0032787,GO:0034641,GO:0042802,GO:0042803,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046176,GO:0046177,GO:0046395,GO:0046483,GO:0046496,GO:0046983,GO:0051156,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072329,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575	1.1.1.343,1.1.1.44	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	M00004,M00006	R01528,R10221	RC00001,RC00539	ko00000,ko00001,ko00002,ko01000			iECS88_1305.ECS88_2128,iECW_1372.ECW_m2189,iEKO11_1354.EKO11_1765,iPC815.YPO1541,iWFL_1372.ECW_m2189	Bacteria	2GJ2J@201174,4CZFG@85004,COG0362@1,COG0362@2	NA|NA|NA	H	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
DNDENEON_01814	547043.BIFPSEUDO_03425	0.0	1627.8	Bifidobacteriales	lysX												Bacteria	2GM2C@201174,4CYW5@85004,COG2898@1,COG2898@2	NA|NA|NA	S	Uncharacterised conserved protein (DUF2156)
DNDENEON_01815	566552.BIFCAT_01100	7.7e-242	842.8	Bifidobacteriales													Bacteria	2GP6Q@201174,4CYXF@85004,COG0627@1,COG0627@2	NA|NA|NA	S	Putative esterase
DNDENEON_01816	566552.BIFCAT_01102	9.2e-142	509.6	Bifidobacteriales	ybbL			ko:K01990,ko:K02003,ko:K02068,ko:K05685	ko02010,map02010	M00211,M00254,M00258,M00709			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.122.1,3.A.1.122.12			Bacteria	2I8QP@201174,4CZZG@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
DNDENEON_01817	566552.BIFCAT_01103	1.8e-134	485.3	Bifidobacteriales	ybbM			ko:K02069		M00211			ko00000,ko00002,ko02000	9.B.25.1			Bacteria	2GMHX@201174,4CYRQ@85004,COG0390@1,COG0390@2	NA|NA|NA	V	Uncharacterised protein family (UPF0014)
DNDENEON_01818	566552.BIFCAT_01104	6e-275	953.4	Bifidobacteriales	deaD		3.6.4.13	ko:K05592,ko:K11927	ko03018,map03018				ko00000,ko00001,ko01000,ko03009,ko03019				Bacteria	2GIUR@201174,4CZ4K@85004,COG0513@1,COG0513@2	NA|NA|NA	JKL	helicase superfamily c-terminal domain
DNDENEON_01819	547043.BIFPSEUDO_03417	6e-126	456.8	Bifidobacteriales													Bacteria	2GMGQ@201174,4CZA7@85004,COG4221@1,COG4221@2	NA|NA|NA	S	Enoyl-(Acyl carrier protein) reductase
DNDENEON_01820	547043.BIFPSEUDO_03415	6.4e-227	793.1	Bifidobacteriales	rutG	GO:0003674,GO:0005215,GO:0005350,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006206,GO:0006208,GO:0006212,GO:0006725,GO:0006807,GO:0006810,GO:0006855,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0015205,GO:0015210,GO:0015238,GO:0015851,GO:0015855,GO:0015857,GO:0015893,GO:0016020,GO:0016021,GO:0017144,GO:0019860,GO:0022857,GO:0031224,GO:0031226,GO:0034641,GO:0042221,GO:0042493,GO:0042737,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072527,GO:0072529,GO:0072531,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1903791,GO:1904082		ko:K02824,ko:K03458,ko:K09016					ko00000,ko02000	2.A.40,2.A.40.1.1,2.A.40.1.2,2.A.40.1.3		iECO103_1326.ECO103_1052,iECUMN_1333.ECUMN_1189	Bacteria	2GMH6@201174,4CZR8@85004,COG2233@1,COG2233@2	NA|NA|NA	F	Permease family
DNDENEON_01821	547043.BIFPSEUDO_03414	1.4e-155	555.4	Bifidobacteriales			3.1.3.73	ko:K02226,ko:K07814	ko00860,ko01100,map00860,map01100	M00122	R04594,R11173	RC00017	ko00000,ko00001,ko00002,ko01000,ko02022				Bacteria	2GN7B@201174,4CZFM@85004,COG0406@1,COG0406@2	NA|NA|NA	G	Phosphoglycerate mutase family
DNDENEON_01822	547043.BIFPSEUDO_03412	1.5e-135	488.8	Bifidobacteriales													Bacteria	2I2FW@201174,4CYW3@85004,COG2207@1,COG2207@2	NA|NA|NA	K	helix_turn_helix, arabinose operon control protein
DNDENEON_01823	547043.BIFPSEUDO_04448	3.4e-144	517.7	Bifidobacteriales				ko:K07090					ko00000				Bacteria	2GJCC@201174,4CZ65@85004,COG0730@1,COG0730@2	NA|NA|NA	S	Sulfite exporter TauE/SafE
DNDENEON_01824	566552.BIFCAT_01932	8.5e-70	270.0	Bifidobacteriales				ko:K16788					ko00000,ko02000	2.A.88.5			Bacteria	298ZI@1,2GP6V@201174,2ZW3A@2,4D056@85004	NA|NA|NA	S	ECF transporter, substrate-specific component
DNDENEON_01825	1680.BADO_0650	4.9e-79	300.8	Bifidobacteriales			2.7.1.48	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100		R00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232	RC00002,RC00017	ko00000,ko00001,ko01000				Bacteria	2HZFA@201174,4D08J@85004,COG0572@1,COG0572@2	NA|NA|NA	F	uridine kinase
DNDENEON_01826	547043.BIFPSEUDO_04445	5.9e-158	563.5	Bifidobacteriales	korD		1.2.7.3	ko:K00176,ko:K07138	ko00020,ko00720,ko01100,ko01120,ko01200,map00020,map00720,map01100,map01120,map01200	M00009,M00011,M00173,M00620	R01197	RC00004,RC02833	br01601,ko00000,ko00001,ko00002,ko01000				Bacteria	2IBJZ@201174,4CZFQ@85004,COG2768@1,COG2768@2	NA|NA|NA	C	Domain of unknown function (DUF362)
DNDENEON_01827	566552.BIFCAT_01929	6.8e-184	650.2	Bifidobacteriales				ko:K03315					ko00000,ko02000	2.A.35			Bacteria	2I8CQ@201174,4CZ4U@85004,COG1757@1,COG1757@2	NA|NA|NA	C	Na H antiporter family protein
DNDENEON_01828	1680.BADO_0648	1.1e-165	589.3	Bifidobacteriales	MA20_14895												Bacteria	2GS6E@201174,4CZWB@85004,COG2855@1,COG2855@2	NA|NA|NA	S	Conserved hypothetical protein 698
DNDENEON_01829	566552.BIFCAT_01926	1e-94	353.2	Bifidobacteriales													Bacteria	2AUIM@1,2IKCM@201174,31K74@2,4D0UW@85004	NA|NA|NA		
DNDENEON_01830	1680.BADO_0645	4.8e-86	323.9	Bifidobacteriales	feoB			ko:K04759					ko00000,ko02000	9.A.8.1			Bacteria	2GTV2@201174,4CZRU@85004,COG0370@1,COG0370@2	NA|NA|NA	P	transporter of a GTP-driven Fe(2 ) uptake system
DNDENEON_01831	518635.BIFANG_03045	2.8e-76	291.2	Bifidobacteriales	cysB		4.2.1.22	ko:K01697,ko:K18926	ko00260,ko00270,ko01100,ko01130,ko01230,map00260,map00270,map01100,map01130,map01230	M00035,M00338,M00715	R00891,R01290,R04942	RC00056,RC00069,RC00256,RC00489,RC01246	ko00000,ko00001,ko00002,ko01000,ko02000	2.A.1.3.30			Bacteria	2GIZX@201174,4CZWX@85004,COG0477@1,COG0517@1,COG0517@2,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01832	547043.BIFPSEUDO_04262	1.7e-107	395.2	Bifidobacteriales	ahpC		1.11.1.15	ko:K03386	ko04214,map04214				ko00000,ko00001,ko01000,ko04147				Bacteria	2GM74@201174,4CZXS@85004,COG0450@1,COG0450@2	NA|NA|NA	O	C-terminal domain of 1-Cys peroxiredoxin
DNDENEON_01833	547043.BIFPSEUDO_04261	0.0	1087.4	Bifidobacteriales	trxB1		1.8.1.9	ko:K00384	ko00450,map00450		R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000				Bacteria	2GKD2@201174,4CZ6G@85004,COG0492@1,COG0492@2,COG3634@1,COG3634@2	NA|NA|NA	C	Thioredoxin domain
DNDENEON_01834	78345.BMERY_1702	1.5e-228	798.5	Bifidobacteriales	yhjX			ko:K08177					ko00000,ko02000	2.A.1.11			Bacteria	2I2ID@201174,4CZX9@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01835	78345.BMERY_1701	3.3e-43	180.6	Bifidobacteriales			3.6.4.12	ko:K03655	ko03440,map03440				ko00000,ko00001,ko01000,ko03400				Bacteria	2I3IG@201174,4CZRW@85004,COG2865@1,COG2865@2	NA|NA|NA	K	Putative ATP-dependent DNA helicase recG C-terminal
DNDENEON_01836	566552.BIFCAT_01411	4.3e-35	154.5	Bifidobacteriales	lacS			ko:K03292,ko:K11104,ko:K16209					ko00000,ko02000	2.A.2,2.A.2.1,2.A.2.2			Bacteria	2HD4Y@201174,4CZRA@85004,COG2211@1,COG2211@2	NA|NA|NA	G	Psort location CytoplasmicMembrane, score 10.00
DNDENEON_01837	547043.BIFPSEUDO_03215	8.3e-241	839.3	Bifidobacteriales	vex3			ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2I99G@201174,4D0H6@85004,COG0577@1,COG0577@2	NA|NA|NA	V	ABC transporter permease
DNDENEON_01838	547043.BIFPSEUDO_03213	5e-213	746.9	Bifidobacteriales	vex1			ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2IA7B@201174,4CZJM@85004,COG0577@1,COG0577@2	NA|NA|NA	V	Efflux ABC transporter, permease protein
DNDENEON_01839	1680.BADO_0941	3.4e-112	411.0	Bifidobacteriales	vex2			ko:K02003,ko:K02004		M00258			ko00000,ko00002,ko02000	3.A.1			Bacteria	2I7UV@201174,4CZ1C@85004,COG1136@1,COG1136@2	NA|NA|NA	V	ABC transporter, ATP-binding protein
DNDENEON_01840	547043.BIFPSEUDO_03210	6.9e-80	303.1	Bifidobacteriales	ypeA		2.3.1.1	ko:K03826,ko:K22477	ko00220,ko01210,ko01230,map00220,map01210,map01230	M00028	R00259	RC00004,RC00064	ko00000,ko00001,ko00002,ko01000				Bacteria	2IHRD@201174,4D10V@85004,COG0454@1,COG0456@2	NA|NA|NA	K	Psort location Cytoplasmic, score 8.87
DNDENEON_01841	547043.BIFPSEUDO_03209	4.9e-120	437.2	Bifidobacteriales	ybjG	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0042221,GO:0044464,GO:0046677,GO:0050380,GO:0050896,GO:0071944	3.6.1.27	ko:K06153,ko:K19302	ko00550,map00550		R05627	RC00002	ko00000,ko00001,ko01000,ko01011			iEC042_1314.EC042_0932	Bacteria	2GNTK@201174,4D0FE@85004,COG0671@1,COG0671@2	NA|NA|NA	I	Psort location CytoplasmicMembrane, score
DNDENEON_01842	547043.BIFPSEUDO_03208	0.0	1587.4	Bifidobacteriales			3.2.1.21	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110		R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000		GH3		Bacteria	2GJ5H@201174,4CZ2P@85004,COG1472@1,COG1472@2	NA|NA|NA	G	Glycosyl hydrolase family 3 N-terminal domain protein
DNDENEON_01843	566552.BIFCAT_01419	3.9e-72	277.7	Bifidobacteriales													Bacteria	2A9VD@1,2I88K@201174,30Z38@2,4D0A0@85004	NA|NA|NA	S	GtrA-like protein
DNDENEON_01844	401473.BDP_1918	1.2e-205	722.6	Bifidobacteriales													Bacteria	2GKQH@201174,4D2YK@85004,COG0477@1,COG0477@2	NA|NA|NA	EGP	Sugar (and other) transporter
DNDENEON_01845	356829.BITS_0564	1e-97	364.0	Bifidobacteriales													Bacteria	2H8UD@201174,4CZ16@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01846	401473.BDP_1919	1.4e-131	476.1	Bifidobacteriales				ko:K02529,ko:K05499					ko00000,ko03000				Bacteria	2GJHF@201174,4CZCC@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_01847	401473.BDP_1920	1.3e-149	535.8	Bifidobacteriales	rihB	GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006152,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008477,GO:0009056,GO:0009116,GO:0009119,GO:0009164,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019439,GO:0034641,GO:0034655,GO:0034656,GO:0042278,GO:0042454,GO:0042802,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045437,GO:0046131,GO:0046133,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0050263,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658	3.2.2.1,3.2.2.8	ko:K01239,ko:K01250,ko:K10213	ko00230,ko00240,ko00760,ko01100,map00230,map00240,map00760,map01100		R01245,R01273,R01677,R01770,R02137,R02143	RC00033,RC00063,RC00122,RC00318,RC00485	ko00000,ko00001,ko01000			iECH74115_1262.ECH74115_3298,iECSP_1301.ECSP_3040,iECs_1301.ECs3054,iSFV_1184.SFV_2237,iSF_1195.SF2247,iSFxv_1172.SFxv_2480,iS_1188.S2376,iZ_1308.Z3419	Bacteria	2GP6N@201174,4CZIN@85004,COG1957@1,COG1957@2	NA|NA|NA	F	Inosine-uridine preferring nucleoside hydrolase
DNDENEON_01849	547043.BIFPSEUDO_04248	2.4e-297	1027.3	Bifidobacteriales	araA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008733,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0019566,GO:0019568,GO:0019569,GO:0019572,GO:0019637,GO:0044237,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046373,GO:0051167,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576	5.3.1.4	ko:K01804	ko00040,ko01100,map00040,map01100		R01761	RC00516	ko00000,ko00001,ko01000			iAPECO1_1312.APECO1_1922,iB21_1397.B21_00063,iBWG_1329.BWG_0058,iE2348C_1286.E2348C_0063,iECBD_1354.ECBD_3555,iECD_1391.ECD_00064,iECED1_1282.ECED1_0061,iECIAI1_1343.ECIAI1_0062,iECNA114_1301.ECNA114_0050,iECO103_1326.ECO103_0063,iECO26_1355.ECO26_0064,iECOK1_1307.ECOK1_0061,iECP_1309.ECP_0063,iECS88_1305.ECS88_0065,iECSE_1348.ECSE_0062,iECW_1372.ECW_m0060,iEKO11_1354.EKO11_3852,iEcE24377_1341.EcE24377A_0064,iEcHS_1320.EcHS_A0066,iEcSMS35_1347.EcSMS35_0064,iEcolC_1368.EcolC_3595,iLF82_1304.LF82_0105,iLJ478.TM0276,iNRG857_1313.NRG857_00320,iSBO_1134.SBO_0049,iSSON_1240.SSON_0068,iUMN146_1321.UM146_23095,iUTI89_1310.UTI89_C0067,iWFL_1372.ECW_m0060	Bacteria	2GJNB@201174,4CZH6@85004,COG2160@1,COG2160@2	NA|NA|NA	G	Catalyzes the conversion of L-arabinose to L-ribulose
DNDENEON_01850	547043.BIFPSEUDO_04247	6.3e-128	463.4	Bifidobacteriales	araD		4.1.2.17,5.1.3.4	ko:K01628,ko:K03077	ko00040,ko00051,ko00053,ko01100,ko01120,map00040,map00051,map00053,map01100,map01120	M00550	R02262,R05850	RC00603,RC00604,RC01479	ko00000,ko00001,ko00002,ko01000				Bacteria	2GNI6@201174,4CZXX@85004,COG0235@1,COG0235@2	NA|NA|NA	G	Class II Aldolase and Adducin N-terminal domain
DNDENEON_01851	547043.BIFPSEUDO_04246	0.0	1098.6	Bifidobacteriales	araB		2.7.1.16,2.7.1.17	ko:K00853,ko:K00854	ko00040,ko01100,map00040,map01100	M00014	R01526,R01639,R02439	RC00002,RC00538	ko00000,ko00001,ko00002,ko01000				Bacteria	2GVSJ@201174,4CZK7@85004,COG1070@1,COG1070@2	NA|NA|NA	G	FGGY family of carbohydrate kinases, C-terminal domain
DNDENEON_01852	547043.BIFPSEUDO_04244	2.1e-210	738.0	Bifidobacteriales				ko:K02529					ko00000,ko03000				Bacteria	2GK1X@201174,4CYR6@85004,COG1609@1,COG1609@2	NA|NA|NA	K	helix_turn _helix lactose operon repressor
DNDENEON_01853	547043.BIFPSEUDO_04243	9.1e-286	988.8	Bifidobacteriales	maf	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0030145,GO:0036218,GO:0036221,GO:0042802,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0047429	1.1.1.25,2.1.1.190,3.6.1.55,3.6.1.67	ko:K00014,ko:K03215,ko:K03574,ko:K06287,ko:K08310	ko00400,ko00790,ko01100,ko01110,ko01130,ko01230,map00400,map00790,map01100,map01110,map01130,map01230	M00022,M00126	R02413,R04638	RC00002,RC00206	ko00000,ko00001,ko00002,ko01000,ko03009,ko03400				Bacteria	2GNI0@201174,4CZXF@85004,COG0424@1,COG0424@2,COG1051@1,COG1051@2	NA|NA|NA	DF	Maf-like protein
DNDENEON_01854	547043.BIFPSEUDO_04242	1.4e-189	668.7	Bifidobacteriales	thrB	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004413,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009088,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019202,GO:0019752,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.1.39	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	M00018	R01771	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000			iECSE_1348.ECSE_0003,iJN678.thrB,iLJ478.TM0545,iSB619.SA_RS06620	Bacteria	2GKIW@201174,4CZN0@85004,COG0083@1,COG0083@2	NA|NA|NA	E	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
DNDENEON_01855	547043.BIFPSEUDO_04241	1.6e-241	841.6	Bifidobacteriales	hom	GO:0003674,GO:0003824,GO:0004412,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016020,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0030312,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.3	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	M00017,M00018	R01773,R01775	RC00087	ko00000,ko00001,ko00002,ko01000			iNJ661.Rv1294,iSB619.SA_RS06610	Bacteria	2GIX9@201174,4CZVD@85004,COG0460@1,COG0460@2	NA|NA|NA	E	Homoserine dehydrogenase
DNDENEON_01856	547043.BIFPSEUDO_04240	7.7e-299	1032.3	Bifidobacteriales	lysA		4.1.1.20	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R00451	RC00299	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKAI@201174,4CYRG@85004,COG0019@1,COG0019@2	NA|NA|NA	E	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
DNDENEON_01857	547043.BIFPSEUDO_04239	0.0	1179.9	Bifidobacteriales	argS	GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.19	ko:K01887	ko00970,map00970	M00359,M00360	R03646	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029			iAF987.Gmet_1434	Bacteria	2GKQ3@201174,4CZ9J@85004,COG0018@1,COG0018@2	NA|NA|NA	J	Arginyl-tRNA synthetase
DNDENEON_01858	547043.BIFPSEUDO_04238	2.8e-271	940.6	Bifidobacteriales	mmuP	GO:0000096,GO:0000097,GO:0000100,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006810,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0015806,GO:0016020,GO:0016053,GO:0019752,GO:0022857,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072337,GO:0072348,GO:0072349,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901682		ko:K02205,ko:K03293,ko:K16235,ko:K16236					ko00000,ko02000	2.A.3.1,2.A.3.1.10			Bacteria	2I2DX@201174,4D2V7@85004,COG0833@1,COG0833@2	NA|NA|NA	E	amino acid
DNDENEON_01859	566552.BIFCAT_00192	8e-64	249.6	Bifidobacteriales	psp1		3.5.99.10	ko:K09022			R11098,R11099	RC03275,RC03354	ko00000,ko01000				Bacteria	2IFCR@201174,4D0QD@85004,COG0251@1,COG0251@2	NA|NA|NA	J	Endoribonuclease L-PSP
DNDENEON_01861	547043.BIFPSEUDO_04234	4.7e-122	443.7	Bifidobacteriales	cyaA	GO:0003674,GO:0003824,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0050355	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000				Bacteria	2GWD8@201174,4CZKD@85004,COG2954@1,COG2954@2	NA|NA|NA	S	CYTH
DNDENEON_01862	547043.BIFPSEUDO_04233	1.4e-170	605.5	Bifidobacteriales	trxA2	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944		ko:K03671,ko:K05838	ko04621,ko05418,map04621,map05418				ko00000,ko00001,ko03110				Bacteria	2GJ7B@201174,4CZHU@85004,COG3118@1,COG3118@2	NA|NA|NA	O	Tetratricopeptide repeat
DNDENEON_01863	547043.BIFPSEUDO_04232	6.6e-179	633.3	Bifidobacteriales													Bacteria	28PR0@1,2GNNZ@201174,2ZCCY@2,4CYX7@85004	NA|NA|NA		
DNDENEON_01864	547043.BIFPSEUDO_04231	1.4e-194	685.6	Bifidobacteriales													Bacteria	2DMQ0@1,2IA0N@201174,32SYI@2,4CYQ0@85004	NA|NA|NA		
DNDENEON_01865	547043.BIFPSEUDO_04230	6.8e-149	533.5	Bifidobacteriales	fkbB		5.2.1.8	ko:K01802					ko00000,ko01000				Bacteria	2GJK2@201174,4CZEF@85004,COG0545@1,COG0545@2	NA|NA|NA	M	FKBP-type peptidyl-prolyl cis-trans isomerase
DNDENEON_01866	78346.BRUM_1412	2.3e-122	444.9	Bifidobacteriales	nucS			ko:K07503					ko00000,ko01000				Bacteria	2GIYB@201174,4CYXA@85004,COG1637@1,COG1637@2	NA|NA|NA	L	Cleaves both 3' and 5' ssDNA extremities of branched DNA structures
DNDENEON_01867	547043.BIFPSEUDO_04227	2.3e-44	184.5	Bifidobacteriales	atpC	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600		ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1			Bacteria	2HZPJ@201174,4D16F@85004,COG0355@1,COG0355@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane
DNDENEON_01868	547043.BIFPSEUDO_04226	5.6e-283	979.5	Bifidobacteriales	atpD	GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944	3.6.3.14	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1			Bacteria	2GIY6@201174,4CZGY@85004,COG0055@1,COG0055@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DNDENEON_01869	547043.BIFPSEUDO_04225	1.6e-163	582.0	Bifidobacteriales	atpG	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600		ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1		iLJ478.TM1611,iSSON_1240.SSON_3886,iYL1228.KPN_04138	Bacteria	2GJ7Q@201174,4CYVJ@85004,COG0224@1,COG0224@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DNDENEON_01870	547043.BIFPSEUDO_04224	3.8e-309	1066.6	Bifidobacteriales	atpA	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600	3.6.3.14	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1		iIT341.HP1134,iSB619.SA_RS10975,iSbBS512_1146.SbBS512_E4187	Bacteria	2GJRJ@201174,4CZI7@85004,COG0056@1,COG0056@2	NA|NA|NA	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DNDENEON_01871	547043.BIFPSEUDO_04223	4.5e-149	533.9	Bifidobacteriales	atpH			ko:K02109,ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1			Bacteria	2GMJ5@201174,4CZ9V@85004,COG0712@1,COG0712@2	NA|NA|NA	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DNDENEON_01872	547043.BIFPSEUDO_04222	4.4e-57	227.6	Bifidobacteriales	atpF			ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1			Bacteria	2GJS4@201174,4CYY5@85004,COG0711@1,COG0711@2	NA|NA|NA	C	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DNDENEON_01873	1435051.BMOU_0411	8.9e-31	139.0	Bifidobacteriales	atpE	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600		ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194	3.A.2.1			Bacteria	2GQI6@201174,4D16J@85004,COG0636@1,COG0636@2	NA|NA|NA	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DNDENEON_01874	547043.BIFPSEUDO_04220	2e-146	525.0	Bifidobacteriales	atpB			ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157			ko00000,ko00001,ko00002,ko00194,ko03110	3.A.2.1			Bacteria	2H3PR@201174,4CYZD@85004,COG0356@1,COG0356@2	NA|NA|NA	C	it plays a direct role in the translocation of protons across the membrane
DNDENEON_01875	547043.BIFPSEUDO_04219	5.4e-208	729.9	Bifidobacteriales	metAA	GO:0003674,GO:0003824,GO:0008374,GO:0008899,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016750	2.3.1.46	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	M00017	R01777	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000			iLJ478.TM0881	Bacteria	2GK5E@201174,4CZRK@85004,COG1897@1,COG1897@2	NA|NA|NA	E	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DNDENEON_01877	702459.BBPR_0057	2.1e-52	211.5	Bifidobacteriales													Bacteria	2IBDV@201174,4D0D7@85004,COG4584@1,COG4584@2	NA|NA|NA	L	PFAM Integrase catalytic
DNDENEON_01878	78345.BMERY_1180	4.6e-49	200.3	Bifidobacteriales													Bacteria	2H714@201174,4CZRM@85004,COG1484@1,COG1484@2	NA|NA|NA	L	IstB-like ATP binding protein
DNDENEON_01879	566552.BIFCAT_00588	1e-56	226.1	Bifidobacteriales	XK26_04895												Bacteria	28P3D@1,2GP4T@201174,2ZBZ3@2,4D0S7@85004	NA|NA|NA		
DNDENEON_01880	702459.BBPR_0854	8.3e-28	130.2	Bifidobacteriales	XK26_04895												Bacteria	28P3D@1,2GP4T@201174,2ZBZ3@2,4D0S7@85004	NA|NA|NA		
DNDENEON_01881	566552.BIFCAT_00589	0.0	1959.5	Bifidobacteriales													Bacteria	2HJPR@201174,4CZD6@85004,COG1061@1,COG1061@2	NA|NA|NA	KL	Type III restriction enzyme res subunit
DNDENEON_01882	907348.TresaDRAFT_2302	1.3e-116	426.4	Spirochaetes			2.1.1.72,3.1.21.4	ko:K00571,ko:K01155,ko:K03427					ko00000,ko01000,ko02048				Bacteria	2J9YQ@203691,COG0286@1,COG0286@2	NA|NA|NA	L	site-specific DNA-methyltransferase (adenine-specific) activity
DNDENEON_01883	566552.BIFCAT_00591	5.4e-133	480.7	Bifidobacteriales			3.1.21.4	ko:K01155					ko00000,ko01000,ko02048				Bacteria	2IHER@201174,4D0PM@85004,COG1002@1,COG1002@2	NA|NA|NA	V	Type III restriction enzyme res subunit
DNDENEON_01884	563038.HMPREF0851_01592	1.5e-56	226.9	Bacilli													Bacteria	1VCWV@1239,2C171@1,2Z7ZR@2,4HNFG@91061	NA|NA|NA	S	SIR2-like domain
DNDENEON_01885	78345.BMERY_1183	1.2e-136	493.0	Bifidobacteriales				ko:K06915					ko00000				Bacteria	2INIE@201174,4D1JH@85004,COG0433@1,COG0433@2	NA|NA|NA	S	AAA-like domain
DNDENEON_01886	78345.BMERY_1183	2e-109	402.1	Bifidobacteriales				ko:K06915					ko00000				Bacteria	2INIE@201174,4D1JH@85004,COG0433@1,COG0433@2	NA|NA|NA	S	AAA-like domain
DNDENEON_01887	78346.BRUM_0136	0.0	1548.9	Bifidobacteriales													Bacteria	2I99F@201174,4CZ4G@85004,COG1479@1,COG1479@2	NA|NA|NA	S	Protein of unknown function DUF262
DNDENEON_01889	566552.BIFCAT_00597	4.6e-111	407.1	Bifidobacteriales			3.2.1.8	ko:K01181,ko:K06889					ko00000,ko01000				Bacteria	2HZF3@201174,4D06X@85004,COG1073@1,COG1073@2	NA|NA|NA	S	alpha beta
DNDENEON_01890	566552.BIFCAT_00598	1.3e-84	318.9	Bifidobacteriales	dtd	GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106026,GO:0106074,GO:0140098,GO:0140101,GO:1901360		ko:K07560					ko00000,ko01000,ko03016				Bacteria	2IKVR@201174,4D0VE@85004,COG1490@1,COG1490@2	NA|NA|NA	J	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
DNDENEON_01891	547043.BIFPSEUDO_03866	2.2e-190	671.4	Bifidobacteriales	ghrA												Bacteria	2GP09@201174,4CZUN@85004,COG0111@1,COG0111@2	NA|NA|NA	EH	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
DNDENEON_01892	547043.BIFPSEUDO_03865	1.3e-113	416.0	Bifidobacteriales	kcsA			ko:K10716					ko00000,ko02000	1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6			Bacteria	2GKNF@201174,4CZUV@85004,COG1226@1,COG1226@2	NA|NA|NA	U	Ion channel
DNDENEON_01893	566552.BIFCAT_00603	0.0	2341.2	Bifidobacteriales	snf		2.7.11.1	ko:K08282					ko00000,ko01000				Bacteria	2GISC@201174,4CZSD@85004,COG0553@1,COG0553@2,COG4715@1,COG4715@2	NA|NA|NA	KL	Psort location Cytoplasmic, score 8.87
DNDENEON_01894	547043.BIFPSEUDO_03861	3.9e-108	397.5	Bifidobacteriales	ribU	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015238,GO:0015711,GO:0015893,GO:0016020,GO:0022857,GO:0032217,GO:0032218,GO:0034220,GO:0035461,GO:0042221,GO:0042493,GO:0044464,GO:0050896,GO:0051179,GO:0051180,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0090482,GO:0098656											Bacteria	2IAX0@201174,4CZQD@85004,COG3601@1,COG3601@2	NA|NA|NA	U	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
DNDENEON_01895	547043.BIFPSEUDO_03860	0.0	1443.3	Bifidobacteriales	ecfA			ko:K16785,ko:K16786,ko:K16787	ko02010,map02010	M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	2I2G4@201174,4CZJE@85004,COG0619@1,COG0619@2,COG1129@1,COG1129@2	NA|NA|NA	GP	ABC transporter, ATP-binding protein
DNDENEON_01896	547043.BIFPSEUDO_03859	2.4e-47	194.5	Bifidobacteriales	yhbY	GO:0000027,GO:0000028,GO:0000966,GO:0000967,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043021,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1990275		ko:K07574					ko00000,ko03009				Bacteria	2IKSS@201174,4D10K@85004,COG1534@1,COG1534@2	NA|NA|NA	J	CRS1_YhbY
DNDENEON_01897	547043.BIFPSEUDO_03858	1.8e-144	518.5	Bifidobacteriales	tenA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	3.5.99.2	ko:K03707	ko00730,ko01100,map00730,map01100		R02133,R09993	RC00224,RC00652,RC02832	ko00000,ko00001,ko01000,ko03000				Bacteria	2IA0S@201174,4CZUI@85004,COG0819@1,COG0819@2	NA|NA|NA	K	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DNDENEON_01898	547043.BIFPSEUDO_03856	6.3e-201	706.4	Bifidobacteriales													Bacteria	2GMQQ@201174,4CZRJ@85004,COG1216@1,COG1216@2	NA|NA|NA	S	Glycosyltransferase, group 2 family protein
DNDENEON_01899	547043.BIFPSEUDO_03854	1.6e-140	505.4	Bifidobacteriales	ppgK		2.7.1.2,2.7.1.63	ko:K00845,ko:K00886	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	M00001,M00549	R00299,R01600,R01786,R02187,R02189	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJA0@201174,4CYR1@85004,COG1940@1,COG1940@2	NA|NA|NA	GK	ROK family
DNDENEON_01900	547043.BIFPSEUDO_03853	8.1e-221	772.7	Bifidobacteriales													Bacteria	2GNMB@201174,4CZ48@85004,COG0436@1,COG0436@2	NA|NA|NA	E	Aminotransferase class I and II
DNDENEON_01901	547043.BIFPSEUDO_03852	5e-145	520.4	Bifidobacteriales	bioM			ko:K16784,ko:K16786	ko02010,map02010	M00581,M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.25.1,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	2I9PF@201174,4D04S@85004,COG1122@1,COG1122@2	NA|NA|NA	P	ATPases associated with a variety of cellular activities
DNDENEON_01902	547043.BIFPSEUDO_03851	4.3e-308	1063.1	Bifidobacteriales			2.8.2.22	ko:K01023					ko00000,ko01000				Bacteria	2A5FI@1,2I8X3@201174,30U5H@2,4D09F@85004	NA|NA|NA	S	Arylsulfotransferase Ig-like domain
DNDENEON_01903	547043.BIFPSEUDO_03850	0.0	1360.9	Bifidobacteriales													Bacteria	2GNXR@201174,4CZXK@85004,COG1807@1,COG1807@2	NA|NA|NA	M	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
DNDENEON_01904	566552.BIFCAT_00615	0.0	2039.6	Bifidobacteriales													Bacteria	2GWSR@201174,4CZ33@85004,COG0457@1,COG0457@2	NA|NA|NA	S	Tetratricopeptide repeat
DNDENEON_01905	547043.BIFPSEUDO_03848	0.0	1718.4	Bifidobacteriales	ligA	GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016874,GO:0016886,GO:0030312,GO:0033554,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430		R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400				Bacteria	2GJUY@201174,4CZBC@85004,COG0272@1,COG0272@2	NA|NA|NA	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DNDENEON_01906	547043.BIFPSEUDO_03847	2.4e-212	744.6	Bifidobacteriales	mrp	GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0040007,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141		ko:K03593					ko00000,ko03029,ko03036				Bacteria	2GJUZ@201174,4CZDC@85004,COG0489@1,COG0489@2	NA|NA|NA	D	Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP
DNDENEON_01907	1680.BADO_1006	2.9e-84	318.2	Bifidobacteriales	ykoE			ko:K16925		M00582			ko00000,ko00002,ko02000	3.A.1.30			Bacteria	2IDAN@201174,4D00D@85004,COG4721@1,COG4721@2	NA|NA|NA	S	ABC-type cobalt transport system, permease component
DNDENEON_01908	566552.BIFCAT_00621	1.2e-264	918.7	Bifidobacteriales	ykoD			ko:K01990,ko:K16785,ko:K16786,ko:K16787	ko02010,map02010	M00254,M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	2GJ0M@201174,4CYZ6@85004,COG1122@1,COG1122@2	NA|NA|NA	P	ATPases associated with a variety of cellular activities
DNDENEON_01909	566552.BIFCAT_00622	1.4e-145	522.3	Bifidobacteriales	cbiQ			ko:K16785,ko:K16786,ko:K16787	ko02010,map02010	M00582			ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35			Bacteria	2IDC9@201174,4CZM8@85004,COG0619@1,COG0619@2	NA|NA|NA	P	Cobalt transport protein
DNDENEON_01910	547043.BIFPSEUDO_03841	8e-252	875.9	Bifidobacteriales	argE												Bacteria	2GM84@201174,4CYZT@85004,COG0624@1,COG0624@2	NA|NA|NA	E	Peptidase dimerisation domain
DNDENEON_01911	566552.BIFCAT_00624	9.4e-94	349.7	Bifidobacteriales		GO:0008150,GO:0009605,GO:0009607,GO:0020012,GO:0030682,GO:0042783,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0075136											Bacteria	2AN86@1,2HWWU@201174,31D67@2,4CZZS@85004	NA|NA|NA	S	Protein of unknown function (DUF3043)
DNDENEON_01912	547043.BIFPSEUDO_03839	3.8e-247	860.5	Bifidobacteriales	lpdA		1.16.1.1,1.8.1.4	ko:K00382,ko:K00520	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147				Bacteria	2GIXY@201174,4CZEI@85004,COG1249@1,COG1249@2	NA|NA|NA	C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DNDENEON_01913	547043.BIFPSEUDO_03838	7.8e-143	513.1	Bifidobacteriales													Bacteria	2DBPK@1,2I87Y@201174,2ZA9M@2,4D302@85004	NA|NA|NA	S	Domain of unknown function (DUF4191)
DNDENEON_01914	547043.BIFPSEUDO_03836	7.8e-282	975.7	Bifidobacteriales	glnA	GO:0001968,GO:0003674,GO:0003824,GO:0004356,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006541,GO:0006542,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009405,GO:0009605,GO:0009607,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016020,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019222,GO:0019752,GO:0019899,GO:0020012,GO:0030162,GO:0030312,GO:0030682,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0035375,GO:0040007,GO:0043207,GO:0043436,GO:0044044,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046394,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0070613,GO:0071704,GO:0071944,GO:0075136,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1903317,GO:1903319	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727		R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147				Bacteria	2GMN1@201174,4CZNK@85004,COG0174@1,COG0174@2	NA|NA|NA	E	glutamine synthetase
DNDENEON_01915	547043.BIFPSEUDO_03835	1.5e-41	176.8	Bacteria													Bacteria	COG1002@1,COG1002@2	NA|NA|NA	V	DNA modification
DNDENEON_01916	547043.BIFPSEUDO_03833	8.3e-113	412.9	Bifidobacteriales	ung2		3.2.2.27	ko:K21929	ko03410,map03410				ko00000,ko00001,ko01000,ko03400				Bacteria	2IH02@201174,4D0XP@85004,COG1573@1,COG1573@2	NA|NA|NA	L	Uracil DNA glycosylase superfamily
DNDENEON_01917	663278.Ethha_1826	1.5e-17	94.7	Ruminococcaceae				ko:K07451					ko00000,ko01000,ko02048				Bacteria	1V7XZ@1239,24JNG@186801,3WSGV@541000,COG1403@1,COG1403@2	NA|NA|NA	L	HNH endonuclease
DNDENEON_01919	547043.BIFPSEUDO_03830	2.9e-17	94.0	Bacteria													Bacteria	2ENRX@1,33GD2@2	NA|NA|NA		
DNDENEON_01920	547043.BIFPSEUDO_03828	4.2e-95	354.0	Bifidobacteriales	yvdD		3.2.2.10	ko:K06966	ko00230,ko00240,map00230,map00240		R00182,R00510	RC00063,RC00318	ko00000,ko00001,ko01000				Bacteria	2GMM1@201174,4D031@85004,COG1611@1,COG1611@2	NA|NA|NA	S	Possible lysine decarboxylase
DNDENEON_01921	547043.BIFPSEUDO_03825	3.3e-158	564.3	Bifidobacteriales	IV02_28330		2.1.1.185,2.1.1.34	ko:K00556,ko:K03218,ko:K03437					ko00000,ko01000,ko03009,ko03016				Bacteria	2GJI6@201174,4CYZQ@85004,COG0566@1,COG0566@2	NA|NA|NA	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DNDENEON_01922	547043.BIFPSEUDO_03824	2.4e-203	714.5	Bifidobacteriales	pheS	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.20	ko:K01889	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GJGG@201174,4CZ78@85004,COG0016@1,COG0016@2	NA|NA|NA	J	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DNDENEON_01923	547043.BIFPSEUDO_03823	0.0	1739.9	Bifidobacteriales	pheT	GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0019538,GO:0019752,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2GMFD@201174,4CYUM@85004,COG0072@1,COG0072@2,COG0073@1,COG0073@2	NA|NA|NA	J	Phenylalanyl-tRNA synthetase beta
DNDENEON_01924	547043.BIFPSEUDO_03822	7.1e-98	363.6	Bifidobacteriales													Bacteria	2AHAX@1,2IPJ5@201174,317M8@2,4D11M@85004	NA|NA|NA		
DNDENEON_01925	547043.BIFPSEUDO_03821	4.1e-206	723.8	Bifidobacteriales	argC	GO:0000166,GO:0003674,GO:0005488,GO:0008150,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0048037,GO:0050661,GO:0050662,GO:0070401,GO:0097159,GO:1901265,GO:1901363	1.2.1.38	ko:K00145	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R03443	RC00684	ko00000,ko00001,ko00002,ko01000				Bacteria	2GKQK@201174,4CZNC@85004,COG0002@1,COG0002@2	NA|NA|NA	E	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DNDENEON_01926	547043.BIFPSEUDO_03820	8.8e-215	752.7	Bifidobacteriales	argJ	GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.1,2.3.1.35,2.7.2.8	ko:K00620,ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R00259,R02282,R02649	RC00002,RC00004,RC00043,RC00064	ko00000,ko00001,ko00002,ko01000				Bacteria	2GIW0@201174,4CZQQ@85004,COG1364@1,COG1364@2	NA|NA|NA	E	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DNDENEON_01927	547043.BIFPSEUDO_03819	8.2e-179	632.9	Bifidobacteriales	argB	GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0030312,GO:0031406,GO:0034618,GO:0036094,GO:0040007,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.8	ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R02649	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS10565,iJN678.argB,iLJ478.TM1784	Bacteria	2GKDS@201174,4CYYX@85004,COG0548@1,COG0548@2	NA|NA|NA	E	Belongs to the acetylglutamate kinase family. ArgB subfamily
DNDENEON_01928	566552.BIFCAT_00646	1e-240	839.0	Bifidobacteriales	argD	GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0008150,GO:0019842,GO:0030170,GO:0036094,GO:0040007,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363	2.6.1.11,2.6.1.17	ko:K00821	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00028,M00845	R02283,R04475	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007				Bacteria	2GKE9@201174,4CZGW@85004,COG4992@1,COG4992@2	NA|NA|NA	E	Aminotransferase class-III
DNDENEON_01929	547043.BIFPSEUDO_03816	4.6e-185	653.7	Bifidobacteriales	argF	GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0040007,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.1.3.3	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	M00029,M00844	R01398	RC00096	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ6H@201174,4CZGN@85004,COG0078@1,COG0078@2	NA|NA|NA	E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DNDENEON_01930	547043.BIFPSEUDO_03815	1.9e-84	318.5	Bifidobacteriales	argR	GO:0000820,GO:0000821,GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006259,GO:0006310,GO:0006355,GO:0006520,GO:0006521,GO:0006525,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009064,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016597,GO:0019219,GO:0019222,GO:0019752,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031333,GO:0031334,GO:0031406,GO:0032991,GO:0032993,GO:0033238,GO:0033241,GO:0034214,GO:0034618,GO:0034641,GO:0036094,GO:0042150,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043254,GO:0043436,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044281,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0060255,GO:0062012,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140110,GO:1900079,GO:1900081,GO:1901360,GO:1901363,GO:1901564,GO:1901605,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2000144,GO:2000282,GO:2001141		ko:K03402					ko00000,ko03000				Bacteria	2GKA5@201174,4D0VM@85004,COG1438@1,COG1438@2	NA|NA|NA	K	Regulates arginine biosynthesis genes
DNDENEON_01931	547043.BIFPSEUDO_03814	1.3e-237	828.6	Bifidobacteriales	argG	GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016020,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0040007,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0071944,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	6.3.4.5	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	M00029,M00844,M00845	R01954	RC00380,RC00629	ko00000,ko00001,ko00002,ko01000,ko04147			iNJ661.Rv1658	Bacteria	2GK96@201174,4CZ2R@85004,COG0137@1,COG0137@2	NA|NA|NA	E	Belongs to the argininosuccinate synthase family. Type 1 subfamily
DNDENEON_01932	547043.BIFPSEUDO_03813	2.2e-279	967.6	Bifidobacteriales	argH	GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0030312,GO:0040007,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.3.2.1	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	M00029,M00844,M00845	R01086	RC00445,RC00447	ko00000,ko00001,ko00002,ko01000,ko04147			iJN678.argH	Bacteria	2GJ2A@201174,4CZ50@85004,COG0165@1,COG0165@2	NA|NA|NA	E	argininosuccinate lyase
DNDENEON_01933	547043.BIFPSEUDO_03812	9.7e-94	349.4	Bifidobacteriales			6.1.1.14	ko:K01879,ko:K06950	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016				Bacteria	2IFXP@201174,4D0P2@85004,COG1418@1,COG1418@2	NA|NA|NA	S	Metal dependent phosphohydrolases with conserved 'HD' motif.
DNDENEON_01934	547043.BIFPSEUDO_03811	8.6e-137	493.0	Bifidobacteriales													Bacteria	2IA3M@201174,4CZY7@85004,COG4905@1,COG4905@2	NA|NA|NA	S	Putative ABC-transporter type IV
DNDENEON_01935	547043.BIFPSEUDO_03810	0.0	1218.0	Bifidobacteriales													Bacteria	2IB0C@201174,4D0E9@85004,COG4905@1,COG4905@2,COG5523@1,COG5523@2	NA|NA|NA	S	Protein of unknown function (DUF975)
DNDENEON_01936	547043.BIFPSEUDO_03809	3.8e-251	873.6	Bifidobacteriales	tyrS	GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0030312,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.1.1.1	ko:K01866	ko00970,map00970	M00359,M00360	R02918	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029				Bacteria	2GJPR@201174,4CZKG@85004,COG0162@1,COG0162@2	NA|NA|NA	J	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DNDENEON_01937	78346.BRUM_1059	1.5e-144	520.0	Bifidobacteriales													Bacteria	2GKX5@201174,4CYXN@85004,COG0457@1,COG0457@2	NA|NA|NA	L	Tetratricopeptide repeat
DNDENEON_01938	547043.BIFPSEUDO_03806	3.5e-191	674.1	Bifidobacteriales	yutF	GO:0000121,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009987,GO:0016042,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0030145,GO:0042578,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046872,GO:0046914,GO:0046983,GO:0050897,GO:0071704,GO:1901575	3.1.3.41	ko:K01101	ko00627,ko01120,map00627,map01120		R03024	RC00151	ko00000,ko00001,ko01000				Bacteria	2GK7V@201174,4CZ1Z@85004,COG0647@1,COG0647@2	NA|NA|NA	G	Haloacid dehalogenase-like hydrolase
DNDENEON_01939	547043.BIFPSEUDO_03805	2.9e-134	484.6	Bifidobacteriales	tlyA	GO:0000154,GO:0001510,GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019835,GO:0019836,GO:0022613,GO:0031167,GO:0031640,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035821,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044003,GO:0044004,GO:0044085,GO:0044179,GO:0044237,GO:0044238,GO:0044260,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046483,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.226,2.1.1.227	ko:K06442					ko00000,ko01000,ko03009				Bacteria	2GJVT@201174,4CZSS@85004,COG1189@1,COG1189@2	NA|NA|NA	J	Ribosomal RNA large subunit methyltransferase J
DNDENEON_01940	547043.BIFPSEUDO_03804	1.2e-115	422.5	Bifidobacteriales	trkA			ko:K03499					ko00000,ko02000	2.A.38.1,2.A.38.4			Bacteria	2IA09@201174,4CZVT@85004,COG0569@1,COG0569@2	NA|NA|NA	P	TrkA-N domain
DNDENEON_01941	547043.BIFPSEUDO_03803	2.1e-266	924.5	Bifidobacteriales	trkB			ko:K03498					ko00000,ko02000	2.A.38.1,2.A.38.4			Bacteria	2GKKS@201174,4CZH7@85004,COG0168@1,COG0168@2	NA|NA|NA	P	Cation transport protein
DNDENEON_01942	547043.BIFPSEUDO_03802	2e-177	628.2	Bifidobacteriales	nadK	GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006793,GO:0006796,GO:0006797,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	2.7.1.23	ko:K00858	ko00760,ko01100,map00760,map01100		R00104	RC00002,RC00078	ko00000,ko00001,ko01000				Bacteria	2GKM2@201174,4CYZ0@85004,COG0061@1,COG0061@2	NA|NA|NA	H	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DNDENEON_01943	547043.BIFPSEUDO_03801	1.1e-261	909.1	Bifidobacteriales	recN	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0030312,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360		ko:K03631,ko:K13582	ko04112,map04112				ko00000,ko00001,ko03400				Bacteria	2GIVG@201174,4CYYF@85004,COG0497@1,COG0497@2	NA|NA|NA	L	May be involved in recombinational repair of damaged DNA
DNDENEON_01944	547043.BIFPSEUDO_03800	2.9e-122	444.5	Bifidobacteriales													Bacteria	2I362@201174,4CZ8D@85004,COG0637@1,COG0637@2	NA|NA|NA	S	Haloacid dehalogenase-like hydrolase
DNDENEON_01945	547043.BIFPSEUDO_03799	4.8e-123	447.2	Bifidobacteriales													Bacteria	29XRE@1,2IJCR@201174,30JH3@2,4D0VP@85004	NA|NA|NA	S	ABC-2 family transporter protein
DNDENEON_01946	547043.BIFPSEUDO_03798	2.3e-173	614.8	Bifidobacteriales				ko:K01990		M00254			ko00000,ko00002,ko02000	3.A.1			Bacteria	2GRE8@201174,4CZBH@85004,COG1131@1,COG1131@2	NA|NA|NA	V	ATPases associated with a variety of cellular activities
DNDENEON_01947	547043.BIFPSEUDO_03797	1.7e-58	231.9	Bifidobacteriales				ko:K07978,ko:K07979					ko00000,ko03000				Bacteria	2IQEW@201174,4D152@85004,COG1725@1,COG1725@2	NA|NA|NA	K	helix_turn_helix gluconate operon transcriptional repressor
DNDENEON_01948	1680.BADO_0968	1.1e-23	115.5	Bifidobacteriales													Bacteria	2HQSF@201174,4D0CG@85004,COG2421@1,COG2421@2	NA|NA|NA	C	Acetamidase/Formamidase family
DNDENEON_01949	547043.BIFPSEUDO_03793	1.6e-44	184.9	Bacteria													Bacteria	COG2801@1,COG2801@2	NA|NA|NA	L	transposition
DNDENEON_01950	547043.BIFPSEUDO_03792	0.0	1244.6	Bifidobacteriales													Bacteria	2DBBJ@1,2GKDX@201174,2Z889@2,4CZGI@85004	NA|NA|NA	S	Histidine phosphatase superfamily (branch 2)
DNDENEON_01951	1680.BADO_0967	1.1e-95	355.9	Bifidobacteriales				ko:K07005					ko00000				Bacteria	2IGUA@201174,4D0SF@85004,COG3467@1,COG3467@2	NA|NA|NA	S	Pyridoxamine 5'-phosphate oxidase
DNDENEON_01952	547043.BIFPSEUDO_03790	1.6e-23	114.8	Bifidobacteriales													Bacteria	2BDTE@1,2HD65@201174,327H7@2,4D2ND@85004	NA|NA|NA	S	Psort location Cytoplasmic, score 8.87
DNDENEON_01953	566552.BIFCAT_00673	4.1e-95	354.0	Bifidobacteriales	bcp	GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0032843,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748	1.11.1.15	ko:K03564					ko00000,ko01000			iPC815.YPO3064	Bacteria	2IHZ6@201174,4D0PN@85004,COG1225@1,COG1225@2	NA|NA|NA	O	Redoxin
DNDENEON_01955	547043.BIFPSEUDO_03786	1.6e-55	221.9	Bifidobacteriales			3.4.13.22	ko:K08641,ko:K11206	ko01502,ko02020,map01502,map02020	M00651			ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504				Bacteria	2HZIM@201174,4D0K3@85004,COG0388@1,COG0388@2	NA|NA|NA	S	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DNDENEON_01956	547043.BIFPSEUDO_03785	2e-166	591.7	Bifidobacteriales													Bacteria	2HZIM@201174,4D0K3@85004,COG0388@1,COG0388@2	NA|NA|NA	S	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DNDENEON_01957	566552.BIFCAT_00679	6.9e-164	583.2	Bifidobacteriales													Bacteria	2GJGM@201174,4CZMJ@85004,COG1028@1,COG1028@2	NA|NA|NA	IQ	Enoyl-(Acyl carrier protein) reductase
DNDENEON_01958	547043.BIFPSEUDO_03783	7.7e-145	519.6	Bifidobacteriales													Bacteria	2ENA9@1,2IHCR@201174,33FXZ@2,4CZCJ@85004	NA|NA|NA		
DNDENEON_01959	1680.BADO_0954	7.4e-174	616.3	Bifidobacteriales													Bacteria	2ICFW@201174,4D07M@85004,COG3177@1,COG3177@2	NA|NA|NA	G	Fic/DOC family
DNDENEON_01960	1680.BADO_0953	1e-107	396.0	Bifidobacteriales			3.1.3.27	ko:K18697	ko00564,map00564		R02029	RC00017	ko00000,ko00001,ko01000				Bacteria	2GMVR@201174,4D0CF@85004,COG0560@1,COG0560@2	NA|NA|NA	E	haloacid dehalogenase-like hydrolase
DNDENEON_01961	1680.BADO_0952	1e-232	812.4	Bifidobacteriales													Bacteria	2I8HS@201174,4CZ4M@85004,COG0477@1,COG2814@2	NA|NA|NA	EGP	Major facilitator Superfamily
DNDENEON_01962	547043.BIFPSEUDO_03778	2.3e-284	984.2	Bifidobacteriales	thrC		4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000			iHN637.CLJU_RS16355,iIT341.HP0098	Bacteria	2GIRY@201174,4CYS0@85004,COG0498@1,COG0498@2	NA|NA|NA	E	Threonine synthase N terminus
DNDENEON_01963	547043.BIFPSEUDO_03776	6.5e-251	872.8	Bifidobacteriales	glyA	GO:0001505,GO:0003674,GO:0003824,GO:0004372,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006544,GO:0006563,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009069,GO:0009605,GO:0009607,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019752,GO:0019842,GO:0020012,GO:0030170,GO:0030312,GO:0030682,GO:0036094,GO:0042133,GO:0042783,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044464,GO:0046983,GO:0048037,GO:0050662,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0065007,GO:0065008,GO:0070279,GO:0071704,GO:0071944,GO:0075136,GO:0097159,GO:1901363,GO:1901564,GO:1901605	2.1.2.1	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	M00140,M00141,M00346,M00532	R00945,R09099	RC00022,RC00112,RC01583,RC02958	ko00000,ko00001,ko00002,ko01000				Bacteria	2GK7U@201174,4CZBV@85004,COG0112@1,COG0112@2	NA|NA|NA	E	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DNDENEON_01964	547043.BIFPSEUDO_03775	6.5e-243	846.3	Bifidobacteriales	proA	GO:0003674,GO:0003824,GO:0004350,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016620,GO:0016903,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071944	1.2.1.41	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	M00015	R03313	RC00684	ko00000,ko00001,ko00002,ko01000			iLJ478.TM0293,iNJ661.Rv2427c,iYO844.BSU13130	Bacteria	2GISA@201174,4CZ2H@85004,COG0014@1,COG0014@2	NA|NA|NA	E	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DNDENEON_01965	547043.BIFPSEUDO_03774	3.2e-101	374.4	Bifidobacteriales													Bacteria	2A13J@1,2GKGD@201174,30P9F@2,4D0QR@85004	NA|NA|NA		
DNDENEON_01966	547043.BIFPSEUDO_03773	1.8e-141	508.4	Bifidobacteriales	nadD	GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	2.7.7.18,3.6.1.55	ko:K00969,ko:K03574	ko00760,ko01100,map00760,map01100	M00115	R00137,R03005	RC00002	ko00000,ko00001,ko00002,ko01000,ko03400				Bacteria	2GMFZ@201174,4CZ82@85004,COG1057@1,COG1057@2	NA|NA|NA	H	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DNDENEON_01967	547043.BIFPSEUDO_03772	6.6e-201	706.4	Bifidobacteriales	prs	GO:0000287,GO:0003674,GO:0003824,GO:0004749,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006015,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0019637,GO:0019693,GO:0030145,GO:0030312,GO:0040007,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0046390,GO:0046391,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901576	2.7.6.1	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	M00005	R01049	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000				Bacteria	2GJ9S@201174,4CYRD@85004,COG0462@1,COG0462@2	NA|NA|NA	F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DNDENEON_01969	585394.RHOM_02065	5.3e-20	104.0	Clostridia													Bacteria	1TRGI@1239,24U6D@186801,28IAH@1,2Z8D3@2	NA|NA|NA		
DNDENEON_01970	622312.ROSEINA2194_03095	7.7e-45	186.4	Clostridia				ko:K07484					ko00000				Bacteria	1V7U9@1239,24K4W@186801,COG3436@1,COG3436@2	NA|NA|NA	L	PFAM IS66 Orf2
DNDENEON_01971	97139.C824_00397	1.4e-181	642.9	Clostridiaceae				ko:K07484					ko00000				Bacteria	1VZPC@1239,251Y5@186801,36UP2@31979,COG3316@1,COG3316@2	NA|NA|NA	L	Transposase IS66 family
# 1798 queries scanned
# Total time (seconds): 4.41926598549
# Rate: 406.85 q/s