GCA_008764245.1 - 5 region(s)

Identified primary metabolite regions

VTQV01000017.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 46.1	TPP_AA_metabolism	Putative	38,608	64,073

VTQV01000022.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	Fumarate2succinate	SCFA	52,146	64,956	Leucine reductive branch C. difficile	LEU	25%

VTQV01000025.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	TPP_AA_metabolism	Putative	28,160	61,799	Acetyl-CoA pathway C. beijerinckii	Acetate	13%

VTQV01000069.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 103.1	fatty_acids-unassigned	Putative	1	17,688	Acetate to butyrate C. sporogenes	BUT	33%

VTQV01000007.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 115.1	Nitrate_reductase	E-MGC	38,737	65,180	Nitrate reductase E. coli	NIR	60%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 46.1	TPP_AA_metabolism	Putative	38,608	64,073
Region 52.1	Fumarate2succinate	SCFA	52,146	64,956	Leucine reductive branch C. difficile	LEU	25%
Region 55.1	TPP_AA_metabolism	Putative	28,160	61,799	Acetyl-CoA pathway C. beijerinckii	Acetate	13%
Region 103.1	fatty_acids-unassigned	Putative	1	17,688	Acetate to butyrate C. sporogenes	BUT	33%
Region 115.1	Nitrate_reductase	E-MGC	38,737	65,180	Nitrate reductase E. coli	NIR	60%

No primary metabolite regions were found in these records:: VTQV01000100.1; VTQV01000101.1; VTQV01000102.1; VTQV01000103.1; VTQV01000104.1; VTQV01000105.1; VTQV01000106.1; VTQV01000107.1; VTQV01000108.1; VTQV01000109.1; VTQV01000010.1; VTQV01000110.1; VTQV01000111.1; VTQV01000112.1; VTQV01000113.1; VTQV01000114.1; VTQV01000115.1; VTQV01000116.1; VTQV01000117.1; VTQV01000118.1; VTQV01000119.1; VTQV01000011.1; VTQV01000120.1; VTQV01000121.1; VTQV01000122.1; VTQV01000123.1; VTQV01000124.1; VTQV01000125.1; VTQV01000126.1; VTQV01000127.1; VTQV01000128.1; VTQV01000129.1; VTQV01000012.1; VTQV01000130.1; VTQV01000131.1; VTQV01000132.1; VTQV01000133.1; VTQV01000134.1; VTQV01000135.1; VTQV01000136.1; VTQV01000137.1; VTQV01000013.1; VTQV01000014.1; VTQV01000015.1; VTQV01000016.1; VTQV01000018.1; VTQV01000019.1; VTQV01000001.1; VTQV01000020.1; VTQV01000021.1; VTQV01000023.1; VTQV01000024.1; VTQV01000026.1; VTQV01000027.1; VTQV01000028.1; VTQV01000029.1; VTQV01000002.1; VTQV01000030.1; VTQV01000031.1; VTQV01000032.1; VTQV01000033.1; VTQV01000034.1; VTQV01000035.1; VTQV01000036.1; VTQV01000037.1; VTQV01000038.1; VTQV01000039.1; VTQV01000003.1; VTQV01000040.1; VTQV01000041.1; VTQV01000042.1; VTQV01000043.1; VTQV01000044.1; VTQV01000045.1; VTQV01000046.1; VTQV01000047.1; VTQV01000048.1; VTQV01000049.1; VTQV01000004.1; VTQV01000050.1; VTQV01000051.1; VTQV01000052.1; VTQV01000053.1; VTQV01000054.1; VTQV01000055.1; VTQV01000056.1; VTQV01000057.1; VTQV01000058.1; VTQV01000059.1; VTQV01000005.1; VTQV01000060.1; VTQV01000061.1; VTQV01000062.1; VTQV01000063.1; VTQV01000064.1; VTQV01000065.1; VTQV01000066.1; VTQV01000067.1; VTQV01000068.1; VTQV01000006.1; VTQV01000070.1; VTQV01000071.1; VTQV01000072.1; VTQV01000073.1; VTQV01000074.1; VTQV01000075.1; VTQV01000076.1; VTQV01000077.1; VTQV01000078.1; VTQV01000079.1; VTQV01000080.1; VTQV01000081.1; VTQV01000082.1; VTQV01000083.1; VTQV01000084.1; VTQV01000085.1; VTQV01000086.1; VTQV01000087.1; VTQV01000088.1; VTQV01000089.1; VTQV01000008.1; VTQV01000090.1; VTQV01000091.1; VTQV01000092.1; VTQV01000093.1; VTQV01000094.1; VTQV01000095.1; VTQV01000096.1; VTQV01000097.1; VTQV01000098.1; VTQV01000099.1; VTQV01000009.1

Compact view

VTQV01000017.1 - Region 1 - TPP_AA_metabolism

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Location: 38,608 - 64,073 nt. (total: 25,466 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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No matches found.

VTQV01000022.1 - Region 1 - Fumarate2succinate

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Location: 52,146 - 64,956 nt. (total: 12,811 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

Similar known gene clusters

VTQV01000025.1 - Region 1 - TPP_AA_metabolism

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Location: 28,160 - 61,799 nt. (total: 33,640 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

VTQV01000069.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 17,688 nt. (total: 17,688 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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regulatory genes

resistance genes

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KnownClusterBlast

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VTQV01000007.1 - Region 1 - Nitrate_reductase

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Location: 38,737 - 65,180 nt. (total: 26,444 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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