GCA_009159495.1 - 2 region(s)

Identified primary metabolite regions

WDOY01000010.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Pyruvate2acetate-formate,Fumarate2succinate	SCFA	1	41,233	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

WDOY01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Others_HGD_unassigned	Putative	384,264	409,288

No primary metabolite regions were found in these records:: WDOY01000100.1; WDOY01000101.1; WDOY01000102.1; WDOY01000103.1; WDOY01000104.1; WDOY01000105.1; WDOY01000106.1; WDOY01000107.1; WDOY01000108.1; WDOY01000109.1; WDOY01000110.1; WDOY01000111.1; WDOY01000112.1; WDOY01000113.1; WDOY01000114.1; WDOY01000115.1; WDOY01000116.1; WDOY01000117.1; WDOY01000118.1; WDOY01000119.1; WDOY01000011.1; WDOY01000120.1; WDOY01000121.1; WDOY01000122.1; WDOY01000123.1; WDOY01000124.1; WDOY01000125.1; WDOY01000126.1; WDOY01000127.1; WDOY01000128.1; WDOY01000012.1; WDOY01000013.1; WDOY01000014.1; WDOY01000015.1; WDOY01000016.1; WDOY01000017.1; WDOY01000018.1; WDOY01000019.1; WDOY01000020.1; WDOY01000021.1; WDOY01000022.1; WDOY01000023.1; WDOY01000024.1; WDOY01000025.1; WDOY01000026.1; WDOY01000027.1; WDOY01000028.1; WDOY01000029.1; WDOY01000002.1; WDOY01000030.1; WDOY01000129.1; WDOY01000031.1; WDOY01000032.1; WDOY01000033.1; WDOY01000034.1; WDOY01000035.1; WDOY01000036.1; WDOY01000037.1; WDOY01000038.1; WDOY01000039.1; WDOY01000003.1; WDOY01000040.1; WDOY01000041.1; WDOY01000042.1; WDOY01000043.1; WDOY01000044.1; WDOY01000045.1; WDOY01000046.1; WDOY01000047.1; WDOY01000048.1; WDOY01000049.1; WDOY01000004.1; WDOY01000050.1; WDOY01000051.1; WDOY01000052.1; WDOY01000053.1; WDOY01000054.1; WDOY01000055.1; WDOY01000056.1; WDOY01000057.1; WDOY01000058.1; WDOY01000059.1; WDOY01000005.1; WDOY01000060.1; WDOY01000061.1; WDOY01000062.1; WDOY01000063.1; WDOY01000064.1; WDOY01000065.1; WDOY01000066.1; WDOY01000067.1; WDOY01000068.1; WDOY01000069.1; WDOY01000006.1; WDOY01000070.1; WDOY01000071.1; WDOY01000072.1; WDOY01000073.1; WDOY01000074.1; WDOY01000075.1; WDOY01000076.1; WDOY01000077.1; WDOY01000078.1; WDOY01000079.1; WDOY01000007.1; WDOY01000080.1; WDOY01000081.1; WDOY01000082.1; WDOY01000083.1; WDOY01000084.1; WDOY01000085.1; WDOY01000086.1; WDOY01000087.1; WDOY01000088.1; WDOY01000089.1; WDOY01000008.1; WDOY01000090.1; WDOY01000091.1; WDOY01000092.1; WDOY01000093.1; WDOY01000094.1; WDOY01000095.1; WDOY01000096.1; WDOY01000097.1; WDOY01000098.1; WDOY01000099.1; WDOY01000009.1

Compact view

WDOY01000010.1 - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 41,233 nt. (total: 41,233 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

WDOY01000001.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 384,264 - 409,288 nt. (total: 25,025 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.