GCA_009389025.1 - 3 region(s)

Identified primary metabolite regions

QKPR01000036.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Nitrate_reductase	E-MGC	1	17,978	Nitrate reductase E. coli	NIR	40%

QKPR01000046.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	TPP_AA_metabolism	Putative	1	14,054

QKPR01000007.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 102.1	pdu	SCFA-other	9,455	47,954	Propanediol degradation S. enterica	PDU	66%

No primary metabolite regions were found in these records:: QKPR01000100.1; QKPR01000101.1; QKPR01000102.1; QKPR01000103.1; QKPR01000104.1; QKPR01000105.1; QKPR01000106.1; QKPR01000107.1; QKPR01000108.1; QKPR01000109.1; QKPR01000010.1; QKPR01000110.1; QKPR01000111.1; QKPR01000112.1; QKPR01000113.1; QKPR01000114.1; QKPR01000115.1; QKPR01000116.1; QKPR01000117.1; QKPR01000118.1; QKPR01000119.1; QKPR01000011.1; QKPR01000120.1; QKPR01000121.1; QKPR01000122.1; QKPR01000123.1; QKPR01000124.1; QKPR01000012.1; QKPR01000013.1; QKPR01000014.1; QKPR01000015.1; QKPR01000016.1; QKPR01000017.1; QKPR01000018.1; QKPR01000019.1; QKPR01000001.1; QKPR01000020.1; QKPR01000021.1; QKPR01000022.1; QKPR01000023.1; QKPR01000024.1; QKPR01000025.1; QKPR01000026.1; QKPR01000027.1; QKPR01000028.1; QKPR01000029.1; QKPR01000002.1; QKPR01000030.1; QKPR01000031.1; QKPR01000032.1; QKPR01000033.1; QKPR01000034.1; QKPR01000035.1; QKPR01000037.1; QKPR01000038.1; QKPR01000039.1; QKPR01000003.1; QKPR01000040.1; QKPR01000041.1; QKPR01000042.1; QKPR01000043.1; QKPR01000044.1; QKPR01000045.1; QKPR01000047.1; QKPR01000048.1; QKPR01000049.1; QKPR01000004.1; QKPR01000050.1; QKPR01000051.1; QKPR01000052.1; QKPR01000053.1; QKPR01000054.1; QKPR01000055.1; QKPR01000056.1; QKPR01000057.1; QKPR01000058.1; QKPR01000059.1; QKPR01000005.1; QKPR01000060.1; QKPR01000061.1; QKPR01000062.1; QKPR01000063.1; QKPR01000064.1; QKPR01000065.1; QKPR01000066.1; QKPR01000067.1; QKPR01000068.1; QKPR01000069.1; QKPR01000006.1; QKPR01000070.1; QKPR01000071.1; QKPR01000072.1; QKPR01000073.1; QKPR01000074.1; QKPR01000075.1; QKPR01000076.1; QKPR01000077.1; QKPR01000078.1; QKPR01000079.1; QKPR01000080.1; QKPR01000081.1; QKPR01000082.1; QKPR01000083.1; QKPR01000084.1; QKPR01000085.1; QKPR01000086.1; QKPR01000087.1; QKPR01000088.1; QKPR01000089.1; QKPR01000008.1; QKPR01000090.1; QKPR01000091.1; QKPR01000092.1; QKPR01000093.1; QKPR01000094.1; QKPR01000095.1; QKPR01000096.1; QKPR01000097.1; QKPR01000098.1; QKPR01000099.1; QKPR01000009.1

Compact view

QKPR01000036.1 - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 1 - 17,978 nt. (total: 17,978 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

QKPR01000046.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 1 - 14,054 nt. (total: 14,054 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

QKPR01000007.1 - Region 1 - pdu

Download region GenBank file

Location: 9,455 - 47,954 nt. (total: 38,500 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters