GCA_009389035.1 - 2 region(s)

Identified primary metabolite regions

QKPT01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 88.1	pdu	SCFA-other	10,523	49,022	Propanediol degradation S. enterica	PDU	66%

QKPT01000009.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 97.1	TPP_AA_metabolism	Putative	19,588	56,811

No primary metabolite regions were found in these records:: QKPT01000010.1; QKPT01000011.1; QKPT01000012.1; QKPT01000013.1; QKPT01000014.1; QKPT01000015.1; QKPT01000016.1; QKPT01000017.1; QKPT01000018.1; QKPT01000019.1; QKPT01000001.1; QKPT01000020.1; QKPT01000021.1; QKPT01000022.1; QKPT01000023.1; QKPT01000024.1; QKPT01000025.1; QKPT01000026.1; QKPT01000027.1; QKPT01000028.1; QKPT01000029.1; QKPT01000002.1; QKPT01000030.1; QKPT01000031.1; QKPT01000032.1; QKPT01000033.1; QKPT01000034.1; QKPT01000035.1; QKPT01000036.1; QKPT01000037.1; QKPT01000038.1; QKPT01000039.1; QKPT01000003.1; QKPT01000040.1; QKPT01000041.1; QKPT01000042.1; QKPT01000043.1; QKPT01000044.1; QKPT01000045.1; QKPT01000046.1; QKPT01000047.1; QKPT01000048.1; QKPT01000049.1; QKPT01000004.1; QKPT01000050.1; QKPT01000051.1; QKPT01000052.1; QKPT01000053.1; QKPT01000054.1; QKPT01000055.1; QKPT01000056.1; QKPT01000057.1; QKPT01000058.1; QKPT01000059.1; QKPT01000005.1; QKPT01000060.1; QKPT01000061.1; QKPT01000062.1; QKPT01000063.1; QKPT01000064.1; QKPT01000065.1; QKPT01000066.1; QKPT01000067.1; QKPT01000068.1; QKPT01000069.1; QKPT01000006.1; QKPT01000070.1; QKPT01000071.1; QKPT01000072.1; QKPT01000073.1; QKPT01000074.1; QKPT01000075.1; QKPT01000076.1; QKPT01000077.1; QKPT01000078.1; QKPT01000079.1; QKPT01000007.1; QKPT01000080.1; QKPT01000081.1; QKPT01000082.1; QKPT01000083.1; QKPT01000084.1; QKPT01000085.1; QKPT01000086.1; QKPT01000087.1; QKPT01000088.1; QKPT01000089.1; QKPT01000090.1; QKPT01000091.1; QKPT01000092.1; QKPT01000093.1; QKPT01000094.1; QKPT01000095.1; QKPT01000096.1; QKPT01000097.1

Compact view

QKPT01000008.1 - Region 1 - pdu

Download region GenBank file

Location: 10,523 - 49,022 nt. (total: 38,500 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QKPT01000009.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 19,588 - 56,811 nt. (total: 37,224 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.