GCA_009389165.1 - 3 region(s)

Identified primary metabolite regions

QKPX01000038.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	Nitrate_reductase	E-MGC	1	17,978	Nitrate reductase E. coli	NIR	40%

QKPX01000048.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	TPP_AA_metabolism	Putative	1	14,054

QKPX01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	pdu	SCFA-other	9,455	47,954	Propanediol degradation S. enterica	PDU	66%

No primary metabolite regions were found in these records:: QKPX01000100.1; QKPX01000101.1; QKPX01000102.1; QKPX01000103.1; QKPX01000104.1; QKPX01000105.1; QKPX01000010.1; QKPX01000011.1; QKPX01000012.1; QKPX01000013.1; QKPX01000014.1; QKPX01000015.1; QKPX01000016.1; QKPX01000017.1; QKPX01000018.1; QKPX01000019.1; QKPX01000001.1; QKPX01000020.1; QKPX01000021.1; QKPX01000022.1; QKPX01000023.1; QKPX01000024.1; QKPX01000025.1; QKPX01000026.1; QKPX01000027.1; QKPX01000028.1; QKPX01000029.1; QKPX01000002.1; QKPX01000030.1; QKPX01000031.1; QKPX01000032.1; QKPX01000033.1; QKPX01000034.1; QKPX01000035.1; QKPX01000036.1; QKPX01000037.1; QKPX01000039.1; QKPX01000003.1; QKPX01000040.1; QKPX01000041.1; QKPX01000042.1; QKPX01000043.1; QKPX01000044.1; QKPX01000045.1; QKPX01000046.1; QKPX01000047.1; QKPX01000049.1; QKPX01000004.1; QKPX01000050.1; QKPX01000051.1; QKPX01000052.1; QKPX01000053.1; QKPX01000054.1; QKPX01000055.1; QKPX01000056.1; QKPX01000057.1; QKPX01000058.1; QKPX01000059.1; QKPX01000005.1; QKPX01000060.1; QKPX01000061.1; QKPX01000062.1; QKPX01000063.1; QKPX01000064.1; QKPX01000065.1; QKPX01000066.1; QKPX01000067.1; QKPX01000068.1; QKPX01000069.1; QKPX01000070.1; QKPX01000071.1; QKPX01000072.1; QKPX01000073.1; QKPX01000074.1; QKPX01000075.1; QKPX01000076.1; QKPX01000077.1; QKPX01000078.1; QKPX01000079.1; QKPX01000007.1; QKPX01000080.1; QKPX01000081.1; QKPX01000082.1; QKPX01000083.1; QKPX01000084.1; QKPX01000085.1; QKPX01000086.1; QKPX01000087.1; QKPX01000088.1; QKPX01000089.1; QKPX01000008.1; QKPX01000090.1; QKPX01000091.1; QKPX01000092.1; QKPX01000093.1; QKPX01000094.1; QKPX01000095.1; QKPX01000096.1; QKPX01000097.1; QKPX01000098.1; QKPX01000099.1; QKPX01000009.1

Compact view

QKPX01000038.1 - Region 1 - Nitrate_reductase

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Location: 1 - 17,978 nt. (total: 17,978 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QKPX01000048.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 14,054 nt. (total: 14,054 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

QKPX01000006.1 - Region 1 - pdu

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Location: 9,455 - 47,954 nt. (total: 38,500 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters