GCA_009389375.1 - 3 region(s)

Identified primary metabolite regions

QKQI01000010.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	pdu	SCFA-other	16,396	54,895	Propanediol degradation S. enterica	PDU	66%

QKQI01000033.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Nitrate_reductase	E-MGC	5,491	22,432	Nitrate reductase E. coli	NIR	40%

QKQI01000004.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	TPP_AA_metabolism	Putative	32,433	69,658

No primary metabolite regions were found in these records:: QKQI01000011.1; QKQI01000012.1; QKQI01000013.1; QKQI01000014.1; QKQI01000015.1; QKQI01000016.1; QKQI01000017.1; QKQI01000018.1; QKQI01000019.1; QKQI01000001.1; QKQI01000020.1; QKQI01000021.1; QKQI01000022.1; QKQI01000023.1; QKQI01000024.1; QKQI01000025.1; QKQI01000026.1; QKQI01000027.1; QKQI01000028.1; QKQI01000029.1; QKQI01000002.1; QKQI01000030.1; QKQI01000031.1; QKQI01000032.1; QKQI01000034.1; QKQI01000035.1; QKQI01000036.1; QKQI01000037.1; QKQI01000038.1; QKQI01000039.1; QKQI01000003.1; QKQI01000040.1; QKQI01000041.1; QKQI01000042.1; QKQI01000043.1; QKQI01000044.1; QKQI01000045.1; QKQI01000046.1; QKQI01000047.1; QKQI01000048.1; QKQI01000049.1; QKQI01000050.1; QKQI01000051.1; QKQI01000052.1; QKQI01000053.1; QKQI01000054.1; QKQI01000055.1; QKQI01000056.1; QKQI01000057.1; QKQI01000058.1; QKQI01000059.1; QKQI01000005.1; QKQI01000060.1; QKQI01000061.1; QKQI01000062.1; QKQI01000063.1; QKQI01000064.1; QKQI01000065.1; QKQI01000066.1; QKQI01000067.1; QKQI01000068.1; QKQI01000069.1; QKQI01000006.1; QKQI01000070.1; QKQI01000071.1; QKQI01000072.1; QKQI01000073.1; QKQI01000074.1; QKQI01000075.1; QKQI01000076.1; QKQI01000077.1; QKQI01000078.1; QKQI01000079.1; QKQI01000007.1; QKQI01000080.1; QKQI01000081.1; QKQI01000082.1; QKQI01000083.1; QKQI01000084.1; QKQI01000085.1; QKQI01000086.1; QKQI01000087.1; QKQI01000088.1; QKQI01000089.1; QKQI01000008.1; QKQI01000090.1; QKQI01000091.1; QKQI01000092.1; QKQI01000093.1; QKQI01000094.1; QKQI01000095.1; QKQI01000096.1; QKQI01000097.1; QKQI01000098.1; QKQI01000009.1

Compact view

QKQI01000010.1 - Region 1 - pdu

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Location: 16,396 - 54,895 nt. (total: 38,500 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QKQI01000033.1 - Region 1 - Nitrate_reductase

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Location: 5,491 - 22,432 nt. (total: 16,942 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QKQI01000004.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 32,433 - 69,658 nt. (total: 37,226 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.