GCA_009389425.1 - 2 region(s)

Identified primary metabolite regions

QKQM01000005.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 70.1	pdu	SCFA-other	9,513	48,012	Propanediol degradation S. enterica	PDU	66%

QKQM01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 103.1	TPP_AA_metabolism	Putative	8,154	45,377

No primary metabolite regions were found in these records:: QKQM01000100.1; QKQM01000101.1; QKQM01000102.1; QKQM01000103.1; QKQM01000104.1; QKQM01000105.1; QKQM01000106.1; QKQM01000107.1; QKQM01000108.1; QKQM01000109.1; QKQM01000010.1; QKQM01000110.1; QKQM01000111.1; QKQM01000112.1; QKQM01000113.1; QKQM01000114.1; QKQM01000011.1; QKQM01000012.1; QKQM01000013.1; QKQM01000014.1; QKQM01000015.1; QKQM01000016.1; QKQM01000017.1; QKQM01000018.1; QKQM01000019.1; QKQM01000001.1; QKQM01000020.1; QKQM01000021.1; QKQM01000022.1; QKQM01000023.1; QKQM01000024.1; QKQM01000025.1; QKQM01000026.1; QKQM01000027.1; QKQM01000028.1; QKQM01000029.1; QKQM01000002.1; QKQM01000030.1; QKQM01000031.1; QKQM01000032.1; QKQM01000033.1; QKQM01000034.1; QKQM01000035.1; QKQM01000036.1; QKQM01000037.1; QKQM01000038.1; QKQM01000039.1; QKQM01000003.1; QKQM01000040.1; QKQM01000041.1; QKQM01000042.1; QKQM01000043.1; QKQM01000044.1; QKQM01000045.1; QKQM01000046.1; QKQM01000047.1; QKQM01000048.1; QKQM01000049.1; QKQM01000004.1; QKQM01000050.1; QKQM01000051.1; QKQM01000052.1; QKQM01000053.1; QKQM01000054.1; QKQM01000055.1; QKQM01000056.1; QKQM01000057.1; QKQM01000058.1; QKQM01000059.1; QKQM01000060.1; QKQM01000061.1; QKQM01000062.1; QKQM01000063.1; QKQM01000064.1; QKQM01000065.1; QKQM01000066.1; QKQM01000067.1; QKQM01000068.1; QKQM01000069.1; QKQM01000006.1; QKQM01000070.1; QKQM01000071.1; QKQM01000072.1; QKQM01000073.1; QKQM01000074.1; QKQM01000075.1; QKQM01000076.1; QKQM01000077.1; QKQM01000078.1; QKQM01000079.1; QKQM01000007.1; QKQM01000080.1; QKQM01000081.1; QKQM01000082.1; QKQM01000083.1; QKQM01000084.1; QKQM01000085.1; QKQM01000086.1; QKQM01000087.1; QKQM01000088.1; QKQM01000089.1; QKQM01000090.1; QKQM01000091.1; QKQM01000092.1; QKQM01000093.1; QKQM01000094.1; QKQM01000095.1; QKQM01000096.1; QKQM01000097.1; QKQM01000098.1; QKQM01000099.1; QKQM01000009.1

Compact view

QKQM01000005.1 - Region 1 - pdu

Download region GenBank file

Location: 9,513 - 48,012 nt. (total: 38,500 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

QKQM01000008.1 - Region 1 - TPP_AA_metabolism

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Location: 8,154 - 45,377 nt. (total: 37,224 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.