Select genomic region:
Overview
44.1
65.1
107.1

### Identified secondary metabolite regions using strictness 'relaxed'

QKQN01000034.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 44.1 | lanthipeptide-class-ii,RiPP-like | 1 | 16,085 |

QKQN01000053.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 65.1 | NRPS | 1 | 13,974 |

QKQN01000091.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 107.1 | T3PKS | 1 | 4,476 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 44.1 | lanthipeptide-class-ii,RiPP-like | 1 | 16,085 |
Region 65.1 | NRPS | 1 | 13,974 |
Region 107.1 | T3PKS | 1 | 4,476 |

No secondary metabolite regions were found in these records:
  QKQN01000100.1
  QKQN01000101.1
  QKQN01000102.1
  QKQN01000103.1
  QKQN01000104.1
  QKQN01000105.1
  QKQN01000106.1
  QKQN01000107.1
  QKQN01000108.1
  QKQN01000109.1
  QKQN01000010.1
  QKQN01000110.1
  QKQN01000111.1
  QKQN01000112.1
  QKQN01000113.1
  QKQN01000114.1
  QKQN01000115.1
  QKQN01000116.1
  QKQN01000011.1
  QKQN01000012.1
  QKQN01000013.1
  QKQN01000014.1
  QKQN01000015.1
  QKQN01000016.1
  QKQN01000017.1
  QKQN01000018.1
  QKQN01000019.1
  QKQN01000001.1
  QKQN01000020.1
  QKQN01000021.1
  QKQN01000022.1
  QKQN01000023.1
  QKQN01000024.1
  QKQN01000025.1
  QKQN01000026.1
  QKQN01000027.1
  QKQN01000028.1
  QKQN01000029.1
  QKQN01000002.1
  QKQN01000030.1
  QKQN01000031.1
  QKQN01000032.1
  QKQN01000033.1
  QKQN01000035.1
  QKQN01000036.1
  QKQN01000037.1
  QKQN01000038.1
  QKQN01000039.1
  QKQN01000003.1
  QKQN01000040.1
  QKQN01000041.1
  QKQN01000042.1
  QKQN01000043.1
  QKQN01000044.1
  QKQN01000045.1
  QKQN01000046.1
  QKQN01000047.1
  QKQN01000048.1
  QKQN01000049.1
  QKQN01000004.1
  QKQN01000050.1
  QKQN01000051.1
  QKQN01000052.1
  QKQN01000054.1
  QKQN01000055.1
  QKQN01000056.1
  QKQN01000057.1
  QKQN01000058.1
  QKQN01000059.1
  QKQN01000005.1
  QKQN01000060.1
  QKQN01000061.1
  QKQN01000062.1
  QKQN01000063.1
  QKQN01000064.1
  QKQN01000065.1
  QKQN01000066.1
  QKQN01000067.1
  QKQN01000068.1
  QKQN01000069.1
  QKQN01000006.1
  QKQN01000070.1
  QKQN01000071.1
  QKQN01000072.1
  QKQN01000073.1
  QKQN01000074.1
  QKQN01000075.1
  QKQN01000076.1
  QKQN01000077.1
  QKQN01000078.1
  QKQN01000079.1
  QKQN01000007.1
  QKQN01000080.1
  QKQN01000081.1
  QKQN01000082.1
  QKQN01000083.1
  QKQN01000084.1
  QKQN01000085.1
  QKQN01000086.1
  QKQN01000087.1
  QKQN01000088.1
  QKQN01000089.1
  QKQN01000008.1
  QKQN01000090.1
  QKQN01000092.1
  QKQN01000093.1
  QKQN01000094.1
  QKQN01000095.1
  QKQN01000096.1
  QKQN01000097.1
  QKQN01000098.1
  QKQN01000099.1
  QKQN01000009.1

Compact view
QKQN01000034.1 - Region 1 - RiPP-like,lanthipeptide-class-ii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 16,085 nt. (total: 16,085 nt) Show pHMM detection rules used
Region on contig edge.
lanthipeptide-class-ii: cds(LANC_like and DUF4135)
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
KnownClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.

#### Lanthipeptide(s) for ctg44_9 - Putative Class II

ctg44_7 leader / core peptide
  MSNKDLNNIVGG - AFEEMDhaIQQMDhbEIQGLGVDhbQVQDha DhbPDhbVAIDhaRAGIAADhaRADha DhaVRCARWVDhaAAAGGAYDhbWKKHH
allorf_08469_08606 leader / core peptide
  VQLLHNLLHPFEKYSIYNA - YDhaPDha DhaLC DhaIVIRKMFFLAFYIKRC DhaF
allorf_13467_13619 leader / core peptide
  LATSQQEVALKGS - RERCNLDhaLQAIRVDhaQLDhbKLMC DhbRDhaKLLANANKCYNLK

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg44_7 - Class II
  Cleavage pHMM score: -0.90
  RODEO score: 0
  Monoisotopic mass: 6370.3 Da
  Molecular weight: 6374.2 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    6392.2 Da N = 1
    6410.2 Da N = 2
    6428.2 Da N = 3
    6446.2 Da N = 4
    6464.3 Da N = 5
    6482.3 Da N = 6
    6500.3 Da N = 7
    6518.3 Da N = 8
    6536.3 Da N = 9
    6554.4 Da N = 10
    6572.4 Da N = 11
allorf_08469_08606 - Class II
  Cleavage pHMM score: -7.30
  RODEO score: 0
  Monoisotopic mass: 3015.6 Da
  Molecular weight: 3017.7 Da
  Number of bridges: 2
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    3035.7 Da N = 1
    3053.7 Da N = 2
    3071.7 Da N = 3
allorf_13467_13619 - Class II
  Cleavage pHMM score: -7.10
  RODEO score: 0
  Monoisotopic mass: 4189.3 Da
  Molecular weight: 4192.0 Da
  Number of bridges: 3
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    4210.0 Da N = 1
    4228.0 Da N = 2

QKQN01000053.1 - Region 1 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 13,974 nt. (total: 13,974 nt) Show pHMM detection rules used
Region on contig edge.
NRPS: cds(Condensation and (AMP-binding or A-OX))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
KnownClusterBlast
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 0 - 13974:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (ala) + (pro) + (thr)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg65_2: ala
  Search NORINE for peptide: strict or relaxed
  AMP-binding (7..393): ala
  NRPSPredictor2: ala
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      gly, ala, val, leu, ile, abu, iva
    Small clusters prediction:
      gly, ala
    Single AA prediction:
      ala
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DLFNNALTYK
    Nearest Stachelhaus code:
      ala
    Stachelhaus code match:
      100% (strong)
ctg65_3: pro
  Search NORINE for peptide: strict or relaxed
  AMP-binding (267..640): pro
  NRPSPredictor2: pro
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      pro
    Single AA prediction:
      pro
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DVrHFaLlaK
    Nearest Stachelhaus code:
      ser
    Stachelhaus code match:
      60% (weak)
ctg65_4: thr
  Search NORINE for peptide: strict or relaxed
  AMP-binding (484..878): thr
  NRPSPredictor2: thr
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      ser, thr, dhpg, hpg
    Small clusters prediction:
      thr
    Single AA prediction:
      thr
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DFWNIGMVHK
    Nearest Stachelhaus code:
      thr
    Stachelhaus code match:
      100% (strong)

QKQN01000091.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 4,476 nt. (total: 4,476 nt) Show pHMM detection rules used
Region on contig edge.
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.