GCA_009863485.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

VSVD01000016.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	RiPP-like	21,302	31,717	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	58%

VSVD01000002.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	T3PKS	180,202	221,365

VSVD01000005.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	lanthipeptide-class-i	8,571	34,537	nisin Q	RiPP:Lanthipeptide	63%

No secondary metabolite regions were found in these records:: VSVD01000001.1; VSVD01000010.1; VSVD01000011.1; VSVD01000012.1; VSVD01000013.1; VSVD01000014.1; VSVD01000015.1; VSVD01000017.1; VSVD01000018.1; VSVD01000019.1; VSVD01000020.1; VSVD01000021.1; VSVD01000022.1; VSVD01000023.1; VSVD01000024.1; VSVD01000025.1; VSVD01000026.1; VSVD01000027.1; VSVD01000028.1; VSVD01000029.1; VSVD01000003.1; VSVD01000030.1; VSVD01000031.1; VSVD01000032.1; VSVD01000033.1; VSVD01000034.1; VSVD01000035.1; VSVD01000036.1; VSVD01000004.1; VSVD01000006.1; VSVD01000007.1; VSVD01000008.1; VSVD01000009.1

Compact view

VSVD01000016.1 - Region 1 - RiPP-like

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Location: 21,302 - 31,717 nt. (total: 10,416 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

VSVD01000002.1 - Region 1 - T3PKS

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Location: 180,202 - 221,365 nt. (total: 41,164 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VSVD01000005.1 - Region 1 - lanthipeptide-class-i

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Location: 8,571 - 34,537 nt. (total: 25,967 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg32_15 - Putative Class I

ctg32_14 leader / core peptide: MSVNDFKLDLVKVSKESTNSNYSVK - IDhbDhaYDhaLCDhbPGCKDhbGALMGCDhbMKDhbADhaCGCHVHIDhaK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg32_14 - Class I

Cleavage pHMM score: 12.40

RODEO score: 26

Monoisotopic mass: 3326.6 Da

Molecular weight: 3329.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3347.0 Da N = 1; 3365.0 Da N = 2; 3383.0 Da N = 3; 3401.1 Da N = 4