GCA_009863625.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

VSVN01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	301,247	342,410

VSVN01000015.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	RiPP-like	4,216	14,634	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	66%

VSVN01000006.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	lanthipeptide-class-i	58,505	84,471	nisin Q	RiPP:Lanthipeptide	63%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	T3PKS	301,247	342,410
Region 7.1	RiPP-like	4,216	14,634	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	66%
Region 31.1	lanthipeptide-class-i	58,505	84,471	nisin Q	RiPP:Lanthipeptide	63%

No secondary metabolite regions were found in these records:: VSVN01000010.1; VSVN01000011.1; VSVN01000012.1; VSVN01000013.1; VSVN01000014.1; VSVN01000016.1; VSVN01000017.1; VSVN01000018.1; VSVN01000019.1; VSVN01000002.1; VSVN01000020.1; VSVN01000021.1; VSVN01000022.1; VSVN01000023.1; VSVN01000024.1; VSVN01000025.1; VSVN01000026.1; VSVN01000027.1; VSVN01000028.1; VSVN01000029.1; VSVN01000003.1; VSVN01000030.1; VSVN01000031.1; VSVN01000032.1; VSVN01000033.1; VSVN01000034.1; VSVN01000004.1; VSVN01000005.1; VSVN01000007.1; VSVN01000008.1; VSVN01000009.1

Compact view

VSVN01000001.1 - Region 1 - T3PKS

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Location: 301,247 - 342,410 nt. (total: 41,164 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VSVN01000015.1 - Region 1 - RiPP-like

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Location: 4,216 - 14,634 nt. (total: 10,419 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

VSVN01000006.1 - Region 1 - lanthipeptide-class-i

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Location: 58,505 - 84,471 nt. (total: 25,967 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg31_69 - Putative Class I

ctg31_70 leader / core peptide: MSVNDFKLDLVKVSKESTNSNYSVK - IDhbDhaYDhaLCDhbPGCKDhbGALMGCDhbMKDhbADhaCGCHVHIDhaK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg31_70 - Class I

Cleavage pHMM score: 12.40

RODEO score: 26

Monoisotopic mass: 3326.6 Da

Molecular weight: 3329.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3347.0 Da N = 1; 3365.0 Da N = 2; 3383.0 Da N = 3; 3401.1 Da N = 4