GCA_009866235.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

VSUO01000006.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	RiPP-like	4,402	14,820	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	58%
Region 49.2	lanthipeptide-class-i	27,713	53,678	nisin Q	RiPP:Lanthipeptide	63%

VSUO01000008.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	T3PKS	61,445	95,755

No secondary metabolite regions were found in these records:: VSUO01000001.1; VSUO01000010.1; VSUO01000011.1; VSUO01000012.1; VSUO01000013.1; VSUO01000014.1; VSUO01000015.1; VSUO01000016.1; VSUO01000017.1; VSUO01000018.1; VSUO01000019.1; VSUO01000002.1; VSUO01000020.1; VSUO01000021.1; VSUO01000022.1; VSUO01000023.1; VSUO01000024.1; VSUO01000025.1; VSUO01000026.1; VSUO01000027.1; VSUO01000028.1; VSUO01000029.1; VSUO01000003.1; VSUO01000030.1; VSUO01000031.1; VSUO01000032.1; VSUO01000033.1; VSUO01000034.1; VSUO01000035.1; VSUO01000036.1; VSUO01000037.1; VSUO01000038.1; VSUO01000039.1; VSUO01000004.1; VSUO01000040.1; VSUO01000041.1; VSUO01000042.1; VSUO01000043.1; VSUO01000044.1; VSUO01000045.1; VSUO01000046.1; VSUO01000047.1; VSUO01000048.1; VSUO01000049.1; VSUO01000005.1; VSUO01000050.1; VSUO01000051.1; VSUO01000052.1; VSUO01000007.1; VSUO01000009.1

Compact view

VSUO01000006.1 - Region 1 - RiPP-like

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Location: 4,402 - 14,820 nt. (total: 10,419 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

VSUO01000006.1 - Region 2 - lanthipeptide-class-i

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Location: 27,713 - 53,678 nt. (total: 25,966 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg49_44 - Putative Class I

ctg49_43 leader / core peptide: MSVNDFKLDLVKVSKESTNSNYSVK - IDhbDhaYDhaLCDhbPGCKDhbGALMGCDhbMKDhbADhaCGCHVHIDhaK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg49_43 - Class I

Cleavage pHMM score: 12.40

RODEO score: 26

Monoisotopic mass: 3326.6 Da

Molecular weight: 3329.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3347.0 Da N = 1; 3365.0 Da N = 2; 3383.0 Da N = 3; 3401.1 Da N = 4

VSUO01000008.1 - Region 1 - T3PKS

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Location: 61,445 - 95,755 nt. (total: 34,311 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.