GCA_009870225.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

VSUI01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	301,162	342,325

VSUI01000005.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	lanthipeptide-class-i	77,301	103,265	nisin Q	RiPP:Lanthipeptide	63%
Region 43.2	RiPP-like	115,879	126,294	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	58%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	T3PKS	301,162	342,325
Region 43.1	lanthipeptide-class-i	77,301	103,265	nisin Q	RiPP:Lanthipeptide	63%
Region 43.2	RiPP-like	115,879	126,294	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	58%

Compact view

VSUI01000001.1 - Region 1 - T3PKS

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Location: 301,162 - 342,325 nt. (total: 41,164 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VSUI01000005.1 - Region 1 - lanthipeptide-class-i

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Location: 77,301 - 103,265 nt. (total: 25,965 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg43_85 - Putative Class I

ctg43_87 leader / core peptide: MSVNDFKLDLVKVSKESTNSNYSVK - IDhbDhaYDhaLCDhbPGCKDhbGALMGCDhbMKDhbADhaCGCHVHIDhaK

Lanthipeptide(s) for ctg43_86 - Putative Class I

ctg43_87 leader / core peptide: MSVNDFKLDLVKVSKESTNSNYSVK - IDhbDhaYDhaLCDhbPGCKDhbGALMGCDhbMKDhbADhaCGCHVHIDhaK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg43_87 - Class I

Cleavage pHMM score: 12.40

RODEO score: 26

Monoisotopic mass: 3326.6 Da

Molecular weight: 3329.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3347.0 Da N = 1; 3365.0 Da N = 2; 3383.0 Da N = 3; 3401.1 Da N = 4

ctg43_87 - Class I

Cleavage pHMM score: 12.40

RODEO score: 26

Monoisotopic mass: 3326.6 Da

Molecular weight: 3329.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3347.0 Da N = 1; 3365.0 Da N = 2; 3383.0 Da N = 3; 3401.1 Da N = 4

VSUI01000005.1 - Region 2 - RiPP-like

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Location: 115,879 - 126,294 nt. (total: 10,416 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters