GCA_009982935.1 - 10 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

SIWZ01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	other	408,999	450,417	bacilysin	Other	100%
Region 1.2	sactipeptide	457,510	479,121	subtilosin A	RiPP:Thiopeptide	100%
Region 1.3	lanthipeptide-class-ii,lanthipeptide-class-i	860,502	910,240	subtilin	RiPP:Lanthipeptide	100%
Region 1.4	NRPS	1,069,922	1,115,911	bacillibactin	NRP	100%
Region 1.5	NRPS	1,455,315	1,518,273	surfactin	NRP:Lipopeptide	82%
Region 1.6	terpene	2,203,048	2,223,557
Region 1.7	transAT-PKS,PKS-like,T3PKS,NRPS	2,853,050	2,958,323	bacillaene	Polyketide + NRP	100%
Region 1.8	NRPS,betalactone	3,033,233	3,110,992	fengycin	NRP	100%
Region 1.9	terpene	3,171,626	3,193,524
Region 1.10	T3PKS	3,241,267	3,282,364

Compact view

SIWZ01000001.1 - Region 1 - other

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Location: 408,999 - 450,417 nt. (total: 41,419 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

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KnownClusterBlast

Similar known gene clusters

SIWZ01000001.1 - Region 2 - sactipeptide

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Location: 457,510 - 479,121 nt. (total: 21,612 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

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KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Putative Sactipeptide(s)

ctg1_461 leader / core peptide: MKKAVIVENK - GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

Sactipeptides

Core peptide predictions

ctg1_461: Putative sactipeptide; RODEO score: 33.0; Core sequence, approximate: GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

SIWZ01000001.1 - Region 3 - lanthipeptide-class-i,lanthipeptide-class-ii

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Location: 860,502 - 910,240 nt. (total: 49,739 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)
lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_858 - Putative Class II

ctg1_857 leader / core peptide: MKKTKILKTPELKVTKDLNLIDPCGDVLEEIKEHEVSGA - FNDhbWNDhbDhbDhbDhbDhaVGDhbILVDhaEVFGNKGKVCDhbGDhbKECQGDhbC
ctg1_859 leader / core peptide: MKKDMVKNASGFIEEDELISLANGENATGG - GDhbPVDhbAIIDhbALDhbGDhbDhbFDhbVDhbLDhaAADhaCPDhbDhaACDhbNLCNK
allorf_0868966_0869142 leader / core peptide: LFLNTVETS - LDhaLRIDhaYNIRLDIFNGRDhbEHGKFQKRCDhaIFKDhaHDNRMNKVMIDhbDhbMEHCV
allorf_0869200_0869376 leader / core peptide: LEGILGVKSFLENGQQSFKTLRDGCHNLRVTVGS - ANNGCLEDhaRKHDhbDhaNNGIYENDLDhaDhb
allorf_0869345_0869476 leader / core peptide: MAYMKMICPHDKGEPLYDMEPEVFGG - NLVDhbADhaDhaVDhaCLELRGKY

Lanthipeptide(s) for ctg1_860 - Putative Class II

ctg1_857 leader / core peptide: MKKTKILKTPELKVTKDLNLIDPCGDVLEEIKEHEVSGA - FNDhbWNDhbDhbDhbDhbDhaVGDhbILVDhaEVFGNKGKVCDhbGDhbKECQGDhbC
ctg1_859 leader / core peptide: MKKDMVKNASGFIEEDELISLANGENATGG - GDhbPVDhbAIIDhbALDhbGDhbDhbFDhbVDhbLDhaAADhaCPDhbDhaACDhbNLCNK
allorf_0868966_0869142 leader / core peptide: LFLNTVETS - LDhaLRIDhaYNIRLDIFNGRDhbEHGKFQKRCDhaIFKDhaHDNRMNKVMIDhbDhbMEHCV
allorf_0869200_0869376 leader / core peptide: LEGILGVKSFLENGQQSFKTLRDGCHNLRVTVGS - ANNGCLEDhaRKHDhbDhaNNGIYENDLDhaDhb
allorf_0869345_0869476 leader / core peptide: MAYMKMICPHDKGEPLYDMEPEVFGG - NLVDhbADhaDhaVDhaCLELRGKY

Lanthipeptide(s) for ctg1_881 - Putative Class I

ctg1_884 leader / core peptide: MSKFDDFDLDVVKVSKQDSKITPQ - WKDhaEDhaLCDhbPGCVDhbGVLQDhbCFLQDhbIDhbCNCKIDhaK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg1_857 - Class II

Cleavage pHMM score: -3.20

RODEO score: 0

Monoisotopic mass: 3712.9 Da

Molecular weight: 3715.1 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3733.2 Da N = 1; 3751.2 Da N = 2; 3769.2 Da N = 3; 3787.2 Da N = 4; 3805.2 Da N = 5; 3823.3 Da N = 6; 3841.3 Da N = 7; 3859.3 Da N = 8

ctg1_859 - Class II

Cleavage pHMM score: -5.20

RODEO score: 0

Monoisotopic mass: 3294.8 Da

Molecular weight: 3296.8 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3314.8 Da N = 1; 3332.8 Da N = 2; 3350.8 Da N = 3; 3368.9 Da N = 4; 3386.9 Da N = 5; 3404.9 Da N = 6; 3422.9 Da N = 7; 3440.9 Da N = 8; 3459.0 Da N = 9; 3477.0 Da N = 10

allorf_0868966_0869142 - Class II

Cleavage pHMM score: -6.40

RODEO score: 0

Monoisotopic mass: 5740.0 Da

Molecular weight: 5743.7 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 5761.7 Da N = 1; 5779.7 Da N = 2; 5797.7 Da N = 3; 5815.7 Da N = 4; 5833.8 Da N = 5

allorf_0869200_0869376 - Class II

Cleavage pHMM score: -5.00

RODEO score: 0

Monoisotopic mass: 2546.2 Da

Molecular weight: 2547.7 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2565.7 Da N = 1; 2583.7 Da N = 2; 2601.7 Da N = 3; 2619.7 Da N = 4

allorf_0869345_0869476 - Class II

Cleavage pHMM score: -5.70

RODEO score: 0

Monoisotopic mass: 1767.0 Da

Molecular weight: 1768.0 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 1786.0 Da N = 1; 1804.1 Da N = 2; 1822.1 Da N = 3

ctg1_857 - Class II

Cleavage pHMM score: -3.20

RODEO score: 0

Monoisotopic mass: 3712.9 Da

Molecular weight: 3715.1 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3733.2 Da N = 1; 3751.2 Da N = 2; 3769.2 Da N = 3; 3787.2 Da N = 4; 3805.2 Da N = 5; 3823.3 Da N = 6; 3841.3 Da N = 7; 3859.3 Da N = 8

ctg1_859 - Class II

Cleavage pHMM score: -5.20

RODEO score: 0

Monoisotopic mass: 3294.8 Da

Molecular weight: 3296.8 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3314.8 Da N = 1; 3332.8 Da N = 2; 3350.8 Da N = 3; 3368.9 Da N = 4; 3386.9 Da N = 5; 3404.9 Da N = 6; 3422.9 Da N = 7; 3440.9 Da N = 8; 3459.0 Da N = 9; 3477.0 Da N = 10

allorf_0868966_0869142 - Class II

Cleavage pHMM score: -6.40

RODEO score: 0

Monoisotopic mass: 5740.0 Da

Molecular weight: 5743.7 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 5761.7 Da N = 1; 5779.7 Da N = 2; 5797.7 Da N = 3; 5815.7 Da N = 4; 5833.8 Da N = 5

allorf_0869200_0869376 - Class II

Cleavage pHMM score: -5.00

RODEO score: 0

Monoisotopic mass: 2546.2 Da

Molecular weight: 2547.7 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2565.7 Da N = 1; 2583.7 Da N = 2; 2601.7 Da N = 3; 2619.7 Da N = 4

allorf_0869345_0869476 - Class II

Cleavage pHMM score: -5.70

RODEO score: 0

Monoisotopic mass: 1767.0 Da

Molecular weight: 1768.0 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 1786.0 Da N = 1; 1804.1 Da N = 2; 1822.1 Da N = 3

ctg1_884 - Class I

Cleavage pHMM score: 27.80

RODEO score: 30

Monoisotopic mass: 3346.7 Da

Molecular weight: 3349.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3367.0 Da N = 1; 3385.0 Da N = 2; 3403.0 Da N = 3

SIWZ01000001.1 - Region 4 - NRPS

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Location: 1,069,922 - 1,115,911 nt. (total: 45,990 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 4, location 1069921 - 1115911:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1075

Search NORINE for peptide: strict or relaxed

AMP-binding (31..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

ctg1_1077

Search NORINE for peptide: strict or relaxed

AMP-binding (463..861): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1519..1935): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

SIWZ01000001.1 - Region 5 - NRPS

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Location: 1,455,315 - 1,518,273 nt. (total: 62,959 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 5, location 1455314 - 1518273:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu - D-leu) + (val - asp - D-leu) + (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1445

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1908): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFMMGMVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

AMP-binding (2550..2938): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

ctg1_1446

Search NORINE for peptide: strict or relaxed

AMP-binding (470..864): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1501..1904): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (2546..2934): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

ctg1_1447

Search NORINE for peptide: strict or relaxed

AMP-binding (469..867): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

SIWZ01000001.1 - Region 6 - terpene

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Location: 2,203,048 - 2,223,557 nt. (total: 20,510 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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KnownClusterBlast

Similar known gene clusters

No matches found.

SIWZ01000001.1 - Region 7 - NRPS,PKS-like,T3PKS,transAT-PKS

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Location: 2,853,050 - 2,958,323 nt. (total: 105,274 nt) Show pHMM detection rules used

transAT-PKS: (cds(PKS_AT and not (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) and (cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) or cds(tra_KS and PP-binding)))
PKS-like: (t2pks2 or ksIII)
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 7, location 2853049 - 2958323:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - ccmal - ohmal - mal) + (mal - ccmal - mal - ohmal - mal) + (mal - ccmal - ohmal - mal) + (X - ccmal - ccmal - ccmal) + (ccmal - mal - mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 8, location 2853049 - 2943653:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - ccmal - ohmal - mal) + (mal - ccmal - mal - ohmal - mal) + (mal - ccmal - ohmal - mal) + (X - ccmal - ccmal - ccmal) + (ccmal - mal - mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_2856

PKS_AT (4..284): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 99.4
Methoxymalonyl-CoA: 54.7
inactive: 37.7
Methylmalonyl-CoA: 37.5
Propionyl-CoA: 24.9
Ethylmalonyl-CoA: 10.9
2-Methylbutyryl-CoA: 9.4
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg1_2858

PKS_AT (7..293): pk

ATSignature: (unknown)

No matches above 50%

minowa: inactive

Prediction, score:

inactive: 25.6
Malonyl-CoA: 24.5
Benzoyl-CoA: 8.7
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg1_2859

PKS_AT (4..285): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 66.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 96.2
inactive: 40.7
Methoxymalonyl-CoA: 29.2
Methylmalonyl-CoA: 22.2
Propionyl-CoA: 16.2
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg1_2865

Search NORINE for peptide: strict or relaxed

CAL_domain (63..471): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 16.1
NH2: 12.6
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (1159..1554): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg1_2868

Search NORINE for peptide: strict or relaxed

AMP-binding (497..905): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVsnmAiIYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 60% (weak)

SIWZ01000001.1 - Region 8 - NRPS,betalactone

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Location: 3,033,233 - 3,110,992 nt. (total: 77,760 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 9, location 3033232 - 3110992:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-orn) + (tyr - D-thr) + (glu - D-val) + (pro - glu - D-tyr) + (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_2984

Search NORINE for peptide: strict or relaxed

AMP-binding (13..445): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gclhIAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg1_2988

Search NORINE for peptide: strict or relaxed

AMP-binding (474..867): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

ctg1_2989

Search NORINE for peptide: strict or relaxed

AMP-binding (468..865): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (1499..1900): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGSVEK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2538..2932): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

ctg1_2990

Search NORINE for peptide: strict or relaxed

AMP-binding (469..870): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1903): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DVFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

ctg1_2991

Search NORINE for peptide: strict or relaxed

AMP-binding (474..865): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

AMP-binding (1505..1903): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg1_2992

Search NORINE for peptide: strict or relaxed

AMP-binding (463..864): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1503..1908): orn

NRPSPredictor2: orn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: orn, horn
Single AA prediction:: orn

Stachelhaus prediction details:

Stachelhaus sequence:: DVGEIGSIDK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 100% (strong)

SIWZ01000001.1 - Region 9 - terpene

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Location: 3,171,626 - 3,193,524 nt. (total: 21,899 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

SIWZ01000001.1 - Region 10 - T3PKS

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Location: 3,241,267 - 3,282,364 nt. (total: 41,098 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.